Warning: Permanently added '13.223.51.254' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10657396-fedora-43-x86_64 --chroot fedora-43-x86_64 Version: 1.8 PID: 9390 Logging PID: 9392 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 10657396, 'buildroot_pkgs': [], 'chroot': 'fedora-43-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'aac23ad80449af29d81058f6ce64d953554a5f05', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/lbalhar/python-setuptools_rawhide/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.2.0-2', 'project_dirname': 'python-setuptools_rawhide', 'project_name': 'python-setuptools_rawhide', 'project_owner': 'lbalhar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/lbalhar/python-setuptools_rawhide/fedora-43-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'lbalhar/python-setuptools_rawhide--https://src.fedoraproject.org/user/yselkowitz', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'https://src.fedoraproject.org/user/yselkowitz', 'tags': [], 'task_id': '10657396-fedora-43-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/lbalhar/python-setuptools_rawhide/openbabel /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/lbalhar/python-setuptools_rawhide/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel'... Running: git checkout aac23ad80449af29d81058f6ce64d953554a5f05 -- cmd: ['git', 'checkout', 'aac23ad80449af29d81058f6ce64d953554a5f05', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel rc: 0 stdout: stderr: Note: switching to 'aac23ad80449af29d81058f6ce64d953554a5f05'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at aac23ad automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-2-0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o openbabel-openbabel-3-2-0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lbalhar/python-setuptools_rawhide/openbabel/openbabel-openbabel-3-2-0.tar.gz/md5/7ff7d2b8de07fa0507a7826f62d7045a/openbabel-openbabel-3-2-0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 36.06M 100 36.06M 0 0 227.2M 0 0 INFO: Reading stdout from command: md5sum openbabel-openbabel-3-2-0.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1782663477.143687 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.5, NVR = mock-6.7-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1782663477.143687 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel/openbabel.spec) Config(fedora-43-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-bootstrap-1782663477.143687/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:43 INFO: Pulling image: registry.fedoraproject.org/fedora:43 INFO: Tagging container image as mock-bootstrap-e29da5cc-bb77-472c-a1e7-bd781d98b6fc INFO: Checking that aae9fa19e66ecf6c673084da242efafd6d11aca555369ec750661b847ce7491e image matches host's architecture INFO: Copy content of container aae9fa19e66ecf6c673084da242efafd6d11aca555369ec750661b847ce7491e to /var/lib/mock/fedora-43-x86_64-bootstrap-1782663477.143687/root INFO: mounting aae9fa19e66ecf6c673084da242efafd6d11aca555369ec750661b847ce7491e with podman image mount INFO: image aae9fa19e66ecf6c673084da242efafd6d11aca555369ec750661b847ce7491e as /var/lib/containers/storage/overlay/4b35ba8114d297581d99097b9f3b8c6c3d76f4e6b239672ef7ce9baa2f05df20/merged INFO: umounting image aae9fa19e66ecf6c673084da242efafd6d11aca555369ec750661b847ce7491e (/var/lib/containers/storage/overlay/4b35ba8114d297581d99097b9f3b8c6c3d76f4e6b239672ef7ce9baa2f05df20/merged) with podman image umount INFO: Removing image mock-bootstrap-e29da5cc-bb77-472c-a1e7-bd781d98b6fc INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-1782663477.143687/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.x86_64 rpm-sequoia-1.10.2-2.fc43.x86_64 dnf5-5.2.18.0-4.fc43.x86_64 dnf5-plugins-5.2.18.0-4.fc43.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 4.8 MiB/s | 4.1 MiB | 00m01s updates 100% | 23.5 MiB/s | 26.0 MiB | 00m01s fedora 100% | 24.7 MiB/s | 35.4 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.7-9.fc43 updates 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 43-27 updates 20.6 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42-13.fc43 updates 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.13-4.fc43 fedora 388.8 KiB info x86_64 7.2-7.fc43 updates 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-14.fc43 updates 182.9 KiB rpm-build x86_64 6.0.1-1.fc43 updates 287.5 KiB sed x86_64 4.9-5.fc43 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-67.fc43 fedora 386.3 KiB util-linux x86_64 2.41.5-1.fc43 updates 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-4.fc43 updates 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-3.fc43 updates 2.3 MiB alternatives x86_64 1.33-3.fc43 updates 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.4-1.fc43 updates 378.8 KiB binutils x86_64 2.45.1-4.fc43 updates 27.3 MiB build-reproducibility-srpm-macros noarch 0.6.0-3.fc43 updates 735.0 B bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-1.2.fc43 updates 2.7 MiB cmake-srpm-macros noarch 3.31.11-1.fc43 updates 524.0 B coreutils-common x86_64 9.7-9.fc43 updates 11.3 MiB crypto-policies noarch 20251125-1.git63291f8.fc43 updates 147.1 KiB curl x86_64 8.15.0-7.fc43 updates 461.4 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc43 fedora 2.3 MiB debugedit x86_64 5.2-3.fc43 fedora 214.0 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc43 fedora 148.1 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils x86_64 0.195-1.fc43 updates 2.9 MiB elfutils-debuginfod-client x86_64 0.195-1.fc43 updates 84.1 KiB elfutils-default-yama-scope noarch 0.195-1.fc43 updates 1.8 KiB elfutils-libelf x86_64 0.195-1.fc43 updates 1.2 MiB elfutils-libs x86_64 0.195-1.fc43 updates 691.5 KiB fedora-gpg-keys noarch 43-1 fedora 131.2 KiB fedora-release noarch 43-27 updates 0.0 B fedora-release-identity-basic noarch 43-27 updates 631.0 B fedora-repos noarch 43-1 fedora 4.9 KiB file x86_64 5.47-3.fc43 copr_base 101.2 KiB file-libs x86_64 5.47-3.fc43 copr_base 12.2 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 2-1.fc43 fedora 2.1 KiB gdb-minimal x86_64 17.1-4.fc43 updates 13.6 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42-13.fc43 updates 6.7 MiB glibc-common x86_64 2.42-13.fc43 updates 1.0 MiB glibc-gconv-extra x86_64 2.42-13.fc43 updates 7.2 MiB gmp x86_64 1:6.3.0-4.fc43 fedora 811.2 KiB gnat-srpm-macros noarch 7-1.fc43 updates 1.0 KiB gnome-srpm-macros noarch 1.0-1.fc43 updates 3.5 KiB gnulib-l10n noarch 20241231-1.fc43 fedora 655.0 KiB gnupg2 x86_64 2.4.9-5.fc43 updates 6.6 MiB gnupg2-dirmngr x86_64 2.4.9-5.fc43 updates 618.4 KiB gnupg2-gpg-agent x86_64 2.4.9-5.fc43 updates 671.4 KiB gnupg2-gpgconf x86_64 2.4.9-5.fc43 updates 250.0 KiB gnupg2-keyboxd x86_64 2.4.9-5.fc43 updates 201.4 KiB gnupg2-verify x86_64 2.4.9-5.fc43 updates 348.5 KiB gnutls x86_64 3.8.13-1.fc43 updates 3.8 MiB go-srpm-macros noarch 3.8.0-1.fc43 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-6.fc43 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.22.2-4.fc43 updates 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.4-1.fc43 updates 955.3 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.5-1.fc43 updates 262.3 KiB libbrotli x86_64 1.2.0-4.fc43 copr_base 865.0 KiB libcap x86_64 2.76-4.fc43 updates 209.1 KiB libcap-ng x86_64 0.9.3-1.fc43 updates 69.0 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.15.0-7.fc43 updates 907.1 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.5-1.fc43 updates 380.3 KiB libffi x86_64 3.5.2-1.fc43 updates 83.8 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-7.fc43 updates 266.6 KiB libgcrypt x86_64 1.11.1-4.fc43 updates 1.6 MiB libgomp x86_64 15.2.1-7.fc43 updates 541.5 KiB libgpg-error x86_64 1.55-2.fc43 fedora 915.3 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.5-1.fc43 updates 37.6 KiB libmount x86_64 2.41.5-1.fc43 updates 376.6 KiB libnghttp2 x86_64 1.66.0-2.fc43 fedora 162.2 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-7.fc43 copr_base 193.1 KiB libsemanage x86_64 3.9-5.fc43 copr_base 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.5-1.fc43 updates 180.3 KiB libssh x86_64 0.11.4-1.fc43 updates 571.8 KiB libssh-config noarch 0.11.4-1.fc43 updates 277.0 B libstdc++ x86_64 15.2.1-7.fc43 updates 2.8 MiB libtasn1 x86_64 4.21.0-1.fc43 updates 176.7 KiB libtool-ltdl x86_64 2.5.4-8.fc43 updates 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.30-1.fc43 updates 176.0 KiB libuuid x86_64 2.41.5-1.fc43 updates 37.2 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.5.2-1.fc43 updates 285.3 KiB libxml2 x86_64 2.12.10-5.fc43 fedora 1.7 MiB libzstd x86_64 1.5.7-2.fc43 fedora 799.9 KiB lua-libs x86_64 5.4.8-4.fc43 updates 281.9 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.13-1.fc43 updates 658.1 KiB openssl-libs x86_64 1:3.5.7-1.fc43 updates 8.9 MiB p11-kit x86_64 0.26.2-1.fc43 updates 2.5 MiB p11-kit-trust x86_64 0.26.2-1.fc43 updates 466.5 KiB package-notes-srpm-macros noarch 0.20-1.fc43 updates 1.6 KiB pam-libs x86_64 1.7.1-4.fc43 updates 126.8 KiB pcre2 x86_64 10.47-1.fc43 updates 702.6 KiB pcre2-syntax noarch 10.47-1.fc43 updates 281.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20260116-1.fc43 updates 70.4 KiB pyproject-srpm-macros noarch 1.22.2-1.fc43 copr_base 3.2 KiB python-srpm-macros noarch 3.14-5.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.18-1.fc43 updates 500.0 B qt6-srpm-macros noarch 6.10.3-1.fc43 updates 472.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 6.0.1-1.fc43 updates 3.1 MiB rpm-build-libs x86_64 6.0.1-1.fc43 updates 264.4 KiB rpm-libs x86_64 6.0.1-1.fc43 updates 933.7 KiB rpm-sequoia x86_64 1.10.2-2.fc43 updates 2.4 MiB rpm-sign-libs x86_64 6.0.1-1.fc43 updates 39.7 KiB rust-srpm-macros noarch 28.4-1.fc43 updates 5.5 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs x86_64 258.8-1.fc43 updates 2.3 MiB systemd-standalone-sysusers x86_64 258.8-1.fc43 updates 293.4 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.5-1.fc43 updates 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-4.fc43 updates 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.3.3-2.fc43 updates 161.7 KiB zstd x86_64 1.5.7-2.fc43 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 172 packages Total size of inbound packages is 59 MiB. Need to download 59 MiB. After this operation, 201 MiB extra will be used (install 201 MiB, remove 0 B). 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pyproject-srpm-macros-0:1.22. 100% | 7.5 MiB/s | 15.4 KiB | 00m00s [131/172] curl-0:8.15.0-7.fc43.x86_64 100% | 27.7 MiB/s | 226.9 KiB | 00m00s [132/172] build-reproducibility-srpm-ma 100% | 1.5 MiB/s | 11.9 KiB | 00m00s [133/172] gnat-srpm-macros-0:7-1.fc43.n 100% | 1.1 MiB/s | 8.7 KiB | 00m00s [134/172] add-determinism-0:0.6.0-3.fc4 100% | 87.3 MiB/s | 893.7 KiB | 00m00s [135/172] package-notes-srpm-macros-0:0 100% | 1.2 MiB/s | 9.9 KiB | 00m00s [136/172] qt5-srpm-macros-0:5.15.18-1.f 100% | 1.1 MiB/s | 8.6 KiB | 00m00s [137/172] qt6-srpm-macros-0:6.10.3-1.fc 100% | 1.1 MiB/s | 9.1 KiB | 00m00s [138/172] rust-srpm-macros-0:28.4-1.fc4 100% | 1.3 MiB/s | 10.8 KiB | 00m00s [139/172] ca-certificates-0:2025.2.80_v 100% | 95.2 MiB/s | 974.5 KiB | 00m00s [140/172] crypto-policies-0:20251125-1. 100% | 11.9 MiB/s | 97.8 KiB | 00m00s [141/172] libidn2-0:2.3.8-2.fc43.x86_64 100% | 19.0 MiB/s | 174.9 KiB | 00m00s [142/172] libgcrypt-0:1.11.1-4.fc43.x86 100% | 36.4 MiB/s | 596.0 KiB | 00m00s [143/172] gnutls-0:3.8.13-1.fc43.x86_64 100% | 106.8 MiB/s | 1.4 MiB | 00m00s [144/172] libunistring-0:1.1-10.fc43.x8 100% | 48.2 MiB/s | 542.9 KiB | 00m00s [145/172] openldap-0:2.6.13-1.fc43.x86_ 100% | 31.7 MiB/s | 259.7 KiB | 00m00s [146/172] nettle-0:3.10.1-2.fc43.x86_64 100% | 37.7 MiB/s | 424.2 KiB | 00m00s [147/172] gdbm-libs-1:1.23-10.fc43.x86_ 100% | 6.2 MiB/s | 56.8 KiB | 00m00s [148/172] cyrus-sasl-lib-0:2.1.28-33.fc 100% | 64.1 MiB/s | 787.9 KiB | 00m00s [149/172] elfutils-default-yama-scope-0 100% | 1.4 MiB/s | 11.2 KiB | 00m00s [150/172] libffi-0:3.5.2-1.fc43.x86_64 100% | 5.0 MiB/s | 41.1 KiB | 00m00s [151/172] libevent-0:2.1.12-16.fc43.x86 100% | 10.5 MiB/s | 257.8 KiB | 00m00s [152/172] p11-kit-trust-0:0.26.2-1.fc43 100% | 17.1 MiB/s | 140.4 KiB | 00m00s [153/172] p11-kit-0:0.26.2-1.fc43.x86_6 100% | 58.3 MiB/s | 537.2 KiB | 00m00s [154/172] alternatives-0:1.33-3.fc43.x8 100% | 5.0 MiB/s | 40.6 KiB | 00m00s [155/172] libtasn1-0:4.21.0-1.fc43.x86_ 100% | 9.1 MiB/s | 74.5 KiB | 00m00s [156/172] libtool-ltdl-0:2.5.4-8.fc43.x 100% | 4.4 MiB/s | 36.2 KiB | 00m00s [157/172] fedora-release-0:43-27.noarch 100% | 1.4 MiB/s | 11.5 KiB | 00m00s [158/172] xxhash-libs-0:0.8.3-3.fc43.x8 100% | 4.7 MiB/s | 38.5 KiB | 00m00s [159/172] systemd-standalone-sysusers-0 100% | 18.1 MiB/s | 148.5 KiB | 00m00s [160/172] fedora-release-identity-basic 100% | 1.5 MiB/s | 12.3 KiB | 00m00s [161/172] gdb-minimal-0:17.1-4.fc43.x86 100% | 165.7 MiB/s | 4.5 MiB | 00m00s [162/172] libssh-0:0.11.4-1.fc43.x86_64 100% | 28.5 MiB/s | 233.3 KiB | 00m00s [163/172] libcurl-0:8.15.0-7.fc43.x86_6 100% | 30.3 MiB/s | 403.1 KiB | 00m00s [164/172] libnghttp2-0:1.66.0-2.fc43.x8 100% | 7.9 MiB/s | 72.5 KiB | 00m00s [165/172] libssh-config-0:0.11.4-1.fc43 100% | 1.1 MiB/s | 9.2 KiB | 00m00s [166/172] libpsl-0:0.21.5-6.fc43.x86_64 100% | 7.0 MiB/s | 65.0 KiB | 00m00s [167/172] publicsuffix-list-dafsa-0:202 100% | 7.4 MiB/s | 60.3 KiB | 00m00s [168/172] keyutils-libs-0:1.6.3-6.fc43. 100% | 3.8 MiB/s | 31.4 KiB | 00m00s [169/172] krb5-libs-0:1.22.2-4.fc43.x86 100% | 75.2 MiB/s | 770.4 KiB | 00m00s [170/172] libbrotli-0:1.2.0-4.fc43.x86_ 100% | 85.2 MiB/s | 349.1 KiB | 00m00s [171/172] libverto-0:0.3.2-11.fc43.x86_ 100% | 2.5 MiB/s | 20.7 KiB | 00m00s [172/172] libcom_err-0:1.47.3-2.fc43.x8 100% | 3.3 MiB/s | 26.8 KiB | 00m00s -------------------------------------------------------------------------------- [172/172] Total 100% | 89.3 MiB/s | 59.3 MiB | 00m01s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/174] Verify package files 100% | 771.0 B/s | 172.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64 >>> [RPM] /var/lib/mock/fedora-43-x86_64-1782663477.143687/root/var/cache/dnf/co [ 2/174] Prepare transaction 100% | 4.0 KiB/s | 172.0 B | 00m00s [ 3/174] Installing libgcc-0:15.2.1-7. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/174] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 5/174] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/174] Installing fedora-release-ide 100% | 0.0 B/s | 888.0 B | 00m00s [ 7/174] Installing fedora-gpg-keys-0: 100% | 58.3 MiB/s | 179.0 KiB | 00m00s [ 8/174] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/174] Installing fedora-release-com 100% | 24.3 MiB/s | 24.8 KiB | 00m00s [ 10/174] Installing fedora-release-0:4 100% | 12.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/174] Installing setup-0:2.15.0-26. 100% | 47.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/174] Installing filesystem-0:3.18- 100% | 2.9 MiB/s | 212.8 KiB | 00m00s [ 13/174] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [ 14/174] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 15/174] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 16/174] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 17/174] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 18/174] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 19/174] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 20/174] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 21/174] Installing coreutils-common-0 100% | 376.4 MiB/s | 11.3 MiB | 00m00s [ 22/174] Installing ncurses-base-0:6.5 100% | 86.3 MiB/s | 353.5 KiB | 00m00s [ 23/174] Installing bash-0:5.3.0-2.fc4 100% | 255.5 MiB/s | 8.4 MiB | 00m00s [ 24/174] Installing glibc-common-0:2.4 100% | 59.9 MiB/s | 1.0 MiB | 00m00s [ 25/174] Installing glibc-gconv-extra- 100% | 291.2 MiB/s | 7.3 MiB | 00m00s [ 26/174] Installing glibc-0:2.42-13.fc 100% | 176.4 MiB/s | 6.7 MiB | 00m00s [ 27/174] Installing ncurses-libs-0:6.5 100% | 232.6 MiB/s | 952.8 KiB | 00m00s [ 28/174] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 29/174] Installing zlib-ng-compat-0:2 100% | 158.7 MiB/s | 162.6 KiB | 00m00s [ 30/174] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.7 KiB | 00m00s [ 31/174] Installing libgpg-error-0:1.5 100% | 56.2 MiB/s | 921.1 KiB | 00m00s [ 32/174] Installing libstdc++-0:15.2.1 100% | 355.5 MiB/s | 2.8 MiB | 00m00s [ 33/174] Installing xz-libs-1:5.8.1-4. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 34/174] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 35/174] Installing libgcrypt-0:1.11.1 100% | 393.7 MiB/s | 1.6 MiB | 00m00s [ 36/174] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB | 00m00s [ 37/174] Installing gmp-1:6.3.0-4.fc43 100% | 397.2 MiB/s | 813.5 KiB | 00m00s [ 38/174] Installing libuuid-0:2.41.5-1 100% | 37.5 MiB/s | 38.4 KiB | 00m00s [ 39/174] Installing popt-0:1.19-9.fc43 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 40/174] Installing npth-0:1.8-3.fc43. 100% | 0.0 B/s | 50.7 KiB | 00m00s [ 41/174] Installing libblkid-0:2.41.5- 100% | 257.3 MiB/s | 263.4 KiB | 00m00s [ 42/174] Installing libzstd-0:1.5.7-2. 100% | 391.2 MiB/s | 801.1 KiB | 00m00s [ 43/174] Installing elfutils-libelf-0: 100% | 386.0 MiB/s | 1.2 MiB | 00m00s [ 44/174] Installing sqlite-libs-0:3.50 100% | 379.1 MiB/s | 1.5 MiB | 00m00s [ 45/174] Installing libxcrypt-0:4.5.2- 100% | 281.3 MiB/s | 288.0 KiB | 00m00s [ 46/174] Installing gnupg2-gpgconf-0:2 100% | 18.9 MiB/s | 252.1 KiB | 00m00s [ 47/174] Installing libattr-0:2.5.2-6. 100% | 24.8 MiB/s | 25.4 KiB | 00m00s [ 48/174] Installing libacl-0:2.3.2-4.f 100% | 0.0 B/s | 36.8 KiB | 00m00s [ 49/174] Installing libunistring-0:1.1 100% | 345.3 MiB/s | 1.7 MiB | 00m00s [ 50/174] Installing libidn2-0:2.3.8-2. 100% | 181.9 MiB/s | 558.7 KiB | 00m00s [ 51/174] Installing libtasn1-0:4.21.0- 100% | 15.9 MiB/s | 178.6 KiB | 00m00s [ 52/174] Installing crypto-policies-0: 100% | 33.6 MiB/s | 172.2 KiB | 00m00s [ 53/174] Installing dwz-0:0.16-2.fc43. 100% | 18.8 MiB/s | 288.5 KiB | 00m00s [ 54/174] Installing gnupg2-verify-0:2. 100% | 22.8 MiB/s | 349.9 KiB | 00m00s [ 55/174] Installing mpfr-0:4.2.2-2.fc4 100% | 271.6 MiB/s | 834.4 KiB | 00m00s [ 56/174] Installing gawk-0:5.3.2-2.fc4 100% | 90.8 MiB/s | 1.8 MiB | 00m00s [ 57/174] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.1 KiB | 00m00s [ 58/174] Installing unzip-0:6.0-67.fc4 100% | 27.2 MiB/s | 389.8 KiB | 00m00s [ 59/174] Installing file-libs-0:5.47-3 100% | 641.4 MiB/s | 12.2 MiB | 00m00s [ 60/174] Installing file-0:5.47-3.fc43 100% | 7.7 MiB/s | 102.6 KiB | 00m00s [ 61/174] Installing libeconf-0:0.7.9-2 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 62/174] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [ 63/174] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 64/174] Installing pcre2-0:10.47-1.fc 100% | 343.8 MiB/s | 704.1 KiB | 00m00s [ 65/174] Installing grep-0:3.12-2.fc43 100% | 59.0 MiB/s | 1.0 MiB | 00m00s [ 66/174] Installing xz-1:5.8.1-4.fc43. 100% | 74.0 MiB/s | 1.3 MiB | 00m00s [ 67/174] Installing libsepol-0:3.9-2.f 100% | 267.9 MiB/s | 822.9 KiB | 00m00s [ 68/174] Installing libselinux-0:3.9-7 100% | 189.8 MiB/s | 194.4 KiB | 00m00s [ 69/174] Installing findutils-1:4.10.0 100% | 109.3 MiB/s | 1.9 MiB | 00m00s [ 70/174] Installing sed-0:4.9-5.fc43.x 100% | 56.3 MiB/s | 865.5 KiB | 00m00s [ 71/174] Installing libmount-0:2.41.5- 100% | 184.4 MiB/s | 377.7 KiB | 00m00s [ 72/174] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.5 KiB | 00m00s [ 73/174] Installing libcap-ng-0:0.9.3- 100% | 69.2 MiB/s | 70.9 KiB | 00m00s [ 74/174] Installing audit-libs-0:4.1.4 100% | 186.2 MiB/s | 381.4 KiB | 00m00s [ 75/174] Installing pam-libs-0:1.7.1-4 100% | 126.1 MiB/s | 129.1 KiB | 00m00s [ 76/174] Installing libcap-0:2.76-4.fc 100% | 14.9 MiB/s | 214.3 KiB | 00m00s [ 77/174] Installing systemd-libs-0:258 100% | 333.8 MiB/s | 2.3 MiB | 00m00s [ 78/174] Installing lua-libs-0:5.4.8-4 100% | 276.7 MiB/s | 283.3 KiB | 00m00s [ 79/174] Installing libffi-0:3.5.2-1.f 100% | 83.2 MiB/s | 85.2 KiB | 00m00s [ 80/174] Installing p11-kit-0:0.26.2-1 100% | 119.5 MiB/s | 2.5 MiB | 00m00s [ 81/174] Installing alternatives-0:1.3 100% | 4.4 MiB/s | 63.8 KiB | 00m00s [ 82/174] Installing p11-kit-trust-0:0. 100% | 19.1 MiB/s | 468.2 KiB | 00m00s [ 83/174] Installing openssl-libs-1:3.5 100% | 343.0 MiB/s | 8.9 MiB | 00m00s [ 84/174] Installing coreutils-0:9.7-9. 100% | 151.0 MiB/s | 5.4 MiB | 00m00s [ 85/174] Installing ca-certificates-0: 100% | 1.8 MiB/s | 2.5 MiB | 00m01s [ 86/174] Installing gzip-0:1.13-4.fc43 100% | 27.5 MiB/s | 394.4 KiB | 00m00s [ 87/174] Installing libfsverity-0:1.6- 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 88/174] Installing rpm-sequoia-0:1.10 100% | 339.9 MiB/s | 2.4 MiB | 00m00s [ 89/174] Installing libevent-0:2.1.12- 100% | 216.5 MiB/s | 886.8 KiB | 00m00s [ 90/174] Installing util-linux-core-0: 100% | 77.7 MiB/s | 1.5 MiB | 00m00s [ 91/174] Installing libusb1-0:1.0.30-1 100% | 15.8 MiB/s | 177.7 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 92/174] Installing tpm2-tss-0:4.1.3-8 100% | 224.6 MiB/s | 1.6 MiB | 00m00s [ 93/174] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [ 94/174] Installing gnupg2-gpg-agent-0 100% | 26.4 MiB/s | 675.4 KiB | 00m00s [ 95/174] Installing systemd-standalone 100% | 20.5 MiB/s | 294.0 KiB | 00m00s [ 96/174] Installing rpm-libs-0:6.0.1-1 100% | 304.5 MiB/s | 935.3 KiB | 00m00s [ 97/174] Installing liblastlog2-0:2.41 100% | 5.5 MiB/s | 39.5 KiB | 00m00s [ 98/174] Installing libsemanage-0:3.9- 100% | 151.5 MiB/s | 310.3 KiB | 00m00s [ 99/174] Installing tar-2:1.35-6.fc43. 100% | 134.5 MiB/s | 3.0 MiB | 00m00s [100/174] Installing zstd-0:1.5.7-2.fc4 100% | 95.0 MiB/s | 1.7 MiB | 00m00s [101/174] Installing zip-0:3.0-44.fc43. 100% | 45.5 MiB/s | 698.4 KiB | 00m00s [102/174] Installing gnupg2-keyboxd-0:2 100% | 24.7 MiB/s | 202.7 KiB | 00m00s [103/174] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [104/174] Installing libfdisk-0:2.41.5- 100% | 186.2 MiB/s | 381.4 KiB | 00m00s [105/174] Installing nettle-0:3.10.1-2. 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [106/174] Installing gnutls-0:3.8.13-1. 100% | 342.5 MiB/s | 3.8 MiB | 00m00s [107/174] Installing libxml2-0:2.12.10- 100% | 89.7 MiB/s | 1.7 MiB | 00m00s [108/174] Installing libarchive-0:3.8.4 100% | 311.6 MiB/s | 957.2 KiB | 00m00s [109/174] Installing bzip2-0:1.0.8-21.f 100% | 7.5 MiB/s | 99.8 KiB | 00m00s [110/174] Installing add-determinism-0: 100% | 121.2 MiB/s | 2.3 MiB | 00m00s [111/174] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [112/174] Installing cpio-0:2.15-6.fc43 100% | 68.7 MiB/s | 1.1 MiB | 00m00s [113/174] Installing diffutils-0:3.12-3 100% | 86.7 MiB/s | 1.6 MiB | 00m00s [114/174] Installing ed-0:1.22.2-1.fc43 100% | 11.3 MiB/s | 150.4 KiB | 00m00s [115/174] Installing patch-0:2.8-2.fc43 100% | 16.9 MiB/s | 224.3 KiB | 00m00s [116/174] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [117/174] Installing libgomp-0:15.2.1-7 100% | 265.1 MiB/s | 542.9 KiB | 00m00s [118/174] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [119/174] Installing pkgconf-0:2.3.0-3. 100% | 6.3 MiB/s | 91.0 KiB | 00m00s [120/174] Installing pkgconf-pkg-config 100% | 126.7 KiB/s | 1.8 KiB | 00m00s [121/174] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [122/174] Installing cyrus-sasl-lib-0:2 100% | 114.8 MiB/s | 2.3 MiB | 00m00s [123/174] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [124/174] Installing openldap-0:2.6.13- 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [125/174] Installing gnupg2-dirmngr-0:2 100% | 24.3 MiB/s | 621.1 KiB | 00m00s [126/174] Installing gnupg2-0:2.4.9-5.f 100% | 211.8 MiB/s | 6.6 MiB | 00m00s [127/174] Installing rpm-sign-libs-0:6. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [128/174] Installing gpgverify-0:2.2-3. 100% | 0.0 B/s | 9.4 KiB | 00m00s [129/174] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [130/174] Installing libnghttp2-0:1.66. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [131/174] Installing keyutils-libs-0:1. 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [132/174] Installing libcom_err-0:1.47. 100% | 62.7 MiB/s | 64.2 KiB | 00m00s [133/174] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [134/174] Installing krb5-libs-0:1.22.2 100% | 291.5 MiB/s | 2.3 MiB | 00m00s [135/174] Installing libssh-0:0.11.4-1. 100% | 280.2 MiB/s | 573.9 KiB | 00m00s [136/174] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [137/174] Installing libcurl-0:8.15.0-7 100% | 295.6 MiB/s | 908.2 KiB | 00m00s [138/174] Installing curl-0:8.15.0-7.fc 100% | 16.2 MiB/s | 463.8 KiB | 00m00s [139/174] Installing rpm-0:6.0.1-1.fc43 100% | 69.6 MiB/s | 2.6 MiB | 00m00s [140/174] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [141/174] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [142/174] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [143/174] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/174] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [145/174] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/174] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [147/174] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [148/174] Installing elfutils-libs-0:0. 100% | 225.7 MiB/s | 693.3 KiB | 00m00s [149/174] Installing elfutils-debuginfo 100% | 5.6 MiB/s | 86.4 KiB | 00m00s [150/174] Installing elfutils-0:0.195-1 100% | 133.6 MiB/s | 2.9 MiB | 00m00s [151/174] Installing binutils-0:2.45.1- 100% | 300.8 MiB/s | 27.4 MiB | 00m00s [152/174] Installing gdb-minimal-0:17.1 100% | 252.0 MiB/s | 13.6 MiB | 00m00s [153/174] Installing debugedit-0:5.2-3. 100% | 15.2 MiB/s | 217.3 KiB | 00m00s [154/174] Installing rpm-build-libs-0:6 100% | 129.5 MiB/s | 265.2 KiB | 00m00s [155/174] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [156/174] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [157/174] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [158/174] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [159/174] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [160/174] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [161/174] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [162/174] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [163/174] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [164/174] Installing rpm-build-0:6.0.1- 100% | 17.0 MiB/s | 296.4 KiB | 00m00s [165/174] Installing pyproject-srpm-mac 100% | 3.7 MiB/s | 3.8 KiB | 00m00s [166/174] Installing redhat-rpm-config- 100% | 92.3 MiB/s | 189.1 KiB | 00m00s [167/174] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [168/174] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [169/174] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [170/174] Installing python-srpm-macros 100% | 25.8 MiB/s | 52.8 KiB | 00m00s [171/174] Installing util-linux-0:2.41. 100% | 93.8 MiB/s | 3.6 MiB | 00m00s [172/174] Installing shadow-utils-2:4.1 100% | 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Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-3.fc43.x86_64 alternatives-1.33-3.fc43.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.4-1.fc43.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45.1-4.fc43.x86_64 build-reproducibility-srpm-macros-0.6.0-3.fc43.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-1.2.fc43.noarch cmake-srpm-macros-3.31.11-1.fc43.noarch coreutils-9.7-9.fc43.x86_64 coreutils-common-9.7-9.fc43.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20251125-1.git63291f8.fc43.noarch curl-8.15.0-7.fc43.x86_64 cyrus-sasl-lib-2.1.28-33.fc43.x86_64 debugedit-5.2-3.fc43.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc43.x86_64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.195-1.fc43.x86_64 elfutils-debuginfod-client-0.195-1.fc43.x86_64 elfutils-default-yama-scope-0.195-1.fc43.noarch elfutils-libelf-0.195-1.fc43.x86_64 elfutils-libs-0.195-1.fc43.x86_64 fedora-gpg-keys-43-1.noarch fedora-release-43-27.noarch fedora-release-common-43-27.noarch fedora-release-identity-basic-43-27.noarch fedora-repos-43-1.noarch file-5.47-3.fc43.x86_64 file-libs-5.47-3.fc43.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc43.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-17.1-4.fc43.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42-13.fc43.x86_64 glibc-common-2.42-13.fc43.x86_64 glibc-gconv-extra-2.42-13.fc43.x86_64 glibc-minimal-langpack-2.42-13.fc43.x86_64 gmp-6.3.0-4.fc43.x86_64 gnat-srpm-macros-7-1.fc43.noarch gnome-srpm-macros-1.0-1.fc43.noarch gnulib-l10n-20241231-1.fc43.noarch gnupg2-2.4.9-5.fc43.x86_64 gnupg2-dirmngr-2.4.9-5.fc43.x86_64 gnupg2-gpg-agent-2.4.9-5.fc43.x86_64 gnupg2-gpgconf-2.4.9-5.fc43.x86_64 gnupg2-keyboxd-2.4.9-5.fc43.x86_64 gnupg2-verify-2.4.9-5.fc43.x86_64 gnutls-3.8.13-1.fc43.x86_64 go-srpm-macros-3.8.0-1.fc43.noarch gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.13-4.fc43.x86_64 ima-evm-utils-libs-1.6.2-6.fc43.x86_64 info-7.2-7.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.22.2-4.fc43.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.4-1.fc43.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.5-1.fc43.x86_64 libbrotli-1.2.0-4.fc43.x86_64 libcap-2.76-4.fc43.x86_64 libcap-ng-0.9.3-1.fc43.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.15.0-7.fc43.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.5-1.fc43.x86_64 libffi-3.5.2-1.fc43.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-7.fc43.x86_64 libgcrypt-1.11.1-4.fc43.x86_64 libgomp-15.2.1-7.fc43.x86_64 libgpg-error-1.55-2.fc43.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.5-1.fc43.x86_64 libmount-2.41.5-1.fc43.x86_64 libnghttp2-1.66.0-2.fc43.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-7.fc43.x86_64 libsemanage-3.9-5.fc43.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.5-1.fc43.x86_64 libssh-0.11.4-1.fc43.x86_64 libssh-config-0.11.4-1.fc43.noarch libstdc++-15.2.1-7.fc43.x86_64 libtasn1-4.21.0-1.fc43.x86_64 libtool-ltdl-2.5.4-8.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.30-1.fc43.x86_64 libuuid-2.41.5-1.fc43.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.5.2-1.fc43.x86_64 libxml2-2.12.10-5.fc43.x86_64 libzstd-1.5.7-2.fc43.x86_64 lua-libs-5.4.8-4.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.13-1.fc43.x86_64 openssl-libs-3.5.7-1.fc43.x86_64 p11-kit-0.26.2-1.fc43.x86_64 p11-kit-trust-0.26.2-1.fc43.x86_64 package-notes-srpm-macros-0.20-1.fc43.noarch pam-libs-1.7.1-4.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.47-1.fc43.x86_64 pcre2-syntax-10.47-1.fc43.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20260116-1.fc43.noarch pyproject-srpm-macros-1.22.2-1.fc43.noarch python-srpm-macros-3.14-5.fc43.noarch qt5-srpm-macros-5.15.18-1.fc43.noarch qt6-srpm-macros-6.10.3-1.fc43.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-14.fc43.noarch rpm-6.0.1-1.fc43.x86_64 rpm-build-6.0.1-1.fc43.x86_64 rpm-build-libs-6.0.1-1.fc43.x86_64 rpm-libs-6.0.1-1.fc43.x86_64 rpm-sequoia-1.10.2-2.fc43.x86_64 rpm-sign-libs-6.0.1-1.fc43.x86_64 rust-srpm-macros-28.4-1.fc43.noarch sed-4.9-5.fc43.x86_64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.2-2.fc43.x86_64 systemd-libs-258.8-1.fc43.x86_64 systemd-standalone-sysusers-258.8-1.fc43.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-67.fc43.x86_64 util-linux-2.41.5-1.fc43.x86_64 util-linux-core-2.41.5-1.fc43.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-4.fc43.x86_64 xz-libs-5.8.1-4.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.3.3-2.fc43.x86_64 zstd-1.5.7-2.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1782604800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-2.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-x86_64-1782663477.143687/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-bpsnzv_6/openbabel/openbabel.spec) Config(child) 0 minutes 22 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.2.0-2.fc43.src.rpm) Config(fedora-43-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-bootstrap-1782663477.143687/root. INFO: reusing tmpfs at /var/lib/mock/fedora-43-x86_64-bootstrap-1782663477.143687/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-1782663477.143687/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.x86_64 rpm-sequoia-1.10.2-2.fc43.x86_64 dnf5-5.2.18.0-4.fc43.x86_64 dnf5-plugins-5.2.18.0-4.fc43.x86_64 Finish: chroot init Start: build phase for openbabel-3.2.0-2.fc43.src.rpm Start: build setup for openbabel-3.2.0-2.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1782604800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-2.fc43.src.rpm Updating and loading repositories: Copr repository 100% | 4.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 32.1 KiB/s | 28.7 KiB | 00m01s updates 100% | 22.6 KiB/s | 13.7 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: ImageMagick x86_64 1:7.1.1.47-3.fc43 fedora 88.2 KiB boost-devel x86_64 1.83.0-17.fc43 fedora 143.0 MiB cmake x86_64 3.31.11-1.fc43 updates 34.5 MiB desktop-file-utils x86_64 0.28-2.fc43 fedora 218.4 KiB dos2unix x86_64 7.5.5-1.fc43 updates 827.2 KiB eigen3-devel noarch 3.4.0-18.fc43 fedora 8.4 MiB gcc-c++ x86_64 15.2.1-7.fc43 updates 41.4 MiB inchi-devel x86_64 1.0.6-13.fc43 fedora 97.0 KiB libxml2-devel x86_64 2.12.10-5.fc43 fedora 3.4 MiB make x86_64 1:4.4.1-11.fc43 fedora 1.8 MiB perl-devel x86_64 4:5.42.2-523.fc43 updates 3.8 MiB perl-generators noarch 1.16-8.fc43 fedora 21.8 KiB python3-devel x86_64 3.14.6-1.fc43 updates 2.0 MiB python3-setuptools noarch 78.1.1-15.fc43 fedora 9.0 MiB rapidjson-devel x86_64 1.1.0^20241222git24b5e7a-3.fc43 fedora 785.8 KiB ruby-devel x86_64 3.4.8-29.fc43 updates 1.6 MiB swig x86_64 4.3.1-6.fc43 updates 6.3 MiB wxGTK-devel x86_64 3.2.8-2.fc43 fedora 74.2 KiB Installing dependencies: ImageMagick-libs x86_64 1:7.1.1.47-3.fc43 fedora 8.7 MiB LibRaw x86_64 0.21.5-1.fc43 updates 2.3 MiB SDL3 x86_64 3.4.10-1.fc43 updates 3.0 MiB abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB adobe-mappings-cmap noarch 20231115-3.fc43 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 20231115-3.fc43 fedora 582.1 KiB adobe-mappings-pdf noarch 20190401-10.fc43 fedora 4.4 MiB adwaita-cursor-theme noarch 49.0-1.fc43 fedora 11.4 MiB adwaita-icon-theme noarch 49.0-1.fc43 fedora 1.2 MiB adwaita-icon-theme-legacy noarch 46.2-4.fc43 fedora 2.1 MiB alsa-lib x86_64 1.2.16.1-1.fc43 updates 1.5 MiB annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc x86_64 12.99-1.fc43 fedora 1.0 MiB at-spi2-atk x86_64 2.58.6-1.fc43 updates 283.4 KiB at-spi2-atk-devel x86_64 2.58.6-1.fc43 updates 1.6 KiB at-spi2-core x86_64 2.58.6-1.fc43 updates 1.6 MiB at-spi2-core-devel x86_64 2.58.6-1.fc43 updates 4.3 MiB atk x86_64 2.58.6-1.fc43 updates 248.5 KiB atk-devel x86_64 2.58.6-1.fc43 updates 6.0 MiB avahi-glib x86_64 0.9~rc2-6.fc43 fedora 19.6 KiB avahi-libs x86_64 0.9~rc2-6.fc43 fedora 171.6 KiB boost x86_64 1.83.0-17.fc43 fedora 1.3 KiB boost-atomic x86_64 1.83.0-17.fc43 fedora 20.9 KiB boost-chrono x86_64 1.83.0-17.fc43 fedora 37.5 KiB boost-container x86_64 1.83.0-17.fc43 fedora 65.4 KiB boost-context x86_64 1.83.0-17.fc43 fedora 12.4 KiB boost-contract x86_64 1.83.0-17.fc43 fedora 99.1 KiB boost-coroutine x86_64 1.83.0-17.fc43 fedora 21.1 KiB boost-date-time x86_64 1.83.0-17.fc43 fedora 12.2 KiB boost-fiber x86_64 1.83.0-17.fc43 fedora 78.7 KiB boost-filesystem x86_64 1.83.0-17.fc43 fedora 143.6 KiB boost-graph x86_64 1.83.0-17.fc43 fedora 363.1 KiB boost-iostreams x86_64 1.83.0-17.fc43 fedora 90.6 KiB boost-json x86_64 1.83.0-17.fc43 fedora 333.1 KiB boost-locale x86_64 1.83.0-17.fc43 fedora 617.7 KiB boost-log x86_64 1.83.0-17.fc43 fedora 1.5 MiB boost-math x86_64 1.83.0-17.fc43 fedora 642.6 KiB boost-nowide x86_64 1.83.0-17.fc43 fedora 20.8 KiB boost-numpy3 x86_64 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31.1 KiB cairo-gobject-devel x86_64 1.18.4-2.fc43 fedora 7.0 KiB cdparanoia-libs x86_64 10.2-48.fc43 fedora 113.5 KiB cmake-data noarch 3.31.11-1.fc43 updates 8.5 MiB cmake-filesystem x86_64 3.31.11-1.fc43 updates 0.0 B cmake-rpm-macros noarch 3.31.11-1.fc43 updates 8.2 KiB colord-libs x86_64 1.4.8-2.fc43 fedora 830.7 KiB cpp x86_64 15.2.1-7.fc43 updates 38.0 MiB cups-filesystem noarch 1:2.4.19-3.fc43 updates 0.0 B cups-libs x86_64 1:2.4.19-3.fc43 updates 618.5 KiB dbus x86_64 1:1.16.2-1.fc43 updates 0.0 B dbus-devel x86_64 1:1.16.2-1.fc43 updates 131.7 KiB dbus-libs x86_64 1:1.16.2-1.fc43 updates 345.4 KiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B enchant2 x86_64 2.8.16-1.fc43 updates 207.1 KiB expat x86_64 2.8.1-1.fc43 updates 315.4 KiB fftw-libs-double x86_64 3.3.10-16.fc43 fedora 3.4 MiB flac-libs x86_64 1.5.0-5.fc43 updates 611.5 KiB flexiblas x86_64 3.5.0-1.fc43 updates 38.0 KiB flexiblas-netlib x86_64 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perl-Time-HiRes x86_64 4:1.9778-520.fc43 fedora 115.8 KiB perl-Time-Local noarch 2:1.350-520.fc43 fedora 69.0 KiB perl-URI noarch 5.34-2.fc43 updates 268.0 KiB perl-base noarch 2.27-523.fc43 updates 12.6 KiB perl-constant noarch 1.33-521.fc43 fedora 26.2 KiB perl-fields noarch 2.27-523.fc43 updates 11.9 KiB perl-if noarch 0.61.000-523.fc43 updates 5.8 KiB perl-interpreter x86_64 4:5.42.2-523.fc43 updates 118.8 KiB perl-lib x86_64 0.65-523.fc43 updates 8.5 KiB perl-libnet noarch 3.15-521.fc43 fedora 289.4 KiB perl-libs x86_64 4:5.42.2-523.fc43 updates 11.5 MiB perl-locale noarch 1.13-523.fc43 updates 6.1 KiB perl-macros noarch 4:5.42.2-523.fc43 updates 5.5 KiB perl-mro x86_64 1.29-523.fc43 updates 41.6 KiB perl-overload noarch 1.40-523.fc43 updates 71.6 KiB perl-overloading noarch 0.02-523.fc43 updates 4.9 KiB perl-parent noarch 1:0.244-520.fc43 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-520.fc43 fedora 317.5 KiB perl-vars noarch 1.05-523.fc43 updates 3.9 KiB perl-version x86_64 9:0.99.33-521.fc43 fedora 128.7 KiB pixman x86_64 0.46.2-2.fc43 fedora 710.3 KiB pixman-devel x86_64 0.46.2-2.fc43 fedora 56.1 KiB pulseaudio-libs x86_64 17.0-9.fc43 updates 3.4 MiB pyproject-rpm-macros noarch 1.22.2-1.fc43 copr_base 147.0 KiB python-pip-wheel noarch 26.1.1-7.fc43 copr_base 1.2 MiB python-rpm-macros noarch 3.14-5.fc43 fedora 23.2 KiB python3 x86_64 3.14.6-1.fc43 updates 28.7 KiB python3-libs x86_64 3.14.6-1.fc43 updates 43.3 MiB python3-numpy x86_64 1:2.3.5-1.fc43 updates 41.4 MiB python3-numpy-f2py x86_64 1:2.3.5-1.fc43 updates 2.1 MiB python3-packaging noarch 25.0-7.fc43 fedora 607.4 KiB python3-pyparsing noarch 3.1.2-14.fc43 fedora 1.0 MiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-5.fc43 fedora 6.5 KiB rav1e-libs x86_64 0.8.1-2.fc43 updates 3.1 MiB rhash x86_64 1.4.5-3.fc43 fedora 351.1 KiB ruby x86_64 3.4.8-29.fc43 updates 85.5 KiB ruby-default-gems noarch 3.4.8-29.fc43 updates 66.1 KiB ruby-libs x86_64 3.4.8-29.fc43 updates 15.1 MiB rubygem-io-console x86_64 0.8.1-29.fc43 updates 33.2 KiB rubygem-psych x86_64 5.2.2-29.fc43 updates 132.6 KiB rubygems noarch 3.6.9-29.fc43 updates 1.4 MiB rubypick noarch 1.1.1-23.fc43 fedora 4.4 KiB sdl2-compat x86_64 2.32.68-1.fc43 updates 408.3 KiB shared-mime-info x86_64 2.4-2.fc43 fedora 5.2 MiB spirv-tools-libs x86_64 2026.1-2.fc43 updates 5.9 MiB svt-av1-libs x86_64 3.1.2-1.fc43 fedora 5.6 MiB sysprof-capture-devel x86_64 49.0-1.fc43 fedora 803.7 KiB systemd-devel x86_64 258.8-1.fc43 updates 615.5 KiB systemd-rpm-macros noarch 258.8-1.fc43 updates 8.5 KiB systemtap-sdt-devel x86_64 5.5-3.fc43 copr_base 184.5 KiB systemtap-sdt-dtrace x86_64 5.5-3.fc43 copr_base 181.1 KiB tzdata noarch 2026b-1.fc43 updates 1.6 MiB urw-base35-bookman-fonts noarch 20200910-26.fc43 fedora 1.4 MiB urw-base35-c059-fonts noarch 20200910-26.fc43 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-26.fc43 fedora 84.3 KiB urw-base35-fonts noarch 20200910-26.fc43 fedora 5.3 KiB urw-base35-fonts-common noarch 20200910-26.fc43 fedora 37.4 KiB urw-base35-gothic-fonts noarch 20200910-26.fc43 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-26.fc43 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-26.fc43 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-26.fc43 fedora 2.4 MiB urw-base35-p052-fonts noarch 20200910-26.fc43 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-26.fc43 fedora 64.9 KiB urw-base35-z003-fonts noarch 20200910-26.fc43 fedora 390.8 KiB vim-filesystem noarch 2:9.2.597-1.fc43 updates 40.0 B vulkan-loader x86_64 1.4.341.0-1.fc43 updates 569.6 KiB wayland-devel x86_64 1.24.0-1.fc43 fedora 691.9 KiB webkit2gtk4.1 x86_64 2.52.4-1.fc43 updates 91.0 MiB wxBase x86_64 3.2.8-2.fc43 fedora 2.9 MiB wxBase-devel x86_64 3.2.8-2.fc43 fedora 6.7 MiB wxGTK x86_64 3.2.8-2.fc43 fedora 16.4 MiB wxGTK-gl x86_64 3.2.8-2.fc43 fedora 102.6 KiB wxGTK-i18n noarch 3.2.8-2.fc43 fedora 5.7 MiB wxGTK-media x86_64 3.2.8-2.fc43 fedora 82.3 KiB wxGTK-webview x86_64 3.2.8-2.fc43 fedora 200.0 KiB xdg-dbus-proxy x86_64 0.1.7-1.fc43 updates 94.8 KiB xkeyboard-config noarch 2.46-1.fc43 updates 10.2 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-5.fc43 fedora 1.7 MiB xprop x86_64 1.2.8-4.fc43 fedora 54.7 KiB xz-devel x86_64 1:5.8.1-4.fc43 updates 258.8 KiB zlib-ng-compat-devel x86_64 2.3.3-2.fc43 updates 107.0 KiB Transaction Summary: Installing: 454 packages Total size of inbound packages is 382 MiB. Need to download 382 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1782604800 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-2.fc43.src.rpm Updating and loading repositories: Copr repository 100% | 373.0 B/s | 1.5 KiB | 00m04s fedora 100% | 6.3 KiB/s | 28.7 KiB | 00m05s updates 100% | 3.1 KiB/s | 13.7 KiB | 00m04s Repositories loaded. Nothing to do. Package "ImageMagick-1:7.1.1.47-3.fc43.x86_64" is already installed. Package "boost-devel-1.83.0-17.fc43.x86_64" is already installed. Package "cmake-3.31.11-1.fc43.x86_64" is already installed. Package "desktop-file-utils-0.28-2.fc43.x86_64" is already installed. Package "dos2unix-7.5.5-1.fc43.x86_64" is already installed. Package "eigen3-devel-3.4.0-18.fc43.noarch" is already installed. Package "gcc-c++-15.2.1-7.fc43.x86_64" is already installed. Package "inchi-devel-1.0.6-13.fc43.x86_64" is already installed. Package "libxml2-devel-2.12.10-5.fc43.x86_64" is already installed. Package "make-1:4.4.1-11.fc43.x86_64" is already installed. Package "perl-devel-4:5.42.2-523.fc43.x86_64" is already installed. Package "perl-generators-1.16-8.fc43.noarch" is already installed. Package "python3-devel-3.14.6-1.fc43.x86_64" is already installed. Package "python3-setuptools-78.1.1-15.fc43.noarch" is already installed. Package "rapidjson-devel-1.1.0^20241222git24b5e7a-3.fc43.x86_64" is already installed. Package "ruby-devel-3.4.8-29.fc43.x86_64" is already installed. Package "swig-4.3.1-6.fc43.x86_64" is already installed. Package "wxGTK-devel-3.2.8-2.fc43.x86_64" is already installed. Finish: build setup for openbabel-3.2.0-2.fc43.src.rpm Start: rpmbuild openbabel-3.2.0-2.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1782604800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.iXzvr7 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.5LCMP5 + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + cd /builddir/build/BUILD/openbabel-3.2.0-build + rm -rf openbabel-openbabel-3-2-0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-2-0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-2-0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (openbabel-perl.patch): + echo 'Patch #0 (openbabel-perl.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 patching file scripts/CMakeLists.txt Patch #1 (openbabel-plugindir.patch): + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 patching file CMakeLists.txt Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file openbabel-3.pc.cmake + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + magick src/GUI/babel.xpm -transparent white babel.png + pushd doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html + '[' -f roundtrip.html ']' ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YUvdvR + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd openbabel-openbabel-3-2-0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib64/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib64/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG:BOOL=ON -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -DEigen3_DIR:PATH=/usr/share/cmake/eigen3 -DRUBY_INSTDIR:PATH=/usr/lib64/ruby/vendor_ruby -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.10") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.8") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for xdrstdio_create -- Looking for xdrstdio_create - not found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,cobol,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugzilla.redhat.com/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-15.2.1-build/gcc-15.2.1-20260123/obj-x86_64-redhat-linux/isl-install --enable-offload-targets=nvptx-none,amdgcn-amdhsa --enable-offload-defaulted --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1 --disable-libssp Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.1 20260123 (Red Hat 15.2.1-7) (GCC) -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: program_options iostreams -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Perl: /usr/bin/perl (found version "5.42.2") -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found Python: /usr/bin/python3.14 (found version "3.14.6") found components: Interpreter -- Found SWIG: /usr/bin/swig (found version "4.3.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.3.1", minimum required is "2.0") -- Found Python: /usr/bin/python3.14 (found version "3.14.6") found components: Interpreter Development Development.Module Development.Embed -- Python bindings will be compiled -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.42.2") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found suitable version "3.4.8", minimum required is "1.8.0") -- Ruby bindings will be compiled -- Configuring done (5.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR PYTHON_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -P /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 -B/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/CMakeFiles /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f data/CMakeFiles/data_headers.dir/build.make data/CMakeFiles/data_headers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data/CMakeFiles/data_headers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f data/CMakeFiles/data_headers.dir/build.make data/CMakeFiles/data_headers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 0%] Generating resdata.h [ 0%] Generating bondtyp.h [ 0%] Generating atomtyp.h [ 0%] Generating phmodeldata.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/phmodel.txt PhModelData PhModelData > phmodeldata.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/resdata.txt ResidueData ResidueData > resdata.h [ 0%] Generating torlib.h [ 0%] Generating types.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/types.txt TypesData TypesData > types.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h [ 1%] Generating atomizationenergies.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h [ 1%] Generating spacegroups.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h [ 2%] Generating ringtyp.h cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 2%] Built target data_headers /usr/bin/gmake -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 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/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/base.cpp cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o CMakeFiles/openbabel.dir/bitvec.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bitvec.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/alias.h:20, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF CMakeFiles/openbabel.dir/bond.cpp.o.d -o CMakeFiles/openbabel.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp: In constructor ‘OpenBabel::OBBond::OBBond()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bondtyper.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -MF CMakeFiles/openbabel.dir/macrocycle.cpp.o.d -o CMakeFiles/openbabel.dir/macrocycle.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF CMakeFiles/openbabel.dir/chains.cpp.o.d -o CMakeFiles/openbabel.dir/chains.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF CMakeFiles/openbabel.dir/elements.cpp.o.d -o CMakeFiles/openbabel.dir/elements.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/elements.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprint.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/format.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:435:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 435 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:437:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 437 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:447:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 447 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:457:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 457 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintEnergy()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:526:53: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 526 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:543:54: warning: ‘static double OpenBabel::OBForceField::VectorAngleDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 543 | theta = OBForceField::VectorAngleDerivative(da, db, dc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1585:19: note: declared here 1585 | static double VectorAngleDerivative(vector3 &a, vector3 &b, vector3 &c); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:562:56: warning: ‘static double OpenBabel::OBForceField::VectorTorsionDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 562 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1618:19: note: declared here 1618 | static double VectorTorsionDerivative(vector3 &a, vector3 &b, vector3 &c, vector3 &d); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:709:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:717:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:725:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:733:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 733 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:741:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 741 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 749 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::SystematicRotorSearchInitialize(unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1224:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1224 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1345:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1345 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1393:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1393 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1397:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1397 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1410 | for (int i=0; i >&, std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1619:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1619 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1638:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1638 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1678:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1678 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp: In member function ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:31, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::GetOriginVector(double*) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:194:24: warning: ‘void OpenBabel::OBFloatGrid::GetMin(double*)’ is deprecated: Use GetMin() instead [-Wdeprecated-declarations] 194 | d->floatGrid.GetMin(o); | ~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:132:10: note: declared here 132 | void GetMin(double *a) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::SetLimits(const double*, const double*, const double*, const double*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:235:27: warning: ‘void OpenBabel::OBFloatGrid::SetLimits(const double*, const double*, const double*, const double*)’ is deprecated: Use vector version instead [-Wdeprecated-declarations] 235 | d->floatGrid.SetLimits(origin, x, y, z); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:229:10: note: declared here 229 | void SetLimits(const double origin[3], const double x[3], const double y[3], | ^~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp: In function ‘bool OpenBabel::NeedsDoubleBond(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:100:15: warning: unused variable ‘nbr’ [-Wunused-variable] 100 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/locale.cpp cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF CMakeFiles/openbabel.dir/matrix.cpp.o.d -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/matrix.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:425:5: warning: multi-line comment [-Wcomment] 425 | // / \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:970:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 970 | for (i=0; i&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:1473:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1473 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1480 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2022 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2032:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2032 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2047:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2047 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2053 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2120:98: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2120 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2251:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2251 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2253 | for (k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2277 | for (j=1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2588 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::flipSmall(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2998:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2998 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3037 | for (i=0; i, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3116:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:26: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘bool OpenBabel::compareAtoms(int, int, std::vector*>)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3306:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3306 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3314:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3314 | for (i=0; i*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3324 | for (int i=0; i&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3340:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const __gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘const int’} [-Wsign-compare] 3340 | if (l <= maxValues[i]) { /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TSimpleMolecule::correctOverlapped()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3389:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3389 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3442 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3452 | for (i=0; i*, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3555:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3555 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4231:19: warning: variable ‘nBondsOld’ set but not used [-Wunused-but-set-variable] 4231 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable] 4232 | bool test,test1,test2; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:15: warning: variable ‘test1’ set but not used [-Wunused-but-set-variable] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:21: warning: variable ‘test2’ set but not used [-Wunused-but-set-variable] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:40: warning: variable ‘xCenter’ set but not used [-Wunused-but-set-variable] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:48: warning: variable ‘yCenter’ set but not used [-Wunused-but-set-variable] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4430:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4430 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4433 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4606 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4611 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4616 | for (i=0; i*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4651:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 4651 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4652:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4652 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4681:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4681 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4868:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4868 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4869:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4869 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4870:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4870 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4871:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4871 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4872:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4872 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4873:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4873 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4874:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4874 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5047:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 5047 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4855:9: warning: variable ‘cycleNumber’ set but not used [-Wunused-but-set-variable] 4855 | int cycleNumber; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5210:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5210 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5211:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5211 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5241:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5241 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5286 | for (i=0; i*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5320:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5320 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5337:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5337 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5367 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5377 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5408:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5408 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5421:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5421 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5437:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5437 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5676:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5676 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5724:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5724 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5727 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5735 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5807 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5837 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5903 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5915 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5931 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5954 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5969 | for (frCount=0; frCount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6009 | for (i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6016 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6035 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6043 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6044 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6045 | for (i=0; i::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 6367 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6368:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6368 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6555:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6555 | for (j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6600 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6602:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6602 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6608 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6618:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6618 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6621:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6621 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6632:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6632 | if (k == 1) for (i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6651 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6852:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6852 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6854:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6854 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6859 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6873 | for (j=i+1; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6881 | for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6896 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6689:26: warning: variable ‘n4’ set but not used [-Wunused-but-set-variable] 6689 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6969:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6969 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7033:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7033 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘int OpenBabel::groupRedraw(OBMol*, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7168:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7168 | for (i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7176 | for (int i=0; i&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7218 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7221:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7221 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7242:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7242 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7245:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7245 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::NumHvyAtoms() const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: warning: unnecessary parentheses in declaration of ‘i’ [-Wparentheses] 811 | vector::const_iterator(i); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: note: remove parentheses 811 | vector::const_iterator(i); | ^~~ | - - /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:1229:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1229 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘bool OpenBabel::OBMol::ConvertZeroBonds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3935:31: warning: unused variable ‘b’ [-Wunused-variable] 3935 | FOR_BONDS_OF_ATOM(b, bgn) { bcount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3937:31: warning: unused variable ‘b’ [-Wunused-variable] 3937 | FOR_BONDS_OF_ATOM(b, end) { ecount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddIgnore(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:624:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM [(double *)&constraint + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddIgnore(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:621:20: note: ‘constraint’ declared here 621 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1433:29: warning: ‘minj’ may be used uninitialized [-Wmaybe-uninitialized] 1433 | rotorKey[idx + 1] = minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1359:21: note: ‘minj’ was declared here 1359 | unsigned int j, minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1450:11: warning: ‘minE’ may be used uninitialized [-Wmaybe-uninitialized] 1450 | if (minE < best_minE) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1360:22: note: ‘minE’ was declared here 1360 | double currentE, minE, best_minE; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1771:46: warning: ‘bestE’ may be used uninitialized [-Wmaybe-uninitialized] 1771 | energies[j] = exp(-1.0*fabs(currentE - bestE) / 2.5); | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1723:12: note: ‘bestE’ was declared here 1723 | double bestE, worstE, currentE; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1776:25: warning: ‘worstE’ may be used uninitialized [-Wmaybe-uninitialized] 1776 | if (fabs(worstE - bestE) < 1.0e-3) | ~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1723:19: note: ‘worstE’ was declared here 1723 | double bestE, worstE, currentE; | ^~~~~~ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF CMakeFiles/openbabel.dir/oberror.cpp.o.d -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/oberror.cpp [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4348:16: warning: ‘r1’ may be used uninitialized [-Wmaybe-uninitialized] 4348 | xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; | ~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4235:12: note: ‘r1’ was declared here 4235 | double r1; | ^~ [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/op.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In member function ‘bool OpenBabel::OBSmartsPattern::Init(const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1775 | if (strlen(buffer) > MaxSmartsLength) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1778:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1778 | delete[] _buffer; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In destructor ‘virtual OpenBabel::OBSmartsPattern::~OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/patty.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/plugin.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp:429:15: warning: ‘void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)’ defined but not used [-Wunused-function] 429 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp: In member function ‘void OpenBabel::OBReactionFacadePrivate::FindComponents()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:122:15: warning: unused variable ‘atm’ [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF CMakeFiles/openbabel.dir/ring.cpp.o.d -o CMakeFiles/openbabel.dir/ring.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In constructor ‘OpenBabel::OBRingSearch::OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In destructor ‘OpenBabel::OBRingSearch::~OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘void OpenBabel::OBRotamerList::AddRotamer(std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:410:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 412 | while (angle > 360.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:543:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 545 | while (angle > 360.0) | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp: In member function ‘bool OpenBabel::OBRotorList::SetEvalAtoms(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:335:28: warning: ‘void OpenBabel::OBRotor::SetEvalAtoms(OpenBabel::OBBitVec&)’ is deprecated [-Wdeprecated-declarations] 335 | rotor->SetEvalAtoms(eval); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:435:10: note: declared here 435 | void SetEvalAtoms(OBBitVec &bv) { _evalatoms = bv; } | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tokenst.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:250:12: warning: unused variable ‘score’ [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:352:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:812:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 812 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:877:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 877 | if (iniche > -1) | ~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1042:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1042 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1057:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1057 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1070:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1070 | if (imax == -1) | ~~~~~^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1087:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1087 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1013:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 1013 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1176 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1185:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1185 | if (iround < imax) | ~~~~~~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1193:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1193 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1218:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1218 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:23: warning: unused variable ‘lowest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:37: warning: unused variable ‘highest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:189:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:361:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 361 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:55: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 55 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:56: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 56 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:642:3: warning: multi-line comment [-Wcomment] 642 | // \ | ^ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/dlhandler_unix.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:284:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1028:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable] 1028 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1033:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable] 1033 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:99: warning: expression does not compute the number of elements in this array; element type is ‘const float’, not ‘double’ [-Wsizeof-array-div] 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:100: note: add parentheses around ‘sizeof (double)’ to silence this warning 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1241:24: note: array ‘dashpattern’ declared here 1241 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘OpenBabel::OBConformerSearch::MakeSelection()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:568:31: warning: ‘highest’ may be used uninitialized [-Wmaybe-uninitialized] 568 | double sum = 0.0, lowest, highest; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:25: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBConformerSearch::NextGeneration()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBConformerSearch::NextGeneration()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:16: note: ‘generator’ declared here 473 | OBRandomMT generator{}; | ^~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘min_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:14: note: ‘min_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘max_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:21: note: ‘max_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘min_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:14: note: ‘min_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘max_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:21: note: ‘max_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘min_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:14: note: ‘min_z’ was declared here 436 | double min_z, max_z; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘max_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:21: note: ‘max_z’ was declared here 436 | double min_z, max_z; | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/stereo.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetranonplanar.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetraplanar.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/squareplanar.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/cistrans.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/tetrahedral.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp: In function ‘bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2795:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2951 | return true; | ^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/facade.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/gen3dstereohelper.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:31: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:16: note: ‘generator’ declared here 1059 | OBRandomMT generator{}; | ^~~~~~~~~ [ 16%] Linking CXX shared library ../lib64/libopenbabel.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In function ‘CreateAtom’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:488:53: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 488 | AtomSpec *tmp = new AtomSpec[pat->aalloc]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:494:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 494 | pat->atom = new AtomSpec[pat->aalloc]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/openbabel.dir/link.d -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libopenbabel.so.8 -o ../lib64/libopenbabel.so.8.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/macrocycle.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o CMakeFiles/openbabel.dir/chargemodel.cpp.o CMakeFiles/openbabel.dir/data.cpp.o CMakeFiles/openbabel.dir/data_utilities.cpp.o CMakeFiles/openbabel.dir/descriptor.cpp.o CMakeFiles/openbabel.dir/elements.cpp.o CMakeFiles/openbabel.dir/fingerprint.cpp.o CMakeFiles/openbabel.dir/forcefield.cpp.o CMakeFiles/openbabel.dir/format.cpp.o CMakeFiles/openbabel.dir/generic.cpp.o CMakeFiles/openbabel.dir/graphsym.cpp.o CMakeFiles/openbabel.dir/grid.cpp.o CMakeFiles/openbabel.dir/griddata.cpp.o CMakeFiles/openbabel.dir/isomorphism.cpp.o CMakeFiles/openbabel.dir/kekulize.cpp.o CMakeFiles/openbabel.dir/locale.cpp.o CMakeFiles/openbabel.dir/matrix.cpp.o CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lm -ldl /usr/lib64/libz.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.8.0.0 ../lib64/libopenbabel.so.8 ../lib64/libopenbabel.so gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 16%] Built target openbabel /usr/bin/gmake -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 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'/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' gmake[2]: Leaving directory 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cansmidescriptor.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addfilename.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/cmpdfilter.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addinindex.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addpolarh.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/groupcontrib.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addnonpolarh.cpp [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp [ 17%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:29: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 104B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 105B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGaff &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGaff::OBFFElectrostaticCalculationGaff(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:72:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1055:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp: In member function ‘virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:91:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [ 19%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 [ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delpolarh.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delnonpolarh.cpp [ 19%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen2D.cpp [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_descriptors.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.8.0.0 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_fingerprints.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.8.0.0 cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 20%] Built target plugin_fingerprints [ 20%] Built target plugin_descriptors /usr/bin/gmake -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake "--color=" [ 20%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:40: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:58: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:41: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:60: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:42: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:62: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:43: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:64: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:39: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:56: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:39: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:56: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:49: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:76: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: warning: ‘MEM[(const struct OBFFVDWCalculationGhemical &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 104B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 105B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGhemical &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp: In member function ‘virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:282:10: warning: unused variable ‘done’ [-Wunused-variable] 282 | bool done = true; | ^~~~ [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:12: note: ‘index’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘first_rj’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:29: note: ‘first_rj’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 22%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In constructor ‘OpenBabel::OBSmilesParser::OBSmilesParser(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:291:10: warning: ‘OpenBabel::OBSmilesParser::_preserve_aromaticity’ will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:289:9: warning: ‘int OpenBabel::OBSmilesParser::_rxnrole’ [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:669:15: warning: variable ‘atom’ set but not used [-Wunused-but-set-variable] 669 | OBAtom* atom; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2232:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2232 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2717:10: warning: variable ‘symbol’ set but not used [-Wunused-but-set-variable] 2717 | char symbol[10]; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2721:10: warning: unused variable ‘normalValence’ [-Wunused-variable] 2721 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2722:10: warning: unused variable ‘writeExplicitHydrogen’ [-Wunused-variable] 2722 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3171:22: warning: unused variable ‘bond_order’ [-Wunused-variable] 3171 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3166:20: warning: unused variable ‘nbr_bond_order’ [-Wunused-variable] 3166 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3318:11: warning: unused variable ‘bo’ [-Wunused-variable] 3318 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3931:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3931 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3937 | for (int i=0; i::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_theta’ may be used uninitialized [-Wmaybe-uninitialized] 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rab’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rbc’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: warning: ‘MEM[(const struct OBFFVDWCalculationMMFF94 &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationMMFF94::OBFFVDWCalculationMMFF94(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:78:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3616:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: warning: ‘MEM[(const struct OBFFElectrostaticCalculationMMFF94 &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationMMFF94::OBFFElectrostaticCalculationMMFF94(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:89:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3678:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/loader.cpp [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4336:13: warning: ‘etot’ may be used uninitialized [-Wmaybe-uninitialized] 4336 | delta = (Energy() - etot); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:12: note: ‘etot’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:31: In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4308:15: /usr/include/bits/stdio2.h:68:35: warning: ‘ebond’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:18: note: ‘ebond’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4312:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eangle’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:25: note: ‘eangle’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4320:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eoop’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:33: note: ‘eoop’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4316:15: /usr/include/bits/stdio2.h:68:35: warning: ‘estbn’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:39: note: ‘estbn’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4324:15: /usr/include/bits/stdio2.h:68:35: warning: ‘etor’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:46: note: ‘etor’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4328:15: /usr/include/bits/stdio2.h:68:35: warning: ‘evdw’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:52: note: ‘evdw’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4332:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eeq’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:58: note: ‘eeq’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp: In member function ‘virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:95:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 95 | if(!pConv) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:98:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 98 | if(pConv->IsFirstInput()) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2897 | snprintf(tcount, 10, "%d", hcount); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:23: In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2889 | snprintf(tcount, 10, "%d", i); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:32: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:31: note: directive argument in the range [-2147483648, 99] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 12 bytes into a destination of size 8 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘void OpenBabel::OBFFElectrostaticCalculationUFF::Compute()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:516:49: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 516 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/phmodel.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/optransform.h:19, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:37: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:54: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: warning: ‘MEM[(const struct OBFFElectrostaticCalculationUFF &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/readconformers.cpp [ 23%] Linking CXX shared module ../../lib64/smilesformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/sort.cpp In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rij’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rjk’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rik’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 156B]’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘anglecalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘anglecalc.n’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ [ 24%] Linking CXX shared module ../lib64/plugin_forcefields.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:15: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.h:18, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp: In member function ‘virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/smilesformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 25%] Built target smilesformat [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/xout.cpp [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp: In member function ‘virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp: In member function ‘void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ [ 26%] Linking CXX shared module ../lib64/plugin_ops.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_ops.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 26%] Built target plugin_ops /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 27%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_forcefields.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../lib64/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 27%] Built target plugin_forcefields /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 28%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 51 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 64 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 77 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 90 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 103 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 116 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 119 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 121 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:794:10: warning: unused variable ‘ch’ [-Wunused-variable] 794 | char ch = ifs.peek(); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 134 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 137 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 139 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 152 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 155 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 170 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 173 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 188 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 191 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 193 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 209 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 226 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 240 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 243 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 245 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 257 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 260 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 262 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 274 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 277 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 279 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 291 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 294 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 296 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 298 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 310 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 313 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 315 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 317 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 329 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 332 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 334 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 336 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 348 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 351 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 353 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 355 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 367 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 370 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 372 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 374 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 385 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 388 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 390 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 392 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 394 | if (val <= 3) return 3; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1502:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 1502 | bool chiralWatch=false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:86:15: warning: ‘bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)’ defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ [ 28%] Linking CXX shared module ../../lib64/mol2format.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:22: note: directive argument in the range [-2147483648, 2147483547] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/iomanip:47, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:27: In function ‘snprintf’, inlined from ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map, std::allocator > >*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a1_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:31: note: ‘a1_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a2_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:42: note: ‘a2_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mol2format.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 28%] Built target mol2format /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 28%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:612:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 612 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 681 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:17: In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:70: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 701 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:29: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32761 [-Wstringop-truncation] 299 | strncpy(integerBuffer, buffer+columnAsSpecifiedInPDB-1, 5); | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32756 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32751 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32746 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32741 [-Wstringop-truncation] [ 28%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 28%] Linking CXX shared module ../../lib64/mdlformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp: In member function ‘virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:194:52: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 194 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:200:54: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 200 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 29%] Linking CXX shared module ../../lib64/pdbformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 [ 30%] Linking CXX shared module ../lib64/plugin_charges.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pdbformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 30%] Built target pdbformat [ 30%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/getinchi.cpp [ 30%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [ 30%] Linking CXX shared module ../../lib64/inchiformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/include/inchi/ixa.h:204:3: warning: type ‘IXA_INCHIBUILDER_OPTION’ violates the C++ One Definition Rule [-Wodr] 204 | } IXA_INCHIBUILDER_OPTION; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/../inchi/ixa.h:217:3: note: an enum with different number of values is defined in another translation unit 217 | } IXA_INCHIBUILDER_OPTION; | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mdlformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 30%] Built target mdlformat /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 30%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 30%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcopyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/copyformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 30%] Linking CXX shared module ../../lib64/copyformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/copyformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 30%] Built target copyformat [ 30%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 118 | for (int i=0; i _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [ 31%] Linking CXX shared module ../../lib64/molreport.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/asciiformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 31%] Built target asciiformat /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 31%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnulformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nulformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/molreport.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 31%] Built target molreport /usr/bin/gmake -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 32%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp [ 32%] Linking CXX shared module ../../lib64/nulformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 32%] Linking CXX shared module ../../lib64/MNAformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 113 | ostream& ofs = *pConv->GetOutStream(); | ^~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/plugin_charges.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -lm -ldl /usr/lib64/libz.so ../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 32%] Built target plugin_charges [ 32%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/commandpainter.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/nulformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 32%] Built target nulformat /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 33%] Linking CXX shared module ../../lib64/painterformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:173:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:807:17: warning: unused variable ‘title’ [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/MNAformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Built target MNAformat /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/painterformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Built target painterformat /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/textformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:248:18: warning: unused variable ‘n’ [-Wunused-variable] 248 | unsigned int n=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:273:8: warning: unused variable ‘ret’ [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ [ 33%] Linking CXX shared module ../../lib64/reportformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 [ 33%] Linking CXX shared module ../../lib64/textformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 [ 33%] Linking CXX shared module ../../lib64/povrayformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/reportformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/textformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Built target reportformat /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend [ 33%] Built target textformat gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/titleformat.cpp [ 33%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 33%] Linking CXX shared module ../../lib64/svgformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 [ 33%] Linking CXX shared module ../../lib64/titleformat.so /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/titleformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Built target titleformat /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pngformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/povrayformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Built target povrayformat /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/svgformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 33%] Built target svgformat /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 34%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 35%] Linking CXX shared module ../../lib64/confabreport.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:99:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/confabreport.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 35%] Built target confabreport /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" [ 36%] Linking CXX shared module ../../lib64/pngformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 37%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ [ 37%] Linking CXX shared module ../../lib64/acesformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 [ 37%] Linking CXX shared module ../../lib64/abinitformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pngformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 37%] Built target pngformat /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 37%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/abinitformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 37%] Built target abinitformat /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 38%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcastepformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/acesformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 38%] Built target acesformat /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 39%] Linking CXX shared module ../../lib64/aoforceformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘pressure’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:12: note: ‘pressure’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘volume’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:22: note: ‘volume’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:16: In function ‘snprintf’, inlined from ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:211:17: /usr/include/bits/stdio2.h:68:35: warning: ‘enthalpy’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:30: note: ‘enthalpy’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ [ 39%] Linking CXX shared module ../../lib64/castepformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/aoforceformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Built target aoforceformat /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp [ 39%] Linking CXX shared module ../../lib64/adfformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/castepformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Built target castepformat /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:147:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable] 147 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:311:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 311 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:331:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 331 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [ 39%] Linking CXX shared module ../../lib64/crystal09format.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 [ 39%] Linking CXX shared module ../../lib64/daltonformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 [ 39%] Linking CXX shared module ../../lib64/dmolformat.so cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/dmolformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Built target dmolformat /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/crystal09format.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Built target crystal09format /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/adfformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" [ 39%] Built target adfformat /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/daltonformat.dir/link.d -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -lm -ldl /usr/lib64/libz.so /usr/lib64/libcairo.so /usr/lib64/libinchi.so -lm ../../lib64/libopenbabel.so.8.0.0 gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Built target daltonformat /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' [ 39%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:589:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 589 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:233:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for(i=start+1; (i