Warning: Permanently added '34.204.77.86' (ED25519) to the list of known hosts. INFO: Calling: curl -H Pragma: -o R-4.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ljavorsk/zlib-ng-rebase-fedora/R/R-4.4.1.tar.gz/md5/cfe520ea9fbca4f3c3d8462aaee7af46/R-4.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 35.6M 100 35.6M 0 0 363M 0 --:--:-- --:--:-- --:--:-- 367M INFO: Reading stdout from command: md5sum R-4.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nleu5enr/R/R.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nleu5enr/R --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727260745.348286 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nleu5enr/R/R.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nleu5enr/R --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727260745.348286 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-nleu5enr/R/R.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260745.348286/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260745.348286/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/88d46ecfa8883660beb9e51b7aed441de6b07ee396d637c185c00b8d2d2fc2d0/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/88d46ecfa8883660beb9e51b7aed441de6b07ee396d637c185c00b8d2d2fc2d0/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1727260745.348286/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.6.2-1.fc42.aarch64 dnf5-plugins-5.2.6.2-1.fc42.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 46.5 KiB/s | 13.3 KiB | 00m00s Copr repository 100% | 66.3 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 1.2 MiB/s | 72.2 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.32-2.fc42 fedora 8.3 MiB bzip2 aarch64 1.0.8-19.fc41 fedora 427.6 KiB coreutils aarch64 9.5-9.fc42 fedora 20.8 MiB cpio aarch64 2.15-2.fc41 fedora 1.2 MiB diffutils aarch64 3.10-8.fc41 fedora 2.1 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils aarch64 1:4.10.0-4.fc41 fedora 2.1 MiB gawk aarch64 5.3.0-4.fc41 fedora 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-1.fc42 fedora 0.0 B grep aarch64 3.11-9.fc41 fedora 1.1 MiB gzip aarch64 1.13-2.fc41 fedora 488.9 KiB info aarch64 7.1.1-1.fc42 fedora 613.6 KiB patch aarch64 2.7.6-25.fc41 fedora 390.6 KiB redhat-rpm-config noarch 295-1.fc42 fedora 186.6 KiB rpm-build aarch64 4.19.94-1.fc42 fedora 1.4 MiB sed aarch64 4.9-3.fc41 fedora 1.0 MiB shadow-utils aarch64 2:4.16.0-4.fc42 fedora 7.3 MiB tar aarch64 2:1.35-4.fc41 fedora 3.1 MiB unzip aarch64 6.0-64.fc41 fedora 726.7 KiB util-linux aarch64 2.40.2-8.fc42 fedora 16.9 MiB which aarch64 2.21-42.fc41 fedora 248.2 KiB xz aarch64 1:5.6.2-2.fc41 fedora 1.5 MiB Installing dependencies: add-determinism aarch64 0.3.6-1.fc41 fedora 2.0 MiB alternatives aarch64 1.30-1.fc41 fedora 218.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs aarch64 4.0.2-1.fc41 fedora 547.4 KiB authselect aarch64 1.5.0-7.fc41 fedora 309.5 KiB authselect-libs aarch64 1.5.0-7.fc41 fedora 931.9 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils aarch64 2.43.1-1.fc42 fedora 33.0 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B bzip2-libs aarch64 1.0.8-19.fc41 fedora 200.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.fc42 fedora 2.6 MiB coreutils-common aarch64 9.5-9.fc42 fedora 11.2 MiB cracklib aarch64 2.9.11-6.fc41 fedora 935.0 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 fedora 136.9 KiB curl aarch64 8.10.1-1.fc42 fedora 581.3 KiB cyrus-sasl-lib aarch64 2.1.28-27.fc41 fedora 3.1 MiB debugedit aarch64 5.0-17.fc41 fedora 499.2 KiB dwz aarch64 0.15-7.fc41 fedora 386.8 KiB ed aarch64 1.20.2-2.fc41 fedora 282.8 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils aarch64 0.191-8.fc41 fedora 4.9 MiB elfutils-debuginfod-client aarch64 0.191-8.fc41 fedora 396.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB elfutils-libelf aarch64 0.191-8.fc41 fedora 1.3 MiB elfutils-libs aarch64 0.191-8.fc41 fedora 938.3 KiB fedora-gpg-keys noarch 42-0.2 fedora 126.4 KiB fedora-release noarch 42-0.3 fedora 0.0 B fedora-release-identity-basic noarch 42-0.3 fedora 694.0 B fedora-repos noarch 42-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.2 fedora 2.2 KiB file aarch64 5.45-7.fc41 fedora 267.5 KiB file-libs aarch64 5.45-7.fc41 fedora 10.0 MiB filesystem aarch64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal aarch64 15.1-2.fc42 fedora 13.0 MiB gdbm aarch64 1:1.23-7.fc41 fedora 928.5 KiB gdbm-libs aarch64 1:1.23-7.fc41 fedora 426.0 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc aarch64 2.40.9000-1.fc42 fedora 9.2 MiB glibc-common aarch64 2.40.9000-1.fc42 fedora 2.6 MiB glibc-gconv-extra aarch64 2.40.9000-1.fc42 fedora 49.2 MiB gmp aarch64 1:6.3.0-2.fc41 fedora 722.0 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson aarch64 2.13.1-10.fc41 fedora 220.5 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-4.fc41 fedora 226.4 KiB krb5-libs aarch64 1.21.3-2.fc41 fedora 3.3 MiB libacl aarch64 2.3.2-2.fc41 fedora 196.1 KiB libarchive aarch64 3.7.4-3.fc42 fedora 974.6 KiB libattr aarch64 2.5.2-4.fc41 fedora 196.6 KiB libblkid aarch64 2.40.2-8.fc42 fedora 418.6 KiB libbrotli aarch64 1.1.0-5.fc41 fedora 1.1 MiB libcap aarch64 2.70-4.fc41 fedora 1.4 MiB libcap-ng aarch64 0.8.5-3.fc41 fedora 417.2 KiB libcom_err aarch64 1.47.1-3.fc41 fedora 239.3 KiB libcurl aarch64 8.10.1-1.fc42 fedora 858.4 KiB libeconf aarch64 0.6.2-3.fc41 fedora 206.1 KiB libevent aarch64 2.1.12-14.fc41 fedora 1.5 MiB libfdisk aarch64 2.40.2-8.fc42 fedora 482.9 KiB libffi aarch64 3.4.6-3.fc42 fedora 282.4 KiB libgcc aarch64 14.2.1-3.fc42 fedora 350.2 KiB libgomp aarch64 14.2.1-3.fc42 fedora 567.3 KiB libidn2 aarch64 2.3.7-2.fc41 fedora 457.2 KiB libmount aarch64 2.40.2-8.fc42 fedora 483.9 KiB libnghttp2 aarch64 1.63.0-1.fc42 fedora 262.2 KiB libnsl2 aarch64 2.0.1-2.fc41 fedora 222.0 KiB libpkgconf aarch64 2.3.0-1.fc42 fedora 198.1 KiB libpsl aarch64 0.21.5-4.fc41 fedora 196.6 KiB libpwquality aarch64 1.4.5-11.fc41 fedora 1.1 MiB libselinux aarch64 3.7-6.fc42 fedora 265.1 KiB libsemanage aarch64 3.7-3.fc42 fedora 361.6 KiB libsepol aarch64 3.7-3.fc42 fedora 873.9 KiB libsmartcols aarch64 2.40.2-8.fc42 fedora 288.5 KiB libssh aarch64 0.11.1-1.fc42 fedora 649.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ aarch64 14.2.1-3.fc42 fedora 2.8 MiB libtasn1 aarch64 4.19.0-9.fc41 fedora 283.8 KiB libtirpc aarch64 1.3.5-0.fc41 fedora 274.8 KiB libtool-ltdl aarch64 2.4.7-12.fc41 fedora 222.2 KiB libunistring aarch64 1.1-8.fc41 fedora 1.8 MiB libuuid aarch64 2.40.2-8.fc42 fedora 197.5 KiB libverto aarch64 0.3.2-9.fc41 fedora 197.5 KiB libxcrypt aarch64 4.4.36-7.fc41 fedora 399.0 KiB libxml2 aarch64 2.12.8-2.fc41 fedora 2.1 MiB libzstd aarch64 1.5.6-2.fc41 fedora 796.0 KiB lua-libs aarch64 5.4.6-6.fc41 fedora 393.1 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs aarch64 1.10.0-1.fc41 fedora 261.6 KiB mpfr aarch64 4.2.1-5.fc41 fedora 818.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 fedora 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap aarch64 2.6.8-5.fc41 fedora 952.3 KiB openssl-libs aarch64 1:3.2.2-8.fc42 fedora 7.2 MiB p11-kit aarch64 0.25.5-3.fc41 fedora 2.6 MiB p11-kit-trust aarch64 0.25.5-3.fc41 fedora 655.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam aarch64 1.6.1-6.fc42 fedora 11.0 MiB pam-libs aarch64 1.6.1-6.fc42 fedora 607.3 KiB pcre2 aarch64 10.44-1.fc41.1 fedora 905.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf aarch64 2.3.0-1.fc42 fedora 240.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 fedora 990.0 B popt aarch64 1.19-7.fc41 fedora 272.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B readline aarch64 8.2-11.fc42 fedora 753.3 KiB rpm aarch64 4.19.94-1.fc42 fedora 3.9 MiB rpm-build-libs aarch64 4.19.94-1.fc42 fedora 262.7 KiB rpm-libs aarch64 4.19.94-1.fc42 fedora 798.0 KiB rpm-sequoia aarch64 1.7.0-2.fc41 fedora 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs aarch64 3.46.0-4.fc41 fedora 1.6 MiB systemd-libs aarch64 256.5-1.fc42 fedora 2.5 MiB util-linux-core aarch64 2.40.2-8.fc42 fedora 6.2 MiB xxhash-libs aarch64 0.8.2-3.fc41 fedora 212.3 KiB xz-libs aarch64 1:5.6.2-2.fc41 fedora 266.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip aarch64 3.0-41.fc41 fedora 1.1 MiB zlib-ng-compat aarch64 2.2.2-1.fc42 copr_base 197.6 KiB zstd aarch64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation, 303 MiB extra will be used (install 303 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] redhat-rpm-config-0:295-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] rpm-build-0:4.19.94-1.fc42.aarch6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] unzip-0:6.0-64.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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Already downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/155] Verify package files 100% | 711.0 B/s | 153.0 B | 00m00s [ 2/155] Prepare transaction 100% | 2.4 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-3. 100% | 171.8 MiB/s | 351.9 KiB | 00m00s [ 4/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 6/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 33.6 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 44.3 MiB/s | 726.1 KiB | 00m00s [ 13/155] Installing filesystem-0:3.18- 100% | 2.2 MiB/s | 212.6 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing ncurses-base-0:6.5 100% | 49.1 MiB/s | 351.7 KiB | 00m00s [ 17/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 18/155] Installing ncurses-libs-0:6.5 100% | 281.1 MiB/s | 2.2 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 19/155] Installing glibc-0:2.40.9000- 100% | 257.3 MiB/s | 9.3 MiB | 00m00s [ 20/155] Installing bash-0:5.2.32-2.fc 100% | 296.9 MiB/s | 8.3 MiB | 00m00s [ 21/155] Installing glibc-common-0:2.4 100% | 285.6 MiB/s | 2.6 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 22/155] Installing glibc-gconv-extra- 100% | 547.3 MiB/s | 49.3 MiB | 00m00s [ 23/155] Installing zlib-ng-compat-0:2 100% | 193.8 MiB/s | 198.5 KiB | 00m00s [ 24/155] Installing bzip2-libs-0:1.0.8 100% | 197.1 MiB/s | 201.9 KiB | 00m00s [ 25/155] 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| 00m00s [126/155] Installing gdb-minimal-0:15.1 100% | 341.6 MiB/s | 13.0 MiB | 00m00s [127/155] Installing debugedit-0:5.0-17 100% | 245.1 MiB/s | 502.0 KiB | 00m00s [128/155] Installing curl-0:8.10.1-1.fc 100% | 51.8 MiB/s | 583.8 KiB | 00m00s [129/155] Installing rpm-0:4.19.94-1.fc 100% | 146.0 MiB/s | 3.4 MiB | 00m00s [130/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [131/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [132/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 349.3 MiB/s | 1.4 MiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 368.6 MiB/s | 17.0 MiB | 00m00s [153/155] Installing authselect-0:1.5.0 100% | 102.2 MiB/s | 313.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [155/155] Installing info-0:7.1.1-1.fc4 100% | 279.2 KiB/s | 614.1 KiB | 00m02s Warning: skipped PGP checks for 1 package from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.aarch64 alternatives-1.30-1.fc41.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.aarch64 authselect-1.5.0-7.fc41.aarch64 authselect-libs-1.5.0-7.fc41.aarch64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.aarch64 binutils-2.43.1-1.fc42.aarch64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.aarch64 bzip2-libs-1.0.8-19.fc41.aarch64 ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch coreutils-9.5-9.fc42.aarch64 coreutils-common-9.5-9.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc41.aarch64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.10.1-1.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.0-17.fc41.aarch64 diffutils-3.10-8.fc41.aarch64 dwz-0.15-7.fc41.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.aarch64 elfutils-debuginfod-client-0.191-8.fc41.aarch64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.aarch64 elfutils-libs-0.191-8.fc41.aarch64 fedora-gpg-keys-42-0.2.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.2.noarch fedora-repos-rawhide-42-0.2.noarch file-5.45-7.fc41.aarch64 file-libs-5.45-7.fc41.aarch64 filesystem-3.18-29.fc42.aarch64 findutils-4.10.0-4.fc41.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.1-2.fc42.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-1.fc42.aarch64 glibc-common-2.40.9000-1.fc42.aarch64 glibc-gconv-extra-2.40.9000-1.fc42.aarch64 glibc-minimal-langpack-2.40.9000-1.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.aarch64 gzip-1.13-2.fc41.aarch64 info-7.1.1-1.fc42.aarch64 jansson-2.13.1-10.fc41.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.aarch64 krb5-libs-1.21.3-2.fc41.aarch64 libacl-2.3.2-2.fc41.aarch64 libarchive-3.7.4-3.fc42.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc41.aarch64 libcap-2.70-4.fc41.aarch64 libcap-ng-0.8.5-3.fc41.aarch64 libcom_err-1.47.1-3.fc41.aarch64 libcurl-8.10.1-1.fc42.aarch64 libeconf-0.6.2-3.fc41.aarch64 libevent-2.1.12-14.fc41.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-14.2.1-3.fc42.aarch64 libgomp-14.2.1-3.fc42.aarch64 libidn2-2.3.7-2.fc41.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.63.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc41.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc41.aarch64 libpwquality-1.4.5-11.fc41.aarch64 libselinux-3.7-6.fc42.aarch64 libsemanage-3.7-3.fc42.aarch64 libsepol-3.7-3.fc42.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-3.fc42.aarch64 libtasn1-4.19.0-9.fc41.aarch64 libtirpc-1.3.5-0.fc41.aarch64 libtool-ltdl-2.4.7-12.fc41.aarch64 libunistring-1.1-8.fc41.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.36-7.fc41.aarch64 libxml2-2.12.8-2.fc41.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.6-6.fc41.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.aarch64 mpfr-4.2.1-5.fc41.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.aarch64 openssl-libs-3.2.2-8.fc42.aarch64 p11-kit-0.25.5-3.fc41.aarch64 p11-kit-trust-0.25.5-3.fc41.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.aarch64 pam-libs-1.6.1-6.fc42.aarch64 patch-2.7.6-25.fc41.aarch64 pcre2-10.44-1.fc41.1.aarch64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc41.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.0-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-295-1.fc42.noarch rpm-4.19.94-1.fc42.aarch64 rpm-build-4.19.94-1.fc42.aarch64 rpm-build-libs-4.19.94-1.fc42.aarch64 rpm-libs-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-4.fc42.aarch64 sqlite-libs-3.46.0-4.fc41.aarch64 systemd-libs-256.5-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-64.fc41.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.2-3.fc41.aarch64 xz-5.6.2-2.fc41.aarch64 xz-libs-5.6.2-2.fc41.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.aarch64 zlib-ng-compat-2.2.2-1.fc42.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721606400 Wrote: /builddir/build/SRPMS/R-4.4.1-5.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-aarch64-1727260745.348286/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1727260745.348286/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-nleu5enr/R/R.spec) Config(child) 0 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-4.4.1-5.fc42.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260745.348286/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260745.348286/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1727260745.348286/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.6.2-1.fc42.aarch64 dnf5-plugins-5.2.6.2-1.fc42.aarch64 Finish: chroot init Start: build phase for R-4.4.1-5.fc42.src.rpm Start: build setup for R-4.4.1-5.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721606400 Wrote: /builddir/build/SRPMS/R-4.4.1-5.fc42.src.rpm Updating and loading repositories: fedora 100% | 122.4 KiB/s | 13.3 KiB | 00m00s Copr repository 100% | 95.3 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: autoconf noarch 2.72-3.fc41 fedora 2.8 MiB automake noarch 1.16.5-17.fc41 fedora 1.7 MiB bzip2-devel aarch64 1.0.8-19.fc41 fedora 309.8 KiB cairo-devel aarch64 1.18.0-4.fc41 fedora 2.3 MiB flexiblas-devel aarch64 3.4.4-3.fc41 fedora 5.1 MiB gcc-c++ aarch64 14.2.1-3.fc42 fedora 35.0 MiB gcc-gfortran aarch64 14.2.1-3.fc42 fedora 33.9 MiB java-21-openjdk-devel aarch64 1:21.0.4.0.7-2.fc41 fedora 15.6 MiB less aarch64 661-2.fc41 fedora 869.2 KiB libICE-devel aarch64 1.1.1-4.fc41 fedora 261.8 KiB libSM-devel aarch64 1.2.4-4.fc41 fedora 18.8 KiB libX11-devel aarch64 1.8.10-2.fc42 fedora 1.0 MiB libXmu-devel aarch64 1.2.1-2.fc41 fedora 66.2 KiB libXt-devel aarch64 1.3.0-4.fc41 fedora 1.6 MiB libcurl-devel aarch64 8.10.1-1.fc42 fedora 1.3 MiB libdeflate-devel aarch64 1.21-2.fc41 fedora 25.7 KiB libicu-devel aarch64 74.2-2.fc41 fedora 5.7 MiB libjpeg-turbo-devel aarch64 3.0.4-1.fc42 fedora 353.1 KiB libpng-devel aarch64 2:1.6.44-1.fc42 fedora 1.2 MiB libtiff-devel aarch64 4.6.0-6.fc42 fedora 708.9 KiB libtirpc-devel aarch64 1.3.5-0.fc41 fedora 251.6 KiB libtool aarch64 2.4.7-12.fc41 fedora 2.6 MiB ncurses-devel aarch64 6.5-2.20240629.fc41 fedora 870.1 KiB pango-devel aarch64 1.54.0-2.fc41 fedora 1.5 MiB pcre2-devel aarch64 10.44-1.fc41.1 fedora 2.0 MiB readline-devel aarch64 8.2-11.fc42 fedora 553.0 KiB tcl-devel aarch64 1:8.6.14-2.fc41 fedora 792.2 KiB texinfo-tex aarch64 7.1.1-1.fc42 fedora 511.1 KiB texlive-collection-latexrecommended noarch 11:svn65512-73.fc41 fedora 0.0 B texlive-inconsolata noarch 11:svn54512-73.fc41 fedora 737.4 KiB texlive-upquote noarch 11:svn26059.v1.3-73.fc41 fedora 15.1 KiB tk-devel aarch64 1:8.6.14-2.fc41 fedora 985.6 KiB tre-devel aarch64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB valgrind-devel aarch64 1:3.23.0-5.fc41 fedora 501.8 KiB xz-devel aarch64 1:5.6.2-2.fc41 fedora 255.6 KiB zlib-ng-compat-devel aarch64 2.2.2-1.fc42 copr_base 106.8 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB adobe-mappings-cmap noarch 20230622-4.fc41 fedora 14.4 MiB adobe-mappings-cmap-deprecated noarch 20230622-4.fc41 fedora 582.1 KiB adobe-mappings-pdf noarch 20190401-8.fc41 fedora 4.4 MiB alsa-lib aarch64 1.2.12-2.fc41 fedora 1.8 MiB annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc aarch64 12.70-1.fc42 fedora 1.1 MiB avahi-libs aarch64 0.8-30.fc42 fedora 614.5 KiB biber noarch 2.19-6.fc41 fedora 1.3 MiB brotli aarch64 1.1.0-5.fc41 fedora 195.8 KiB brotli-devel aarch64 1.1.0-5.fc41 fedora 65.6 KiB cairo aarch64 1.18.0-4.fc41 fedora 1.9 MiB cmake-filesystem aarch64 3.28.3-7.fc41 fedora 0.0 B copy-jdk-configs noarch 4.1-6.fc41 fedora 20.3 KiB cpp aarch64 14.2.1-3.fc42 fedora 31.8 MiB cups-libs aarch64 1:2.4.10-6.fc42 fedora 859.1 KiB dbus-libs aarch64 1:1.14.10-4.fc41 fedora 489.1 KiB default-fonts-core-sans noarch 4.1-3.fc42 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat aarch64 2.6.3-1.fc42 fedora 539.6 KiB flexiblas aarch64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib aarch64 3.4.4-3.fc41 fedora 9.8 MiB flexiblas-netlib64 aarch64 3.4.4-3.fc41 fedora 9.7 MiB flexiblas-openblas-openmp aarch64 3.4.4-3.fc41 fedora 195.4 KiB flexiblas-openblas-openmp64 aarch64 3.4.4-3.fc41 fedora 195.5 KiB fontconfig aarch64 2.15.0-8.fc41 fedora 2.4 MiB fontconfig-devel aarch64 2.15.0-8.fc41 fedora 117.2 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype aarch64 2.13.2-6.fc41 fedora 943.1 KiB freetype-devel aarch64 2.13.2-6.fc41 fedora 7.8 MiB fribidi aarch64 1.0.15-2.fc41 fedora 676.4 KiB fribidi-devel aarch64 1.0.15-2.fc41 fedora 78.0 KiB gcc aarch64 14.2.1-3.fc42 fedora 93.8 MiB gcc-plugin-annobin aarch64 14.2.1-3.fc42 fedora 197.1 KiB gettext aarch64 0.22.5-6.fc41 fedora 8.2 MiB gettext-envsubst aarch64 0.22.5-6.fc41 fedora 234.9 KiB gettext-libs aarch64 0.22.5-6.fc41 fedora 2.0 MiB gettext-runtime aarch64 0.22.5-6.fc41 fedora 793.2 KiB ghostscript aarch64 10.03.1-3.fc41 fedora 214.9 KiB ghostscript-tools-fonts noarch 10.03.1-3.fc41 fedora 2.5 KiB ghostscript-tools-printing noarch 10.03.1-3.fc41 fedora 3.5 KiB glib2 aarch64 2.82.1-1.fc42 fedora 16.6 MiB glib2-devel aarch64 2.82.1-1.fc42 fedora 16.7 MiB glibc-devel aarch64 2.40.9000-1.fc42 fedora 2.2 MiB gnutls aarch64 3.8.7-4.fc42 fedora 3.4 MiB google-droid-sans-fonts noarch 20200215-21.fc41 fedora 6.3 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 aarch64 1.3.14-16.fc41 fedora 495.9 KiB graphite2-devel aarch64 1.3.14-16.fc41 fedora 49.1 KiB groff-base aarch64 1.23.0-7.fc41 fedora 5.2 MiB harfbuzz aarch64 9.0.0-3.fc42 fedora 2.8 MiB harfbuzz-cairo aarch64 9.0.0-3.fc42 fedora 196.3 KiB harfbuzz-devel aarch64 9.0.0-3.fc42 fedora 5.7 MiB harfbuzz-icu aarch64 9.0.0-3.fc42 fedora 195.5 KiB java-21-openjdk aarch64 1:21.0.4.0.7-2.fc41 fedora 1.5 MiB java-21-openjdk-headless aarch64 1:21.0.4.0.7-2.fc41 fedora 211.0 MiB javapackages-filesystem noarch 6.2.0-27.fc42 fedora 1.9 KiB jbig2dec-libs aarch64 0.20-5.fc41 fedora 301.1 KiB jbigkit-libs aarch64 2.1-30.fc41 fedora 437.7 KiB kernel-headers aarch64 6.11.0-63.fc42 fedora 6.3 MiB lcms2 aarch64 2.16-4.fc41 fedora 484.9 KiB libICE aarch64 1.1.1-4.fc41 fedora 273.1 KiB libSM aarch64 1.2.4-4.fc41 fedora 253.4 KiB libX11 aarch64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libX11-xcb aarch64 1.8.10-2.fc42 fedora 195.1 KiB libXau aarch64 1.0.11-7.fc41 fedora 242.9 KiB libXau-devel aarch64 1.0.11-7.fc41 fedora 6.4 KiB libXaw aarch64 1.0.16-2.fc41 fedora 614.2 KiB libXcomposite aarch64 0.4.6-4.fc41 fedora 224.6 KiB libXext aarch64 1.3.6-2.fc41 fedora 210.0 KiB libXext-devel aarch64 1.3.6-2.fc41 fedora 98.9 KiB libXft aarch64 2.3.8-7.fc41 fedora 256.5 KiB libXft-devel aarch64 2.3.8-7.fc41 fedora 31.7 KiB libXi aarch64 1.8.2-1.fc42 fedora 200.7 KiB libXmu aarch64 1.2.1-2.fc41 fedora 455.6 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fedora 6.5 KiB perl-encoding aarch64 4:3.00-511.fc41 fedora 149.5 KiB perl-if noarch 0.61.000-511.fc41 fedora 5.8 KiB perl-interpreter aarch64 4:5.40.0-511.fc41 fedora 302.3 KiB perl-libintl-perl aarch64 1.33-9.fc41 fedora 4.2 MiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs aarch64 4:5.40.0-511.fc41 fedora 10.9 MiB perl-libwww-perl noarch 6.77-2.fc41 fedora 521.0 KiB perl-locale noarch 1.12-511.fc41 fedora 6.5 KiB perl-meta-notation noarch 5.40.0-511.fc41 fedora 2.0 KiB perl-mro aarch64 1.29-511.fc41 fedora 209.7 KiB perl-namespace-autoclean noarch 0.29-19.fc41 fedora 41.1 KiB perl-namespace-clean noarch 0.27-27.fc41 fedora 38.7 KiB perl-open noarch 1.13-511.fc41 fedora 11.3 KiB perl-overload noarch 1.37-511.fc41 fedora 71.5 KiB perl-overloading noarch 0.02-511.fc41 fedora 4.8 KiB perl-parent noarch 1:0.242-1.fc42 fedora 10.0 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-sigtrap noarch 1.10-511.fc41 fedora 11.0 KiB perl-subs noarch 1.04-511.fc41 fedora 2.1 KiB perl-threads aarch64 1:2.40-511.fc41 fedora 263.2 KiB perl-threads-shared aarch64 1.69-511.fc41 fedora 231.8 KiB perl-vars noarch 1.05-511.fc41 fedora 3.9 KiB perl-version aarch64 9:0.99.33-1.fc42 fedora 288.9 KiB perltidy noarch 20240903-1.fc42 fedora 3.9 MiB pixman aarch64 0.43.4-2.fc41 fedora 718.4 KiB pixman-devel aarch64 0.43.4-2.fc41 fedora 49.4 KiB publicsuffix-list noarch 20240107-4.fc41 fedora 318.0 KiB python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB python3 aarch64 3.13.0~rc2-3.fc42 fedora 211.8 KiB python3-libs aarch64 3.13.0~rc2-3.fc42 fedora 49.8 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB sombok aarch64 2.4.0-22.fc41 fedora 271.2 KiB sysprof-capture-devel aarch64 47.0-1.fc42 fedora 277.8 KiB tcl aarch64 1:8.6.14-2.fc41 fedora 4.5 MiB teckit aarch64 2.5.12-3.fc41 fedora 2.7 MiB texinfo aarch64 7.1.1-1.fc42 fedora 5.9 MiB texlive-ae noarch 11:svn15878.1.4-73.fc41 fedora 451.9 KiB texlive-algorithms noarch 11:svn42428-73.fc41 fedora 38.2 KiB texlive-alphalph noarch 11:svn53087-73.fc41 fedora 375.9 KiB texlive-amscls noarch 11:svn55378-73.fc41 fedora 1.4 MiB texlive-amsfonts noarch 11:svn61937-73.fc41 fedora 5.9 MiB texlive-amsmath noarch 11:svn63514-73.fc41 fedora 266.6 KiB texlive-anysize noarch 11:svn15878.0-73.fc41 fedora 3.4 KiB texlive-atbegshi noarch 11:svn53051-73.fc41 fedora 443.4 KiB texlive-attachfile noarch 11:svn42099-73.fc41 fedora 32.0 KiB texlive-attachfile2 noarch 11:svn57959-85.fc41 fedora 492.2 KiB texlive-atveryend noarch 11:svn53108-73.fc41 fedora 409.9 KiB texlive-auto-pst-pdf noarch 11:svn56596-73.fc41 fedora 14.8 KiB texlive-auxhook noarch 11:svn53173-73.fc41 fedora 301.9 KiB texlive-avantgar noarch 11:svn61983-73.fc41 fedora 1.2 MiB texlive-babel noarch 11:svn65823-73.fc41 fedora 2.1 MiB texlive-babel-english noarch 11:svn44495-73.fc41 fedora 44.4 KiB texlive-babelbib noarch 11:svn57349-73.fc41 fedora 779.1 KiB texlive-base aarch64 11:20230311-85.fc41 fedora 19.0 MiB texlive-beamer noarch 11:svn65984-73.fc41 fedora 702.9 KiB texlive-bera noarch 11:svn20031.0-73.fc41 fedora 772.9 KiB texlive-beton noarch 11:svn15878.0-73.fc41 fedora 11.8 KiB texlive-biblatex noarch 11:svn66403-73.fc41 fedora 2.2 MiB texlive-bibtex aarch64 11:svn66186-85.fc41 fedora 930.8 KiB texlive-bidi noarch 11:svn65572-73.fc41 fedora 1.2 MiB texlive-bigintcalc noarch 11:svn53172-73.fc41 fedora 515.6 KiB texlive-bitset noarch 11:svn53837-73.fc41 fedora 662.3 KiB texlive-bookman noarch 11:svn61719-73.fc41 fedora 1.2 MiB texlive-bookmark noarch 11:svn56885-73.fc41 fedora 569.3 KiB texlive-booktabs noarch 11:svn53402-73.fc41 fedora 18.3 KiB texlive-breakurl noarch 11:svn29901.1.40-73.fc41 fedora 17.1 KiB texlive-breqn noarch 11:svn60881-73.fc41 fedora 167.4 KiB texlive-caption noarch 11:svn66580-73.fc41 fedora 906.9 KiB texlive-carlisle noarch 11:svn59577-73.fc41 fedora 31.2 KiB texlive-catchfile noarch 11:svn53084-73.fc41 fedora 318.8 KiB texlive-changepage noarch 11:svn15878.1.0c-73.fc41 fedora 27.3 KiB texlive-charter noarch 11:svn15878.0-73.fc41 fedora 404.0 KiB texlive-cite noarch 11:svn36428.5.5-73.fc41 fedora 62.3 KiB texlive-cm noarch 11:svn57963-73.fc41 fedora 994.9 KiB texlive-cm-super noarch 11:svn15878.0-73.fc41 fedora 65.0 MiB texlive-cmap noarch 11:svn57640-73.fc41 fedora 36.2 KiB texlive-collection-basic noarch 11:svn59159-73.fc41 fedora 0.0 B texlive-collection-latex noarch 11:svn63515-73.fc41 fedora 0.0 B texlive-colorprofiles noarch 11:svn49086-73.fc41 fedora 272.2 KiB texlive-colortbl noarch 11:svn64015-73.fc41 fedora 21.0 KiB texlive-courier noarch 11:svn61719-73.fc41 fedora 915.1 KiB texlive-crop noarch 11:svn55424-73.fc41 fedora 26.7 KiB texlive-csquotes noarch 11:svn64389-73.fc41 fedora 112.0 KiB texlive-ctable noarch 11:svn38672-73.fc41 fedora 20.6 KiB texlive-ctablestack noarch 11:svn38514-73.fc41 fedora 20.1 KiB texlive-currfile noarch 11:svn64673-73.fc41 fedora 34.0 KiB texlive-dehyph noarch 11:svn48599-73.fc41 fedora 239.9 KiB texlive-dvipdfmx aarch64 11:svn66203-85.fc41 fedora 3.8 MiB texlive-dvips aarch64 11:svn66203-85.fc41 fedora 1.8 MiB texlive-ec noarch 11:svn25033.1.0-73.fc41 fedora 2.5 MiB texlive-enctex noarch 11:svn34957.0-73.fc41 fedora 179.8 KiB texlive-enumitem noarch 11:svn51423-73.fc41 fedora 59.4 KiB texlive-epsf noarch 11:svn21461.2.7.4-73.fc41 fedora 53.6 KiB texlive-epstopdf noarch 11:svn66461-85.fc41 fedora 39.3 KiB texlive-epstopdf-pkg noarch 11:svn53546-73.fc41 fedora 386.5 KiB texlive-eso-pic noarch 11:svn56658-73.fc41 fedora 27.7 KiB texlive-etex noarch 11:svn66203-73.fc41 fedora 41.0 KiB texlive-etex-pkg noarch 11:svn41784-73.fc41 fedora 18.6 KiB texlive-etexcmds noarch 11:svn53171-73.fc41 fedora 321.0 KiB texlive-etoolbox noarch 11:svn56554-73.fc41 fedora 66.7 KiB texlive-euenc noarch 11:svn19795.0.1h-73.fc41 fedora 39.3 KiB texlive-euler noarch 11:svn42428-73.fc41 fedora 20.7 KiB texlive-everysel noarch 11:svn57489-73.fc41 fedora 457.9 KiB texlive-everyshi noarch 11:svn57001-73.fc41 fedora 157.4 KiB texlive-extsizes noarch 11:svn17263.1.4a-73.fc41 fedora 126.6 KiB texlive-fancybox noarch 11:svn18304.1.4-73.fc41 fedora 40.7 KiB texlive-fancyhdr noarch 11:svn64977-73.fc41 fedora 31.6 KiB texlive-fancyref noarch 11:svn15878.0.9c-73.fc41 fedora 27.8 KiB texlive-fancyvrb noarch 11:svn65585-73.fc41 fedora 66.2 KiB texlive-filecontents noarch 11:svn52142-73.fc41 fedora 12.2 KiB texlive-filehook noarch 11:svn64822-73.fc41 fedora 55.2 KiB texlive-finstrut noarch 11:svn21719.0.5-73.fc41 fedora 25.6 KiB texlive-firstaid noarch 11:svn64892-73.fc41 fedora 296.9 KiB texlive-fix2col noarch 11:svn38770-73.fc41 fedora 16.7 KiB texlive-float noarch 11:svn15878.1.3d-73.fc41 fedora 15.5 KiB texlive-fontspec noarch 11:svn63386-73.fc41 fedora 329.1 KiB texlive-footmisc noarch 11:svn62524-73.fc41 fedora 64.7 KiB texlive-footnotehyper noarch 11:svn60374-73.fc41 fedora 30.5 KiB texlive-fp noarch 11:svn49719-73.fc41 fedora 124.9 KiB texlive-fpl noarch 11:svn54512-73.fc41 fedora 647.6 KiB texlive-geometry noarch 11:svn61719-73.fc41 fedora 49.5 KiB texlive-gettitlestring noarch 11:svn53170-73.fc41 fedora 338.8 KiB texlive-glyphlist noarch 11:svn54074-85.fc41 fedora 90.3 KiB texlive-graphics noarch 11:svn66204-73.fc41 fedora 124.5 KiB texlive-graphics-cfg noarch 11:svn41448-73.fc41 fedora 3.0 KiB texlive-graphics-def noarch 11:svn64487-73.fc41 fedora 98.2 KiB texlive-grfext noarch 11:svn53024-73.fc41 fedora 327.8 KiB texlive-grffile noarch 11:svn52756-73.fc41 fedora 379.3 KiB texlive-gsftopk aarch64 11:svn52851-85.fc41 fedora 207.1 KiB texlive-helvetic noarch 11:svn61719-73.fc41 fedora 1.8 MiB texlive-hobsub noarch 11:svn52810-73.fc41 fedora 80.2 KiB texlive-hologo noarch 11:svn61719-73.fc41 fedora 664.7 KiB texlive-hopatch noarch 11:svn65491-73.fc41 fedora 345.8 KiB texlive-hycolor noarch 11:svn53584-73.fc41 fedora 411.7 KiB texlive-hypdoc noarch 11:svn65678-73.fc41 fedora 358.3 KiB texlive-hyperref noarch 11:svn65758-73.fc41 fedora 763.7 KiB texlive-hyph-utf8 noarch 11:svn61719-73.fc41 fedora 73.9 KiB texlive-hyphen-base noarch 11:svn66413-73.fc41 fedora 63.7 KiB texlive-hyphenex noarch 11:svn57387-73.fc41 fedora 25.7 KiB texlive-ifmtarg noarch 11:svn47544-73.fc41 fedora 9.2 KiB texlive-ifplatform noarch 11:svn45533-73.fc41 fedora 12.7 KiB texlive-iftex noarch 11:svn61910-73.fc41 fedora 28.7 KiB texlive-index noarch 11:svn24099.4.1beta-73.fc41 fedora 60.6 KiB texlive-infwarerr noarch 11:svn53023-73.fc41 fedora 306.3 KiB texlive-intcalc noarch 11:svn53168-73.fc41 fedora 471.6 KiB texlive-jknapltx noarch 11:svn19440.0-73.fc41 fedora 43.9 KiB texlive-kastrup noarch 11:svn15878.0-73.fc41 fedora 3.4 KiB texlive-knuth-lib noarch 11:svn57963-73.fc41 fedora 99.9 KiB texlive-knuth-local noarch 11:svn57963-73.fc41 fedora 106.3 KiB texlive-koma-script noarch 11:svn64685-73.fc41 fedora 9.9 MiB texlive-kpathsea aarch64 11:svn66209-85.fc41 fedora 2.8 MiB texlive-kvdefinekeys noarch 11:svn53193-73.fc41 fedora 314.2 KiB texlive-kvoptions noarch 11:svn63622-73.fc41 fedora 550.0 KiB texlive-kvsetkeys noarch 11:svn64632-73.fc41 fedora 427.4 KiB texlive-l3backend noarch 11:svn65573-73.fc41 fedora 1.1 MiB texlive-l3experimental noarch 11:svn65621-73.fc41 fedora 190.3 KiB texlive-l3kernel noarch 11:svn66094-73.fc41 fedora 1.4 MiB texlive-l3packages noarch 11:svn65722-73.fc41 fedora 262.4 KiB texlive-latex noarch 11:svn65161-85.fc41 fedora 40.2 MiB texlive-latex-fonts noarch 11:svn28888.0-73.fc41 fedora 114.2 KiB texlive-latex-lab noarch 11:svn64892-73.fc41 fedora 2.3 MiB texlive-latexbug noarch 11:svn63596-73.fc41 fedora 282.4 KiB texlive-latexconfig noarch 11:svn53525-73.fc41 fedora 8.3 KiB texlive-letltxmacro noarch 11:svn53022-73.fc41 fedora 311.2 KiB texlive-lib aarch64 11:20230311-85.fc41 fedora 1.6 MiB texlive-lineno noarch 11:svn65586-73.fc41 fedora 237.4 KiB texlive-listings noarch 11:svn66222-73.fc41 fedora 580.0 KiB texlive-lm noarch 11:svn65956-73.fc41 fedora 39.4 MiB texlive-lm-math noarch 11:svn36915.1.959-73.fc41 fedora 735.8 KiB texlive-logreq noarch 11:svn53003-73.fc41 fedora 26.3 KiB texlive-ltabptch noarch 11:svn17533.1.74d-73.fc41 fedora 20.8 KiB texlive-ltxcmds noarch 11:svn56421-73.fc41 fedora 424.3 KiB texlive-ltxmisc noarch 11:svn21927.0-73.fc41 fedora 44.0 KiB texlive-lua-alt-getopt noarch 11:svn56414-73.fc41 fedora 3.9 KiB texlive-lua-uni-algos noarch 11:svn62204-73.fc41 fedora 129.1 KiB texlive-luabidi noarch 11:svn54512-73.fc41 fedora 25.3 KiB texlive-luahbtex aarch64 11:svn66186-85.fc41 fedora 6.3 MiB texlive-lualatex-math noarch 11:svn61464-73.fc41 fedora 28.4 KiB texlive-lualibs noarch 11:svn64615-73.fc41 fedora 764.4 KiB texlive-luaotfload noarch 11:svn64616-85.fc41 fedora 8.2 MiB texlive-luatex aarch64 11:svn66967-85.fc41 fedora 9.1 MiB texlive-luatexbase noarch 11:svn52663-73.fc41 fedora 12.8 KiB texlive-lwarp noarch 11:svn66259-85.fc41 fedora 4.8 MiB texlive-makecmds noarch 11:svn15878.0-73.fc41 fedora 11.1 KiB texlive-makeindex aarch64 11:svn62517-85.fc41 fedora 647.0 KiB texlive-marginnote noarch 11:svn48383-73.fc41 fedora 22.5 KiB texlive-marvosym noarch 11:svn29349.2.2a-73.fc41 fedora 185.6 KiB texlive-mathpazo noarch 11:svn52663-73.fc41 fedora 110.5 KiB texlive-mathspec noarch 11:svn42773-73.fc41 fedora 52.4 KiB texlive-mathtools noarch 11:svn63767-73.fc41 fedora 130.7 KiB texlive-mdwtools noarch 11:svn15878.1.05.4-73.fc41 fedora 111.6 KiB texlive-memoir noarch 11:svn65040-73.fc41 fedora 480.4 KiB texlive-metafont aarch64 11:svn66186-85.fc41 fedora 941.8 KiB texlive-metalogo noarch 11:svn18611.0.12-73.fc41 fedora 15.7 KiB texlive-mflogo noarch 11:svn42428-73.fc41 fedora 12.0 KiB texlive-mfnfss noarch 11:svn46036-73.fc41 fedora 22.8 KiB texlive-mfware aarch64 11:svn66186-85.fc41 fedora 1.2 MiB texlive-microtype noarch 11:svn66587-73.fc41 fedora 459.9 KiB texlive-minitoc noarch 11:svn61719-73.fc41 fedora 534.1 KiB texlive-mnsymbol noarch 11:svn18651.1.4-73.fc41 fedora 5.7 MiB texlive-modes noarch 11:svn61719-73.fc41 fedora 389.9 KiB texlive-mparhack noarch 11:svn59066-73.fc41 fedora 20.3 KiB texlive-mptopdf noarch 11:svn65952-85.fc41 fedora 151.3 KiB texlive-ms noarch 11:svn57473-73.fc41 fedora 18.4 KiB texlive-multido noarch 11:svn18302.1.42-73.fc41 fedora 18.5 KiB texlive-natbib noarch 11:svn20668.8.31b-73.fc41 fedora 132.7 KiB texlive-newfloat noarch 11:svn52906-73.fc41 fedora 158.1 KiB texlive-notoccite noarch 11:svn18129.0-73.fc41 fedora 2.3 KiB texlive-ntgclass noarch 11:svn65522-73.fc41 fedora 282.6 KiB texlive-oberdiek noarch 11:svn65521-85.fc41 fedora 12.3 MiB texlive-pagesel noarch 11:svn56105-73.fc41 fedora 354.7 KiB texlive-palatino noarch 11:svn61719-73.fc41 fedora 1.1 MiB texlive-paralist noarch 11:svn43021-73.fc41 fedora 23.4 KiB texlive-parallel noarch 11:svn15878.0-73.fc41 fedora 22.5 KiB texlive-parskip noarch 11:svn58358-73.fc41 fedora 15.7 KiB texlive-pdfcol noarch 11:svn64469-73.fc41 fedora 345.6 KiB texlive-pdfcolfoot noarch 11:svn65512-73.fc41 fedora 335.8 KiB texlive-pdfcolmk noarch 11:svn52912-73.fc41 fedora 19.6 KiB texlive-pdfescape noarch 11:svn53082-73.fc41 fedora 375.9 KiB texlive-pdflscape noarch 11:svn64851-73.fc41 fedora 343.3 KiB texlive-pdfmanagement-testphase noarch 11:svn66532-73.fc41 fedora 11.6 MiB texlive-pdfpages noarch 11:svn65319-73.fc41 fedora 105.7 KiB texlive-pdftex aarch64 11:svn66243-85.fc41 fedora 4.7 MiB texlive-pdftexcmds noarch 11:svn55777-73.fc41 fedora 423.9 KiB texlive-pgf noarch 11:svn65553-73.fc41 fedora 4.8 MiB texlive-picture noarch 11:svn54867-73.fc41 fedora 323.3 KiB texlive-placeins noarch 11:svn19848.2.2-73.fc41 fedora 4.6 KiB texlive-plain noarch 11:svn57963-73.fc41 fedora 109.4 KiB texlive-polyglossia noarch 11:svn65792-73.fc41 fedora 715.0 KiB texlive-psfrag noarch 11:svn15878.3.04-73.fc41 fedora 12.3 KiB texlive-pslatex noarch 11:svn57434-73.fc41 fedora 26.9 KiB texlive-psnfss noarch 11:svn54694-73.fc41 fedora 101.0 KiB texlive-pspicture noarch 11:svn15878.0-73.fc41 fedora 13.6 KiB texlive-pst-3d noarch 11:svn17257.1.10-73.fc41 fedora 19.5 KiB texlive-pst-coil noarch 11:svn62977-73.fc41 fedora 20.4 KiB texlive-pst-eps noarch 11:svn15878.1.0-73.fc41 fedora 15.5 KiB texlive-pst-fill noarch 11:svn60671-73.fc41 fedora 22.8 KiB texlive-pst-grad noarch 11:svn15878.1.06-73.fc41 fedora 21.1 KiB texlive-pst-math noarch 11:svn64732-73.fc41 fedora 22.3 KiB texlive-pst-node noarch 11:svn61838-73.fc41 fedora 114.0 KiB texlive-pst-ovl noarch 11:svn54963-73.fc41 fedora 12.4 KiB texlive-pst-plot noarch 11:svn65346-73.fc41 fedora 129.7 KiB texlive-pst-text noarch 11:svn49542-73.fc41 fedora 19.7 KiB texlive-pst-tools noarch 11:svn60621-73.fc41 fedora 26.8 KiB texlive-pst-tree noarch 11:svn60421-73.fc41 fedora 42.6 KiB texlive-pstricks noarch 11:svn65346-73.fc41 fedora 468.9 KiB texlive-pstricks-add noarch 11:svn65067-73.fc41 fedora 103.4 KiB texlive-ragged2e noarch 11:svn66152-73.fc41 fedora 731.9 KiB texlive-rcs noarch 11:svn15878.0-73.fc41 fedora 47.0 KiB texlive-realscripts noarch 11:svn56594-73.fc41 fedora 23.1 KiB texlive-refcount noarch 11:svn53164-73.fc41 fedora 348.0 KiB texlive-rerunfilecheck noarch 11:svn63869-73.fc41 fedora 361.8 KiB texlive-rsfs noarch 11:svn15878.0-73.fc41 fedora 97.8 KiB texlive-sansmath noarch 11:svn17997.1.1-73.fc41 fedora 8.6 KiB texlive-sansmathaccent noarch 11:svn53628-73.fc41 fedora 51.9 KiB texlive-sauerj noarch 11:svn15878.0-73.fc41 fedora 27.0 KiB texlive-section noarch 11:svn20180.0-73.fc41 fedora 38.2 KiB texlive-seminar noarch 11:svn59801-73.fc41 fedora 195.9 KiB texlive-sepnum noarch 11:svn20186.2.0-73.fc41 fedora 15.0 KiB texlive-setspace noarch 11:svn65206-73.fc41 fedora 22.0 KiB texlive-showexpl noarch 11:svn57414-73.fc41 fedora 21.8 KiB texlive-stringenc noarch 11:svn52982-73.fc41 fedora 1.0 MiB texlive-subfig noarch 11:svn15878.1.3-73.fc41 fedora 36.6 KiB texlive-symbol noarch 11:svn61719-73.fc41 fedora 78.3 KiB texlive-tex aarch64 11:svn66186-85.fc41 fedora 525.4 KiB texlive-tex-ini-files noarch 11:svn40533-73.fc41 fedora 8.1 KiB texlive-texlive-common-doc noarch 11:svn54176-73.fc41 fedora 265.5 KiB texlive-texlive-en noarch 11:svn66572-85.fc41 fedora 5.9 MiB texlive-texlive-msg-translations noarch 11:svn66593-73.fc41 fedora 1.4 MiB texlive-texlive-scripts noarch 11:svn66584-85.fc41 fedora 337.2 KiB texlive-texlive-scripts-extra noarch 11:svn62517-85.fc41 fedora 115.3 KiB texlive-texlive.infra noarch 11:svn66512-85.fc41 fedora 1.0 MiB texlive-textcase noarch 11:svn63868-73.fc41 fedora 11.2 KiB texlive-thumbpdf noarch 11:svn62518-85.fc41 fedora 97.0 KiB texlive-times noarch 11:svn61719-73.fc41 fedora 992.2 KiB texlive-tipa noarch 11:svn29349.1.3-73.fc41 fedora 3.7 MiB texlive-titlesec noarch 11:svn59845-73.fc41 fedora 97.8 KiB texlive-tools noarch 11:svn64892-73.fc41 fedora 403.2 KiB texlive-translator noarch 11:svn59412-73.fc41 fedora 494.7 KiB texlive-transparent noarch 11:svn64852-73.fc41 fedora 302.0 KiB texlive-typehtml noarch 11:svn17134.0-73.fc41 fedora 33.4 KiB texlive-ucharcat noarch 11:svn38907-73.fc41 fedora 10.2 KiB texlive-ucs noarch 11:svn64114-73.fc41 fedora 2.4 MiB texlive-underscore noarch 11:svn18261.0-73.fc41 fedora 19.3 KiB texlive-unicode-data noarch 11:svn64423-73.fc41 fedora 3.1 MiB texlive-unicode-math noarch 11:svn61719-73.fc41 fedora 517.2 KiB texlive-uniquecounter noarch 11:svn53162-73.fc41 fedora 312.0 KiB texlive-url noarch 11:svn32528.3.4-73.fc41 fedora 21.4 KiB texlive-utopia noarch 11:svn15878.0-73.fc41 fedora 540.6 KiB texlive-varwidth noarch 11:svn24104.0.92-73.fc41 fedora 19.5 KiB texlive-xcolor noarch 11:svn63563-73.fc41 fedora 79.3 KiB texlive-xdvi aarch64 11:svn62387-85.fc41 fedora 826.6 KiB texlive-xetex aarch64 11:svn66203-85.fc41 fedora 2.3 MiB texlive-xetexconfig noarch 11:svn45845-73.fc41 fedora 305.0 B texlive-xifthen noarch 11:svn38929-73.fc41 fedora 14.4 KiB texlive-xkeyval noarch 11:svn63616-73.fc41 fedora 69.3 KiB texlive-xltxtra noarch 11:svn56594-73.fc41 fedora 14.4 KiB texlive-xpatch noarch 11:svn54563-73.fc41 fedora 26.8 KiB texlive-xstring noarch 11:svn65551-73.fc41 fedora 56.1 KiB texlive-xunicode noarch 11:svn30466.0.981-73.fc41 fedora 219.6 KiB texlive-zapfding noarch 11:svn61719-73.fc41 fedora 79.5 KiB texlive-zref noarch 11:svn62977-73.fc41 fedora 816.8 KiB tk aarch64 1:8.6.14-2.fc41 fedora 3.9 MiB tre aarch64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 196.0 KiB tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB ttmkfdir aarch64 3.0.9-71.fc41 fedora 222.4 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB tzdata-java noarch 2024a-9.fc41 fedora 101.7 KiB urw-base35-bookman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-c059-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-23.fc41 fedora 84.3 KiB urw-base35-fonts noarch 20200910-23.fc41 fedora 5.3 KiB urw-base35-fonts-common noarch 20200910-23.fc41 fedora 37.4 KiB urw-base35-gothic-fonts noarch 20200910-23.fc41 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-23.fc41 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-23.fc41 fedora 2.4 MiB urw-base35-p052-fonts noarch 20200910-23.fc41 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41 fedora 64.9 KiB urw-base35-z003-fonts noarch 20200910-23.fc41 fedora 390.8 KiB valgrind aarch64 1:3.23.0-5.fc41 fedora 29.1 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xpdf-libs aarch64 1:4.05-5.fc41 fedora 2.2 MiB zziplib aarch64 0.13.74-2.fc41 fedora 922.0 KiB Transaction Summary: Installing: 716 packages Total size of inbound packages is 450 MiB. Need to download 342 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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00m00s [277/716] texlive-footnotehyper-11:svn6 100% | 1.4 MiB/s | 18.5 KiB | 00m00s [278/716] texlive-infwarerr-11:svn53023 100% | 57.3 MiB/s | 293.1 KiB | 00m00s [279/716] texlive-jknapltx-11:svn19440. 100% | 8.2 MiB/s | 25.1 KiB | 00m00s [280/716] texlive-l3experimental-11:svn 100% | 3.7 MiB/s | 41.3 KiB | 00m00s [281/716] texlive-koma-script-11:svn646 100% | 254.2 MiB/s | 6.4 MiB | 00m00s [282/716] texlive-latexbug-11:svn63596- 100% | 9.6 MiB/s | 235.8 KiB | 00m00s [283/716] texlive-lineno-11:svn65586-73 100% | 5.1 MiB/s | 73.8 KiB | 00m00s [284/716] texlive-listings-11:svn66222- 100% | 40.3 MiB/s | 165.1 KiB | 00m00s [285/716] texlive-mathtools-11:svn63767 100% | 11.7 MiB/s | 35.9 KiB | 00m00s [286/716] texlive-mathspec-11:svn42773- 100% | 1.7 MiB/s | 22.1 KiB | 00m00s [287/716] texlive-memoir-11:svn65040-73 100% | 22.5 MiB/s | 92.2 KiB | 00m00s [288/716] texlive-metalogo-11:svn18611. 100% | 7.0 MiB/s | 14.3 KiB | 00m00s [289/716] texlive-mdwtools-11:svn15878. 100% | 1.6 MiB/s | 33.8 KiB | 00m00s [290/716] texlive-ms-11:svn57473-73.fc4 100% | 3.8 MiB/s | 15.4 KiB | 00m00s [291/716] texlive-microtype-11:svn66587 100% | 5.6 MiB/s | 80.2 KiB | 00m00s [292/716] texlive-newfloat-11:svn52906- 100% | 9.6 MiB/s | 117.8 KiB | 00m00s [293/716] texlive-parskip-11:svn58358-7 100% | 1.3 MiB/s | 14.9 KiB | 00m00s [294/716] texlive-ntgclass-11:svn65522- 100% | 1.2 MiB/s | 32.4 KiB | 00m00s [295/716] texlive-pdflscape-11:svn64851 100% | 78.6 MiB/s | 322.1 KiB | 00m00s [296/716] texlive-lwarp-11:svn66259-85. 100% | 42.2 MiB/s | 3.5 MiB | 00m00s [297/716] texlive-pdfcolfoot-11:svn6551 100% | 10.7 MiB/s | 317.4 KiB | 00m00s [298/716] texlive-pdfpages-11:svn65319- 100% | 9.8 MiB/s | 30.1 KiB | 00m00s [299/716] texlive-pdftexcmds-11:svn5577 100% | 94.9 MiB/s | 388.9 KiB | 00m00s [300/716] texlive-polyglossia-11:svn657 100% | 35.5 MiB/s | 217.9 KiB | 00m00s [301/716] texlive-ragged2e-11:svn66152- 100% | 132.7 MiB/s | 679.7 KiB | 00m00s [302/716] texlive-psfrag-11:svn15878.3. 100% | 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perl-autovivificat 100% | 218.5 MiB/s | 223.8 KiB | 00m00s [240/718] Installing perl-WWW-RobotRule 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [241/718] Installing perl-Business-ISBN 100% | 141.3 MiB/s | 289.5 KiB | 00m00s [242/718] Installing perl-Business-ISBN 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [243/718] Installing perl-Tie-Cycle-0:1 100% | 24.0 MiB/s | 24.6 KiB | 00m00s [244/718] Installing perl-Business-ISMN 100% | 36.8 MiB/s | 37.7 KiB | 00m00s [245/718] Installing perl-Class-Singlet 100% | 40.4 MiB/s | 41.4 KiB | 00m00s [246/718] Installing perl-ExtUtils-MM-U 100% | 0.0 B/s | 3.7 KiB | 00m00s [247/718] Installing perl-List-UtilsBy- 100% | 55.8 MiB/s | 57.2 KiB | 00m00s [248/718] Installing perl-List-AllUtils 100% | 132.7 MiB/s | 135.9 KiB | 00m00s [249/718] Installing perl-IPC-SysV-0:2. 100% | 119.6 MiB/s | 244.9 KiB | 00m00s [250/718] Installing perl-MIME-Charset- 100% | 52.4 MiB/s | 107.3 KiB | 00m00s [251/718] Installing perl-Unicode-LineB 100% | 125.8 MiB/s | 386.6 KiB | 00m00s 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171.9 MiB/s | 1.0 MiB | 00m00s [278/718] Installing perl-HTTP-Message- 100% | 107.4 MiB/s | 219.9 KiB | 00m00s [279/718] Installing perl-HTML-Parser-0 100% | 139.3 MiB/s | 427.9 KiB | 00m00s [280/718] Installing perl-HTTP-Negotiat 100% | 28.0 MiB/s | 28.7 KiB | 00m00s [281/718] Installing perl-Net-HTTP-0:6. 100% | 75.4 MiB/s | 77.2 KiB | 00m00s [282/718] Installing perl-HTTP-Cookies- 100% | 73.9 MiB/s | 75.7 KiB | 00m00s [283/718] Installing perl-libwww-perl-0 100% | 129.5 MiB/s | 530.3 KiB | 00m00s [284/718] Installing perl-XML-Parser-0: 100% | 152.3 MiB/s | 779.8 KiB | 00m00s [285/718] Installing perl-XML-XPath-0:1 100% | 68.4 MiB/s | 210.1 KiB | 00m00s [286/718] Installing texlive-epstopdf-1 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [287/718] Installing texlive-epstopdf-p 100% | 189.4 MiB/s | 388.0 KiB | 00m00s [288/718] Installing texlive-cm-11:svn5 100% | 125.9 MiB/s | 1.0 MiB | 00m00s [289/718] Installing texlive-etex-11:sv 100% | 41.7 MiB/s | 42.7 KiB | 00m00s [290/718] Installing texlive-hyph-utf8- 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [291/718] Installing texlive-hyphen-bas 100% | 64.3 MiB/s | 65.9 KiB | 00m00s [292/718] Installing texlive-knuth-lib- 100% | 51.9 MiB/s | 106.3 KiB | 00m00s [293/718] Installing texlive-plain-11:s 100% | 55.6 MiB/s | 113.8 KiB | 00m00s [294/718] Installing texlive-tex-ini-fi 100% | 9.9 MiB/s | 10.1 KiB | 00m00s [295/718] Installing texlive-unicode-da 100% | 383.8 MiB/s | 3.1 MiB | 00m00s [296/718] Installing texlive-graphics-d 100% | 97.5 MiB/s | 99.9 KiB | 00m00s [297/718] Installing texlive-gsftopk-11 100% | 203.7 MiB/s | 208.6 KiB | 00m00s [298/718] Installing texlive-luatex-11: 100% | 366.1 MiB/s | 9.2 MiB | 00m00s [299/718] Installing texlive-texlive.in 100% | 201.4 MiB/s | 1.0 MiB | 00m00s [300/718] Installing texlive-texlive-sc 100% | 85.2 MiB/s | 349.1 KiB | 00m00s [301/718] Installing texlive-kpathsea-1 100% | 346.1 MiB/s | 2.8 MiB | 00m00s [302/718] Installing texlive-iftex-11:s 100% | 29.6 MiB/s | 30.3 KiB | 00m00s 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texlive-tools-11:s 100% | 134.0 MiB/s | 411.7 KiB | 00m00s [329/718] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [330/718] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [331/718] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [332/718] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [333/718] Installing texlive-intcalc-11 100% | 461.7 MiB/s | 472.8 KiB | 00m00s [334/718] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [335/718] Installing texlive-l3backend- 100% | 369.0 MiB/s | 1.1 MiB | 00m00s [336/718] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [337/718] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [338/718] Installing texlive-uniquecoun 100% | 76.5 MiB/s | 313.5 KiB | 00m00s [339/718] Installing texlive-lm-11:svn6 100% | 391.5 MiB/s | 39.5 MiB | 00m00s [340/718] Installing texlive-footmisc-1 100% | 64.1 MiB/s | 65.6 KiB | 00m00s [341/718] Installing texlive-hypdoc-11: 100% | 70.2 MiB/s | 359.5 KiB | 00m00s [342/718] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [343/718] Installing texlive-rerunfilec 100% | 354.8 MiB/s | 363.3 KiB | 00m00s [344/718] Installing texlive-subfig-11: 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [345/718] Installing texlive-carlisle-1 100% | 32.0 MiB/s | 32.8 KiB | 00m00s [346/718] Installing texlive-translator 100% | 101.5 MiB/s | 519.8 KiB | 00m00s [347/718] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB | 00m00s [348/718] Installing texlive-sauerj-11: 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [349/718] Installing texlive-bitset-11: 100% | 324.0 MiB/s | 663.5 KiB | 00m00s [350/718] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [351/718] Installing texlive-ifplatform 100% | 13.1 MiB/s | 13.5 KiB | 00m00s [352/718] Installing texlive-memoir-11: 100% | 236.2 MiB/s | 483.6 KiB | 00m00s [353/718] Installing texlive-babelbib-1 100% | 256.3 MiB/s | 787.2 KiB | 00m00s [354/718] Installing texlive-euenc-11:s 100% | 41.2 MiB/s | 42.2 KiB | 00m00s [355/718] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [356/718] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB | 00m00s [357/718] Installing texlive-fancybox-1 100% | 40.5 MiB/s | 41.5 KiB | 00m00s [358/718] Installing texlive-float-11:s 100% | 0.0 B/s | 16.2 KiB | 00m00s [359/718] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [360/718] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [361/718] Installing texlive-pdflscape- 100% | 336.7 MiB/s | 344.8 KiB | 00m00s [362/718] Installing texlive-ucharcat-1 100% | 0.0 B/s | 10.9 KiB | 00m00s [363/718] Installing texlive-underscore 100% | 19.6 MiB/s | 20.1 KiB | 00m00s [364/718] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [365/718] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [366/718] Installing texlive-firstaid-1 100% | 291.8 MiB/s | 298.8 KiB | 00m00s [367/718] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [368/718] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [369/718] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [370/718] Installing texlive-latexconfi 100% | 0.0 B/s | 9.8 KiB | 00m00s [371/718] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [372/718] Installing texlive-stringenc- 100% | 351.4 MiB/s | 1.1 MiB | 00m00s [373/718] Installing texlive-marvosym-1 100% | 91.9 MiB/s | 188.3 KiB | 00m00s [374/718] Installing texlive-glyphlist- 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [375/718] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [376/718] Installing texlive-modes-11:s 100% | 191.4 MiB/s | 391.9 KiB | 00m00s [377/718] Installing texlive-zapfding-1 100% | 40.4 MiB/s | 82.7 KiB | 00m00s [378/718] Installing texlive-zref-11:sv 100% | 267.6 MiB/s | 822.0 KiB | 00m00s [379/718] Installing texlive-palatino-1 100% | 112.1 MiB/s | 1.1 MiB | 00m00s [380/718] Installing texlive-paralist-1 100% | 23.6 MiB/s | 24.1 KiB | 00m00s [381/718] Installing texlive-placeins-1 100% | 0.0 B/s | 5.4 KiB | 00m00s [382/718] Installing texlive-auto-pst-p 100% | 0.0 B/s | 15.6 KiB | 00m00s [383/718] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [384/718] Installing texlive-fancyref-1 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [385/718] Installing texlive-mathtools- 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [386/718] Installing texlive-ltabptch-1 100% | 0.0 B/s | 21.6 KiB | 00m00s [387/718] Installing texlive-crop-11:sv 100% | 26.8 MiB/s | 27.4 KiB | 00m00s [388/718] Installing texlive-microtype- 100% | 227.3 MiB/s | 465.6 KiB | 00m00s [389/718] Installing texlive-pdfmanagem 100% | 608.5 MiB/s | 11.6 MiB | 00m00s [390/718] Installing texlive-psfrag-11: 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [391/718] Installing texlive-logreq-11: 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [392/718] Installing texlive-dvips-11:s 100% | 228.0 MiB/s | 1.8 MiB | 00m00s [393/718] Installing texlive-hopatch-11 100% | 339.1 MiB/s | 347.2 KiB | 00m00s [394/718] Installing texlive-anysize-11 100% | 0.0 B/s | 4.1 KiB | 00m00s [395/718] Installing texlive-cite-11:sv 100% | 61.7 MiB/s | 63.2 KiB | 00m00s [396/718] Installing texlive-cmap-11:sv 100% | 37.9 MiB/s | 38.8 KiB | 00m00s [397/718] Installing texlive-everysel-1 100% | 448.6 MiB/s | 459.4 KiB | 00m00s [398/718] Installing texlive-footnotehy 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [399/718] Installing texlive-latexbug-1 100% | 92.4 MiB/s | 283.8 KiB | 00m00s [400/718] Installing texlive-lwarp-11:s 100% | 196.7 MiB/s | 4.9 MiB | 00m00s [401/718] Installing texlive-mdwtools-1 100% | 111.5 MiB/s | 114.2 KiB | 00m00s [402/718] Installing texlive-newfloat-1 100% | 156.0 MiB/s | 159.7 KiB | 00m00s [403/718] Installing texlive-ntgclass-1 100% | 278.5 MiB/s | 285.2 KiB | 00m00s [404/718] Installing texlive-parskip-11 100% | 16.3 MiB/s | 16.7 KiB | 00m00s [405/718] Installing texlive-pdfcolfoot 100% | 329.2 MiB/s | 337.1 KiB | 00m00s [406/718] Installing texlive-rcs-11:svn 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [407/718] Installing texlive-sansmath-1 100% | 0.0 B/s | 9.3 KiB | 00m00s [408/718] Installing texlive-section-11 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [409/718] Installing texlive-sepnum-11: 100% | 0.0 B/s | 15.8 KiB | 00m00s [410/718] Installing texlive-textcase-1 100% | 0.0 B/s | 12.0 KiB | 00m00s [411/718] Installing texlive-epsf-11:sv 100% | 53.2 MiB/s | 54.5 KiB | 00m00s [412/718] Installing texlive-texlive-sc 100% | 40.7 MiB/s | 125.1 KiB | 00m00s [413/718] Installing texlive-babel-engl 100% | 45.4 MiB/s | 46.5 KiB | 00m00s [414/718] Installing texlive-fix2col-11 100% | 17.0 MiB/s | 17.4 KiB | 00m00s [415/718] Installing texlive-latex-lab- 100% | 462.2 MiB/s | 2.3 MiB | 00m00s [416/718] Installing texlive-mfnfss-11: 100% | 24.2 MiB/s | 24.7 KiB | 00m00s [417/718] Installing texlive-mptopdf-11 100% | 75.0 MiB/s | 153.5 KiB | 00m00s [418/718] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [419/718] Installing texlive-pslatex-11 100% | 28.5 MiB/s | 29.2 KiB | 00m00s [420/718] Installing texlive-pspicture- 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [421/718] Installing texlive-transparen 100% | 296.6 MiB/s | 303.7 KiB | 00m00s [422/718] Installing texlive-kastrup-11 100% | 0.0 B/s | 4.2 KiB | 00m00s [423/718] Installing texlive-rsfs-11:sv 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [424/718] Installing texlive-marginnote 100% | 0.0 B/s | 23.3 KiB | 00m00s [425/718] Installing texlive-mparhack-1 100% | 0.0 B/s | 21.1 KiB | 00m00s [426/718] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB | 00m00s [427/718] Installing texlive-finstrut-1 100% | 25.7 MiB/s | 26.4 KiB | 00m00s [428/718] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB | 00m00s [429/718] Installing texlive-luabidi-11 100% | 26.1 MiB/s | 26.8 KiB | 00m00s [430/718] Installing texlive-makecmds-1 100% | 0.0 B/s | 11.9 KiB | 00m00s [431/718] Installing texlive-lm-math-11 100% | 239.9 MiB/s | 736.9 KiB | 00m00s [432/718] Installing texlive-pdfcolmk-1 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [433/718] Installing texlive-xcolor-11: 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [434/718] Installing texlive-eso-pic-11 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [435/718] Installing texlive-ctable-11: 100% | 20.9 MiB/s | 21.4 KiB | 00m00s [436/718] Installing texlive-bibtex-11: 100% | 304.3 MiB/s | 934.8 KiB | 00m00s [437/718] Installing texlive-colorprofi 100% | 66.9 MiB/s | 274.1 KiB | 00m00s [438/718] Installing texlive-ec-11:svn2 100% | 74.1 MiB/s | 2.7 MiB | 00m00s [439/718] Installing texlive-enctex-11: 100% | 91.5 MiB/s | 187.3 KiB | 00m00s [440/718] Installing texlive-hyphenex-1 100% | 25.5 MiB/s | 26.1 KiB | 00m00s [441/718] Installing texlive-knuth-loca 100% | 55.2 MiB/s | 113.1 KiB | 00m00s [442/718] Installing texlive-luahbtex-1 100% | 350.3 MiB/s | 6.3 MiB | 00m00s [443/718] Installing texlive-makeindex- 100% | 212.2 MiB/s | 651.9 KiB | 00m00s [444/718] Installing texlive-mflogo-11: 100% | 13.3 MiB/s | 13.6 KiB | 00m00s [445/718] Installing texlive-mfware-11: 100% | 292.3 MiB/s | 1.2 MiB | 00m00s [446/718] Installing texlive-tex-11:svn 100% | 171.5 MiB/s | 526.9 KiB | 00m00s [447/718] Installing texlive-texlive-en 100% | 494.8 MiB/s | 5.9 MiB | 00m00s [448/718] Installing texlive-texlive-ms 100% | 468.8 MiB/s | 1.4 MiB | 00m00s [449/718] Installing texlive-hobsub-11: 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [450/718] Installing texlive-hyperref-1 100% | 250.5 MiB/s | 769.4 KiB | 00m00s [451/718] Installing texlive-attachfile 100% | 241.6 MiB/s | 494.8 KiB | 00m00s [452/718] Installing texlive-attachfile 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [453/718] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB | 00m00s [454/718] Installing texlive-enumitem-1 100% | 58.7 MiB/s | 60.1 KiB | 00m00s [455/718] Installing texlive-beton-11:s 100% | 0.0 B/s | 12.5 KiB | 00m00s [456/718] Installing texlive-parallel-1 100% | 22.8 MiB/s | 23.3 KiB | 00m00s [457/718] Installing texlive-pdfcol-11: 100% | 169.3 MiB/s | 346.8 KiB | 00m00s [458/718] Installing texlive-avantgar-1 100% | 138.0 MiB/s | 1.2 MiB | 00m00s [459/718] Installing texlive-bookman-11 100% | 137.1 MiB/s | 1.2 MiB | 00m00s [460/718] Installing texlive-charter-11 100% | 101.3 MiB/s | 415.0 KiB | 00m00s [461/718] Installing texlive-courier-11 100% | 130.7 MiB/s | 937.1 KiB | 00m00s [462/718] Installing texlive-helvetic-1 100% | 140.6 MiB/s | 1.8 MiB | 00m00s [463/718] Installing texlive-symbol-11: 100% | 40.0 MiB/s | 82.0 KiB | 00m00s [464/718] Installing texlive-times-11:s 100% | 110.9 MiB/s | 1.0 MiB | 00m00s [465/718] Installing texlive-utopia-11: 100% | 179.5 MiB/s | 551.4 KiB | 00m00s [466/718] Installing texlive-fileconten 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [467/718] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [468/718] Installing texlive-lualibs-11 100% | 251.2 MiB/s | 771.6 KiB | 00m00s [469/718] Installing texlive-changepage 100% | 27.6 MiB/s | 28.2 KiB | 00m00s [470/718] Installing texlive-titlesec-1 100% | 96.6 MiB/s | 98.9 KiB | 00m00s [471/718] Installing texlive-ctablestac 100% | 0.0 B/s | 20.9 KiB | 00m00s [472/718] Installing texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [473/718] Installing texlive-luaotfload 100% | 432.6 MiB/s | 8.2 MiB | 00m00s [474/718] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [475/718] Installing texlive-notoccite- 100% | 2.9 MiB/s | 3.0 KiB | 00m00s [476/718] Installing texlive-fpl-11:svn 100% | 317.9 MiB/s | 651.2 KiB | 00m00s [477/718] Installing texlive-mathpazo-1 100% | 57.0 MiB/s | 116.7 KiB | 00m00s [478/718] Installing texlive-psnfss-11: 100% | 29.2 MiB/s | 119.5 KiB | 00m00s [479/718] Installing texlive-xstring-11 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [480/718] Installing texlive-pst-math-1 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [481/718] Installing texlive-varwidth-1 100% | 0.0 B/s | 20.3 KiB | 00m00s [482/718] Installing texlive-ifmtarg-11 100% | 0.0 B/s | 9.9 KiB | 00m00s [483/718] Installing texlive-xetexconfi 100% | 0.0 B/s | 776.0 B | 00m00s [484/718] Installing perl-LWP-Protocol- 100% | 30.4 MiB/s | 31.1 KiB | 00m00s [485/718] Installing perl-XML-SAX-0:1.0 100% | 2.2 MiB/s | 126.0 KiB | 00m00s [486/718] Installing perl-XML-LibXML-1: 100% | 9.9 MiB/s | 1.0 MiB | 00m00s [487/718] Installing perl-XML-LibXML-Si 100% | 51.1 MiB/s | 52.3 KiB | 00m00s [488/718] Installing perl-XML-LibXSLT-0 100% | 92.0 MiB/s | 282.6 KiB | 00m00s [489/718] Installing perl-Class-Inspect 100% | 57.9 MiB/s | 59.3 KiB | 00m00s [490/718] Installing perl-File-ShareDir 100% | 28.9 MiB/s | 59.2 KiB | 00m00s [491/718] Installing perl-Class-Data-In 100% | 6.9 MiB/s | 7.0 KiB | 00m00s [492/718] Installing perl-Exception-Cla 100% | 92.4 MiB/s | 94.6 KiB | 00m00s [493/718] Installing perl-Ref-Util-XS-0 100% | 102.0 MiB/s | 208.8 KiB | 00m00s [494/718] Installing perl-Ref-Util-0:0. 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [495/718] Installing perl-Class-Method- 100% | 53.5 MiB/s | 109.6 KiB | 00m00s [496/718] Installing perl-Role-Tiny-0:2 100% | 62.0 MiB/s | 63.5 KiB | 00m00s [497/718] Installing perl-Hash-Util-Fie 100% | 115.4 MiB/s | 236.4 KiB | 00m00s [498/718] Installing perl-Variable-Magi 100% | 139.0 MiB/s | 284.7 KiB | 00m00s [499/718] Installing perl-I18N-LangTags 100% | 81.6 MiB/s | 83.6 KiB | 00m00s [500/718] Installing perl-Locale-Makete 100% | 84.9 MiB/s | 173.9 KiB | 00m00s [501/718] Installing perl-Locale-Makete 100% | 13.1 MiB/s | 13.5 KiB | 00m00s [502/718] Installing perl-Params-Check- 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [503/718] Installing perl-Module-Load-C 100% | 29.2 MiB/s | 29.9 KiB | 00m00s [504/718] Installing perl-IPC-Cmd-2:1.0 100% | 83.9 MiB/s | 85.9 KiB | 00m00s [505/718] Installing perl-GSSAPI-0:0.28 100% | 119.3 MiB/s | 244.4 KiB | 00m00s [506/718] Installing perl-Tie-0:4.6-511 100% | 32.9 MiB/s | 33.7 KiB | 00m00s [507/718] Installing perl-Authen-SASL-0 100% | 59.5 MiB/s | 121.8 KiB | 00m00s [508/718] Installing perl-deprecate-0:0 100% | 0.0 B/s | 6.9 KiB | 00m00s [509/718] Installing perl-Text-Soundex- 100% | 113.8 MiB/s | 233.1 KiB | 00m00s [510/718] Installing perl-LDAP-1:0.68-1 100% | 117.5 MiB/s | 962.3 KiB | 00m00s [511/718] Installing perl-Email-Date-Fo 100% | 25.4 MiB/s | 26.0 KiB | 00m00s [512/718] Installing perl-MIME-Types-0: 100% | 180.0 MiB/s | 184.3 KiB | 00m00s [513/718] Installing perl-MIME-Lite-0:3 100% | 121.6 MiB/s | 248.9 KiB | 00m00s [514/718] Installing perl-Net-SMTP-SSL- 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [515/718] Installing perl-MailTools-0:2 100% | 69.2 MiB/s | 212.7 KiB | 00m00s [516/718] Installing perl-English-0:1.1 100% | 6.5 MiB/s | 6.6 KiB | 00m00s [517/718] Installing perltidy-0:2024090 100% | 299.1 MiB/s | 3.9 MiB | 00m00s [518/718] Installing perl-Package-Stash 100% | 110.9 MiB/s | 227.1 KiB | 00m00s [519/718] Installing perl-Package-Stash 100% | 56.8 MiB/s | 58.1 KiB | 00m00s [520/718] Installing perl-DynaLoader-Fu 100% | 20.3 MiB/s | 20.7 KiB | 00m00s [521/718] Installing perl-Devel-CallChe 100% | 214.1 MiB/s | 219.3 KiB | 00m00s [522/718] Installing perl-Params-Classi 100% | 220.3 MiB/s | 225.6 KiB | 00m00s [523/718] Installing perl-DateTime-Time 100% | 28.9 MiB/s | 29.6 KiB | 00m00s [524/718] Installing perl-DateTime-Time 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [525/718] Installing perl-PadWalker-0:2 100% | 209.7 MiB/s | 214.8 KiB | 00m00s [526/718] Installing perl-Devel-Caller- 100% | 204.3 MiB/s | 209.2 KiB | 00m00s [527/718] Installing perl-Devel-LexAlia 100% | 196.3 MiB/s | 201.1 KiB | 00m00s [528/718] Installing perl-Eval-Closure- 100% | 33.8 MiB/s | 34.6 KiB | 00m00s [529/718] Installing perl-Params-Valida 100% | 46.0 MiB/s | 94.2 KiB | 00m00s [530/718] Installing perl-Specio-0:0.48 100% | 67.3 MiB/s | 344.7 KiB | 00m00s [531/718] Installing perl-Package-Gener 100% | 30.8 MiB/s | 31.6 KiB | 00m00s [532/718] Installing perl-Sub-Exporter- 100% | 98.6 MiB/s | 201.9 KiB | 00m00s [533/718] Installing perl-Sub-Exporter- 100% | 28.2 MiB/s | 28.9 KiB | 00m00s [534/718] Installing perl-B-Hooks-EndOf 100% | 12.2 MiB/s | 75.1 KiB | 00m00s [535/718] Installing perl-namespace-cle 100% | 21.8 MiB/s | 44.6 KiB | 00m00s [536/718] Installing perl-namespace-aut 100% | 5.2 MiB/s | 42.6 KiB | 00m00s [537/718] Installing perl-DateTime-Loca 100% | 195.0 MiB/s | 22.8 MiB | 00m00s [538/718] Installing perl-DateTime-Time 100% | 290.6 MiB/s | 6.1 MiB | 00m00s [539/718] Installing perl-DateTime-2:1. 100% | 182.2 MiB/s | 559.8 KiB | 00m00s [540/718] Installing perl-DateTime-Cale 100% | 33.5 MiB/s | 34.3 KiB | 00m00s [541/718] Installing perl-DateTime-Form 100% | 96.4 MiB/s | 98.7 KiB | 00m00s [542/718] Installing perl-DateTime-Form 100% | 52.0 MiB/s | 213.0 KiB | 00m00s [543/718] Installing perl-Devel-GlobalD 100% | 18.6 MiB/s | 19.0 KiB | 00m00s [544/718] Installing perl-Log-Dispatch- 100% | 48.8 MiB/s | 150.0 KiB | 00m00s [545/718] Installing perl-Log-Dispatch- 100% | 53.2 MiB/s | 54.5 KiB | 00m00s [546/718] Installing perl-Log-Log4perl- 100% | 125.2 MiB/s | 897.8 KiB | 00m00s [547/718] Installing biber-0:2.19-6.fc4 100% | 191.4 MiB/s | 1.3 MiB | 00m00s [548/718] Installing libsepol-devel-0:3 100% | 41.6 MiB/s | 127.8 KiB | 00m00s [549/718] Installing libblkid-devel-0:2 100% | 44.9 MiB/s | 46.0 KiB | 00m00s [550/718] Installing tzdata-java-0:2024 100% | 99.7 MiB/s | 102.1 KiB | 00m00s [551/718] Installing lksctp-tools-0:1.0 100% | 419.2 MiB/s | 1.3 MiB | 00m00s [552/718] Installing javapackages-files 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [553/718] Installing alsa-lib-0:1.2.12- 100% | 186.0 MiB/s | 1.9 MiB | 00m00s [554/718] Installing java-21-openjdk-he 100% | 362.1 MiB/s | 211.1 MiB | 00m01s [555/718] Installing kernel-headers-0:6 100% | 128.6 MiB/s | 6.4 MiB | 00m00s [556/718] Installing libxcrypt-devel-0: 100% | 10.6 MiB/s | 32.6 KiB | 00m00s [557/718] Installing glibc-devel-0:2.40 100% | 87.9 MiB/s | 2.3 MiB | 00m00s [558/718] Installing xml-common-0:0.6.3 100% | 26.4 MiB/s | 81.1 KiB | 00m00s [559/718] Installing fontconfig-0:2.15. 100% | 2.1 MiB/s | 2.4 MiB | 00m01s [560/718] Installing texlive-pdftex-11: 100% | 236.4 MiB/s | 4.7 MiB | 00m00s [561/718] Installing texlive-l3packages 100% | 129.6 MiB/s | 265.5 KiB | 00m00s [562/718] Installing texlive-currfile-1 100% | 34.1 MiB/s | 35.0 KiB | 00m00s [563/718] Installing texlive-filehook-1 100% | 18.6 MiB/s | 57.2 KiB | 00m00s [564/718] Installing texlive-pgf-11:svn 100% | 131.8 MiB/s | 4.9 MiB | 00m00s [565/718] Installing texlive-ms-11:svn5 100% | 18.8 MiB/s | 19.3 KiB | 00m00s [566/718] Installing texlive-koma-scrip 100% | 431.8 MiB/s | 9.9 MiB | 00m00s [567/718] Installing texlive-listings-1 100% | 284.6 MiB/s | 582.9 KiB | 00m00s [568/718] Installing texlive-algorithms 100% | 38.2 MiB/s | 39.1 KiB | 00m00s [569/718] Installing texlive-fontspec-1 100% | 322.8 MiB/s | 330.6 KiB | 00m00s [570/718] Installing texlive-xunicode-1 100% | 107.6 MiB/s | 220.3 KiB | 00m00s [571/718] Installing texlive-tipa-11:sv 100% | 237.0 MiB/s | 3.8 MiB | 00m00s [572/718] Installing texlive-cm-super-1 100% | 486.1 MiB/s | 65.1 MiB | 00m00s [573/718] Installing texlive-bera-11:sv 100% | 128.8 MiB/s | 791.2 KiB | 00m00s [574/718] Installing texlive-showexpl-1 100% | 22.0 MiB/s | 22.6 KiB | 00m00s [575/718] Installing texlive-polyglossi 100% | 74.7 MiB/s | 764.6 KiB | 00m00s [576/718] Installing texlive-bidi-11:sv 100% | 149.0 MiB/s | 1.2 MiB | 00m00s [577/718] Installing texlive-xifthen-11 100% | 3.7 MiB/s | 15.2 KiB | 00m00s [578/718] Installing texlive-latex-11:s 100% | 544.4 MiB/s | 40.3 MiB | 00m00s [579/718] Installing texlive-xpatch-11: 100% | 26.9 MiB/s | 27.5 KiB | 00m00s [580/718] Installing texlive-biblatex-1 100% | 242.4 MiB/s | 2.2 MiB | 00m00s [581/718] Installing texlive-l3kernel-1 100% | 340.6 MiB/s | 1.4 MiB | 00m00s [582/718] Installing texlive-fancyvrb-1 100% | 65.9 MiB/s | 67.5 KiB | 00m00s [583/718] Installing texlive-pst-ovl-11 100% | 13.4 MiB/s | 13.8 KiB | 00m00s [584/718] Installing texlive-pst-3d-11: 100% | 20.4 MiB/s | 20.9 KiB | 00m00s [585/718] Installing texlive-pst-coil-1 100% | 21.3 MiB/s | 21.8 KiB | 00m00s [586/718] Installing texlive-pst-eps-11 100% | 16.2 MiB/s | 16.6 KiB | 00m00s [587/718] Installing texlive-pst-fill-1 100% | 23.4 MiB/s | 23.9 KiB | 00m00s [588/718] Installing texlive-pst-grad-1 100% | 21.9 MiB/s | 22.5 KiB | 00m00s [589/718] Installing texlive-pst-node-1 100% | 113.0 MiB/s | 115.8 KiB | 00m00s [590/718] Installing texlive-pst-plot-1 100% | 127.9 MiB/s | 131.0 KiB | 00m00s [591/718] Installing texlive-pst-text-1 100% | 20.8 MiB/s | 21.3 KiB | 00m00s [592/718] Installing texlive-pst-tools- 100% | 27.5 MiB/s | 28.2 KiB | 00m00s [593/718] Installing texlive-pst-tree-1 100% | 42.6 MiB/s | 43.6 KiB | 00m00s [594/718] Installing texlive-pstricks-a 100% | 102.4 MiB/s | 104.9 KiB | 00m00s [595/718] Installing 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.redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [718/718] Installing less-0:661-2.fc41. 100% | 17.3 KiB/s | 872.6 KiB | 00m50s Warning: skipped PGP checks for 1 package from repository: copr_base Complete! Finish: build setup for R-4.4.1-5.fc42.src.rpm Start: rpmbuild R-4.4.1-5.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721606400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.RG51be + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + test -d /builddir/build/BUILD/R-4.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-4.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/R-4.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-4.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-4.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1I727d + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + cd /builddir/build/BUILD/R-4.4.1-build + rm -rf R-4.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/R-4.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd R-4.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch):' Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fixpath --fuzz=0 patching file src/scripts/javareconf.in Hunk #1 succeeded at 79 (offset 1 line). + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LWBg0p + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.4.1 + sed -i -e '/R_LIBS_SITE=/s/^/#/g' etc/Renviron.in + echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}' + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open + export JAVA_HOME=/usr/lib/jvm/jre + JAVA_HOME=/usr/lib/jvm/jre + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2024-06-14 07:01:19.000000000 +0000 +++ ./configure 2024-09-25 10:40:34.279018834 +0000 @@ -12172,7 +12172,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="sed -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -61210,7 +61210,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./tools/config.sub ++ basename ./tools/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub '/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./tools/config.guess ++ basename ./tools/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess '/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh + tee CONFIGURE.log ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=aarch64-redhat-linux --host=aarch64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R --with-system-tre --with-blas=flexiblas --with-lapack --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... aarch64-redhat-linux-gnu checking host system type... aarch64-redhat-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... no checking for byacc... no checking for yacc... no checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for aarch64-redhat-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking for aarch64-redhat-linux-gfortran... no checking for aarch64-redhat-linux-g95... no checking for aarch64-redhat-linux-xlf95... no checking for aarch64-redhat-linux-f95... no checking for aarch64-redhat-linux-fort... no checking for aarch64-redhat-linux-ifort... no checking for aarch64-redhat-linux-ifc... no checking for aarch64-redhat-linux-efc... no checking for aarch64-redhat-linux-pgfortran... no checking for aarch64-redhat-linux-pgf95... no checking for aarch64-redhat-linux-lf95... no checking for aarch64-redhat-linux-ftn... no checking for aarch64-redhat-linux-nagfor... no checking for aarch64-redhat-linux-xlf90... no checking for aarch64-redhat-linux-f90... no checking for aarch64-redhat-linux-pgf90... no checking for aarch64-redhat-linux-pghpf... no checking for aarch64-redhat-linux-epcf90... no checking for aarch64-redhat-linux-g77... no checking for aarch64-redhat-linux-xlf... no checking for aarch64-redhat-linux-f77... no checking for aarch64-redhat-linux-frt... no checking for aarch64-redhat-linux-pgf77... no checking for aarch64-redhat-linux-cf77... no checking for aarch64-redhat-linux-fort77... no checking for aarch64-redhat-linux-fl32... no checking for aarch64-redhat-linux-af77... no checking for gfortran... gfortran checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for aarch64-redhat-linux-gcc... aarch64-redhat-linux-gcc checking whether the compiler supports GNU Objective C... no checking whether aarch64-redhat-linux-gcc accepts -g... no checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu23 is a C23 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-redhat-linux-gnu file names to aarch64-redhat-linux-gnu format... func_convert_file_noop checking how to convert aarch64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-redhat-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for aarch64-redhat-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-redhat-linux-ar... (cached) ar checking for archiver @FILE support... @ checking for aarch64-redhat-linux-strip... no checking for strip... strip checking for aarch64-redhat-linux-ranlib... no checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 12178: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for aarch64-redhat-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... yes checking for features.h... yes checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for egrep -e... (cached) /usr/bin/grep -E checking for GNU C library with version >= 2... yes checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/aarch64-redhat-linux/14 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../.. -lgfortran -lm checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/aarch64-redhat-linux/14 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-redhat-linux/14/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking for ObjC runtime library... checking whether aarch64-redhat-linux-gcc accepts -fobjc-exceptions... no checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking whether g++ supports C++23 features with -std=gnu++23... yes checking whether g++ -std=gnu++17 can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for stpcpy... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime, gmtime, localtime work correctly in 2020... yes checking whether mktime sets errno... yes checking whether mktime works correctly after 2037... yes checking whether mktime works correctly before 1902... yes checking whether mktime works correctly in 1969... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -lflexiblas... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... yes checking for tirpc/rpc/xdr.h... yes checking for XDR library... -ltirpc checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for libdeflate.h... yes checking for libdeflate_alloc_compressor in -ldeflate... yes yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for tre_regncompb in -ltre... yes checking for tre/tre.h... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 8.10.1 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for lpr... no checking for lp... no checking for paperconf... false checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for aarch64-redhat-linux-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... (cached) yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking R is now configured for aarch64-redhat-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer Fortran fixed-form compiler: gfortran -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules Default C++ compiler: g++ -std=gnu++17 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer C++11 compiler: g++ -std=gnu++11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer C++14 compiler: g++ -std=gnu++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer C++17 compiler: g++ -std=gnu++17 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer C++20 compiler: g++ -std=gnu++20 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer C++23 compiler: g++ -std=gnu++23 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer Fortran free-form compiler: gfortran -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules Obj-C compiler: aarch64-redhat-linux-gcc Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(FlexiBlas), LAPACK(in blas), tre, curl, libdeflate Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling, static HTML, libdeflate for lazyload Capabilities skipped: Options not enabled: shared BLAS Recommended packages: yes + cat CONFIGURE.log + grep -A30 'R is now' - + make V=1 make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/etc' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/share' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/scripts' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' mkdir -p -- ../../include make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c uncmin.c -o uncmin.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dchdc.f -o dchdc.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dpbfa.f -o dpbfa.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dpbsl.f -o dpbsl.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dpoco.f -o dpoco.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dpodi.f -o dpodi.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dpofa.f -o dpofa.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dposl.f -o dposl.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dqrdc.f -o dqrdc.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dqrdc2.f -o dqrdc2.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dqrls.f -o dqrls.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dqrsl.f -o dqrsl.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dqrutl.f -o dqrutl.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dsvdc.f -o dsvdc.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dtrco.f -o dtrco.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/appl' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -DR_HOME='"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making clippath.d from clippath.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making flexiblas.d from flexiblas.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making machine.d from machine.c making main.d from main.c making mapply.d from mapply.c making mask.d from mask.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c CommandLineArgs.c -o CommandLineArgs.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Rdynload.c -o Rdynload.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Renviron.c -o Renviron.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RNG.c -o RNG.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agrep.c -o agrep.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c altclasses.c -o altclasses.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c altrep.c -o altrep.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c apply.c -o apply.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c arithmetic.c -o arithmetic.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c array.c -o array.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c attrib.c -o attrib.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bind.c -o bind.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c builtin.c -o builtin.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c character.c -o character.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clippath.c -o clippath.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coerce.c -o coerce.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c colors.c -o colors.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c complex.c -o complex.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c connections.c -o connections.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c context.c -o context.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cum.c -o cum.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dcf.c -o dcf.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c datetime.c -o datetime.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c debug.c -o debug.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c deparse.c -o deparse.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devices.c -o devices.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dotcode.c -o dotcode.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dounzip.c -o dounzip.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dstruct.c -o dstruct.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c duplicate.c -o duplicate.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c edit.c -o edit.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c engine.c -o engine.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c envir.c -o envir.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c errors.c -o errors.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c eval.c -o eval.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c flexiblas.c -o flexiblas.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c format.c -o format.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gevents.c -o gevents.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gram.c -o gram.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gram-ex.c -o gram-ex.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c graphics.c -o graphics.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c grep.c -o grep.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c identical.c -o identical.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c inlined.c -o inlined.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c inspect.c -o inspect.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c internet.c -o internet.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c iosupport.c -o iosupport.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lapack.c -o lapack.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c list.c -o list.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c localecharset.c -o localecharset.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c logic.c -o logic.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c machine.c -o machine.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c main.c -o main.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mapply.c -o mapply.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mask.c -o mask.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match.c -o match.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c memory.c -o memory.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c names.c -o names.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c objects.c -o objects.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c options.c -o options.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c paste.c -o paste.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c patterns.c -o patterns.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c platform.c -o platform.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plot.c -o plot.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plot3d.c -o plot3d.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plotmath.c -o plotmath.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c print.c -o print.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c printarray.c -o printarray.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c printvector.c -o printvector.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c printutils.c -o printutils.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qsort.c -o qsort.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c radixsort.c -o radixsort.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c random.c -o random.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c raw.c -o raw.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c registration.c -o registration.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c relop.c -o relop.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlocale.c -o rlocale.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c saveload.c -o saveload.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c scan.c -o scan.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c seq.c -o seq.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c serialize.c -o serialize.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sort.c -o sort.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c source.c -o source.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c split.c -o split.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sprintf.c -o sprintf.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c startup.c -o startup.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c subassign.c -o subassign.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c subscript.c -o subscript.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c subset.c -o subset.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c summary.c -o summary.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sysutils.c -o sysutils.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c times.c -o times.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c unique.c -o unique.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c util.c -o util.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c version.c -o version.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c g_alab_her.c -o g_alab_her.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c g_cntrlify.c -o g_cntrlify.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c g_fontdb.c -o g_fontdb.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c g_her_glyph.c -o g_her_glyph.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` -lflexiblas -lgfortran -lm -lreadline -ltre -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/bin/exec mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o R.bin Rmain.o -lR make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/modules make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lapack.c -o Lapack.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ../../main/flexiblas.c -o flexiblas.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o lapack.so Lapack.o flexiblas.o -lR -lflexiblas -lgfortran -lm make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm gcc -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/webp -DWITH_GZFILEOP -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -DWITH_GZFILEOP -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' mkdir -p -- ../../library make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/profile' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/translations' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/translations' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/translations' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' building package 'base' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gramRd.c -o gramRd.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pdscan.c -o pdscan.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/compiler' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/compiler' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/compiler' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c making hashtab.d from hashtab.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils.c -o utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c hashtab.c -o hashtab.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/utils' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/fonts/Roboto mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making group.d from group.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c group.c -o group.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src/cairo' make[9]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I/usr/include/libpng16 -DWITH_GZFILEOP -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16 -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src/cairo' make[8]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src/cairo' make[7]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src/cairo' make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grDevices' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/graphics' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c influence.c -o influence.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c stl.f -o stl.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c portsrc.f -o portsrc.o portsrc.f: In function ‘i7do_’: portsrc.f:6574:44: warning: ‘jcol’ may be used uninitialized [-Wmaybe-uninitialized] 6574 | INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC, | ^ portsrc.f: In function ‘dl7mst_’: portsrc.f:5658:18: warning: ‘psifac’ may be used uninitialized [-Wmaybe-uninitialized] 5658 | IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 | ^ portsrc.f:5378:62: note: ‘psifac’ was declared here 5378 | 1 LK, OLDPHI, PHI, PHIMAX, PHIMIN, PSIFAC, RAD, | ^ portsrc.f:5521:51: warning: ‘alphak’ may be used uninitialized [-Wmaybe-uninitialized] 5521 | IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ portsrc.f:5377:37: note: ‘alphak’ was declared here 5377 | DOUBLE PRECISION A, ADI, ALPHAK, B, DFACSQ, DST, DTOL, D1, D2, | ^ portsrc.f: In function ‘dg7qts_’: portsrc.f:10324:72: warning: ‘phi’ may be used uninitialized [-Wmaybe-uninitialized] 10324 | LK = DMAX1(LK, PHI*W(PHIPIN)) | ^ portsrc.f:10077:34: note: ‘phi’ was declared here 10077 | 1 OLDPHI, PHI, PHIMAX, PHIMIN, PSIFAC, RAD, RADSQ, | ^ portsrc.f:10466:10: warning: ‘kamin’ may be used uninitialized [-Wmaybe-uninitialized] 10466 | IF (KA .GE. KAMIN) GO TO 340 | ^ portsrc.f:10075:32: note: ‘kamin’ was declared here 10075 | 1 J, K, KALIM, KAMIN, K1, LK0, PHIPIN, Q, Q0, UK0, X | ^ portsrc.f:10329:55: warning: ‘alphak’ may be used uninitialized [-Wmaybe-uninitialized] 10329 | IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ portsrc.f:10076:29: note: ‘alphak’ was declared here 10076 | DOUBLE PRECISION ALPHAK, AKI, AKK, DELTA, DST, EPS, GTSTA, LK, | ^ portsrc.f: In function ‘dd7dgb_’: portsrc.f:12246:72: warning: ‘dnwtst’ may be used uninitialized [-Wmaybe-uninitialized] 12246 | V(DST0) = DNWTST | ^ portsrc.f:12105:29: note: ‘dnwtst’ was declared here 12105 | DOUBLE PRECISION DNWTST, GHINVG, GNORM, GNORM0, NRED, PRED, RAD, | ^ portsrc.f:12243:72: warning: ‘nred’ may be used uninitialized [-Wmaybe-uninitialized] 12243 | V(NREDUC) = NRED | ^ portsrc.f:12105:58: note: ‘nred’ was declared here 12105 | DOUBLE PRECISION DNWTST, GHINVG, GNORM, GNORM0, NRED, PRED, RAD, | ^ portsrc.f: In function ‘dg7qsb_’: portsrc.f:2457:32: warning: ‘nred’ may be used uninitialized [-Wmaybe-uninitialized] 2457 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ portsrc.f:2514:72: warning: ‘ds0’ may be used uninitialized [-Wmaybe-uninitialized] 2514 | 60 V(DST0) = DS0 | ^ portsrc.f:2457:26: note: ‘ds0’ was declared here 2457 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ portsrc.f: In function ‘dl7msb_’: portsrc.f:8086:32: warning: ‘nred’ may be used uninitialized [-Wmaybe-uninitialized] 8086 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ portsrc.f:8173:72: warning: ‘ds0’ may be used uninitialized [-Wmaybe-uninitialized] 8173 | 90 V(DST0) = DS0 | ^ portsrc.f:8086:26: note: ‘ds0’ was declared here 8086 | DOUBLE PRECISION DS0, NRED, PRED, RAD | ^ portsrc.f: In function ‘df7hes_’: portsrc.f:8652:72: warning: ‘hes’ may be used uninitialized [-Wmaybe-uninitialized] 8652 | 210 IV(FDH) = HES | ^ portsrc.f:8450:25: note: ‘hes’ was declared here 8450 | INTEGER GSAVE1, HES, HMI, HPI, HPM, I, K, KIND, L, M, MM1, MM1O2, | ^ portsrc.f: In function ‘dparck_’: portsrc.f:3587:10: warning: ‘miv2’ may be used uninitialized [-Wmaybe-uninitialized] 3587 | IF (LIV .LT. MIV2) GO TO 300 | ^ portsrc.f:3520:54: note: ‘miv2’ was declared here 3520 | INTEGER ALG1, I, II, IV1, J, K, L, M, MIV1, MIV2, NDFALT, PARSV1, | ^ portsrc.f: In function ‘drn2gb_’: portsrc.f:12079:72: warning: ‘g1’ may be used uninitialized [-Wmaybe-uninitialized] 12079 | 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | ^ portsrc.f:11822:16: note: ‘g1’ was declared here 11822 | INTEGER G1, GI, I, IV1, IVMODE, JTOL1, L, LH, NN, QTR1, | ^ portsrc.f: In function ‘drn2g_’: portsrc.f:458:72: warning: ‘g1’ may be used uninitialized [-Wmaybe-uninitialized] 458 | 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | ^ portsrc.f:157:16: note: ‘g1’ was declared here 157 | INTEGER G1, GI, I, IV1, IVMODE, JTOL1, K, L, LH, NN, QTR1, | ^ gfortran -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lgfortran -lm -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/datasets' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/datasets' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/methods' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making path.d from path.c making register.d from register.c making state.d from state.c making typeset.d from typeset.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c path.c -o path.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c typeset.c -o typeset.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/grid' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/splines' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats4' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats4' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/stats4' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk/src' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/tcltk' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' make[5]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/parallel' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' you should 'make docs' now ... make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' creating doc/NEWS creating doc/NEWS.pdf make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/html' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' installing parsed Rd make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' building/updating package metadata ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' writing package indices make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' building all R object docs converting help for package 'base' abbreviate html agrep html all.equal html all html allnames html any html aperm html append html apply html args html Arithmetic html array html array2DF html as.data.frame html as.Date html as.environment html as.function html as.POSIXlt html AsIs html asplit html assign html assignOps html attach html attr html attributes html autoload html backsolve html balancePOSIXlt html base-defunct html base-deprecated html base-internal html base-package html basename html Bessel html bincode html bindenv html bitwise html body html bquote html browser html browserText html builtins html by html c html call html callCC html CallExternal html capabilities html cat html cbind html char.expand html character html charmatch html chartr html chkDots html chol html chol2inv html chooseOpsMethod html class html col html colnames html Colon html colSums html commandArgs html comment html Comparison html complex html conditions html conflicts html connections html Constants html contributors html Control html copyright html crossprod html Cstack_info html cumsum html curlGetHeaders html cut.POSIXt html cut html data.class html data.frame html data.matrix html dataframeHelpers html date html Dates html DateTimeClasses html dcf html debug html declare html Defunct html delayedAssign html deparse html deparseOpts html Deprecated html det html detach html dev html diag html diff html difftime html dim html dimnames html do.call html dontCheck html dots html double html dput html drop html droplevels html dump html duplicated html dynload html eapply html eigen html encodeString html Encoding html environment html EnvVar html eval html exists html expand.grid html expression html Extract.data.frame html Extract.factor html Extract html Extremes html extSoftVersion html factor html file.access html file.choose html file.info html file.path html file.show html files html files2 html find.package html findInterval html force html forceAndCall html Foreign-internal html Foreign html formals html format.info html format.pval html format html formatc html formatDL html function html funprog html gc html gc.time html gctorture html get html getCallingDLL html getDLLRegisteredRoutines html getLoadedDLLs html getNativeSymbolInfo html gettext html getwd html gl html grep html grepRaw html groupGeneric html grouping html gzcon html hexmode html Hyperbolic html iconv html icuSetCollate html identical html identity html ifelse html integer html interaction html interactive html Internal html InternalMethods html invisible html is.finite html is.function html is.language html is.object html is.recursive html is.single html is.unsorted html ISOdatetime html isS4 html isSymmetric html jitter html kappa html kronecker html l10n_info html La_library html La_version html labels html lapply html Last.value html lazyload html length html lengths html levels html libcurlVersion html libPaths html library.dynam html library html license html list.files html list html list2DF html list2env html load html locales html Log html Logic html logical html LongVectors html lower.tri html ls html make.names html make.unique html mapply html marginSums html mat.or.vec html match.arg html match.call html match.fun html match html MathFun html matmult html matrix html maxCol html mean html memCompress html memlimits html Memory-limits html memory.profile html Memory html merge html message html missing html mode html mtfrm html NA html name html names html nargs html nchar html nlevels html noquote html norm html normalizePath html notyet html nrow html ns-dblcolon html ns-hooks html ns-internal html ns-load html ns-reflect html ns-topenv html NULL html numeric_version html numeric html NumericConstants html octmode html on.exit html Ops.Date html options html order html outer html Paren html parse html paste html path.expand html pcre_config html pipeOp html Platform html plot html pmatch html polyroot html pos.to.env html pretty html Primitive html print.dataframe html print.default html print html prmatrix html proc.time html prod html proportions html pushBack html qr html qraux html quit html Quotes html Random-user html Random html range html rank html rapply html raw html rawConnection html rawConversion html RdUtils html readBin html readChar html readline html readLines html readRDS html readRenviron html Recall html reg.finalizer html regex html regmatches html rep html replace html Reserved html rev html Rhome html rle html rm html round.POSIXt html Round html row.names html row html rowsum html S3method html sample html save html scale html scan html search html seek html seq.Date html seq.POSIXt html seq html sequence html serialize html sets html setTimeLimit html showConnections html shQuote html sign html sink html slice.index html slotOp html socketSelect html solve html sort_by html sort html source html Special html split html sprintf html sQuote html srcfile html StackOverflows html standardGeneric html startsWith html Startup html stop html stopifnot html strptime html strrep html strsplit html strtoi html strtrim html structure html strwrap html subset html substitute html substr html sum html summary html svd html sweep html switch html Syntax html Sys.getenv html Sys.getpid html Sys.glob html Sys.info html Sys.localeconv html sys.parent html Sys.readlink html Sys.setenv html Sys.setFileTime html Sys.sleep html sys.source html Sys.time html Sys.which html system.file html system html system.time html system2 html t html table html tabulate html Tailcall html tapply html taskCallback html taskCallbackManager html taskCallbackNames html tempfile html textconnections html tilde html timezones html toString html trace html traceback html tracemem html transform html Trig html trimws html try html typeof html unique html units html unlink html unlist html unname html use html UseMethod html userhooks html utf8Conversion html UTF8filepaths html validUTF8 html vector html Vectorize html Version html warning html warnings html weekday.POSIXt html which.min html which html with html withVisible html write html writeLines html xtfrm html zapsmall html zMachine html zpackages html zScript html zutils html Signals html converting help for package 'tools' add_datalist html assertCondition html bibstyle html buildVignette html buildVignettes html charsets html check_packages_in_dir html checkFF html checkMD5sums html checkPoFiles html checkRd html checkRdaFiles html checkTnF html checkVignettes html codoc html compactPDF html CRANtools html delimMatch html dependsOnPkgs html encoded html fileutils html find_gs_cmd html getVignetteInfo html HTMLheader html HTMLlinks html loadRdMacros html make_translations_pkg html makeLazyLoading html makevars html matchConcordance html md5sum html package_dependencies html package_native_routine_registration_skeleton html parse_Rd html parseLatex html pkg2HTML html print.via.format html pskill html psnice html QC html Rcmd html Rd2HTML html Rd2txt_options html Rdiff html Rdindex html RdTextFilter html Rdutils html read.00Index html showNonASCII html startDynamicHelp html SweaveTeXFilter html testInstalledPackage html texi2dvi html toHTML html tools-defunct html tools-deprecated html tools-package html toRd html toTitleCase html undoc html update_pkg_po html updatePACKAGES html userdir html vignetteEngine html vignetteInfo html writePACKAGES html xgettext html converting help for package 'utils' adist html alarm html apropos html aregexec html arrangeWindows html askYesNo html aspell-utils html aspell html available.packages html BATCH html bibentry html browseEnv html browseURL html browseVignettes html bug.report html capture.output html changedFiles html charClass html choose.dir html choose.files html chooseBioCmirror html chooseCRANmirror html citation html cite html citEntry html clipboard html close.socket html combn html compareVersion html COMPILE html contrib.url html count.fields html create.post html data html dataentry html debugcall html debugger html demo html DLL.version html download.file html download.packages html edit.data.frame html edit html example html file.edit html filetest html findCRANmirror html findLineNum html fix html flush.console html format html getAnywhere html getFromNamespace html getParseData html getS3method html getWindowsHandle html getWindowsHandles html glob2rx html globalVariables html hashtab html hasName html head html help html help.request html help.search html help.start html hsearch-utils html install.packages html INSTALL html installed.packages html isS3method html isS3stdGen html LINK html localeToCharset html ls_str html maintainer html make.packages.html html make.socket html memory.size html menu html methods html mirrorAdmin html modifyList html news html nsl html object.size html package.skeleton html packageDescription html packageName html packageStatus html page html person html personList html PkgUtils html process.events html prompt html promptData html promptPackage html Question html rcompgen html Rconsole html read.DIF html read.fortran html read.fwf html read.socket html read.table html readRegistry html recover html relist html remove.packages html REMOVE html removeSource html RHOME html roman html Rprof html Rprofmem html Rscript html RShowDoc html RSiteSearch html rtags html Rtangle html RweaveLatex html savehistory html select.list html sessionInfo html setRepositories html setWindowTitle html SHLIB html shortPathName html sourceutils html stack html str html strcapture html summaryRprof html Sweave html SweaveSyntConv html SweaveUtils html tar html toLatex html txtProgressBar html type.convert html untar html unzip html update.packages html upgrade html url.show html URLencode html utils-defunct html utils-deprecated html utils-internal html utils-package html View html vignette html warnErrList html winDialog html winextras html winMenus html winProgressBar html write.table html zip html converting help for package 'grDevices' adjustcolor html as.graphicsAnnot html as.raster html axisTicks html boxplot.stats html bringToTop html cairo html cairoSymbolFont html check.options html chull html cm html col2rgb html colorRamp html colors html contourLines html convertColor html densCols html dev.capabilities html dev.capture html dev.flush html dev.interactive html dev html dev.size html dev2 html dev2bitmap html devAskNewPage html Devices html embedFonts html extendrange html getGraphicsEvent html glyphInfo html gray.colors html gray html grDevices-internal html grDevices-package html grSoftVersion html hcl html Hershey html hsv html Japanese html make.rgb html msgWindow html n2mfrow html nclass html palette html palettes html pdf.options html pdf html pictex html plotmath html postscript html postscriptFonts html pretty.Date html ps.options html quartz html quartzFonts html recordGraphics html recordplot html rgb html rgb2hsv html trans3d html Type1Font html windows.options html windows html windowsFonts html x11 html x11Fonts html xfig html xy.coords html xyTable html xyz.coords html png html savePlot html converting help for package 'graphics' abline html arrows html assocplot html axis.POSIXct html axis html axTicks html barplot html box html boxplot.matrix html boxplot html bxp html cdplot html clip html contour html convertXY html coplot html curve html dotchart html filled.contour html fourfoldplot html frame html graphics-defunct html graphics-package html grid html hist.POSIXt html hist html identify html image html layout html legend html lines html locator html matplot html mosaicplot html mtext html pairs html panel.smooth html par html persp html pie html plot.dataframe html plot.default html plot.design html plot.factor html plot.formula html plot.raster html plot.table html plot.window html plot.xy html plothistogram html points html polygon html polypath html rasterImage html rect html rug html screen html segments html smoothScatter html spineplot html stars html stem html stripchart html strwidth html sunflowerplot html symbols html text html title html units html xspline html zAxis html converting help for package 'stats' acf html acf2AR html add1 html addmargins html aggregate html AIC html alias html anova.glm html anova.lm html anova.mlm html anova html ansari.test html aov html approxfun html ar.ols html ar html arima html arima.sim html arima0 html ARMAacf html ARMAtoMA html as.hclust html asOneSidedFormula html ave html bandwidth html bartlett.test html Beta html binom.test html Binomial html biplot.princomp html biplot html birthday html box.test html cancor html case.names html Cauchy html checkMFClasses html chisq.test html Chisquare html cmdscale html coef html complete.cases html confint html constrOptim html contrast html contrasts html convolve html cophenetic html cor html cor.test html cov.wt html cpgram html cutree html decompose html delete.response html dendrapply html dendrogram html density html deriv html deviance html df.residual html diffinv html dist html Distributions html dummy.coef html ecdf html eff.aovlist html effects html embed html expand.model.frame html Exponential html extractAIC html factanal html factor.scope html family html Fdist html fft html filter html fisher.test html fitted.values html fivenum html fligner.test html formula.nls html formula html friedman.test html ftable.formula html ftable html GammaDist html Geometric html getInitial html glm.control html glm html glm.summaries html hclust html heatmap html HoltWinters html Hypergeometric html identify.hclust html influence.measures html integrate html interaction.plot html IQR html is.empty html isoreg html KalmanLike html kernapply html kernel html kmeans html kruskal.test html ks.test html ksmooth html lag.plot html lag html line html listof html lm.influence html lm html lm.summaries html lmfit html loadings html loess.control html loess html Logistic html logLik html loglin html Lognormal html lowess html ls.diag html ls.print html lsfit html mad html mahalanobis html make.link html makepredictcall html manova html mantelhaen.test html mauchly.test html mcnemar.test html median html medpolish html model.extract html model.frame html model.matrix html model.tables html monthplot html mood.test html Multinom html na.action html na.contiguous html na.fail html nafns html naprint html NegBinomial html nextn html nlm html nlminb html nls.control html nls html NLSstAsymptotic html NLSstClosestX html NLSstLfAsymptote html NLSstRtAsymptote html nobs html Normal html numericDeriv html offset html oneway.test html optim html optimize html order.dendrogram html p.adjust html Pair html pairwise.prop.test html pairwise.t.test html pairwise.table html pairwise.wilcox.test html plot.acf html plot.density html plot.HoltWinters html plot.isoreg html plot.lm html plot.ppr html plot.profile.nls html plot.profile html plot.spec html plot.stepfun html plot.ts html Poisson html poisson.test html poly html power.anova.test html power.prop.test html power html power.t.test html pp.test html ppoints html ppr html prcomp html predict.arima html predict.glm html predict.HoltWinters html predict.lm html predict.loess html predict.nls html predict html predict.smooth.spline html preplot html princomp html print.power.htest html print.ts html printCoefmat html profile.glm html profile.nls html profile html proj html prop.test html prop.trend.test html qqnorm html quade.test html quantile html r2dtable html read.ftable html rect.hclust html relevel html reorder.dendrogram html reorder.factor html replications html reshape html residuals html runmed html rWishart html scatter.smooth html screeplot html sd html se.contrast html selfStart html setNames html shapiro.test html sigma html SignRank html simulate html Smirnov html smooth html smooth.spline html smoothEnds html sortedXyData html spec.ar html spec.pgram html spec.taper html spectrum html splinefun html SSasymp html SSasympOff html SSasympOrig html SSbiexp html SSD html SSfol html SSfpl html SSgompertz html SSlogis html SSmicmen html SSweibull html start html stat.anova html stats-defunct html stats-deprecated html stats-package html step html stepfun html stl html stlmethods html StructTS html summary.aov html summary.glm html summary.lm html summary.manova html summary.nls html summary.princomp html supsmu html symnum html t.test html TDist html termplot html terms.formula html terms.object html terms html time html toeplitz html ts-methods html ts.plot html ts html ts.union html tsdiag html tsp html tsSmooth html Tukey html TukeyHSD html Uniform html uniroot html update.formula html update html var.test html varimax html vcov html Weibull html weighted.mean html weighted.residuals html weights html wilcox.test html Wilcoxon html window html xtabs html zC html converting help for package 'datasets' ability.cov html airmiles html AirPassengers html airquality html anscombe html attenu html attitude html austres html beavers html BJsales html BOD html cars html ChickWeight html chickwts html co2 html crimtab html datasets-package html discoveries html DNase html esoph html euro html eurodist html EuStockMarkets html faithful html Formaldehyde html freeny html HairEyeColor html Harman23.cor html Harman74.cor html Indometh html infert html InsectSprays html iris html islands html JohnsonJohnson html LakeHuron html lh html LifeCycleSavings html Loblolly html longley html lynx html morley html mtcars html nhtemp html Nile html nottem html npk html occupationalStatus html Orange html OrchardSprays html PlantGrowth html precip html presidents html pressure html Puromycin html quakes html randu html rivers html rock html sleep html stackloss html state html sunspot.month html sunspot.year html sunspots html swiss html Theoph html Titanic html ToothGrowth html treering html trees html UCBAdmissions html UKDriverDeaths html UKgas html UKLungDeaths html USAccDeaths html USArrests html USJudgeRatings html USPersonalExpenditure html uspop html VADeaths html volcano html warpbreaks html women html WorldPhones html WWWusage html zCO2 html converting help for package 'methods' as html BasicClasses html callGeneric html canCoerce html cbind2 html Classes_Details html Classes html classesToAM html className html classRepresentation-class html Documentation html dotsMethods html EmptyMethodsList-class html EnvironmentClass html evalSource html findClass html findMethods html fixPrevious html genericFunction-class html GenericFunctions html getClass html getMethod html getPackageName html hasArg html implicitGeneric html inheritedSlotNames html initialize-methods html Introduction html is html isSealedMethod html LanguageClasses html languageEl html LinearMethodsList-class html localRefClass html method.skeleton html MethodDefinition-class html Methods_Details html Methods_for_Nongenerics html Methods_for_S3 html methods-defunct html methods-deprecated html methods-package html Methods html MethodsList-class html MethodsList html MethodSupport html methodUtilities html MethodWithNext-class html new html NextMethod html nonStructure-class html ObjectsWithPackage-class html promptClass html promptMethods html RClassUtils html refClass html removeMethod html representation html RMethodUtils html S3Part html S4groupGeneric html SClassExtension-class html selectSuperClasses html setAs html setClass html setClassUnion html setGeneric html setGroupGeneric html setIs html setLoadActions html setMethod html setOldClass html setSClass html show html showMethods html signature-class html slot html stdRefClass html StructureClasses html substituteDirect html testInheritedMethods html TraceClasses html validObject html zBasicFunsList html converting help for package 'grid' absolute.size html arrow html as.mask html calcStringMetric html current.viewport html dataViewport html depth html deviceLoc html drawDetails html editDetails html editViewport html explode html gEdit html getNames html gpar html gPath html grid-defunct html grid-internal html grid-package html grid.add html grid.bezier html grid.cap html grid.circle html grid.clip html grid.convert html grid.copy html grid.curve html grid.delay html grid.display.list html grid.DLapply html grid.draw html grid.edit html grid.force html grid.frame html grid.function html grid.get html grid.glyph html grid.grab html grid.grep html grid.grill html grid.grob html grid.group html grid.layout html grid.lines html grid.locator html grid.ls html grid.move.to html grid.newpage html grid.null html grid.pack html grid.path html grid.place html grid.plot.and.legend html grid.points html grid.polygon html grid.pretty html grid.raster html Grid html grid.record html grid.rect html grid.refresh html grid.remove html grid.reorder html grid.roundrect html grid.segments html grid.set html grid.show.layout html grid.show.viewport html grid.stroke html grid.text html grid.xaxis html grid.xspline html grid.yaxis html gridCoords html grobCoords html grobName html grobWidth html grobX html legendGrob html makeContent html patterns html plotViewport html resolveRasterSize html showGrob html showViewport html stringWidth html unit.c html unit.length html unit.pmin html unit html unit.rep html unitType html valid.just html validDetails html viewport html viewports html viewportTransform html vpPath html widthDetails html xDetails html xsplinePoints html converting help for package 'splines' asVector html backSpline html bs html interpSpline html ns html periodicSpline html polySpline html predict.bs html predict.bSpline html splineDesign html splineKnots html splineOrder html splines-package html xyVector html converting help for package 'stats4' coef-methods html confint-methods html logLik-methods html mle-class html mle html plot-methods html profile-methods html profile.mle-class html show-methods html stats4-package html summary-methods html summary.mle-class html update-methods html vcov-methods html converting help for package 'tcltk' TclInterface html tclServiceMode html tcltk-defunct html tcltk-package html tk_choose.dir html tk_choose.files html tk_messageBox html tk_select.list html TkCommands html tkpager html tkProgressBar html tkStartGUI html TkWidgetcmds html TkWidgets html converting help for package 'compiler' compile html converting help for package 'parallel' clusterApply html detectCores html makeCluster html parallel-package html RngStream html splitIndices html children html mcaffinity html mcfork html mclapply html mcparallel html pvec html make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/Recommended' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/Recommended' begin installing recommended package MASS * installing *source* package ‘MASS’ ... ** package ‘MASS’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpyjLTQf/R.INSTALL44c33a3233f1/MASS/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c MASS.c -o MASS.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lqs.c -o lqs.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpyjLTQf/R.INSTALL44c33a3233f1/MASS/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘MASS’ finding HTML links ... done Aids2 html Animals html Boston html Cars93 html Cushings html DDT html GAGurine html Insurance html MASS-internal html Melanoma html Null html OME html Pima.tr html Rabbit html Rubber html SP500 html Sitka html Sitka89 html Skye html Traffic html UScereal html UScrime html VA html abbey html accdeaths html addterm html anorexia html anova.negbin html area html bacteria html bandwidth.nrd html bcv html beav1 html beav2 html biopsy html birthwt html boxcox html cabbages html caith html cats html cement html chem html con2tr html confint html contr.sdif html coop html corresp html cov.rob html cov.trob html cpus html crabs html deaths html denumerate html dose.p html drivers html dropterm html eagles html epil html eqscplot html farms html fgl html fitdistr html forbes html fractions html galaxies html gamma.dispersion html gamma.shape.glm html gehan html genotype html geyser html gilgais html ginv html glm.convert html glm.nb html glmmPQL html hills html hist.scott html housing html huber html hubers html immer html isoMDS html kde2d html lda html ldahist html leuk html lm.gls html lm.ridge html loglm html loglm1 html logtrans html lqs html mammals html mca html mcycle html menarche html michelson html minn38 html motors html muscle html mvrnorm html negative.binomial html newcomb html nlschools html npk html npr1 html oats html painters html pairs.lda html parcoord html petrol html phones html plot.lda html plot.mca html polr html predict.glmmPQL html predict.lda html predict.lqs html predict.mca html predict.qda html profile.glm html qda html quine html rational html renumerate html rlm html rms.curv html rnegbin html road html rotifer html sammon html ships html shoes html shrimp html shuttle html snails html stdres html steam html stepAIC html stormer html studres html summary.loglm html summary.negbin html summary.rlm html survey html synth.tr html theta.md html topo html truehist html ucv html waders html whiteside html width.SJ html write.matrix html wtloss html ** building package indices ** testing if installed package can be loaded * DONE (MASS) Making 'packages.html' ... done begin installing recommended package lattice * installing *source* package ‘lattice’ ... ** package ‘lattice’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/Rtmpkgqb6L/R.INSTALL44fe76ebd84a/lattice/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c threeDplot.c -o threeDplot.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/Rtmpkgqb6L/R.INSTALL44fe76ebd84a/lattice/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘lattice’ finding HTML links ... done Lattice html Rows html USMortality html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html standard.theme html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (lattice) Making 'packages.html' ... done begin installing recommended package Matrix * installing *source* package ‘Matrix’ ... ** package ‘Matrix’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Csparse.c -o Csparse.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c attrib.c -o attrib.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bind.c -o bind.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cholmod-common.c -o cholmod-common.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cholmod-etc.c -o cholmod-etc.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coerce.c -o coerce.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cs-etc.c -o cs-etc.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dense.c -o dense.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c determinant.c -o determinant.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c expm.c -o expm.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c factor.c -o factor.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c idz.c -o idz.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c kappa.c -o kappa.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c matmult.c -o matmult.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c objects.c -o objects.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c perm.c -o perm.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c solve.c -o solve.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sparse.c -o sparse.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c subassign.c -o subassign.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c subscript.c -o subscript.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils-R.c -o utils-R.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils.c -o utils.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c validity.c -o validity.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c vector.c -o vector.o cd SuiteSparse/CHOLMOD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Check/cholmod_check.c -o Check/cholmod_check.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Check/cholmod_l_check.c -o Check/cholmod_l_check.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Check/cholmod_read.c -o Check/cholmod_read.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Check/cholmod_l_read.c -o Check/cholmod_l_read.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Check/cholmod_write.c -o Check/cholmod_write.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Check/cholmod_l_write.c -o Check/cholmod_l_write.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_amd.c -o Cholesky/cholmod_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_amd.c -o Cholesky/cholmod_l_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_analyze.c -o Cholesky/cholmod_analyze.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_analyze.c -o Cholesky/cholmod_l_analyze.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_colamd.c -o Cholesky/cholmod_colamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_colamd.c -o Cholesky/cholmod_l_colamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_etree.c -o Cholesky/cholmod_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_etree.c -o Cholesky/cholmod_l_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_factorize.c -o Cholesky/cholmod_factorize.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_factorize.c -o Cholesky/cholmod_l_factorize.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_postorder.c -o Cholesky/cholmod_postorder.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_postorder.c -o Cholesky/cholmod_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_rcond.c -o Cholesky/cholmod_rcond.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_rcond.c -o Cholesky/cholmod_l_rcond.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_resymbol.c -o Cholesky/cholmod_resymbol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_resymbol.c -o Cholesky/cholmod_l_resymbol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_rowcolcounts.c -o Cholesky/cholmod_rowcolcounts.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_rowcolcounts.c -o Cholesky/cholmod_l_rowcolcounts.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_rowfac.c -o Cholesky/cholmod_rowfac.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_rowfac.c -o Cholesky/cholmod_l_rowfac.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_solve.c -o Cholesky/cholmod_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_solve.c -o Cholesky/cholmod_l_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_spsolve.c -o Cholesky/cholmod_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Cholesky/cholmod_l_spsolve.c -o Cholesky/cholmod_l_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_aat.c -o Utility/cholmod_aat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_aat.c -o Utility/cholmod_l_aat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_add.c -o Utility/cholmod_add.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_add.c -o Utility/cholmod_l_add.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_add_size_t.c -o Utility/cholmod_add_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_add_size_t.c -o Utility/cholmod_l_add_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_alloc_factor.c -o Utility/cholmod_alloc_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_alloc_factor.c -o Utility/cholmod_l_alloc_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_alloc_work.c -o Utility/cholmod_alloc_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_alloc_work.c -o Utility/cholmod_l_alloc_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_dense.c -o Utility/cholmod_allocate_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_dense.c -o Utility/cholmod_l_allocate_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_factor.c -o Utility/cholmod_allocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_factor.c -o Utility/cholmod_l_allocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_sparse.c -o Utility/cholmod_allocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_sparse.c -o Utility/cholmod_l_allocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_triplet.c -o Utility/cholmod_allocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_triplet.c -o Utility/cholmod_l_allocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_allocate_work.c -o Utility/cholmod_allocate_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_allocate_work.c -o Utility/cholmod_l_allocate_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_band.c -o Utility/cholmod_band.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_band.c -o Utility/cholmod_l_band.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_band_nnz.c -o Utility/cholmod_band_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_band_nnz.c -o Utility/cholmod_l_band_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_calloc.c -o Utility/cholmod_calloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_calloc.c -o Utility/cholmod_l_calloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_change_factor.c -o Utility/cholmod_change_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_change_factor.c -o Utility/cholmod_l_change_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_clear_flag.c -o Utility/cholmod_clear_flag.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_clear_flag.c -o Utility/cholmod_l_clear_flag.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_copy.c -o Utility/cholmod_copy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy.c -o Utility/cholmod_l_copy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_copy_dense.c -o Utility/cholmod_copy_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_dense.c -o Utility/cholmod_l_copy_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_copy_dense2.c -o Utility/cholmod_copy_dense2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_dense2.c -o Utility/cholmod_l_copy_dense2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_copy_factor.c -o Utility/cholmod_copy_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_factor.c -o Utility/cholmod_l_copy_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_copy_sparse.c -o Utility/cholmod_copy_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_sparse.c -o Utility/cholmod_l_copy_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_copy_triplet.c -o Utility/cholmod_copy_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_copy_triplet.c -o Utility/cholmod_l_copy_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_cumsum.c -o Utility/cholmod_cumsum.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_cumsum.c -o Utility/cholmod_l_cumsum.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_dbound.c -o Utility/cholmod_dbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_dbound.c -o Utility/cholmod_l_dbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_defaults.c -o Utility/cholmod_defaults.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_defaults.c -o Utility/cholmod_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_dense_nnz.c -o Utility/cholmod_dense_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_dense_nnz.c -o Utility/cholmod_l_dense_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_dense_to_sparse.c -o Utility/cholmod_dense_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_dense_to_sparse.c -o Utility/cholmod_l_dense_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_divcomplex.c -o Utility/cholmod_divcomplex.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_divcomplex.c -o Utility/cholmod_l_divcomplex.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_ensure_dense.c -o Utility/cholmod_ensure_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_ensure_dense.c -o Utility/cholmod_l_ensure_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_error.c -o Utility/cholmod_error.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_error.c -o Utility/cholmod_l_error.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_eye.c -o Utility/cholmod_eye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_eye.c -o Utility/cholmod_l_eye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_factor_to_sparse.c -o Utility/cholmod_factor_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_factor_to_sparse.c -o Utility/cholmod_l_factor_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_finish.c -o Utility/cholmod_finish.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_finish.c -o Utility/cholmod_l_finish.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_free.c -o Utility/cholmod_free.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_free.c -o Utility/cholmod_l_free.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_free_dense.c -o Utility/cholmod_free_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_dense.c -o Utility/cholmod_l_free_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_free_factor.c -o Utility/cholmod_free_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_factor.c -o Utility/cholmod_l_free_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_free_sparse.c -o Utility/cholmod_free_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_sparse.c -o Utility/cholmod_l_free_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_free_triplet.c -o Utility/cholmod_free_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_triplet.c -o Utility/cholmod_l_free_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_free_work.c -o Utility/cholmod_free_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_free_work.c -o Utility/cholmod_l_free_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_hypot.c -o Utility/cholmod_hypot.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_hypot.c -o Utility/cholmod_l_hypot.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_malloc.c -o Utility/cholmod_malloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_malloc.c -o Utility/cholmod_l_malloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_maxrank.c -o Utility/cholmod_maxrank.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_maxrank.c -o Utility/cholmod_l_maxrank.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_memdebug.c -o Utility/cholmod_memdebug.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_mult_size_t.c -o Utility/cholmod_mult_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_mult_size_t.c -o Utility/cholmod_l_mult_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_mult_uint64_t.c -o Utility/cholmod_mult_uint64_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_nnz.c -o Utility/cholmod_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_nnz.c -o Utility/cholmod_l_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_ones.c -o Utility/cholmod_ones.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_ones.c -o Utility/cholmod_l_ones.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_pack_factor.c -o Utility/cholmod_pack_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_pack_factor.c -o Utility/cholmod_l_pack_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_ptranspose.c -o Utility/cholmod_ptranspose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_ptranspose.c -o Utility/cholmod_l_ptranspose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_realloc.c -o Utility/cholmod_realloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_realloc.c -o Utility/cholmod_l_realloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_realloc_multiple.c -o Utility/cholmod_realloc_multiple.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_realloc_multiple.c -o Utility/cholmod_l_realloc_multiple.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_column.c -o Utility/cholmod_reallocate_column.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_column.c -o Utility/cholmod_l_reallocate_column.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_factor.c -o Utility/cholmod_reallocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_factor.c -o Utility/cholmod_l_reallocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_sparse.c -o Utility/cholmod_reallocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_sparse.c -o Utility/cholmod_l_reallocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_reallocate_triplet.c -o Utility/cholmod_reallocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_reallocate_triplet.c -o Utility/cholmod_l_reallocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_sbound.c -o Utility/cholmod_sbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_sbound.c -o Utility/cholmod_l_sbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_score_comp.c -o Utility/cholmod_score_comp.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_score_comp.c -o Utility/cholmod_l_score_comp.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_set_empty.c -o Utility/cholmod_set_empty.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_set_empty.c -o Utility/cholmod_l_set_empty.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_sort.c -o Utility/cholmod_sort.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_sort.c -o Utility/cholmod_l_sort.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_sparse_to_dense.c -o Utility/cholmod_sparse_to_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_sparse_to_dense.c -o Utility/cholmod_l_sparse_to_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_sparse_to_triplet.c -o Utility/cholmod_sparse_to_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_sparse_to_triplet.c -o Utility/cholmod_l_sparse_to_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_speye.c -o Utility/cholmod_speye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_speye.c -o Utility/cholmod_l_speye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_spzeros.c -o Utility/cholmod_spzeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_spzeros.c -o Utility/cholmod_l_spzeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_start.c -o Utility/cholmod_start.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_start.c -o Utility/cholmod_l_start.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_transpose.c -o Utility/cholmod_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_transpose.c -o Utility/cholmod_l_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_transpose_sym.c -o Utility/cholmod_transpose_sym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_transpose_sym.c -o Utility/cholmod_l_transpose_sym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_transpose_unsym.c -o Utility/cholmod_transpose_unsym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_transpose_unsym.c -o Utility/cholmod_l_transpose_unsym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_triplet_to_sparse.c -o Utility/cholmod_triplet_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_triplet_to_sparse.c -o Utility/cholmod_l_triplet_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_version.c -o Utility/cholmod_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_version.c -o Utility/cholmod_l_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_xtype.c -o Utility/cholmod_xtype.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_xtype.c -o Utility/cholmod_l_xtype.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_zeros.c -o Utility/cholmod_zeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Utility/cholmod_l_zeros.c -o Utility/cholmod_l_zeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_drop.c -o MatrixOps/cholmod_drop.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_drop.c -o MatrixOps/cholmod_l_drop.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_horzcat.c -o MatrixOps/cholmod_horzcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_horzcat.c -o MatrixOps/cholmod_l_horzcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_norm.c -o MatrixOps/cholmod_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_norm.c -o MatrixOps/cholmod_l_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_scale.c -o MatrixOps/cholmod_scale.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_scale.c -o MatrixOps/cholmod_l_scale.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_sdmult.c -o MatrixOps/cholmod_sdmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_sdmult.c -o MatrixOps/cholmod_l_sdmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_ssmult.c -o MatrixOps/cholmod_ssmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_ssmult.c -o MatrixOps/cholmod_l_ssmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_submatrix.c -o MatrixOps/cholmod_submatrix.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_submatrix.c -o MatrixOps/cholmod_l_submatrix.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_symmetry.c -o MatrixOps/cholmod_symmetry.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_symmetry.c -o MatrixOps/cholmod_l_symmetry.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_vertcat.c -o MatrixOps/cholmod_vertcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c MatrixOps/cholmod_l_vertcat.c -o MatrixOps/cholmod_l_vertcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Modify/cholmod_rowadd.c -o Modify/cholmod_rowadd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Modify/cholmod_l_rowadd.c -o Modify/cholmod_l_rowadd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Modify/cholmod_rowdel.c -o Modify/cholmod_rowdel.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Modify/cholmod_l_rowdel.c -o Modify/cholmod_l_rowdel.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Modify/cholmod_updown.c -o Modify/cholmod_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Modify/cholmod_l_updown.c -o Modify/cholmod_l_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_camd.c -o Partition/cholmod_camd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_l_camd.c -o Partition/cholmod_l_camd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_ccolamd.c -o Partition/cholmod_ccolamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_l_ccolamd.c -o Partition/cholmod_l_ccolamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_csymamd.c -o Partition/cholmod_csymamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_l_csymamd.c -o Partition/cholmod_l_csymamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_metis.c -o Partition/cholmod_metis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_l_metis.c -o Partition/cholmod_l_metis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_metis_wrapper.c -o Partition/cholmod_metis_wrapper.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_nesdis.c -o Partition/cholmod_nesdis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Partition/cholmod_l_nesdis.c -o Partition/cholmod_l_nesdis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Supernodal/cholmod_super_numeric.c -o Supernodal/cholmod_super_numeric.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Supernodal/cholmod_l_super_numeric.c -o Supernodal/cholmod_l_super_numeric.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Supernodal/cholmod_super_solve.c -o Supernodal/cholmod_super_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Supernodal/cholmod_l_super_solve.c -o Supernodal/cholmod_l_super_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Supernodal/cholmod_super_symbolic.c -o Supernodal/cholmod_super_symbolic.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Supernodal/cholmod_l_super_symbolic.c -o Supernodal/cholmod_l_super_symbolic.o rm -f CHOLMOD.a ar -cr CHOLMOD.a Check/cholmod_check.o Check/cholmod_l_check.o Check/cholmod_read.o Check/cholmod_l_read.o Check/cholmod_write.o Check/cholmod_l_write.o Cholesky/cholmod_amd.o Cholesky/cholmod_l_amd.o Cholesky/cholmod_analyze.o Cholesky/cholmod_l_analyze.o Cholesky/cholmod_colamd.o Cholesky/cholmod_l_colamd.o Cholesky/cholmod_etree.o Cholesky/cholmod_l_etree.o Cholesky/cholmod_factorize.o Cholesky/cholmod_l_factorize.o Cholesky/cholmod_postorder.o Cholesky/cholmod_l_postorder.o Cholesky/cholmod_rcond.o Cholesky/cholmod_l_rcond.o Cholesky/cholmod_resymbol.o Cholesky/cholmod_l_resymbol.o Cholesky/cholmod_rowcolcounts.o Cholesky/cholmod_l_rowcolcounts.o Cholesky/cholmod_rowfac.o Cholesky/cholmod_l_rowfac.o Cholesky/cholmod_solve.o Cholesky/cholmod_l_solve.o Cholesky/cholmod_spsolve.o Cholesky/cholmod_l_spsolve.o Utility/cholmod_aat.o Utility/cholmod_l_aat.o Utility/cholmod_add.o Utility/cholmod_l_add.o Utility/cholmod_add_size_t.o Utility/cholmod_l_add_size_t.o Utility/cholmod_alloc_factor.o Utility/cholmod_l_alloc_factor.o Utility/cholmod_alloc_work.o Utility/cholmod_l_alloc_work.o Utility/cholmod_allocate_dense.o Utility/cholmod_l_allocate_dense.o Utility/cholmod_allocate_factor.o Utility/cholmod_l_allocate_factor.o Utility/cholmod_allocate_sparse.o Utility/cholmod_l_allocate_sparse.o Utility/cholmod_allocate_triplet.o Utility/cholmod_l_allocate_triplet.o Utility/cholmod_allocate_work.o Utility/cholmod_l_allocate_work.o Utility/cholmod_band.o Utility/cholmod_l_band.o Utility/cholmod_band_nnz.o Utility/cholmod_l_band_nnz.o Utility/cholmod_calloc.o Utility/cholmod_l_calloc.o Utility/cholmod_change_factor.o Utility/cholmod_l_change_factor.o Utility/cholmod_clear_flag.o Utility/cholmod_l_clear_flag.o Utility/cholmod_copy.o Utility/cholmod_l_copy.o Utility/cholmod_copy_dense.o Utility/cholmod_l_copy_dense.o Utility/cholmod_copy_dense2.o Utility/cholmod_l_copy_dense2.o Utility/cholmod_copy_factor.o Utility/cholmod_l_copy_factor.o Utility/cholmod_copy_sparse.o Utility/cholmod_l_copy_sparse.o Utility/cholmod_copy_triplet.o Utility/cholmod_l_copy_triplet.o Utility/cholmod_cumsum.o Utility/cholmod_l_cumsum.o Utility/cholmod_dbound.o Utility/cholmod_l_dbound.o Utility/cholmod_defaults.o Utility/cholmod_l_defaults.o Utility/cholmod_dense_nnz.o Utility/cholmod_l_dense_nnz.o Utility/cholmod_dense_to_sparse.o Utility/cholmod_l_dense_to_sparse.o Utility/cholmod_divcomplex.o Utility/cholmod_l_divcomplex.o Utility/cholmod_ensure_dense.o Utility/cholmod_l_ensure_dense.o Utility/cholmod_error.o Utility/cholmod_l_error.o Utility/cholmod_eye.o Utility/cholmod_l_eye.o Utility/cholmod_factor_to_sparse.o Utility/cholmod_l_factor_to_sparse.o Utility/cholmod_finish.o Utility/cholmod_l_finish.o Utility/cholmod_free.o Utility/cholmod_l_free.o Utility/cholmod_free_dense.o Utility/cholmod_l_free_dense.o Utility/cholmod_free_factor.o Utility/cholmod_l_free_factor.o Utility/cholmod_free_sparse.o Utility/cholmod_l_free_sparse.o Utility/cholmod_free_triplet.o Utility/cholmod_l_free_triplet.o Utility/cholmod_free_work.o Utility/cholmod_l_free_work.o Utility/cholmod_hypot.o Utility/cholmod_l_hypot.o Utility/cholmod_malloc.o Utility/cholmod_l_malloc.o Utility/cholmod_maxrank.o Utility/cholmod_l_maxrank.o Utility/cholmod_memdebug.o Utility/cholmod_mult_size_t.o Utility/cholmod_l_mult_size_t.o Utility/cholmod_mult_uint64_t.o Utility/cholmod_nnz.o Utility/cholmod_l_nnz.o Utility/cholmod_ones.o Utility/cholmod_l_ones.o Utility/cholmod_pack_factor.o Utility/cholmod_l_pack_factor.o Utility/cholmod_ptranspose.o Utility/cholmod_l_ptranspose.o Utility/cholmod_realloc.o Utility/cholmod_l_realloc.o Utility/cholmod_realloc_multiple.o Utility/cholmod_l_realloc_multiple.o Utility/cholmod_reallocate_column.o Utility/cholmod_l_reallocate_column.o Utility/cholmod_reallocate_factor.o Utility/cholmod_l_reallocate_factor.o Utility/cholmod_reallocate_sparse.o Utility/cholmod_l_reallocate_sparse.o Utility/cholmod_reallocate_triplet.o Utility/cholmod_l_reallocate_triplet.o Utility/cholmod_sbound.o Utility/cholmod_l_sbound.o Utility/cholmod_score_comp.o Utility/cholmod_l_score_comp.o Utility/cholmod_set_empty.o Utility/cholmod_l_set_empty.o Utility/cholmod_sort.o Utility/cholmod_l_sort.o Utility/cholmod_sparse_to_dense.o Utility/cholmod_l_sparse_to_dense.o Utility/cholmod_sparse_to_triplet.o Utility/cholmod_l_sparse_to_triplet.o Utility/cholmod_speye.o Utility/cholmod_l_speye.o Utility/cholmod_spzeros.o Utility/cholmod_l_spzeros.o Utility/cholmod_start.o Utility/cholmod_l_start.o Utility/cholmod_transpose.o Utility/cholmod_l_transpose.o Utility/cholmod_transpose_sym.o Utility/cholmod_l_transpose_sym.o Utility/cholmod_transpose_unsym.o Utility/cholmod_l_transpose_unsym.o Utility/cholmod_triplet_to_sparse.o Utility/cholmod_l_triplet_to_sparse.o Utility/cholmod_version.o Utility/cholmod_l_version.o Utility/cholmod_xtype.o Utility/cholmod_l_xtype.o Utility/cholmod_zeros.o Utility/cholmod_l_zeros.o MatrixOps/cholmod_drop.o MatrixOps/cholmod_l_drop.o MatrixOps/cholmod_horzcat.o MatrixOps/cholmod_l_horzcat.o MatrixOps/cholmod_norm.o MatrixOps/cholmod_l_norm.o MatrixOps/cholmod_scale.o MatrixOps/cholmod_l_scale.o MatrixOps/cholmod_sdmult.o MatrixOps/cholmod_l_sdmult.o MatrixOps/cholmod_ssmult.o MatrixOps/cholmod_l_ssmult.o MatrixOps/cholmod_submatrix.o MatrixOps/cholmod_l_submatrix.o MatrixOps/cholmod_symmetry.o MatrixOps/cholmod_l_symmetry.o MatrixOps/cholmod_vertcat.o MatrixOps/cholmod_l_vertcat.o Modify/cholmod_rowadd.o Modify/cholmod_l_rowadd.o Modify/cholmod_rowdel.o Modify/cholmod_l_rowdel.o Modify/cholmod_updown.o Modify/cholmod_l_updown.o Partition/cholmod_camd.o Partition/cholmod_l_camd.o Partition/cholmod_ccolamd.o Partition/cholmod_l_ccolamd.o Partition/cholmod_csymamd.o Partition/cholmod_l_csymamd.o Partition/cholmod_metis.o Partition/cholmod_l_metis.o Partition/cholmod_metis_wrapper.o Partition/cholmod_nesdis.o Partition/cholmod_l_nesdis.o Supernodal/cholmod_super_numeric.o Supernodal/cholmod_l_super_numeric.o Supernodal/cholmod_super_solve.o Supernodal/cholmod_l_super_solve.o Supernodal/cholmod_super_symbolic.o Supernodal/cholmod_l_super_symbolic.o ranlib CHOLMOD.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CHOLMOD' cd SuiteSparse/CCOLAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CCOLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/ccolamd.c -o Source/ccolamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/ccolamd_l.c -o Source/ccolamd_l.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/ccolamd_version.c -o Source/ccolamd_version.o rm -f CCOLAMD.a ar -cr CCOLAMD.a Source/ccolamd.o Source/ccolamd_l.o Source/ccolamd_version.o ranlib CCOLAMD.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CCOLAMD' cd SuiteSparse/CAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_1.c -o Source/camd_1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l1.c -o Source/camd_l1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_2.c -o Source/camd_2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l2.c -o Source/camd_l2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_aat.c -o Source/camd_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_aat.c -o Source/camd_l_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_control.c -o Source/camd_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_control.c -o Source/camd_l_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_defaults.c -o Source/camd_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_defaults.c -o Source/camd_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_dump.c -o Source/camd_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_dump.c -o Source/camd_l_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_info.c -o Source/camd_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_info.c -o Source/camd_l_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_order.c -o Source/camd_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_order.c -o Source/camd_l_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_postorder.c -o Source/camd_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_postorder.c -o Source/camd_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_preprocess.c -o Source/camd_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_preprocess.c -o Source/camd_l_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_valid.c -o Source/camd_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_l_valid.c -o Source/camd_l_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/camd_version.c -o Source/camd_version.o rm -f CAMD.a ar -cr CAMD.a Source/camd_1.o Source/camd_l1.o Source/camd_2.o Source/camd_l2.o Source/camd_aat.o Source/camd_l_aat.o Source/camd_control.o Source/camd_l_control.o Source/camd_defaults.o Source/camd_l_defaults.o Source/camd_dump.o Source/camd_l_dump.o Source/camd_info.o Source/camd_l_info.o Source/camd_order.o Source/camd_l_order.o Source/camd_postorder.o Source/camd_l_postorder.o Source/camd_preprocess.o Source/camd_l_preprocess.o Source/camd_valid.o Source/camd_l_valid.o Source/camd_version.o ranlib CAMD.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CAMD' cd SuiteSparse/COLAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/COLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/colamd.c -o Source/colamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/colamd_l.c -o Source/colamd_l.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/colamd_version.c -o Source/colamd_version.o rm -f COLAMD.a ar -cr COLAMD.a Source/colamd.o Source/colamd_l.o Source/colamd_version.o ranlib COLAMD.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/COLAMD' cd SuiteSparse/AMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_1.c -o Source/amd_1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l1.c -o Source/amd_l1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_2.c -o Source/amd_2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l2.c -o Source/amd_l2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_aat.c -o Source/amd_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_aat.c -o Source/amd_l_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_control.c -o Source/amd_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_control.c -o Source/amd_l_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_defaults.c -o Source/amd_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_defaults.c -o Source/amd_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_dump.c -o Source/amd_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_dump.c -o Source/amd_l_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_info.c -o Source/amd_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_info.c -o Source/amd_l_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_order.c -o Source/amd_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_order.c -o Source/amd_l_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_post_tree.c -o Source/amd_post_tree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_post_tree.c -o Source/amd_l_post_tree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_postorder.c -o Source/amd_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_postorder.c -o Source/amd_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_preprocess.c -o Source/amd_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_preprocess.c -o Source/amd_l_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_valid.c -o Source/amd_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_l_valid.c -o Source/amd_l_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/amd_version.c -o Source/amd_version.o rm -f AMD.a ar -cr AMD.a Source/amd_1.o Source/amd_l1.o Source/amd_2.o Source/amd_l2.o Source/amd_aat.o Source/amd_l_aat.o Source/amd_control.o Source/amd_l_control.o Source/amd_defaults.o Source/amd_l_defaults.o Source/amd_dump.o Source/amd_l_dump.o Source/amd_info.o Source/amd_l_info.o Source/amd_order.o Source/amd_l_order.o Source/amd_post_tree.o Source/amd_l_post_tree.o Source/amd_postorder.o Source/amd_l_postorder.o Source/amd_preprocess.o Source/amd_l_preprocess.o Source/amd_valid.o Source/amd_l_valid.o Source/amd_version.o ranlib AMD.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/AMD' cd SuiteSparse/CXSparse && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_add.c -o Source/cs_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_add.c -o Source/cs_dl_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_add.c -o Source/cs_ci_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_add.c -o Source/cs_cl_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_amd.c -o Source/cs_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_amd.c -o Source/cs_dl_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_amd.c -o Source/cs_ci_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_amd.c -o Source/cs_cl_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_chol.c -o Source/cs_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_chol.c -o Source/cs_dl_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_chol.c -o Source/cs_ci_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_chol.c -o Source/cs_cl_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cholsol.c -o Source/cs_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_cholsol.c -o Source/cs_dl_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_cholsol.c -o Source/cs_ci_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_cholsol.c -o Source/cs_cl_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_compress.c -o Source/cs_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_compress.c -o Source/cs_dl_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_compress.c -o Source/cs_ci_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_compress.c -o Source/cs_cl_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_convert.c -o Source/cs_convert.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_counts.c -o Source/cs_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_counts.c -o Source/cs_dl_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_counts.c -o Source/cs_ci_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_counts.c -o Source/cs_cl_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cumsum.c -o Source/cs_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_cumsum.c -o Source/cs_dl_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_cumsum.c -o Source/cs_ci_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_cumsum.c -o Source/cs_cl_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dfs.c -o Source/cs_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_dfs.c -o Source/cs_dl_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_dfs.c -o Source/cs_ci_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_dfs.c -o Source/cs_cl_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dmperm.c -o Source/cs_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_dmperm.c -o Source/cs_dl_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_dmperm.c -o Source/cs_ci_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_dmperm.c -o Source/cs_cl_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_droptol.c -o Source/cs_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_droptol.c -o Source/cs_dl_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_droptol.c -o Source/cs_ci_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_droptol.c -o Source/cs_cl_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dropzeros.c -o Source/cs_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_dropzeros.c -o Source/cs_dl_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_dropzeros.c -o Source/cs_ci_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_dropzeros.c -o Source/cs_cl_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dupl.c -o Source/cs_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_dupl.c -o Source/cs_dl_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_dupl.c -o Source/cs_ci_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_dupl.c -o Source/cs_cl_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_entry.c -o Source/cs_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_entry.c -o Source/cs_dl_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_entry.c -o Source/cs_ci_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_entry.c -o Source/cs_cl_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ereach.c -o Source/cs_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_ereach.c -o Source/cs_dl_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_ereach.c -o Source/cs_ci_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_ereach.c -o Source/cs_cl_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_etree.c -o Source/cs_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_etree.c -o Source/cs_dl_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_etree.c -o Source/cs_ci_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_etree.c -o Source/cs_cl_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_fkeep.c -o Source/cs_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_fkeep.c -o Source/cs_dl_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_fkeep.c -o Source/cs_ci_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_fkeep.c -o Source/cs_cl_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_gaxpy.c -o Source/cs_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_gaxpy.c -o Source/cs_dl_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_gaxpy.c -o Source/cs_ci_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_gaxpy.c -o Source/cs_cl_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_happly.c -o Source/cs_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_happly.c -o Source/cs_dl_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_happly.c -o Source/cs_ci_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_happly.c -o Source/cs_cl_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_house.c -o Source/cs_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_house.c -o Source/cs_dl_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_house.c -o Source/cs_ci_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_house.c -o Source/cs_cl_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ipvec.c -o Source/cs_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_ipvec.c -o Source/cs_dl_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_ipvec.c -o Source/cs_ci_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_ipvec.c -o Source/cs_cl_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_leaf.c -o Source/cs_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_leaf.c -o Source/cs_dl_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_leaf.c -o Source/cs_ci_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_leaf.c -o Source/cs_cl_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_load.c -o Source/cs_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_load.c -o Source/cs_dl_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_load.c -o Source/cs_ci_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_load.c -o Source/cs_cl_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_lsolve.c -o Source/cs_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_lsolve.c -o Source/cs_dl_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_lsolve.c -o Source/cs_ci_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_lsolve.c -o Source/cs_cl_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ltsolve.c -o Source/cs_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_ltsolve.c -o Source/cs_dl_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_ltsolve.c -o Source/cs_ci_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_ltsolve.c -o Source/cs_cl_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_lu.c -o Source/cs_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_lu.c -o Source/cs_dl_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_lu.c -o Source/cs_ci_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_lu.c -o Source/cs_cl_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_lusol.c -o Source/cs_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_lusol.c -o Source/cs_dl_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_lusol.c -o Source/cs_ci_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_lusol.c -o Source/cs_cl_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_malloc.c -o Source/cs_malloc.o Source/cs_malloc.c: In function ‘cs_di_realloc’: Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free] 37 | return ((*ok) ? pnew : p) ; /* return original p if failure */ | ~~~~~~~~~~~~~~^~~~ Source/cs_malloc.c:35:12: note: call to ‘realloc’ here 35 | pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_malloc.c -o Source/cs_dl_malloc.o In file included from Source/cs_dl_malloc.c:9: Source/cs_malloc.c: In function ‘cs_dl_realloc’: Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free] 37 | return ((*ok) ? pnew : p) ; /* return original p if failure */ | ~~~~~~~~~~~~~~^~~~ Source/cs_malloc.c:35:12: note: call to ‘realloc’ here 35 | pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_malloc.c -o Source/cs_ci_malloc.o In file included from Source/cs_ci_malloc.c:9: Source/cs_malloc.c: In function ‘cs_ci_realloc’: Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free] 37 | return ((*ok) ? pnew : p) ; /* return original p if failure */ | ~~~~~~~~~~~~~~^~~~ Source/cs_malloc.c:35:12: note: call to ‘realloc’ here 35 | pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_malloc.c -o Source/cs_cl_malloc.o In file included from Source/cs_cl_malloc.c:10: Source/cs_malloc.c: In function ‘cs_cl_realloc’: Source/cs_malloc.c:37:26: warning: pointer ‘p_11(D)’ may be used after ‘realloc’ [-Wuse-after-free] 37 | return ((*ok) ? pnew : p) ; /* return original p if failure */ | ~~~~~~~~~~~~~~^~~~ Source/cs_malloc.c:35:12: note: call to ‘realloc’ here 35 | pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_maxtrans.c -o Source/cs_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_maxtrans.c -o Source/cs_dl_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_maxtrans.c -o Source/cs_ci_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_maxtrans.c -o Source/cs_cl_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_multiply.c -o Source/cs_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_multiply.c -o Source/cs_dl_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_multiply.c -o Source/cs_ci_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_multiply.c -o Source/cs_cl_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_norm.c -o Source/cs_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_norm.c -o Source/cs_dl_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_norm.c -o Source/cs_ci_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_norm.c -o Source/cs_cl_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_permute.c -o Source/cs_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_permute.c -o Source/cs_dl_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_permute.c -o Source/cs_ci_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_permute.c -o Source/cs_cl_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_pinv.c -o Source/cs_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_pinv.c -o Source/cs_dl_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_pinv.c -o Source/cs_ci_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_pinv.c -o Source/cs_cl_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_post.c -o Source/cs_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_post.c -o Source/cs_dl_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_post.c -o Source/cs_ci_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_post.c -o Source/cs_cl_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_print.c -o Source/cs_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_print.c -o Source/cs_dl_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_print.c -o Source/cs_ci_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_print.c -o Source/cs_cl_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_pvec.c -o Source/cs_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_pvec.c -o Source/cs_dl_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_pvec.c -o Source/cs_ci_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_pvec.c -o Source/cs_cl_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_qr.c -o Source/cs_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_qr.c -o Source/cs_dl_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_qr.c -o Source/cs_ci_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_qr.c -o Source/cs_cl_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_qrsol.c -o Source/cs_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_qrsol.c -o Source/cs_dl_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_qrsol.c -o Source/cs_ci_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_qrsol.c -o Source/cs_cl_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_randperm.c -o Source/cs_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_randperm.c -o Source/cs_dl_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_randperm.c -o Source/cs_ci_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_randperm.c -o Source/cs_cl_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_reach.c -o Source/cs_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_reach.c -o Source/cs_dl_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_reach.c -o Source/cs_ci_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_reach.c -o Source/cs_cl_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_scatter.c -o Source/cs_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_scatter.c -o Source/cs_dl_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_scatter.c -o Source/cs_ci_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_scatter.c -o Source/cs_cl_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_scc.c -o Source/cs_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_scc.c -o Source/cs_dl_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_scc.c -o Source/cs_ci_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_scc.c -o Source/cs_cl_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_schol.c -o Source/cs_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_schol.c -o Source/cs_dl_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_schol.c -o Source/cs_ci_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_schol.c -o Source/cs_cl_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_spsolve.c -o Source/cs_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_spsolve.c -o Source/cs_dl_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_spsolve.c -o Source/cs_ci_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_spsolve.c -o Source/cs_cl_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_sqr.c -o Source/cs_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_sqr.c -o Source/cs_dl_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_sqr.c -o Source/cs_ci_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_sqr.c -o Source/cs_cl_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_symperm.c -o Source/cs_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_symperm.c -o Source/cs_dl_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_symperm.c -o Source/cs_ci_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_symperm.c -o Source/cs_cl_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_tdfs.c -o Source/cs_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_tdfs.c -o Source/cs_dl_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_tdfs.c -o Source/cs_ci_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_tdfs.c -o Source/cs_cl_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_transpose.c -o Source/cs_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_transpose.c -o Source/cs_dl_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_transpose.c -o Source/cs_ci_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_transpose.c -o Source/cs_cl_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_updown.c -o Source/cs_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_updown.c -o Source/cs_dl_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_updown.c -o Source/cs_ci_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_updown.c -o Source/cs_cl_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_usolve.c -o Source/cs_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_usolve.c -o Source/cs_dl_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_usolve.c -o Source/cs_ci_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_usolve.c -o Source/cs_cl_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_util.c -o Source/cs_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_util.c -o Source/cs_dl_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_util.c -o Source/cs_ci_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_util.c -o Source/cs_cl_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_utsolve.c -o Source/cs_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_dl_utsolve.c -o Source/cs_dl_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_ci_utsolve.c -o Source/cs_ci_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cs_cl_utsolve.c -o Source/cs_cl_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c Source/cxsparse_version.c -o Source/cxsparse_version.o rm -f CXSparse.a ar -cr CXSparse.a Source/cs_add.o Source/cs_dl_add.o Source/cs_ci_add.o Source/cs_cl_add.o Source/cs_amd.o Source/cs_dl_amd.o Source/cs_ci_amd.o Source/cs_cl_amd.o Source/cs_chol.o Source/cs_dl_chol.o Source/cs_ci_chol.o Source/cs_cl_chol.o Source/cs_cholsol.o Source/cs_dl_cholsol.o Source/cs_ci_cholsol.o Source/cs_cl_cholsol.o Source/cs_compress.o Source/cs_dl_compress.o Source/cs_ci_compress.o Source/cs_cl_compress.o Source/cs_convert.o Source/cs_counts.o Source/cs_dl_counts.o Source/cs_ci_counts.o Source/cs_cl_counts.o Source/cs_cumsum.o Source/cs_dl_cumsum.o Source/cs_ci_cumsum.o Source/cs_cl_cumsum.o Source/cs_dfs.o Source/cs_dl_dfs.o Source/cs_ci_dfs.o Source/cs_cl_dfs.o Source/cs_dmperm.o Source/cs_dl_dmperm.o Source/cs_ci_dmperm.o Source/cs_cl_dmperm.o Source/cs_droptol.o Source/cs_dl_droptol.o Source/cs_ci_droptol.o Source/cs_cl_droptol.o Source/cs_dropzeros.o Source/cs_dl_dropzeros.o Source/cs_ci_dropzeros.o Source/cs_cl_dropzeros.o Source/cs_dupl.o Source/cs_dl_dupl.o Source/cs_ci_dupl.o Source/cs_cl_dupl.o Source/cs_entry.o Source/cs_dl_entry.o Source/cs_ci_entry.o Source/cs_cl_entry.o Source/cs_ereach.o Source/cs_dl_ereach.o Source/cs_ci_ereach.o Source/cs_cl_ereach.o Source/cs_etree.o Source/cs_dl_etree.o Source/cs_ci_etree.o Source/cs_cl_etree.o Source/cs_fkeep.o Source/cs_dl_fkeep.o Source/cs_ci_fkeep.o Source/cs_cl_fkeep.o Source/cs_gaxpy.o Source/cs_dl_gaxpy.o Source/cs_ci_gaxpy.o Source/cs_cl_gaxpy.o Source/cs_happly.o Source/cs_dl_happly.o Source/cs_ci_happly.o Source/cs_cl_happly.o Source/cs_house.o Source/cs_dl_house.o Source/cs_ci_house.o Source/cs_cl_house.o Source/cs_ipvec.o Source/cs_dl_ipvec.o Source/cs_ci_ipvec.o Source/cs_cl_ipvec.o Source/cs_leaf.o Source/cs_dl_leaf.o Source/cs_ci_leaf.o Source/cs_cl_leaf.o Source/cs_load.o Source/cs_dl_load.o Source/cs_ci_load.o Source/cs_cl_load.o Source/cs_lsolve.o Source/cs_dl_lsolve.o Source/cs_ci_lsolve.o Source/cs_cl_lsolve.o Source/cs_ltsolve.o Source/cs_dl_ltsolve.o Source/cs_ci_ltsolve.o Source/cs_cl_ltsolve.o Source/cs_lu.o Source/cs_dl_lu.o Source/cs_ci_lu.o Source/cs_cl_lu.o Source/cs_lusol.o Source/cs_dl_lusol.o Source/cs_ci_lusol.o Source/cs_cl_lusol.o Source/cs_malloc.o Source/cs_dl_malloc.o Source/cs_ci_malloc.o Source/cs_cl_malloc.o Source/cs_maxtrans.o Source/cs_dl_maxtrans.o Source/cs_ci_maxtrans.o Source/cs_cl_maxtrans.o Source/cs_multiply.o Source/cs_dl_multiply.o Source/cs_ci_multiply.o Source/cs_cl_multiply.o Source/cs_norm.o Source/cs_dl_norm.o Source/cs_ci_norm.o Source/cs_cl_norm.o Source/cs_permute.o Source/cs_dl_permute.o Source/cs_ci_permute.o Source/cs_cl_permute.o Source/cs_pinv.o Source/cs_dl_pinv.o Source/cs_ci_pinv.o Source/cs_cl_pinv.o Source/cs_post.o Source/cs_dl_post.o Source/cs_ci_post.o Source/cs_cl_post.o Source/cs_print.o Source/cs_dl_print.o Source/cs_ci_print.o Source/cs_cl_print.o Source/cs_pvec.o Source/cs_dl_pvec.o Source/cs_ci_pvec.o Source/cs_cl_pvec.o Source/cs_qr.o Source/cs_dl_qr.o Source/cs_ci_qr.o Source/cs_cl_qr.o Source/cs_qrsol.o Source/cs_dl_qrsol.o Source/cs_ci_qrsol.o Source/cs_cl_qrsol.o Source/cs_randperm.o Source/cs_dl_randperm.o Source/cs_ci_randperm.o Source/cs_cl_randperm.o Source/cs_reach.o Source/cs_dl_reach.o Source/cs_ci_reach.o Source/cs_cl_reach.o Source/cs_scatter.o Source/cs_dl_scatter.o Source/cs_ci_scatter.o Source/cs_cl_scatter.o Source/cs_scc.o Source/cs_dl_scc.o Source/cs_ci_scc.o Source/cs_cl_scc.o Source/cs_schol.o Source/cs_dl_schol.o Source/cs_ci_schol.o Source/cs_cl_schol.o Source/cs_spsolve.o Source/cs_dl_spsolve.o Source/cs_ci_spsolve.o Source/cs_cl_spsolve.o Source/cs_sqr.o Source/cs_dl_sqr.o Source/cs_ci_sqr.o Source/cs_cl_sqr.o Source/cs_symperm.o Source/cs_dl_symperm.o Source/cs_ci_symperm.o Source/cs_cl_symperm.o Source/cs_tdfs.o Source/cs_dl_tdfs.o Source/cs_ci_tdfs.o Source/cs_cl_tdfs.o Source/cs_transpose.o Source/cs_dl_transpose.o Source/cs_ci_transpose.o Source/cs_cl_transpose.o Source/cs_updown.o Source/cs_dl_updown.o Source/cs_ci_updown.o Source/cs_cl_updown.o Source/cs_usolve.o Source/cs_dl_usolve.o Source/cs_ci_usolve.o Source/cs_cl_usolve.o Source/cs_util.o Source/cs_dl_util.o Source/cs_ci_util.o Source/cs_cl_util.o Source/cs_utsolve.o Source/cs_dl_utsolve.o Source/cs_ci_utsolve.o Source/cs_cl_utsolve.o Source/cxsparse_version.o ranlib CXSparse.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/CXSparse' cd SuiteSparse/SuiteSparse_config && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/SuiteSparse_config' gcc -I/usr/local/include -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -c SuiteSparse_config.c -o SuiteSparse_config.o rm -f SuiteSparse_config.a ar -cr SuiteSparse_config.a SuiteSparse_config.o ranlib SuiteSparse_config.a make[4]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src/SuiteSparse/SuiteSparse_config' gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Matrix.so Csparse.o attrib.o bind.o cholmod-common.o cholmod-etc.o coerce.o cs-etc.o dense.o determinant.o expm.o factor.o idz.o init.o kappa.o matmult.o objects.o perm.o solve.o sparse.o subassign.o subscript.o utils-R.o utils.o validity.o vector.o SuiteSparse/CHOLMOD/CHOLMOD.a SuiteSparse/CCOLAMD/CCOLAMD.a SuiteSparse/CAMD/CAMD.a SuiteSparse/COLAMD/COLAMD.a SuiteSparse/AMD/AMD.a SuiteSparse/CXSparse/CXSparse.a SuiteSparse/SuiteSparse_config/SuiteSparse_config.a -lflexiblas -lgfortran -lm -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/Rtmp0j8SMC/R.INSTALL4539432cd28e/Matrix/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘zapsmall’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘drop’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csc","RsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.coo","RsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","sparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","sparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","sparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"Matrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"Matrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"Matrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"graphAM","TsparseMatrix"’: no definition for class “graphAM” in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","RsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","TsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","sparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","Matrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"Matrix","graphNEL"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"Matrix","graph"’: no definition for class “graph” Creating a generic function for ‘colSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘unname’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rcond’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘rcond’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘qr.Q’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.X’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.coef’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.fitted’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.resid’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘toeplitz’ from ‘stats’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘toeplitz’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘which’ from package ‘base’ in package ‘Matrix’ ** help *** installing help indices converting help for package ‘Matrix’ finding HTML links ... done BunchKaufman-class html BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky-methods html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html Matrix-class html Matrix-defunct html Matrix-deprecated html Matrix-notyet html Matrix html MatrixClass html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur-methods html TsparseMatrix-class html USCounties html abIndex-class html abIseq html all.equal-methods html asUniqueT html band-methods html bandSparse html bdiag html boolmatmult-methods html cbind2-methods html chol-methods html chol2inv-methods html coerce-methods-SparseM html coerce-methods-graph html colSums-methods html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseLU-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dimScale html dmperm html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-sparse html dtpMatrix-class html dtrMatrix-class-dense html expand-methods html expm-methods html externalFormats html facmul-methods html fastMisc html forceSymmetric-methods html formatSparseM html generalMatrix-class html image-methods html indMatrix-class html index-class html invertPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular-methods html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-class html lsyMatrix-class html ltrMatrix-class html lu-methods html mat2triplet html matmult-methods html nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero-methods html norm-methods html nsparseMatrix-class html nsyMatrix-class html ntrMatrix-class html pMatrix-class html pack-methods html packedMatrix-class html printSpMatrix html qr-methods html rankMatrix html rcond-methods html rep2abI html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html subassign-methods html subscript-methods html symmetricMatrix-class html symmpart-methods html triangularMatrix-class html unpackedMatrix-class html updown-methods html wrld_1deg html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) Making 'packages.html' ... done begin installing recommended package nlme * installing *source* package ‘nlme’ ... ** package ‘nlme’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/Rtmp2R9biG/R.INSTALL4bfc7705b95d/nlme/src' gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c chol.f -o chol.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c corStruct.c -o corStruct.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gnls.c -o gnls.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nlOptimizer.c -o nlOptimizer.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nlme.c -o nlme.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nlmefit.c -o nlmefit.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pdMat.c -o pdMat.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pythag.c -o pythag.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c rs.f -o rs.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/Rtmp2R9biG/R.INSTALL4bfc7705b95d/nlme/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘nlme’ finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme-deprecated html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varConstProp html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded * DONE (nlme) Making 'packages.html' ... done begin installing recommended package survival * installing *source* package ‘survival’ ... ** package ‘survival’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/Rtmpvo4zuW/R.INSTALL4c5356d16a66/survival/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agexact.c -o agexact.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agfit4.c -o agfit4.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agfit5.c -o agfit5.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agmart.c -o agmart.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agmart3.c -o agmart3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agscore2.c -o agscore2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agscore3.c -o agscore3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agsurv4.c -o agsurv4.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c agsurv5.c -o agsurv5.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cdecomp.c -o cdecomp.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chinv2.c -o chinv2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chinv3.c -o chinv3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cholesky2.c -o cholesky2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cholesky3.c -o cholesky3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cholesky5.c -o cholesky5.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chsolve2.c -o chsolve2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chsolve3.c -o chsolve3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chsolve5.c -o chsolve5.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c collapse.c -o collapse.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c concordance1.c -o concordance1.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c concordance3.c -o concordance3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c concordance5.c -o concordance5.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cox_Rcallback.c -o cox_Rcallback.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxcount1.c -o coxcount1.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxdetail.c -o coxdetail.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxexact.c -o coxexact.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxfit5.c -o coxfit5.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxfit6.c -o coxfit6.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxmart.c -o coxmart.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxmart2.c -o coxmart2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxph_wtest.c -o coxph_wtest.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxsafe.c -o coxsafe.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxscho.c -o coxscho.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxscore2.c -o coxscore2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxsurv1.c -o coxsurv1.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxsurv2.c -o coxsurv2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxsurv3.c -o coxsurv3.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxsurv4.c -o coxsurv4.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dmatrix.c -o dmatrix.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c doloop.c -o doloop.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fastkm.c -o fastkm.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c finegray.c -o finegray.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gchol.c -o gchol.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c multicheck.c -o multicheck.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c norisk.c -o norisk.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pyears1.c -o pyears1.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pyears2.c -o pyears2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pyears3b.c -o pyears3b.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pystep.c -o pystep.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c residcsum.c -o residcsum.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survConcordance.c -o survConcordance.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survdiff2.c -o survdiff2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survfit4.c -o survfit4.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survfitaj.c -o survfitaj.o survfitaj.c: In function ‘survfitaj’: survfitaj.c:289:23: warning: ‘nenter’ may be used uninitialized [-Wmaybe-uninitialized] 289 | nenter[j+nstate][i]++; | ^ survfitaj.c:95:44: note: ‘nenter’ was declared here 95 | double **nrisk, **nevent, **ncensor, **nenter, **ntrans; | ^~~~~~ survfitaj.c:510:21: warning: ‘stdp’ may be used uninitialized [-Wmaybe-uninitialized] 510 | stdp[j][i] = se1[j]; | ~~~~^~~ survfitaj.c:96:14: note: ‘stdp’ was declared here 96 | double **stdp, **stdc, **stda; | ^~~~ survfitaj.c:517:32: warning: ‘stdc’ may be used uninitialized [-Wmaybe-uninitialized] 517 | if (sefit > 0) stdc[jk][i] = se2[jk]; | ~~~~^~~~ survfitaj.c:96:23: note: ‘stdc’ was declared here 96 | double **stdp, **stdc, **stda; | ^~~~ survfitaj.c:511:21: warning: ‘stda’ may be used uninitialized [-Wmaybe-uninitialized] 511 | stda[j][i] = se3[j]; | ~~~~^~~ survfitaj.c:96:31: note: ‘stda’ was declared here 96 | double **stdp, **stdc, **stda; | ^~~~ gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survfitkm.c -o survfitkm.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survfitresid.c -o survfitresid.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survpenal.c -o survpenal.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survreg6.c -o survreg6.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survreg7.c -o survreg7.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survregc1.c -o survregc1.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survregc2.c -o survregc2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c survsplit.c -o survsplit.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tmerge.c -o tmerge.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c twoclust.c -o twoclust.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c zph1.c -o zph1.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c zph2.c -o zph2.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/Rtmpvo4zuW/R.INSTALL4c5356d16a66/survival/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘survival’ finding HTML links ... done Surv html Surv2 html Surv2data html Survmethods html aareg html aeqSurv html aggregate.survfit html agreg.fit html aml html anova.coxph html attrassign html basehaz html bladder html blogit html brier html cch html cgd html cgd0 html cipoisson html clogit html cluster html colon html concordance html concordancefit html cox.zph html coxph html coxph.control html coxph.detail html coxph.object html coxph.wtest html coxphms.object html coxsurv.fit html diabetic html dsurvreg html finegray html flchain html frailty html gbsg html heart html hoel html is.ratetable html kidney html levels.Surv html lines.survfit html logLik.coxph html logan html lung html mgus html mgus2 html model.frame.coxph html model.matrix.coxph html myeloid html myeloma html nafld html neardate html nsk html nwtco html ovarian html pbc html pbcseq html plot.aareg html plot.cox.zph html plot.survfit html predict.coxph html predict.survreg html print.aareg html print.summary.coxph html print.summary.survexp html print.summary.survfit html print.survfit html pseudo html pspline html pyears html quantile.survfit html ratetable html ratetableDate html rats html rats2 html reliability html residuals.coxph html residuals.survfit html residuals.survreg html retinopathy html rhDNase html ridge html rotterdam html royston html rttright html solder html stanford2 html statefig html strata html summary.aareg html summary.coxph html summary.pyears html summary.survexp html summary.survfit html survSplit html survcheck html survcondense html survdiff html survexp html survexp.fit html survexp.object html survexp.us html survfit html survfit.coxph html survfit.formula html survfit.matrix html survfit.object html survfit0 html survfitcoxph.fit html survival-deprecated html survival-internal html survobrien html survreg html survreg.control html survreg.distributions html survreg.object html survregDtest html tcut html tmerge html tobin html transplant html udca html untangle.specials html uspop2 html vcov.coxph html veteran html xtfrm.Surv html yates html yates_setup html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) Making 'packages.html' ... done begin installing recommended package boot * installing *source* package ‘boot’ ... ** package ‘boot’ successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘boot’ finding HTML links ... done EEF.profile html Imp.Estimates html abc.ci html acme html aids html aircondit html amis html aml html beaver html bigcity html boot-practicals html boot html boot.array html boot.ci html brambles html breslow html calcium html cane html capability html catsM html cav html cd4 html cd4.nested html censboot html channing html claridge html cloth html co.transfer html coal html control html corr html cum3 html cv.glm html darwin html dogs html downs.bc html ducks html empinf html envelope html exp.tilt html fir html freq.array html frets html glm.diag html glm.diag.plots html gravity html hirose html imp.weights html inv.logit html islay html jack.after.boot html k3.linear html linear.approx html lines.saddle.distn html logit html manaus html melanoma html motor html neuro html nitrofen html nodal html norm.ci html nuclear html paulsen html plot.boot html poisons html polar html print.boot html print.bootci html print.saddle.distn html print.simplex html remission html saddle html saddle.distn html saddle.distn.object html salinity html simplex html simplex.object html smooth.f html sunspot html survival html tau html tilt.boot html tsboot html tuna html urine html var.linear html wool html ** building package indices ** testing if installed package can be loaded * DONE (boot) Making 'packages.html' ... done begin installing recommended package cluster * installing *source* package ‘cluster’ ... ** package ‘cluster’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpwR9clY/R.INSTALL4d7e705b7932/cluster/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clara.c -o clara.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c daisy.f -o daisy.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dysta.f -o dysta.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fanny.c -o fanny.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mona.c -o mona.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pam.c -o pam.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sildist.c -o sildist.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spannel.c -o spannel.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c twins.c -o twins.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpwR9clY/R.INSTALL4d7e705b7932/cluster/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘cluster’ finding HTML links ... done agnes html agnes.object html agriculture html animals html bannerplot html chorSub html clara html clara.object html clusGap html clusplot.default html clusplot.partition html cluster-internal html coef.hclust html daisy html diana html dissimilarity.object html ellipsoidhull html fanny html fanny.object html flower html lower.to.upper.tri.inds html medoids html mona html mona.object html pam html pam.object html partition.object html plantTraits html plot.agnes html plot.diana html plot.mona html plot.partition html pltree html pluton html predict.ellipsoid html print.agnes html print.clara html print.diana html print.dissimilarity html print.fanny html print.mona html print.pam html ruspini html silhouette html sizeDiss html summary.agnes html summary.clara html summary.diana html summary.mona html summary.pam html twins.object html volume.ellipsoid html votes.repub html xclara html ** building package indices ** testing if installed package can be loaded * DONE (cluster) Making 'packages.html' ... done begin installing recommended package codetools * installing *source* package ‘codetools’ ... ** package ‘codetools’ successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘codetools’ finding HTML links ... done checkUsage html codetools html findGlobals html showTree html ** building package indices ** testing if installed package can be loaded * DONE (codetools) Making 'packages.html' ... done begin installing recommended package foreign * installing *source* package ‘foreign’ ... ** package ‘foreign’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpvG3wHf/R.INSTALL4df369083f39/foreign/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_systat.c -o R_systat.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Rdbfread.c -o Rdbfread.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Rdbfwrite.c -o Rdbfwrite.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c SASxport.c -o SASxport.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c avl.c -o avl.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbfopen.c -o dbfopen.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c file-handle.c -o file-handle.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c format.c -o format.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c minitab.c -o minitab.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pfm-read.c -o pfm-read.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfm-read.c -o sfm-read.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spss.c -o spss.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stataread.c -o stataread.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpvG3wHf/R.INSTALL4df369083f39/foreign/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘foreign’ finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded * DONE (foreign) Making 'packages.html' ... done begin installing recommended package KernSmooth * installing *source* package ‘KernSmooth’ ... ** package ‘KernSmooth’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/Rtmp0TF2qD/R.INSTALL4e5856b2e810/KernSmooth/src' gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c blkest.f -o blkest.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c cp.f -o cp.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dgedi.f -o dgedi.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dgefa.f -o dgefa.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c dgesl.f -o dgesl.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c linbin.f -o linbin.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c linbin2D.f -o linbin2D.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c locpoly.f -o locpoly.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c rlbin.f -o rlbin.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c sdiag.f -o sdiag.o gfortran -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules -c sstdiag.f -o sstdiag.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/Rtmp0TF2qD/R.INSTALL4e5856b2e810/KernSmooth/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘KernSmooth’ finding HTML links ... done bkde html bkde2D html bkfe html dpih html dpik html dpill html locpoly html ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) Making 'packages.html' ... done begin installing recommended package rpart * installing *source* package ‘rpart’ ... ** package ‘rpart’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpYZXFXx/R.INSTALL4eb246426a9/rpart/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c anova.c -o anova.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c anovapred.c -o anovapred.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c branch.c -o branch.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bsplit.c -o bsplit.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c choose_surg.c -o choose_surg.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fix_cp.c -o fix_cp.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c free_tree.c -o free_tree.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gini.c -o gini.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c graycode.c -o graycode.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c insert_split.c -o insert_split.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c make_cp_list.c -o make_cp_list.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c make_cp_table.c -o make_cp_table.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mysort.c -o mysort.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nodesplit.c -o nodesplit.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c partition.c -o partition.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c poisson.c -o poisson.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pred_rpart.c -o pred_rpart.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c print_tree.c -o print_tree.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpart.c -o rpart.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpart_callback.c -o rpart_callback.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpartexp.c -o rpartexp.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpartexp2.c -o rpartexp2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpcountup.c -o rpcountup.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpmatrix.c -o rpmatrix.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rundown.c -o rundown.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rundown2.c -o rundown2.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c surrogate.c -o surrogate.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c usersplit.c -o usersplit.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c xpred.c -o xpred.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c xval.c -o xval.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpYZXFXx/R.INSTALL4eb246426a9/rpart/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘rpart’ finding HTML links ... done car.test.frame html car90 html cu.summary html kyphosis html labels.rpart html meanvar.rpart html na.rpart html path.rpart html plot.rpart html plotcp html post.rpart html predict.rpart html print.rpart html printcp html prune.rpart html residuals.rpart html rpart-internal html rpart html rpart.control html rpart.exp html rpart.object html rsq.rpart html snip.rpart html solder.balance html stagec html summary.rpart html text.rpart html xpred.rpart html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) Making 'packages.html' ... done begin installing recommended package class * installing *source* package ‘class’ ... ** package ‘class’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpjqmFOo/R.INSTALL4f4451ecd72a/class/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c class.c -o class.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o class.so class.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpjqmFOo/R.INSTALL4f4451ecd72a/class/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘class’ finding HTML links ... done SOM html batchSOM html condense html knn html knn.cv html knn1 html lvq1 html lvq2 html lvq3 html lvqinit html lvqtest html multiedit html olvq1 html reduce.nn html somgrid html ** building package indices ** testing if installed package can be loaded * DONE (class) Making 'packages.html' ... done begin installing recommended package nnet * installing *source* package ‘nnet’ ... ** package ‘nnet’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpXayYfe/R.INSTALL4f7c501fa3b8/nnet/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nnet.c -o nnet.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nnet.so nnet.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpXayYfe/R.INSTALL4f7c501fa3b8/nnet/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘nnet’ finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded * DONE (nnet) Making 'packages.html' ... done begin installing recommended package spatial * installing *source* package ‘spatial’ ... ** package ‘spatial’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpDvoMk3/R.INSTALL4fb4607a4923/spatial/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c krc.c -o krc.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pps.c -o pps.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpDvoMk3/R.INSTALL4fb4607a4923/spatial/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘spatial’ finding HTML links ... done Kaver html Kenvl html Kfn html Psim html SSI html Strauss html anova.trls html correlogram html expcov html ppgetregion html ppinit html pplik html ppregion html predict.trls html prmat html semat html surf.gls html surf.ls html trls.influence html trmat html variogram html ** building package indices ** testing if installed package can be loaded * DONE (spatial) Making 'packages.html' ... done begin installing recommended package mgcv * installing *source* package ‘mgcv’ ... ** package ‘mgcv’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[3]: Entering directory '/tmp/RtmpgTg6HR/R.INSTALL4ff2631d7941/mgcv/src' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c coxph.c -o coxph.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c davies.c -o davies.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c discrete.c -o discrete.o discrete.c: In function ‘CXWyd’: discrete.c:700:62: warning: unused variable ‘nrs’ [-Wunused-variable] 700 | int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy; | ^~~ discrete.c:700:49: warning: unused variable ‘rs’ [-Wunused-variable] 700 | int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy; | ^~ discrete.c:700:35: warning: unused variable ‘nthreads’ [-Wunused-variable] 700 | int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy; | ^~~~~~~~ gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gdi.c -o gdi.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c magic.c -o magic.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mat.c -o mat.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mgcv.c -o mgcv.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c misc.c -o misc.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mvn.c -o mvn.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ncv.c -o ncv.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qp.c -o qp.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c soap.c -o soap.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sparse-smooth.c -o sparse-smooth.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sparse.c -o sparse.o gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tprs.c -o tprs.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lgfortran -lm -fopenmp -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[3]: Leaving directory '/tmp/RtmpgTg6HR/R.INSTALL4ff2631d7941/mgcv/src' installing to /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘mgcv’ finding HTML links ... done Beta html FFdes html NCV html Predict.matrix html Predict.matrix.cr.smooth html Predict.matrix.soap.film html Rrank html Sl.initial.repara html Sl.repara html Sl.setup html Tweedie html XWXd html anova.gam html bam html bam.update html bandchol html blas.thread.test html bug.reports.mgcv html cSplineDes html chol.down html choose.k html cnorm html columb html concurvity html coxph html coxpht html dDeta html dpnorm html exclude.too.far html extract.lme.cov html factor.smooth html family.mgcv html fix.family.link html fixDependence html formXtViX html formula.gam html fs.test html full.score html gam html gam.check html gam.control html gam.convergence html gam.fit html gam.fit3 html gam.fit5.post.proc html gam.mh html gam.models html gam.outer html gam.reparam html gam.scale html gam.selection html gam.side html gam.vcomp html gam2objective html gamObject html gamSim html gamlss.etamu html gamlss.gH html gamm html gammals html gaulss html get.var html gevlss html gfam html ginla html gumbls html identifiability html in.out html inSide html influence.gam html initial.sp html interpret.gam html jagam html k.check html ldTweedie html ldetS html linear.functional.terms html logLik.gam html ls.size html magic html magic.post.proc html mgcv-FAQ html mgcv-package html mgcv-parallel html mini.roots html missing.data html model.matrix.gam html mono.con html mroot html multinom html mvn html negbin html new.name html notExp html notExp2 html null.space.dimension html ocat html one.se.rule html pcls html pdIdnot html pdTens html pen.edf html place.knots html plot.gam html polys.plot html predict.bam html predict.gam html print.gam html psum.chisq html qq.gam html rTweedie html random.effects html residuals.gam html rig html rmvn html s html scat html sdiag html shash html single.index html slanczos html smooth.construct html smooth.construct.ad.smooth.spec html smooth.construct.bs.smooth.spec html smooth.construct.cr.smooth.spec html smooth.construct.ds.smooth.spec html smooth.construct.fs.smooth.spec html smooth.construct.gp.smooth.spec html smooth.construct.mrf.smooth.spec html smooth.construct.ps.smooth.spec html smooth.construct.re.smooth.spec html smooth.construct.so.smooth.spec html smooth.construct.sos.smooth.spec html smooth.construct.sz.smooth.spec html smooth.construct.t2.smooth.spec html smooth.construct.tensor.smooth.spec html smooth.construct.tp.smooth.spec html smooth.info html smooth.terms html smooth2random html smoothCon html sp.vcov html spasm.construct html step.gam html summary.gam html t2 html te html tensor.prod.model.matrix html totalPenaltySpace html trichol html trind.generator html twlss html uniquecombs html vcov.gam html vis.gam html ziP html ziplss html ** building package indices ** testing if installed package can be loaded * DONE (mgcv) Making 'packages.html' ... done make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/Recommended' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library/Recommended' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... building/updating vignettes for package 'stats' ... processing 'reshape.Rnw' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1' configuring Java ... Java interpreter : /usr/bin/java Java version : 21.0.4 Java home path : /usr/lib/jvm/jre Java compiler : /usr/bin/javac Java headers gen.: Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[2]: Entering directory '/tmp/Rjavareconf.inCcUB' gcc -I"/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/include" -DNDEBUG -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c conftest.c -o conftest.o gcc -shared -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o conftest.so conftest.o -L/usr/lib/jvm/jre/lib/server -ljvm -L/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/lib -lR make[2]: Leaving directory '/tmp/Rjavareconf.inCcUB' JAVA_HOME : /usr/lib/jvm/jre Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /builddir/build/BUILD/R-4.4.1-build/R-4.4.1 Done. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1' + cd src/nmath/standalone + make (cd ../../include; make Rmath.h) make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' Copying source files make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbinom_mu.c -o qnbinom_mu.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath/standalone' + make pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ............................................ collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ................ collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX .......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'MASS' ... Converting parsed Rd's to LaTeX ............... collecting LaTeX docs for package 'lattice' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'Matrix' ... Converting parsed Rd's to LaTeX ............ collecting LaTeX docs for package 'nlme' ... Converting parsed Rd's to LaTeX ............................ collecting LaTeX docs for package 'survival' ... Converting parsed Rd's to LaTeX ............. collecting LaTeX docs for package 'boot' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'cluster' ... Converting parsed Rd's to LaTeX ..... collecting LaTeX docs for package 'codetools' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'foreign' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'KernSmooth' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'rpart' ... Converting parsed Rd's to LaTeX .. collecting LaTeX docs for package 'class' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'nnet' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'spatial' ... Converting parsed Rd's to LaTeX .. collecting LaTeX docs for package 'mgcv' ... Converting parsed Rd's to LaTeX ............... PDF/LaTeX documentation: full reference index ... 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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [3{/usr/share/texli ve/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}] [4] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . 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This reads the Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [113] [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [124] [125] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [211] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [212] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [213] [214] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [215] Underfull \vbox (badness 1418) has occurred while \output is active [216] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [217] [218] [219] [220] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [229] [230] [231] [232] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [233] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [234] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [245] [246] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [247] [248] [249] [250] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [251] [252] [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] Underfull \vbox (badness 10000) has occurred while \output is active [261] Underfull \vbox (badness 10000) has occurred while \output is active [262] [263] [264] [265] [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [285] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [292] [293] [294] [295] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [313] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , [314] Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [315] [316] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [329] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [366] [367] [368] [369] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [370] [371] [372] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [379] [380] [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [388] [389] [390] [391] [392] [393] [394] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [395] [396] [397] [398] [399] [400] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [401] Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [402] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [403] Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [407] Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [413] [414] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [415] [416] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \vbox (badness 10000) has occurred while \output is active [449] [450] [451] [452] [453] [454] [455] [456] Underfull \hbox (badness 1533) in paragraph at lines 31986--31989 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [457] [458] [459] Underfull \hbox (badness 1163) in paragraph at lines 32157--32168 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [460] [461] [462] [463] [464] [465] [466] [467] Underfull \hbox (badness 6300) in paragraph at lines 32703--32705 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] Underfull \hbox (badness 10000) in paragraph at lines 33826--33830 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33826--33830 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33847--33849 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33850--33854 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [484] [485] [486] [487] [488] [489] [490] [491] [492] Underfull \hbox (badness 1655) in paragraph at lines 34452--34454 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 2261) in paragraph at lines 35655--35660 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] Underfull \hbox (badness 3668) in paragraph at lines 36690--36694 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [525] Underfull \hbox (badness 10000) in paragraph at lines 36781--36792 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 38413--38415 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [550] [551] [552] [553] [554] Underfull \hbox (badness 2913) in paragraph at lines 38831--38835 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [555] [556] [557] [558] Underfull \hbox (badness 1072) in paragraph at lines 39077--39081 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39082--39086 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39122--39128 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39122--39128 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39122--39128 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39137--39144 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [559] [560] [561] [562] Underfull \hbox (badness 2644) in paragraph at lines 39372--39376 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 1158) in paragraph at lines 40900--40902 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \hbox (badness 1137) in paragraph at lines 41500--41506 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41518--41523 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [594] [595] Underfull \hbox (badness 1616) in paragraph at lines 41638--41643 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1472) in paragraph at lines 42184--42187 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [604] [605] [606] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42396. [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] Underfull \vbox (badness 10000) has occurred while \output is active [617] Underfull \hbox (badness 10000) in paragraph at lines 43135--43139 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [618] [619] [620] [621] [622] Underfull \hbox (badness 10000) in paragraph at lines 43494--43497 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [623] [624] [625] Underfull \hbox (badness 10000) in paragraph at lines 43678--43682 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [626] [627] [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 44326--44329 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] Underfull \hbox (badness 1990) in paragraph at lines 45242--45250 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45242--45250 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1014) in paragraph at lines 46679--46682 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [669] Underfull \hbox (badness 2401) in paragraph at lines 46812--46816 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [670] [671] Underfull \hbox (badness 3492) in paragraph at lines 46938--46940 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [672] Underfull \hbox (badness 2111) in paragraph at lines 47024--47029 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [673] [674] [675] [676] Underfull \hbox (badness 4001) in paragraph at lines 47272--47274 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 5417) in paragraph at lines 47673--47677 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [683] Underfull \hbox (badness 10000) in paragraph at lines 47734--47738 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [684]) (./compiler-pkg.tex Chapter 2. [685] [686] [687] [688]) (./datasets-pkg.tex Chapter 3. [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764]) (./grDevices-pkg.tex Chapter 4. [765] [766] [767] [768] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [778] [779] [780] [781] [782] [783] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [784] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [785] [786] [787] [788] [789] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [796] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [797] [798] [799] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823] [824] [825] Underfull \vbox (badness 10000) has occurred while \output is active [826] [827] [828] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [829] [830] [831] [832] [833] [834] [835] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [842] [843] [844] [845] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [846] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [847] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [848] [849] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [851] [852] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [853] [854] [855] [856] [857] [858] [859] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [860] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [861] [862] [863] [864] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [865] [866] [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [874] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [875] [876] [877] [878] [879] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [880] [881] [882] [883] [884]) (./graphics-pkg.tex Chapter 5. [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [922] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [957] [958] [959] [960] [961] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [962] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [963] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [964 ] [965 ] [966] [967] [968] [969] [970] [971] [972] [973] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [988 ] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1020] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1021] [1022] [1023] [1024]) (./grid-pkg.tex Chapter 6. [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1043] Underfull \vbox (badness 10000) has occurred while \output is active [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \vbox (badness 10000) has occurred while \output is active [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1106] [1107] [1108] [1109] [1110] [1111] [1112] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1113] [1114] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144]) (./methods-pkg.tex Chapter 7. [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] Underfull \vbox (badness 10000) has occurred while \output is active [1153] Underfull \vbox (badness 10000) has occurred while \output is active [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1171] [1172] [1173] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1174] [1175] [1176] [1177] [1178] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1179] [1180] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1181] [1182] [1183] [1184] [1185] [1186] [1187] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1195] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] Underfull \vbox (badness 10000) has occurred while \output is active [1213] Underfull \vbox (badness 10000) has occurred while \output is active [1214] [1215] [1216] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1217] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1218] [1219] [1220] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] [1234] [1235] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1236] [1237] [1238] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1239] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1240] [1241] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1281] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1282] [1283] [1284] [1285]) (./parallel-pkg.tex [1286] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1287] [1288] [1289] [1290] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1307] [1308] [1309]) (./splines-pkg.tex [1310] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324]) (./stats-pkg.tex Chapter 10. [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1377] [1378] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1424] [1425] [1426] [1427] [1428] Underfull \vbox (badness 10000) has occurred while \output is active [1429] [1430] [1431] Underfull \vbox (badness 10000) has occurred while \output is active [1432] [1433] [1434] [1435] [1436] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \vbox (badness 10000) has occurred while \output is active [1457] [1458] [1459] [1460] [1461] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1462] [1463] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1483] [1484] [1485] [1486] [1487] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1488] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1502] [1503] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1513] [1514] [1515] [1516] [1517] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1540] [1541] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1558] [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1590] [1591] Underfull \vbox (badness 10000) has occurred while \output is active [1592] Underfull \vbox (badness 10000) has occurred while \output is active [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1606] [1607] [1608] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Underfull \vbox (badness 10000) has occurred while \output is active [1609] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1685] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1710] [1711] [1712] [1713] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] Underfull \vbox (badness 10000) has occurred while \output is active [1737] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1738] [1739] [1740] [1741] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1742] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1744] [1745] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1746] [1747] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1748] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1749] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1750] [1751] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1769] [1770] [1771] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] Underfull \hbox (badness 1127) in paragraph at lines 30293--30296 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1780] [1781] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1801] [1802] [1803] [1804] [1805] [1806] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1815] [1816] [1817] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1818] [1819] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1820] [1821] [1822] [1823] [1824]) (./stats4-pkg.tex Chapter 11. [1825] [1826] [1827] Underfull \vbox (badness 10000) has occurred while \output is active [1828] [1829] [1830] [1831] [1832] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1833] [1834] [1835]) (./tcltk-pkg.tex [1836] Chapter 12. [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \vbox (badness 10000) has occurred while \output is active [1844] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856]) (./tools-pkg.tex Chapter 13. [1857] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1858] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1859] [1860] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [1861] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [1862] [1863] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1875] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1876] [1877] [1878] [1879] [1880] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [1881] [1882] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1883] [1884] [1885] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [1893] [1894] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1919] [1920] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [1927] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1928] [1929] [1930] [1931] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [1932] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1933] [1934] [1935]) (./utils-pkg.tex [1936] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [1948] [1949] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [1950] [1951] [1952] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] [1957] [1958] [1959] [1960] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [1971] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [1972] [1973] [1974] [1975] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [1995] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [1996] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2019] [2020] [2021] [2022] [2023] Underfull \hbox (badness 1448) in paragraph at lines 6017--6022 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 1371) in paragraph at lines 6565--6567 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2032] Underfull \hbox (badness 1502) in paragraph at lines 6654--6660 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6654--6660 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 6831--6840 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6831--6840 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2036] Underfull \hbox (badness 2150) in paragraph at lines 6893--6896 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2037] [2038] Underfull \hbox (badness 3118) in paragraph at lines 7032--7034 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2039] [2040] Underfull \hbox (badness 1325) in paragraph at lines 7211--7215 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2041] Underfull \hbox (badness 1424) in paragraph at lines 7303--7306 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2042] Underfull \hbox (badness 3219) in paragraph at lines 7375--7382 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7375--7382 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7375--7382 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7375--7382 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7383--7386 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2043] Underfull \hbox (badness 1024) in paragraph at lines 7512--7515 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2044] Underfull \hbox (badness 10000) in paragraph at lines 7545--7550 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2045] Underfull \hbox (badness 5133) in paragraph at lines 7604--7608 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 8268--8270 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 2310) in paragraph at lines 9055--9060 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1248) in paragraph at lines 9621--9625 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2076] Underfull \hbox (badness 1789) in paragraph at lines 9699--9701 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2077] [2078] [2079] [2080] Underfull \hbox (badness 2600) in paragraph at lines 9923--9926 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 1097) in paragraph at lines 10560--10563 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2089] [2090] Underfull \hbox (badness 3000) in paragraph at lines 10696--10701 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] Underfull \hbox (badness 2134) in paragraph at lines 11291--11296 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2099] Underfull \hbox (badness 10000) in paragraph at lines 11347--11352 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11347--11352 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 1824) in paragraph at lines 11845--11849 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2108] [2109] [2110] [2111] [2112] [2113] Underfull \hbox (badness 4060) in paragraph at lines 12290--12293 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12313--12313 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2114] [2115] [2116] [2117] Underfull \hbox (badness 2150) in paragraph at lines 12568--12570 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2118] [2119] [2120] Underfull \hbox (badness 10000) in paragraph at lines 12788--12792 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able [2121] Underfull \hbox (badness 10000) in paragraph at lines 12821--12827 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12836--12842 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2122] [2123] Underfull \hbox (badness 1009) in paragraph at lines 13011--13023 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2124] Underfull \hbox (badness 4779) in paragraph at lines 13051--13053 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13081--13088 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2125] [2126] [2127] [2128] [2129] [2130] Underfull \hbox (badness 3780) in paragraph at lines 13506--13512 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13524--13527 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2131] [2132] [2133] [2134] Underfull \hbox (badness 2302) in paragraph at lines 13734--13736 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2135] [2136] [2137] [2138] Underfull \hbox (badness 4441) in paragraph at lines 14033--14038 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14042--14045 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 2932) in paragraph at lines 14473--14480 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14473--14480 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2146] [2147] Underfull \hbox (badness 1460) in paragraph at lines 14637--14645 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used [2148] [2149] Underfull \hbox (badness 6510) in paragraph at lines 14783--14787 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14790--14793 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14790--14793 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] Underfull \hbox (badness 10000) in paragraph at lines 15463--15468 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15463--15468 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15469--15471 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2159] Underfull \hbox (badness 10000) in paragraph at lines 15528--15531 [][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download .packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][ ][]\T1/ptm/m/n/10 , [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174]) [2175] [2176] (./KernSmooth-pkg.tex Chapter 15. [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186]) (./MASS-pkg.tex Chapter 16. [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g lm}) has been already used, duplicate ignored \relax l.1479 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n ls}) has been already used, duplicate ignored \relax l.1480 ...{confint.nls}{confint-MASS}{confint.nls} [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] Underfull \hbox (badness 10000) in paragraph at lines 2785--2790 []\T1/zi4/m/sl/10 "geometric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "log-normal"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "lognormal"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "negative [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 2957--2959 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 1117) in paragraph at lines 4736--4739 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2253] Underfull \hbox (badness 1117) in paragraph at lines 4815--4818 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6082 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h as been already used, duplicate ignored \relax l.6082 ...sical N, P, K Factorial Experiment}{npk} [2271] [2272] [2273] [2274] [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] Underfull \hbox (badness 1117) in paragraph at lines 6983--6990 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2283] Underfull \hbox (badness 3138) in paragraph at lines 7054--7060 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2284] [2285] [2286] Underfull \hbox (badness 1910) in paragraph at lines 7233--7236 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/zi4/m/sl/10 min(p, [2287] [2288] [2289] [2290] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm}) has been already used, duplicate ignored \relax l.7510 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm.1}) has been already used, duplicate ignored \relax l.7510 ... for Profiling glm Objects}{profile.glm} [2291] [2292] [2293] [2294] Underfull \hbox (badness 4686) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331]) (./Matrix-pkg.tex [2332] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2333] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} [2335] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2336] [2337] [2338] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2339] [2340] Underfull \hbox (badness 2035) in paragraph at lines 590--593 []\T1/ptm/m/n/10 The value of []\T1/zi4/m/sl/10 bdiag() []\T1/ptm/m/n/10 in-her -its from class [][][]\T1/zi4/m/sl/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , whe reas []\T1/zi4/m/sl/10 .bdiag() []\T1/ptm/m/n/10 re-turns a [2341] [2342] [2343] Underfull \hbox (badness 5817) in paragraph at lines 913--916 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 BunchKaufmanFactorization[][][][]\ T1/ptm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][ ][]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 6758) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("BunchKaufman", ...) Underfull \hbox (badness 2961) in paragraph at lines 919--924 []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of [2344] [2345] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2346] [2347] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) has been already used, duplicate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2348] Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/zi4/m/sl/10 CHMfactor [] \T1/ptm/m/n/10 is based on CHOLMOD's C-level [2349] [2350] [2351] [2352] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} Underfull \hbox (badness 6220) in paragraph at lines 1656--1658 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2353] Underfull \hbox (badness 2334) in paragraph at lines 1730--1734 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 1730--1734 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2354] Underfull \vbox (badness 10000) has occurred while \output is active [2355] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol2inv} ) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2356] [2357] Underfull \hbox (badness 10000) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 CholeskyFactorization[][][][]\T1/p tm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\ T1/ptm/m/n/10 , by class Underfull \hbox (badness 7722) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1990) in paragraph at lines 2051--2060 []\T1/ptm/m/n/10 In \T1/ptm/b/n/10 Ma-trix []\T1/zi4/m/sl/10 < 1.6-0[]\T1/ptm/m /n/10 , class []\T1/zi4/m/sl/10 Cholesky []\T1/ptm/m/n/10 ex-tended [][][]\T1/z i4/m/sl/10 dtrMatrix[][][] []\T1/ptm/m/n/10 and class []\T1/zi4/m/sl/10 pCholes ky []\T1/ptm/m/n/10 ex-tended Underfull \hbox (badness 2334) in paragraph at lines 2066--2070 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2066--2070 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2358] [2359] Underfull \hbox (badness 6220) in paragraph at lines 2185--2187 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2360] [2361] Underfull \hbox (badness 2334) in paragraph at lines 2315--2319 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2315--2319 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2362] Underfull \vbox (badness 10000) has occurred while \output is active [2363] Underfull \vbox (badness 10000) has occurred while \output is active [2364] [2365] [2366] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans} ) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums}) has been already used, duplicate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans} ) has been already used, duplicate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums}) has been already used, duplicate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} [2367] [2368] [2369] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2370] [2371] [2372] [2373] [2374] [2375] Underfull \hbox (badness 1983) in paragraph at lines 3390--3398 []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unpackedMatrix[][][][]\T1/ptm/m/n/10 . Al-ter-na-tively into the (cur-rently) three sub-classes [][][]\T1/zi4/m/sl/ 10 ddenseMatrix[][][][]\T1/ptm/m/n/10 , [2376] [2377] [2378] [2379] Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2380] Underfull \hbox (badness 3417) in paragraph at lines 3828--3830 []\T1/zi4/m/sl/10 .sparseDiagonal() []\T1/ptm/m/n/10 ex-ists pri-mar-ily to lev er-age ef-fi-cient C-level meth-ods avail-able for [2381] [2382] Underfull \hbox (badness 8019) in paragraph at lines 3933--3935 []\T1/zi4/m/sl/10 signature(x = "nMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cally eq uiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [][][]\T1/zi4/m/sl/1 0 which[][][](x, Underfull \hbox (badness 10000) in paragraph at lines 3936--3940 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these g roup meth-ods re-turn a [2383] [2384] [2385] [2386] Underfull \hbox (badness 1902) in paragraph at lines 4263--4265 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) []\T1/ptm/m/n/10 is some-times prefer-able to (and more ef-fi-cient than) []\T1/zi4/m/sl/10 zapsmall(x, Underfull \hbox (badness 2020) in paragraph at lines 4300--4303 []\T1/ptm/m/n/10 a typ-i-cally sparse ma-trix; in-ter-nally co-erced to ei-ther []\T1/zi4/m/sl/10 "[][]dgCMatrix[][][]" []\T1/ptm/m/n/10 or [2387] [2388] [2389] Underfull \hbox (badness 4378) in paragraph at lines 4503--4512 []\T1/ptm/m/n/10 or [][][]\T1/zi4/m/sl/10 chol[][][]() []\T1/ptm/m/n/10 is typ- i-cally used, e.g., see []\T1/zi4/m/sl/10 selectMethod("coerce", c(from="dsyMat rix", [2390] [2391] [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [ ]\T1/zi4/m/sl/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/zi4/m/sl/10 "spa rseMatrix"[]\T1/ptm/m/n/10 , by classes [2394] Underfull \hbox (badness 4518) in paragraph at lines 4929--4932 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = Underfull \hbox (badness 3690) in paragraph at lines 4932--4935 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = [2395] [2396] Underfull \hbox (badness 2318) in paragraph at lines 5035--5039 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dgCMatrix"[]\T1/ptm/m/n/10 , di-rectl y. Class []\T1/zi4/m/sl/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Clas s []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , [2397] Underfull \hbox (badness 3240) in paragraph at lines 5151--5155 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/ n/10 : the [][][]\T1/zi4/m/sl/10 determinant[][][](x) [2398] [2399] [2400] [2401] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class [2402] Underfull \hbox (badness 10000) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/s l/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L)[]\T 1/ptm/m/n/10 . Underfull \hbox (badness 1776) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1"]] []\T1/ptm/m/n/10 rep-re-sent the same per-mu-ta-tion ma-trix Underfull \hbox (badness 10000) in paragraph at lines 5529--5544 []\T1/zi4/m/sl/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl /10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L, U, Q )[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(L, U, P)[]\ T1/ptm/m/n/10 . Underfull \hbox (badness 1142) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1."]] []\T1/ptm/m/n/10 are iden-ti-cal mod-ulo []\T1/zi4/m/sl/10 Dimna mes[]\T1/ptm/m/n/10 . The [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 1087) in paragraph at lines 5987--5993 []\T1/ptm/m/n/10 a string whose first three char-ac-ters spec-ify the class of the re-sult. It Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/zi4/m/sl/10 c("trace", "sumLog", "prod", "mi n", "max", "range", [2409] [2410] [2411] [2412] Underfull \hbox (badness 1931) in paragraph at lines 6262--6264 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the []\T1/zi4/m/sl/10 zero.print [] \T1/ptm/m/n/10 codes should be aligned, see [2413] [2414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h as been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2415] Underfull \hbox (badness 1005) in paragraph at lines 6476--6481 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. []\T1/zi4/m/sl/10 N A []\T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1189) in paragraph at lines 6476--6481 \T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 as by de-fault, []\ T1/zi4/m/sl/10 border.col <- if(lwd < .01) NA else NULL []\T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/zi4/m/sl/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use [2416] Overfull \hbox (42.75635pt too wide) in paragraph at lines 6545--6545 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2417] [2418] [2419] [2420] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of [2421] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite }) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini te}) has been already used, duplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h as been already used, duplicate ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) has been already used, duplicate ignored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2422] [2423] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr ic}) has been already used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2424] Overfull \hbox (26.39984pt too wide) in paragraph at lines 7124--7124 []\T1/zi4/m/sl/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$dou ble.eps, tol1 = 8 * tol, ...)[] [2425] [2426] [2427] Underfull \vbox (badness 10000) has occurred while \output is active [2428] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker }) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2429] [2430] [2431 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr ix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.7725 \item[\code{Dim},\code{Dimnames}:] The dimension (a length-2] Underfull \hbox (badness 2478) in paragraph at lines 7736--7741 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7744--7747 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 7968--7971 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2435] Underfull \hbox (badness 10000) in paragraph at lines 8029--8032 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2436] [2437] [2438] [2439] pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.* .Rpcent.}) has been already used, duplicate ignored \relax l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod }) has been already used, duplicate ignored \relax l.8384 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro d}) has been already used, duplicate ignored \relax l.8460 ...tcrossprod}{matmult-methods}{tcrossprod} [2440] Underfull \hbox (badness 10000) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 5359) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-t rix mul-ti-pli-ca-tion. Mul-ti-pli-ca-tion Underfull \hbox (badness 10000) in paragraph at lines 8627--8629 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 8629--8631 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an [2441] [2442] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8856 \aliasA{det}{Matrix-class}{det} [2443] Underfull \hbox (badness 1527) in paragraph at lines 8933--8935 []\T1/zi4/m/sl/10 signature(x = "Matrix")[]\T1/ptm/m/n/10 : sim-ply de-fined as []\T1/zi4/m/sl/10 prod(dim(x)) []\T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 8941--8944 []\T1/zi4/m/sl/10 signature(object = "Matrix")[]\T1/ptm/m/n/10 : draws an [][][ ]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 8946--8949 [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 9148--9150 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", logarithm = "missing")[] \T1/ptm/m/n/10 : sets Underfull \hbox (badness 10000) in paragraph at lines 9154--9156 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "NULL")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with Underfull \hbox (badness 10000) in paragraph at lines 9156--9158 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "list")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with [2447] Underfull \hbox (badness 10000) in paragraph at lines 9193--9196 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/zi4/m/sl/10 expand1[][][] []\T1/p tm/m/n/10 and [][][]\T1/zi4/m/sl/10 expand2[][][] []\T1/ptm/m/n/10 for con-stru ct-ing ma-trix fac-tors from [2448] Underfull \hbox (badness 10000) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/zi4/m/sl/10 X <- (X + t(X))/2 [ ]\T1/ptm/m/n/10 should be done, af-ter []\T1/zi4/m/sl/10 X <- [2449] [2450] Underfull \vbox (badness 10000) has occurred while \output is active [2451] Underfull \hbox (badness 2478) in paragraph at lines 9507--9512 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 9515--9518 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2452] [2453] Underfull \hbox (badness 5924) in paragraph at lines 9696--9698 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2454] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha s been already used, duplicate ignored \relax l.9738 \aliasA{norm}{norm-methods}{norm} [2455] [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 10031--10034 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2458] Underfull \hbox (badness 10000) in paragraph at lines 10095--10098 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2459] [2460] [2461] Underfull \hbox (badness 4242) in paragraph at lines 10295--10298 [][][]\T1/zi4/m/sl/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unp ack[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/zi4/m/sl/10 "[][] unpackedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2462] Underfull \hbox (badness 3547) in paragraph at lines 10383--10386 []\T1/zi4/m/sl/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and o th-ers listed by []\T1/zi4/m/sl/10 showMethods("%*%", [2463] [2464] [2465] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.10601 \aliasA{qr}{qr-methods}{qr} [2466] [2467] [2468] [2469] Underfull \hbox (badness 7186) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/zi4/m/sl/10 qr[][][](x, tol, [2470] [2471] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11002 \aliasA{rcond}{rcond-methods}{rcond} [2472] [2473] [2474] [2475] Underfull \hbox (badness 2351) in paragraph at lines 11284--11292 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1509) in paragraph at lines 11284--11292 \T1/ptm/m/n/10 in-dices, if not []\T1/zi4/m/sl/10 symmetric [][]sample.int[][][ ](nrow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/zi4/m/sl/10 rand.x []\T1/pt m/m/n/10 is not []\T1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 --- [2476] [2477] Underfull \hbox (badness 10000) in paragraph at lines 11441--11444 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 SchurFactorization[][][][]\T1/ptm/ m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\T1/ ptm/m/n/10 , by class [2478] [2479] [2480] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11630 \aliasA{solve}{solve-methods}{solve} [2481] Underfull \hbox (badness 5316) in paragraph at lines 11816--11821 []\T1/ptm/m/n/10 Methods for dense []\T1/zi4/m/sl/10 a []\T1/ptm/m/n/10 are bui lt on 14 LA-PACK rou-tines: class []\T1/zi4/m/sl/10 d..Matrix[]\T1/ptm/m/n/10 , where [2482] Underfull \hbox (badness 10000) in paragraph at lines 11916--11919 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2483] Underfull \hbox (badness 10000) in paragraph at lines 11952--11955 []\T1/ptm/m/n/10 character string or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 11963--11967 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 10000) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 (object = "sparseMatrix", uniqT=FALSE)[]\T1/ptm/m/n/10 : Re-t urns an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 "sparseSummary" []\T1/ptm/m/n/10 which is ba-si-cally a [][][ ]\T1/zi4/m/sl/10 data.frame[][][] []\T1/ptm/m/n/10 with columns []\T1/zi4/m/sl/ 10 (i,j,x) []\T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 signature(from = "factor", to = "sparseMatrix")[]\T1/ptm/m/n/ 10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 "sparseMatrix" []\T1/ptm/m/n/10 pro-duces the ma-trix of in-d i-ca-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 5036) in paragraph at lines 12918--12920 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2497] Underfull \hbox (badness 2828) in paragraph at lines 13084--13087 []\T1/zi4/m/sl/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m /n/10 co-erces sparse vec-tors to Underfull \hbox (badness 2486) in paragraph at lines 13106--13109 []\T1/zi4/m/sl/10 signature(x = "sparseVector") []\T1/ptm/m/n/10 re-peat []\T1/ zi4/m/sl/10 x[]\T1/ptm/m/n/10 , with the same ar-gu-ment list []\T1/zi4/m/sl/10 (x, times, [2498] [2499] [2500] [2501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash. }) has been already used, duplicate ignored \relax l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13398--13400 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2502] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b een already used, duplicate ignored \relax l.13445 \aliasA{[}{subscript-methods}{[} [2503] [2504] Underfull \hbox (badness 2057) in paragraph at lines 13656--13658 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 10000) in paragraph at lines 13670--13675 []\T1/zi4/m/sl/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-tri x, in-her-it-ing from [][][]\T1/zi4/m/sl/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2505] [2506] Underfull \hbox (badness 10000) in paragraph at lines 13826--13831 []\T1/ptm/m/n/10 Note that all []\T1/zi4/m/sl/10 new(.)[]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 spMatrix[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 spar seMatrix[][][](*, repr="T") []\T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 13832--13838 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as []\ T1/zi4/m/sl/10 %*% []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 crossprod []\T1/ptm/m /n/10 are de-fined [2507] [2508] [2509] Overfull \hbox (21.75807pt too wide) in paragraph at lines 14021--14027 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/zi4/m/sl/10 usc_q.GAL\T1/ptm/m/n/10 ' ( re-trieved in 2008 from `\T1/zi4/m/sl/10 http://sal.uiuc.edu/weights/zips/usc.z ip\T1/ptm/m/n/10 ' [2510] [2511] [2512]) (./boot-pkg.tex Chapter 18. [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2523] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2524] Underfull \vbox (badness 10000) has occurred while \output is active [2525] [2526] [2527] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2528] [2529] [2530] [2531] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2532] [2533] [2534] [2535] [2536] [2537] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are []\T1/zi4/m/sl/10 "ordinary" []\T1/ptm/m/n/10 (case re-sam-pling), [2538] [2539] Underfull \vbox (badness 10000) has occurred while \output is active [2540] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2541] [2542] [2543] [2544] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2545] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2546] [2547] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/zi4/m /sl/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 n []\T1/ptm/m/n /10 is the sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/zi4/m/sl/10 unbiased []\T1/ptm/m/n/10 is []\T1/zi 4/m/sl/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/zi4/m/sl/10 1/n [ ]\T1/ptm/m/n/10 is used. This is mul-ti-plied by [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] [2564] [2565] [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2582] [2583] [2584] [2585] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2586] [2587] [2588] [2589] [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/zi4/m/sl/10 " saddle.distn"[]\T1/ptm/m/n/10 . See the help file for [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613] [2614] [2615]) (./class-pkg.tex [2616] Chapter 19. [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632]) (./cluster-pkg.tex Chapter 20. [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Underfull \hbox (badness 1412) in paragraph at lines 782--787 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][][]\T1/zi4/m/sl/10 agnes[][][][] \T1/ptm/m/n/10 ), orig-i-nally. Met-ric []\T1/zi4/m/sl/10 "jaccard"[]\T1/ptm/m/ n/10 : Kamil Ko-zlowski [2645] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2646] [2647] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2648] [2649] [2650] [2651] [2652] [2653] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 [2654] [2655] Underfull \hbox (badness 2503) in paragraph at lines 1583--1586 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/1 0 or []\T1/zi4/m/sl/10 "twins"[]\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2656] Underfull \hbox (badness 4954) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/zi4/m/s l/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2657] Underfull \hbox (badness 7667) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/zi4/m/sl/10 integer[]\T1/ptm/m/n/10 ) columns of []\ T1/zi4/m/sl/10 x[]\T1/ptm/m/n/10 , aka []\T1/zi4/m/sl/10 "I" []\T1/ptm/m/n/10 i n re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2658] [2659] Overfull \hbox (5.24408pt too wide) in paragraph at lines 1866--1866 []\T1/zi4/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (11.23795pt too wide) in paragraph at lines 1877--1877 []\T1/zi4/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] [2660] [2661] [2662] [2663] [2664] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 10000) in paragraph at lines 2223--2229 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also th e [][][]\T1/zi4/m/sl/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/zi4/m/s l/10 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2665] [2666] [2667] [2668] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] Underfull \hbox (badness 2980) in paragraph at lines 3059--3063 [][][]\T1/zi4/m/sl/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-e nces; [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 daisy[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [2677] [2678] [2679] [2680] [2681] [2682] Underfull \hbox (badness 1142) in paragraph at lines 3398--3401 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2683] Underfull \hbox (badness 1142) in paragraph at lines 3517--3520 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2684] [2685] [2686] [2687] Underfull \hbox (badness 2582) in paragraph at lines 3740--3745 [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 clusplot .default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pam[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 clara[][][][]\T1/ptm/m/n/10 , [2688] Underfull \hbox (badness 2698) in paragraph at lines 3802--3807 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls []\T1/ zi4/m/sl/10 plot([][]as.hclust[][][](x), ...)[]\T1/ptm/m/n/10 , which Underfull \hbox (badness 4792) in paragraph at lines 3802--3807 \T1/ptm/m/n/10 dis-patches to [][][]\T1/zi4/m/sl/10 plot.hclust[][][](..)[]\T1/ ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/zi4/m/sl/10 x x <- [2689] Underfull \hbox (badness 10000) in paragraph at lines 3875--3877 []\T1/ptm/m/n/10 Available as `\T1/zi4/m/sl/10 pluton.dat\T1/ptm/m/n/10 ' from the archive of the Uni-ver-sity of Antwer-pen, [2690] [2691] [2692] Underfull \hbox (badness 10000) in paragraph at lines 4089--4091 []\T1/ptm/m/n/10 a []\T1/zi4/m/sl/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/zi4/m/sl/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2693] [2694] [2695] [2696] Underfull \hbox (badness 2626) in paragraph at lines 4318--4323 []\T1/ptm/m/n/10 arguments passed [][][]\T1/zi4/m/sl/10 barplot[][][]()[]\T1/pt m/m/n/10 ; note that the de-fault used to be []\T1/zi4/m/sl/10 col = [2697] Underfull \hbox (badness 1383) in paragraph at lines 4395--4400 []\T1/ptm/m/n/10 While []\T1/zi4/m/sl/10 silhouette() []\T1/ptm/m/n/10 is \T1/p tm/m/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][][]\T1/zi4/m/sl/10 partition[][ ][] []\T1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] Underfull \hbox (badness 10000) in paragraph at lines 4836--4838 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2706] [2707]) (./codetools-pkg.tex [2708] Chapter 21. [2709] [2710] [2711] [2712] [2713]) (./foreign-pkg.tex [2714] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2715] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2716] [2717] [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 5417) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/zi4/m/sl/10 "append" []\T1/ptm/m/n/10 (the de-fau lt), the first orig-i-nal value la-bel is Underfull \hbox (badness 6001) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/z i4/m/sl/10 paste0(label, [2723] Overfull \hbox (6.73795pt too wide) in paragraph at lines 620--620 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2724] [2725] [2726] Underfull \hbox (badness 10000) in paragraph at lines 808--809 [2727] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2728] [2729] Underfull \hbox (badness 10000) in paragraph at lines 986--988 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2730] [2731] [2732] [2733] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/zi4/m/sl/10 forei gn:::writeForeignStata[]\T1/ptm/m/n/10 , [2734] [2735]) (./lattice-pkg.tex [2736] Chapter 23. [2737] Underfull \hbox (badness 1484) in paragraph at lines 114--118 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/zi4/m/sl/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2738] [2739] [2740] Underfull \vbox (badness 10000) has occurred while \output is active [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] Underfull \hbox (badness 1062) in paragraph at lines 1395--1399 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2754] Underfull \vbox (badness 4805) has occurred while \output is active [2755] Underfull \hbox (badness 1803) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 Lattice[][][] []\T1/ptm/m/n/10 for an overview of the pac k-age, as well as [][][]\T1/zi4/m/sl/10 barchart.table[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.trellis[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 panel.superpose[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.loess[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.average[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/zi4/m/sl/10 strip.default[][][][]\T1/ptm/m/n/10 , [2756] [2757] Underfull \hbox (badness 3009) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/zi4/m/sl/10 xyplot[ ][][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2758] [2759] [2760] [2761] [2762] [2763] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fi ed, the value of [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] Underfull \vbox (badness 10000) has occurred while \output is active [2772] [2773] Underfull \hbox (badness 2781) in paragraph at lines 2871--2873 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the []\T1/zi4/m/sl/10 co l.regions []\T1/ptm/m/n/10 ar-gu-ment in [2774] Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2775] [2776] [2777] [2778] [2779] [2780] [2781] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel} ) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2782] [2783] Underfull \hbox (badness 2368) in paragraph at lines 3644--3644 []\T1/zi4/m/sl/10 auto.key[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 prepanel[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 scales[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 strip[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 groups[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 x lab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/1 0 ylab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[]\T1/ptm/m/n/10 , [2784] [2785] [2786] [2787] [2788] Underfull \hbox (badness 5696) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 by spec-i-fy-ing []\T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")[]\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2789] [2790] [2791] Underfull \hbox (badness 1389) in paragraph at lines 4175--4183 \T1/ptm/m/n/10 based on HCL palettes, but cus-tomiza-tion of the palettes is al -lowed. Ear-lier be-haviour [2792] Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2793] [2794] [2795] Underfull \hbox (badness 3492) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/zi4/m/sl/10 col []\T1/ptm/m/n /10 is used for com-po-nents []\T1/zi4/m/sl/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 p lot.symbol[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 and [2796] [2797] [2798] [2799] [2800] [2801] [2802] Underfull \vbox (badness 10000) has occurred while \output is active [2803] [2804] [2805] Underfull \hbox (badness 6157) in paragraph at lines 5232--5235 []\T1/zi4/m/sl/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gl es via rect-an-gles. []\T1/zi4/m/sl/10 print.shingle []\T1/ptm/m/n/10 and [2806] [2807] [2808] [2809] [2810] [2811] [2812] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5684--5687 []\T1/zi4/m/sl/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on th e left of pan-els us-ing [2813] [2814] [2815] [2816] [2817] Underfull \hbox (badness 4805) in paragraph at lines 6045--6049 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/zi4/m/sl/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , ex-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 6056--6063 []\T1/zi4/m/sl/10 panel.identify[]\T1/ptm/m/n/10 . For []\T1/zi4/m/sl/10 panel. identify[]\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 6056--6063 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For []\T1 /zi4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 trellis.switchFocus[]\T1/ptm/m/n/10 , th ese are used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 6056--6063 [][][]\T1/zi4/m/sl/10 lattice.options[][][][]\T1/ptm/m/n/10 ) for high-light-in g the cho-sen view-port if so re-quested. [2818] [2819] [2820] [2821] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6356--6361 \T1/ptm/m/n/10 ter []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 is used if t here is no group-ing vari-able, oth-er-wise [2822] [2823] Underfull \hbox (badness 2310) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/zi4/m/sl/10 x []\T1/ptm/ m/n/10 for ev-ery level of []\T1/zi4/m/sl/10 y []\T1/ptm/m/n/10 (or the other w ay round if [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 3168) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. Use [2836] [2837] [2838] [2839] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2840] [2841] [2842] Underfull \hbox (badness 3333) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 default colours are ob-tained from []\T1/zi4/m/sl/10 plot.symb ol []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 plot.line []\T1/ptm/m/n/10 us-ing Underfull \hbox (badness 2318) in paragraph at lines 7836--7844 []\T1/zi4/m/sl/10 "spline" []\T1/ptm/m/n/10 adds a cu-bic smooth-ing spline fit (same as [][][]\T1/zi4/m/sl/10 panel.spline[][][][]\T1/ptm/m/n/10 ). [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/zi4/m/sl/10 panel.supe rpose []\T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8924--8926 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 ([]\T1/zi4/m/sl/10 panel.superpose.2 []\T1/ptm/m/n/10 orig-i-n ally con- [2858] [2859] [2860] Underfull \hbox (badness 3895) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/zi4/m/sl/10 type []\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in Underfull \hbox (badness 6625) in paragraph at lines 9095--9095 []\T1/zi4/m/sl/10 perspective[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 distance[]\T1 /ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 zlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 scr een[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 R.mat[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/ 10 aspect[]\T1/ptm/m/n/10 , [2861] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2862] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2863] Underfull \hbox (badness 5908) in paragraph at lines 9283--9286 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by []\T1/zi4/m/sl/10 xscale .components.default []\T1/ptm/m/n/10 and [2864] [2865] [2866] [2867] Underfull \hbox (badness 2418) in paragraph at lines 9574--9578 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing []\T1/z i4/m/sl/10 left, right, left.name, right.name, [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 2310) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/zi4/m/sl/10 "Svansota"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Manchuria "[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "No. 475"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "Velvet"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 10023--10026 []\T1/ptm/m/n/10 Factor with 6 lev-els: []\T1/zi4/m/sl/10 "Grand Rapids"[]\T1/p tm/m/n/10 , []\T1/zi4/m/sl/10 "Duluth"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Uni versity Farm"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Morris"[]\T1/ptm/m/n/10 , [2875] [2876] [2877] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma} ) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2878] [2879] [2880] Underfull \hbox (badness 4144) in paragraph at lines 10473--10476 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10473--10476 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2881] [2882]) (./mgcv-pkg.tex Chapter 24. [2883] [2884] [2885] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2886] [2887] [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gamObject[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][] [][]predi ct.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.gam[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/ m/sl/10 gam.side[][][][]\T1/ptm/m/n/10 , [2890] [2891] [2892] [2893] [2894] [2895] Underfull \hbox (badness 1406) in paragraph at lines 704--705 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2896] [2897] Underfull \hbox (badness 1158) in paragraph at lines 814--816 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2898] Underfull \hbox (badness 1259) in paragraph at lines 877--878 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2899] Underfull \vbox (badness 10000) has occurred while \output is active [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1281) in paragraph at lines 1272--1273 []\T1/zi4/m/sl/10 deviance[]\T1/ptm/m/n/10 ,[]\T1/zi4/m/sl/10 martingale[]\T1/p tm/m/n/10 ,[]\T1/zi4/m/sl/10 score[]\T1/ptm/m/n/10 , or []\T1/zi4/m/sl/10 schoe nfeld []\T1/ptm/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2906] [2907] Underfull \vbox (badness 10000) has occurred while \output is active [2908] Underfull \vbox (badness 10000) has occurred while \output is active [2909] [2910] Underfull \vbox (badness 10000) has occurred while \output is active [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 1142) in paragraph at lines 2604--2608 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2929] Underfull \hbox (badness 1043) in paragraph at lines 2630--2636 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2930] [2931] [2932] [2933] [2934] [2935] Underfull \vbox (badness 10000) has occurred while \output is active [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/zi4/m/sl/10 gam []\T1/pt m/m/n/10 mod-els us-ing []\T1/zi4/m/sl/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (see [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] [2958] Underfull \hbox (badness 1184) in paragraph at lines 4358--4362 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] Underfull \hbox (badness 1142) in paragraph at lines 5081--5085 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2971] Underfull \hbox (badness 1231) in paragraph at lines 5185--5187 []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 per-forms poorly with bi-nary data, sin ce it uses PQL. It is bet-ter to use []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 wit h [2972] [2973] [2974] Underfull \vbox (badness 10000) has occurred while \output is active [2975] [2976] [2977] [2978] Underfull \hbox (badness 2181) in paragraph at lines 5626--5627 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \hbox (badness 10000) in paragraph at lines 6130--6131 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/zi4/m/sl/10 gam(. ..,fit=FALSE) []\T1/ptm/m/n/10 or [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] Underfull \hbox (badness 1142) in paragraph at lines 6715--6719 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2999] [3000] [3001] Underfull \vbox (badness 10000) has occurred while \output is active [3002] [3003] [3004] [3005] Underfull \hbox (badness 1087) in paragraph at lines 7087--7088 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 rho []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/1 0 theta []\T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this case, and if [3006] [3007] [3008] Underfull \vbox (badness 10000) has occurred while \output is active [3009] Underfull \vbox (badness 10000) has occurred while \output is active [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 1242) in paragraph at lines 8046--8047 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3022] Underfull \hbox (badness 1122) in paragraph at lines 8072--8073 []\T1/ptm/m/n/10 When us-ing [][][]\T1/zi4/m/sl/10 NCV[][][] []\T1/ptm/m/n/10 w ith [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 worth-while per-for-mance im-prove-ments are avail-able by set-ting [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 6001) in paragraph at lines 8785--8787 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] Underfull \vbox (badness 10000) has occurred while \output is active [3046] [3047] Underfull \hbox (badness 1038) in paragraph at lines 9533--9536 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/zi4/m/sl/10 Di m.pdIndot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 coef.pdIdnot[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9533--9536 []\T1/zi4/m/sl/10 logDet.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdConstruc t.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdIdnot[]\T1/ptm/m/n/10 , [3048] Underfull \hbox (badness 10000) in paragraph at lines 9589--9592 []\T1/ptm/m/n/10 These func-tions ([]\T1/zi4/m/sl/10 pdTens[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/sl/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFacto r.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] Underfull \hbox (badness 1852) in paragraph at lines 10261--10264 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3060] [3061] [3062] Underfull \hbox (badness 1852) in paragraph at lines 10430--10433 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3063] [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] Underfull \hbox (badness 1205) in paragraph at lines 10670--10671 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10670--10671 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10676--10681 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3067] Underfull \hbox (badness 1205) in paragraph at lines 10760--10761 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10760--10761 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3068] [3069] [3070] Underfull \hbox (badness 1253) in paragraph at lines 10959--10961 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3071] [3072] [3073] [3074] [3075] [3076] Underfull \hbox (badness 4792) in paragraph at lines 11220--11223 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/zi4/m/s l/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/zi4/m/sl/10 gam[][][] []\ T1/ptm/m/n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 11220--11223 \T1/ptm/m/n/10 see [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 . If smooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3077] Underfull \hbox (badness 10000) in paragraph at lines 11327--11330 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/zi4/m/sl /10 "deviance"[]\T1/ptm/m/n/10 , [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 3861) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [3092] [3093] Underfull \hbox (badness 1320) in paragraph at lines 12233--12238 \T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 b.orig = D*b.repara []\T1/ptm/m/n/10 (wher e []\T1/zi4/m/sl/10 b.orig []\T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec- tor). If ma- [3094] Underfull \hbox (badness 1975) in paragraph at lines 12339--12344 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3095] [3096] Underfull \hbox (badness 1762) in paragraph at lines 12428--12440 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][][]\T1/zi4/m/sl/10 tprs[][][] []\T1/ptm/m/n/10 ); []\T1/zi4/m/sl/10 ts.smooth.spec []\T1/ptm/m/n/10 (thin pla te re-gres-sion splines with [3097] [3098] [3099] Underfull \hbox (badness 7667) in paragraph at lines 12640--12646 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of o ne or two vari-ables, spec-i-fied via terms like [3100] Underfull \hbox (badness 10000) in paragraph at lines 12681--12682 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] Underfull \hbox (badness 10000) in paragraph at lines 12958--12960 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3106] [3107] Underfull \hbox (badness 10000) in paragraph at lines 13088--13089 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3108] [3109] [3110] Underfull \hbox (badness 1436) in paragraph at lines 13224--13231 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 only al-lows one [3111] [3112] Underfull \hbox (badness 10000) in paragraph at lines 13323--13324 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] Underfull \hbox (badness 10000) in paragraph at lines 13924--13930 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13924--13930 []\T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 for-mula. Note [3123] [3124] [3125] Underfull \vbox (badness 10000) has occurred while \output is active [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] Underfull \hbox (badness 10000) in paragraph at lines 14268--14269 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3129] [3130] [3131] [3132] Overfull \hbox (35.26862pt too wide) in paragraph at lines 14480--14480 []\T1/zi4/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3133] [3134] Underfull \hbox (badness 3895) in paragraph at lines 14626--14629 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of a ny num-ber of vari-ables, spec-i-fied via terms like [3135] Underfull \hbox (badness 10000) in paragraph at lines 14671--14673 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3136] [3137] [3138] [3139] [3140] Underfull \hbox (badness 1371) in paragraph at lines 14951--14957 []\T1/zi4/m/sl/10 bs="ad" []\T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-ti ve smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14962--14964 []\T1/zi4/m/sl/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see Underfull \hbox (badness 1132) in paragraph at lines 14962--14964 [][][]\T1/zi4/m/sl/10 smooth.construct.fs.smooth.spec[][][][]\T1/ptm/m/n/10 ) i s avail-able for the case in which a smooth is [3141] Underfull \hbox (badness 6461) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Duchon.spline[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cubic.regression.spline[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/sl/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4 /m/sl/10 d.spline[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 soap[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Spherical.Spline[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][][]\T1/ptm/m/n/10 , [3142] [3143] [3144] [3145] Underfull \hbox (badness 2326) in paragraph at lines 15200--15207 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][][]\T1/zi4/m/sl/10 smooth.construct[][][] []\T1/ptm/m/n/10 and [3146] Underfull \hbox (badness 2158) in paragraph at lines 15285--15285 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] Underfull \vbox (badness 10000) has occurred while \output is active [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] Overfull \hbox (21.42029pt too wide) in paragraph at lines 16847--16847 []\T1/zi4/m/sl/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL ,unconditional=FALSE, ...)[] [3172] [3173] [3174] Underfull \hbox (badness 1796) in paragraph at lines 16960--16963 []\T1/ptm/m/n/10 other op-tions to pass on to [][][]\T1/zi4/m/sl/10 persp[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 or [][][] \T1/zi4/m/sl/10 contour[][][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183]) (./nlme-pkg.tex [3184] Chapter 25. [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] Underfull \hbox (badness 10000) in paragraph at lines 2251--2257 [][][]\T1/zi4/m/sl/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cor ARMA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.corMatrix .corCompSymm}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.3185 ] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] Underfull \hbox (badness 1067) in paragraph at lines 4410--4415 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] Underfull \hbox (badness 10000) in paragraph at lines 5156--5160 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/sl/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 getCovariate.varFunc[][][][]\T1/ptm/m/n/10 , [3264] [3265] [3266] [3267] [3268] [3269] [3270] Underfull \hbox (badness 10000) in paragraph at lines 5588--5591 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroups.lmList[][][][]\ T1/ptm/m/n/10 , [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 10000) in paragraph at lines 5969--5974 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 getGroupsFormula.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroupsFormula.lme[][][][]\T1/ptm/m/n/10 , [3278] [3279] [3280] [3281] Underfull \hbox (badness 1490) in paragraph at lines 6244--6255 [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsObject[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.gls[] [][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 qqnorm.gls[][][][]\T1/ptm/m/n/10 , [3282] Underfull \hbox (badness 10000) in paragraph at lines 6308--6310 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3283] [3284] [3285] [3286] [3287] [3288] Underfull \hbox (badness 10000) in paragraph at lines 6717--6719 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3289] [3290] [3291] [3292] Underfull \hbox (badness 10000) in paragraph at lines 6988--6995 [][][]\T1/zi4/m/sl/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gap ply[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gsummary[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plo t.nffGroupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.nfnGroupedD ata[][][][]\T1/ptm/m/n/10 , [3293] [3294] [3295] [3296] Underfull \hbox (badness 10000) in paragraph at lines 7248--7253 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 In itialize.glsStruct[][][][]\T1/ptm/m/n/10 , [3297] [3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] Underfull \hbox (badness 10000) in paragraph at lines 8530--8532 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3316] [3317] [3318] [3319] [3320] Underfull \hbox (badness 10000) in paragraph at lines 8815--8822 [][][]\T1/zi4/m/sl/10 lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lme.lmLi st[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.lmList[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 pooledSD[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 predict.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 residuals.lmLi st[][][][]\T1/ptm/m/n/10 , [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 10000) in paragraph at lines 9336--9343 [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/zi4/m/sl/10 gls[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik.corStruct[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik .lmList[][][][]\T1/ptm/m/n/10 , [3329] [3330] [3331] [3332] [3333] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9698 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1} ) has been already used, duplicate ignored \relax l.9698 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343] [3344] [3345] Underfull \hbox (badness 1596) in paragraph at lines 10475--10501 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3346] [3347] Underfull \hbox (badness 1490) in paragraph at lines 10591--10597 [][][]\T1/zi4/m/sl/10 nlmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlme.nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlmeObject[][][][]\ T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 nlmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pdClasses [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 reStruct[][][][]\T1/ptm/m/n/10 , [3348] [3349] [3350] Underfull \hbox (badness 10000) in paragraph at lines 10832--10834 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] Underfull \hbox (badness 1286) in paragraph at lines 13735--13742 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/zi4/m/ sl/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/zi4/m/sl/10 inner []\T1/ptm/m/n/1 0 or [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects}) has been already used, duplicate ignored \relax l.15178 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects.1}) has been already used, duplicate ignored \relax l.15178 ...Extract Random Effects}{random.effects} [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423] [3424] Underfull \hbox (badness 3884) in paragraph at lines 15817--15821 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15817--15821 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15817--15821 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ sl/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3425] [3426] Underfull \hbox (badness 1067) in paragraph at lines 15929--15934 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3427] [3428] [3429] [3430] Underfull \hbox (badness 1448) in paragraph at lines 16172--16181 \T1/ptm/m/n/10 Op-tions in-clude []\T1/zi4/m/sl/10 "response" []\T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] Underfull \hbox (badness 1728) in paragraph at lines 16876--16879 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3441] [3442] [3443] [3444] [3445] Underfull \hbox (badness 8056) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 Symmetry" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdCompSymm[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Diagonal" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl /10 pdDiag[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 an Identity" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdIdent[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite, Natural Underfull \hbox (badness 5756) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 Parametrization" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdNatur al[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite" []\T1/ptm/m/ n/10 for [3446] [3447] [3448] [3449] [3450] Underfull \hbox (badness 10000) in paragraph at lines 17532--17540 [][][]\T1/zi4/m/sl/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 var ConstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varConstProp[][][][]\T 1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varIdent[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varPower[][][][]\T1/ptm/m/n/10 , [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] Underfull \hbox (badness 10000) in paragraph at lines 18242--18252 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram .corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corRatio[][][][ ]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18242--18252 [][][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Variogram.corSpher[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Vari ogram.default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.gls[][][] []\T1/ptm/m/n/10 , [3461] [3462] [3463] [3464] [3465] Underfull \hbox (badness 5036) in paragraph at lines 18566--18575 [][][]\T1/zi4/m/sl/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.default[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom. 1}) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3479] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [3480] [3481] [3482] [3483] [3484] [3485] [3486]) (./rpart-pkg.tex Chapter 27. [3487] [3488] [3489] [3490] [3491] [3492] [3493] [3494] [3495] [3496] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , adds to the la-bel Underfull \hbox (badness 1348) in paragraph at lines 771--775 \T1/zi4/m/sl/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method []\T1/zi4/m/sl/10 class[]\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 for [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]) (./spatial-pkg.tex [3516] Chapter 28. [3517] [3518] [3519] [3520] [3521] [3522] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535]) (./survival-pkg.tex [3536] Chapter 29. [3537] [3538] [3539] [3540] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3541] [3542] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h as been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3555] [3556] [3557] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3558] Underfull \hbox (badness 3679) in paragraph at lines 1455--1459 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by []\T1/zi4/m/sl/10 table(colon$nodes, [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] Underfull \hbox (badness 3250) in paragraph at lines 2143--2158 \T1/ptm/m/n/10 ing guides and prepend []\T1/zi4/m/sl/10 survival:: []\T1/ptm/m/ n/10 onto ev-er-thing, in-clud-ing the spe-cial terms, e.g., Underfull \hbox (badness 10000) in paragraph at lines 2143--2158 []\T1/zi4/m/sl/10 survival::coxph(survival:Surv(time, status) ~ age + survival: :cluster(inst), [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] Underfull \hbox (badness 1389) in paragraph at lines 3661--3663 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3591] [3592] [3593] [3594] Overfull \hbox (467.89665pt too wide) in alignment at lines 3947--3947 [] [] [3595] [3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606] [3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] [3618] [3619] [3620] Underfull \hbox (badness 5274) in paragraph at lines 5694--5696 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "summary.survfit"[]\T1/p tm/m/n/10 , which is the re-sult of the [3621] [3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631] [3632] [3633] [3634] [3635] [3636] [3637] [3638] Underfull \hbox (badness 1281) in paragraph at lines 6962--6965 []\T1/ptm/m/n/10 type of resid-u-als, with choices of []\T1/zi4/m/sl/10 "respon se"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "deviance"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "dfbeta"[]\T1/ptm/m/n/10 , [3639] [3640] [3641] [3642] [3643] [3644] [3645] [3646] [3647] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7545 ...ata from a soldering experiment}{solder} [3648] [3649] [3650] [3651] [3652] [3653] [3654] [3655] [3656] [3657] [3658] [3659] [3660] [3661] [3662] [3663] [3664] [3665] [3666] [3667] [3668] [3669] Underfull \hbox (badness 1038) in paragraph at lines 9152--9158 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3670] [3671] [3672] [3673] [3674] Underfull \hbox (badness 10000) in paragraph at lines 9510--9515 [][][]\T1/zi4/m/sl/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 survfit.object [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][][]\T1/ptm/m/n/10 , [3675] [3676] [3677] [3678] [3679] Underfull \hbox (badness 4441) in paragraph at lines 9903--9913 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3680] [3681] Underfull \hbox (badness 1490) in paragraph at lines 10078--10087 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] []\T1/ptm/m/n/10 for sur-vival curves from Cox mod-els, [][][]\T1/zi4/m/sl/10 survfit.object[][][] []\T1/ptm/m/n/10 for a de-scrip-tion Underfull \hbox (badness 2213) in paragraph at lines 10078--10087 \T1/ptm/m/n/10 of the com-po-nents of a surv-fit ob-ject, [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lines.survfit[][][][]\T1/ptm/m/n/10 , [3682] [3683] [3684] [3685] [3686] [3687] [3688] Underfull \hbox (badness 1354) in paragraph at lines 10580--10584 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3689] [3690] [3691] [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] [3700] [3701] [3702] [3703] [3704] [3705] [3706] [3707] [3708] [3709] [3710] [3711] [3712]) No file fullrefman.ind. (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) pdfTeX warning (dest): name{Rfn.tree} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.memory.limit} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis t, replaced by a 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This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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[3] [4] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . 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This reads the Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [113] [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [124] [125] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [211] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [212] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [213] [214] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [215] Underfull \vbox (badness 1418) has occurred while \output is active [216] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [217] [218] [219] [220] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [229] [230] [231] [232] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [233] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [234] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [245] [246] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [247] [248] [249] [250] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [251] [252] [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] Underfull \vbox (badness 10000) has occurred while \output is active [261] Underfull \vbox (badness 10000) has occurred while \output is active [262] [263] [264] [265] [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [285] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [292] [293] [294] [295] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [313] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , [314] Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [315] [316] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [329] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [366] [367] [368] [369] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [370] [371] [372] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [379] [380] [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [388] [389] [390] [391] [392] [393] [394] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [395] [396] [397] [398] [399] [400] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [401] Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [402] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [403] Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [407] Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [413] [414] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [415] [416] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \vbox (badness 10000) has occurred while \output is active [449] [450] [451] [452] [453] [454] [455] [456] Underfull \hbox (badness 1533) in paragraph at lines 31986--31989 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [457] [458] [459] Underfull \hbox (badness 1163) in paragraph at lines 32157--32168 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [460] [461] [462] [463] [464] [465] [466] [467] Underfull \hbox (badness 6300) in paragraph at lines 32703--32705 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] Underfull \hbox (badness 10000) in paragraph at lines 33826--33830 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33826--33830 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33847--33849 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33850--33854 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [484] [485] [486] [487] [488] [489] [490] [491] [492] Underfull \hbox (badness 1655) in paragraph at lines 34452--34454 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 2261) in paragraph at lines 35655--35660 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] Underfull \hbox (badness 3668) in paragraph at lines 36690--36694 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [525] Underfull \hbox (badness 10000) in paragraph at lines 36781--36792 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 38413--38415 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [550] [551] [552] [553] [554] Underfull \hbox (badness 2913) in paragraph at lines 38831--38835 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [555] [556] [557] [558] Underfull \hbox (badness 1072) in paragraph at lines 39077--39081 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39082--39086 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39122--39128 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39122--39128 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39122--39128 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39137--39144 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [559] [560] [561] [562] Underfull \hbox (badness 2644) in paragraph at lines 39372--39376 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 1158) in paragraph at lines 40900--40902 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \hbox (badness 1137) in paragraph at lines 41500--41506 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41518--41523 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [594] [595] Underfull \hbox (badness 1616) in paragraph at lines 41638--41643 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1472) in paragraph at lines 42184--42187 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [604] [605] [606] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42396. [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] Underfull \vbox (badness 10000) has occurred while \output is active [617] Underfull \hbox (badness 10000) in paragraph at lines 43135--43139 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [618] [619] [620] [621] [622] Underfull \hbox (badness 10000) in paragraph at lines 43494--43497 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [623] [624] [625] Underfull \hbox (badness 10000) in paragraph at lines 43678--43682 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [626] [627] [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 44326--44329 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] Underfull \hbox (badness 1990) in paragraph at lines 45242--45250 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45242--45250 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1014) in paragraph at lines 46679--46682 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [669] Underfull \hbox (badness 2401) in paragraph at lines 46812--46816 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [670] [671] Underfull \hbox (badness 3492) in paragraph at lines 46938--46940 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [672] Underfull \hbox (badness 2111) in paragraph at lines 47024--47029 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [673] [674] [675] [676] Underfull \hbox (badness 4001) in paragraph at lines 47272--47274 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 5417) in paragraph at lines 47673--47677 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [683] Underfull \hbox (badness 10000) in paragraph at lines 47734--47738 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [684]) (./compiler-pkg.tex Chapter 2. [685] [686] [687] [688]) (./datasets-pkg.tex Chapter 3. [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764]) (./grDevices-pkg.tex Chapter 4. [765] [766] [767] [768] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [778] [779] [780] [781] [782] [783] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [784] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [785] [786] [787] [788] [789] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [796] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [797] [798] [799] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823] [824] [825] Underfull \vbox (badness 10000) has occurred while \output is active [826] [827] [828] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [829] [830] [831] [832] [833] [834] [835] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [842] [843] [844] [845] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [846] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [847] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [848] [849] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [851] [852] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [853] [854] [855] [856] [857] [858] [859] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [860] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [861] [862] [863] [864] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [865] [866] [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [874] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [875] [876] [877] [878] [879] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [880] [881] [882] [883] [884]) (./graphics-pkg.tex Chapter 5. [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [922] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [957] [958] [959] [960] [961] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [962] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [963] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [964 ] [965 ] [966] [967] [968] [969] [970] [971] [972] [973] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [988 ] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1020] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1021] [1022] [1023] [1024]) (./grid-pkg.tex Chapter 6. [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1043] Underfull \vbox (badness 10000) has occurred while \output is active [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \vbox (badness 10000) has occurred while \output is active [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1106] [1107] [1108] [1109] [1110] [1111] [1112] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1113] [1114] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144]) (./methods-pkg.tex Chapter 7. [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] Underfull \vbox (badness 10000) has occurred while \output is active [1153] Underfull \vbox (badness 10000) has occurred while \output is active [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1171] [1172] [1173] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1174] [1175] [1176] [1177] [1178] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1179] [1180] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1181] [1182] [1183] [1184] [1185] [1186] [1187] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1195] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] Underfull \vbox (badness 10000) has occurred while \output is active [1213] Underfull \vbox (badness 10000) has occurred while \output is active [1214] [1215] [1216] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1217] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1218] [1219] [1220] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] [1234] [1235] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1236] [1237] [1238] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1239] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1240] [1241] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1281] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1282] [1283] [1284] [1285]) (./parallel-pkg.tex [1286] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1287] [1288] [1289] [1290] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1307] [1308] [1309]) (./splines-pkg.tex [1310] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324]) (./stats-pkg.tex Chapter 10. [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1377] [1378] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1424] [1425] [1426] [1427] [1428] Underfull \vbox (badness 10000) has occurred while \output is active [1429] [1430] [1431] Underfull \vbox (badness 10000) has occurred while \output is active [1432] [1433] [1434] [1435] [1436] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \vbox (badness 10000) has occurred while \output is active [1457] [1458] [1459] [1460] [1461] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1462] [1463] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1483] [1484] [1485] [1486] [1487] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1488] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1502] [1503] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1513] [1514] [1515] [1516] [1517] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1540] [1541] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1558] [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1590] [1591] Underfull \vbox (badness 10000) has occurred while \output is active [1592] Underfull \vbox (badness 10000) has occurred while \output is active [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1606] [1607] [1608] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Underfull \vbox (badness 10000) has occurred while \output is active [1609] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1685] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1710] [1711] [1712] [1713] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] Underfull \vbox (badness 10000) has occurred while \output is active [1737] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1738] [1739] [1740] [1741] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1742] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1744] [1745] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1746] [1747] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1748] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1749] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1750] [1751] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1769] [1770] [1771] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] Underfull \hbox (badness 1127) in paragraph at lines 30293--30296 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1780] [1781] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1801] [1802] [1803] [1804] [1805] [1806] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1815] [1816] [1817] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1818] [1819] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1820] [1821] [1822] [1823] [1824]) (./stats4-pkg.tex Chapter 11. [1825] [1826] [1827] Underfull \vbox (badness 10000) has occurred while \output is active [1828] [1829] [1830] [1831] [1832] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1833] [1834] [1835]) (./tcltk-pkg.tex [1836] Chapter 12. [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \vbox (badness 10000) has occurred while \output is active [1844] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856]) (./tools-pkg.tex Chapter 13. [1857] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1858] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1859] [1860] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [1861] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [1862] [1863] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1875] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1876] [1877] [1878] [1879] [1880] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [1881] [1882] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1883] [1884] [1885] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [1893] [1894] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1919] [1920] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [1927] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1928] [1929] [1930] [1931] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [1932] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1933] [1934] [1935]) (./utils-pkg.tex [1936] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [1948] [1949] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [1950] [1951] [1952] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] [1957] [1958] [1959] [1960] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [1971] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [1972] [1973] [1974] [1975] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [1995] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [1996] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2019] [2020] [2021] [2022] [2023] Underfull \hbox (badness 1448) in paragraph at lines 6017--6022 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 1371) in paragraph at lines 6565--6567 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2032] Underfull \hbox (badness 1502) in paragraph at lines 6654--6660 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6654--6660 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 6831--6840 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6831--6840 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2036] Underfull \hbox (badness 2150) in paragraph at lines 6893--6896 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2037] [2038] Underfull \hbox (badness 3118) in paragraph at lines 7032--7034 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2039] [2040] Underfull \hbox (badness 1325) in paragraph at lines 7211--7215 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2041] Underfull \hbox (badness 1424) in paragraph at lines 7303--7306 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2042] Underfull \hbox (badness 3219) in paragraph at lines 7375--7382 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7375--7382 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7375--7382 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7375--7382 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7383--7386 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2043] Underfull \hbox (badness 1024) in paragraph at lines 7512--7515 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2044] Underfull \hbox (badness 10000) in paragraph at lines 7545--7550 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2045] Underfull \hbox (badness 5133) in paragraph at lines 7604--7608 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 8268--8270 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 2310) in paragraph at lines 9055--9060 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1248) in paragraph at lines 9621--9625 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2076] Underfull \hbox (badness 1789) in paragraph at lines 9699--9701 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2077] [2078] [2079] [2080] Underfull \hbox (badness 2600) in paragraph at lines 9923--9926 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 1097) in paragraph at lines 10560--10563 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2089] [2090] Underfull \hbox (badness 3000) in paragraph at lines 10696--10701 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] Underfull \hbox (badness 2134) in paragraph at lines 11291--11296 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2099] Underfull \hbox (badness 10000) in paragraph at lines 11347--11352 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11347--11352 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 1824) in paragraph at lines 11845--11849 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2108] [2109] [2110] [2111] [2112] [2113] Underfull \hbox (badness 4060) in paragraph at lines 12290--12293 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12313--12313 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2114] [2115] [2116] [2117] Underfull \hbox (badness 2150) in paragraph at lines 12568--12570 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2118] [2119] [2120] Underfull \hbox (badness 10000) in paragraph at lines 12788--12792 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able [2121] Underfull \hbox (badness 10000) in paragraph at lines 12821--12827 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12836--12842 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2122] [2123] Underfull \hbox (badness 1009) in paragraph at lines 13011--13023 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2124] Underfull \hbox (badness 4779) in paragraph at lines 13051--13053 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13081--13088 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2125] [2126] [2127] [2128] [2129] [2130] Underfull \hbox (badness 3780) in paragraph at lines 13506--13512 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13524--13527 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2131] [2132] [2133] [2134] Underfull \hbox (badness 2302) in paragraph at lines 13734--13736 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2135] [2136] [2137] [2138] Underfull \hbox (badness 4441) in paragraph at lines 14033--14038 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14042--14045 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 2932) in paragraph at lines 14473--14480 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14473--14480 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2146] [2147] Underfull \hbox (badness 1460) in paragraph at lines 14637--14645 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used [2148] [2149] Underfull \hbox (badness 6510) in paragraph at lines 14783--14787 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14790--14793 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14790--14793 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] Underfull \hbox (badness 10000) in paragraph at lines 15463--15468 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15463--15468 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15469--15471 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2159] Underfull \hbox (badness 10000) in paragraph at lines 15528--15531 [][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download .packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][ ][]\T1/ptm/m/n/10 , [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174]) [2175] [2176] (./KernSmooth-pkg.tex Chapter 15. [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186]) (./MASS-pkg.tex Chapter 16. [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g lm}) has been already used, duplicate ignored \relax l.1479 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n ls}) has been already used, duplicate ignored \relax l.1480 ...{confint.nls}{confint-MASS}{confint.nls} [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] Underfull \hbox (badness 10000) in paragraph at lines 2785--2790 []\T1/zi4/m/sl/10 "geometric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "log-normal"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "lognormal"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "negative [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 2957--2959 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 1117) in paragraph at lines 4736--4739 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2253] Underfull \hbox (badness 1117) in paragraph at lines 4815--4818 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6082 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h as been already used, duplicate ignored \relax l.6082 ...sical N, P, K Factorial Experiment}{npk} [2271] [2272] [2273] [2274] [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] Underfull \hbox (badness 1117) in paragraph at lines 6983--6990 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2283] Underfull \hbox (badness 3138) in paragraph at lines 7054--7060 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2284] [2285] [2286] Underfull \hbox (badness 1910) in paragraph at lines 7233--7236 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/zi4/m/sl/10 min(p, [2287] [2288] [2289] [2290] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm}) has been already used, duplicate ignored \relax l.7510 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm.1}) has been already used, duplicate ignored \relax l.7510 ... for Profiling glm Objects}{profile.glm} [2291] [2292] [2293] [2294] Underfull \hbox (badness 4686) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331]) (./Matrix-pkg.tex [2332] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2333] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} [2335] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2336] [2337] [2338] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2339] [2340] Underfull \hbox (badness 2035) in paragraph at lines 590--593 []\T1/ptm/m/n/10 The value of []\T1/zi4/m/sl/10 bdiag() []\T1/ptm/m/n/10 in-her -its from class [][][]\T1/zi4/m/sl/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , whe reas []\T1/zi4/m/sl/10 .bdiag() []\T1/ptm/m/n/10 re-turns a [2341] [2342] [2343] Underfull \hbox (badness 5817) in paragraph at lines 913--916 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 BunchKaufmanFactorization[][][][]\ T1/ptm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][ ][]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 6758) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("BunchKaufman", ...) Underfull \hbox (badness 2961) in paragraph at lines 919--924 []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of [2344] [2345] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2346] [2347] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) has been already used, duplicate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2348] Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/zi4/m/sl/10 CHMfactor [] \T1/ptm/m/n/10 is based on CHOLMOD's C-level [2349] [2350] [2351] [2352] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} Underfull \hbox (badness 6220) in paragraph at lines 1656--1658 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2353] Underfull \hbox (badness 2334) in paragraph at lines 1730--1734 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 1730--1734 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2354] Underfull \vbox (badness 10000) has occurred while \output is active [2355] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol2inv} ) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2356] [2357] Underfull \hbox (badness 10000) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 CholeskyFactorization[][][][]\T1/p tm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\ T1/ptm/m/n/10 , by class Underfull \hbox (badness 7722) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1990) in paragraph at lines 2051--2060 []\T1/ptm/m/n/10 In \T1/ptm/b/n/10 Ma-trix []\T1/zi4/m/sl/10 < 1.6-0[]\T1/ptm/m /n/10 , class []\T1/zi4/m/sl/10 Cholesky []\T1/ptm/m/n/10 ex-tended [][][]\T1/z i4/m/sl/10 dtrMatrix[][][] []\T1/ptm/m/n/10 and class []\T1/zi4/m/sl/10 pCholes ky []\T1/ptm/m/n/10 ex-tended Underfull \hbox (badness 2334) in paragraph at lines 2066--2070 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2066--2070 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2358] [2359] Underfull \hbox (badness 6220) in paragraph at lines 2185--2187 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2360] [2361] Underfull \hbox (badness 2334) in paragraph at lines 2315--2319 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2315--2319 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2362] Underfull \vbox (badness 10000) has occurred while \output is active [2363] Underfull \vbox (badness 10000) has occurred while \output is active [2364] [2365] [2366] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans} ) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums}) has been already used, duplicate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans} ) has been already used, duplicate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums}) has been already used, duplicate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} [2367] [2368] [2369] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2370] [2371] [2372] [2373] [2374] [2375] Underfull \hbox (badness 1983) in paragraph at lines 3390--3398 []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unpackedMatrix[][][][]\T1/ptm/m/n/10 . Al-ter-na-tively into the (cur-rently) three sub-classes [][][]\T1/zi4/m/sl/ 10 ddenseMatrix[][][][]\T1/ptm/m/n/10 , [2376] [2377] [2378] [2379] Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2380] Underfull \hbox (badness 3417) in paragraph at lines 3828--3830 []\T1/zi4/m/sl/10 .sparseDiagonal() []\T1/ptm/m/n/10 ex-ists pri-mar-ily to lev er-age ef-fi-cient C-level meth-ods avail-able for [2381] [2382] Underfull \hbox (badness 8019) in paragraph at lines 3933--3935 []\T1/zi4/m/sl/10 signature(x = "nMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cally eq uiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [][][]\T1/zi4/m/sl/1 0 which[][][](x, Underfull \hbox (badness 10000) in paragraph at lines 3936--3940 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these g roup meth-ods re-turn a [2383] [2384] [2385] [2386] Underfull \hbox (badness 1902) in paragraph at lines 4263--4265 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) []\T1/ptm/m/n/10 is some-times prefer-able to (and more ef-fi-cient than) []\T1/zi4/m/sl/10 zapsmall(x, Underfull \hbox (badness 2020) in paragraph at lines 4300--4303 []\T1/ptm/m/n/10 a typ-i-cally sparse ma-trix; in-ter-nally co-erced to ei-ther []\T1/zi4/m/sl/10 "[][]dgCMatrix[][][]" []\T1/ptm/m/n/10 or [2387] [2388] [2389] Underfull \hbox (badness 4378) in paragraph at lines 4503--4512 []\T1/ptm/m/n/10 or [][][]\T1/zi4/m/sl/10 chol[][][]() []\T1/ptm/m/n/10 is typ- i-cally used, e.g., see []\T1/zi4/m/sl/10 selectMethod("coerce", c(from="dsyMat rix", [2390] [2391] [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [ ]\T1/zi4/m/sl/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/zi4/m/sl/10 "spa rseMatrix"[]\T1/ptm/m/n/10 , by classes [2394] Underfull \hbox (badness 4518) in paragraph at lines 4929--4932 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = Underfull \hbox (badness 3690) in paragraph at lines 4932--4935 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = [2395] [2396] Underfull \hbox (badness 2318) in paragraph at lines 5035--5039 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dgCMatrix"[]\T1/ptm/m/n/10 , di-rectl y. Class []\T1/zi4/m/sl/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Clas s []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , [2397] Underfull \hbox (badness 3240) in paragraph at lines 5151--5155 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/ n/10 : the [][][]\T1/zi4/m/sl/10 determinant[][][](x) [2398] [2399] [2400] [2401] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class [2402] Underfull \hbox (badness 10000) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/s l/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L)[]\T 1/ptm/m/n/10 . Underfull \hbox (badness 1776) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1"]] []\T1/ptm/m/n/10 rep-re-sent the same per-mu-ta-tion ma-trix Underfull \hbox (badness 10000) in paragraph at lines 5529--5544 []\T1/zi4/m/sl/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl /10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L, U, Q )[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(L, U, P)[]\ T1/ptm/m/n/10 . Underfull \hbox (badness 1142) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1."]] []\T1/ptm/m/n/10 are iden-ti-cal mod-ulo []\T1/zi4/m/sl/10 Dimna mes[]\T1/ptm/m/n/10 . The [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 1087) in paragraph at lines 5987--5993 []\T1/ptm/m/n/10 a string whose first three char-ac-ters spec-ify the class of the re-sult. It Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/zi4/m/sl/10 c("trace", "sumLog", "prod", "mi n", "max", "range", [2409] [2410] [2411] [2412] Underfull \hbox (badness 1931) in paragraph at lines 6262--6264 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the []\T1/zi4/m/sl/10 zero.print [] \T1/ptm/m/n/10 codes should be aligned, see [2413] [2414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h as been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2415] Underfull \hbox (badness 1005) in paragraph at lines 6476--6481 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. []\T1/zi4/m/sl/10 N A []\T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1189) in paragraph at lines 6476--6481 \T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 as by de-fault, []\ T1/zi4/m/sl/10 border.col <- if(lwd < .01) NA else NULL []\T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/zi4/m/sl/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use [2416] Overfull \hbox (42.75635pt too wide) in paragraph at lines 6545--6545 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2417] [2418] [2419] [2420] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of [2421] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite }) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini te}) has been already used, duplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h as been already used, duplicate ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) has been already used, duplicate ignored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2422] [2423] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr ic}) has been already used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2424] Overfull \hbox (26.39984pt too wide) in paragraph at lines 7124--7124 []\T1/zi4/m/sl/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$dou ble.eps, tol1 = 8 * tol, ...)[] [2425] [2426] [2427] Underfull \vbox (badness 10000) has occurred while \output is active [2428] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker }) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2429] [2430] [2431 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr ix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.7725 \item[\code{Dim},\code{Dimnames}:] The dimension (a length-2] Underfull \hbox (badness 2478) in paragraph at lines 7736--7741 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7744--7747 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 7968--7971 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2435] Underfull \hbox (badness 10000) in paragraph at lines 8029--8032 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2436] [2437] [2438] [2439] pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.* .Rpcent.}) has been already used, duplicate ignored \relax l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod }) has been already used, duplicate ignored \relax l.8384 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro d}) has been already used, duplicate ignored \relax l.8460 ...tcrossprod}{matmult-methods}{tcrossprod} [2440] Underfull \hbox (badness 10000) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 5359) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-t rix mul-ti-pli-ca-tion. Mul-ti-pli-ca-tion Underfull \hbox (badness 10000) in paragraph at lines 8627--8629 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 8629--8631 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an [2441] [2442] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8856 \aliasA{det}{Matrix-class}{det} [2443] Underfull \hbox (badness 1527) in paragraph at lines 8933--8935 []\T1/zi4/m/sl/10 signature(x = "Matrix")[]\T1/ptm/m/n/10 : sim-ply de-fined as []\T1/zi4/m/sl/10 prod(dim(x)) []\T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 8941--8944 []\T1/zi4/m/sl/10 signature(object = "Matrix")[]\T1/ptm/m/n/10 : draws an [][][ ]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 8946--8949 [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 9148--9150 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", logarithm = "missing")[] \T1/ptm/m/n/10 : sets Underfull \hbox (badness 10000) in paragraph at lines 9154--9156 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "NULL")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with Underfull \hbox (badness 10000) in paragraph at lines 9156--9158 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "list")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with [2447] Underfull \hbox (badness 10000) in paragraph at lines 9193--9196 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/zi4/m/sl/10 expand1[][][] []\T1/p tm/m/n/10 and [][][]\T1/zi4/m/sl/10 expand2[][][] []\T1/ptm/m/n/10 for con-stru ct-ing ma-trix fac-tors from [2448] Underfull \hbox (badness 10000) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/zi4/m/sl/10 X <- (X + t(X))/2 [ ]\T1/ptm/m/n/10 should be done, af-ter []\T1/zi4/m/sl/10 X <- [2449] [2450] Underfull \vbox (badness 10000) has occurred while \output is active [2451] Underfull \hbox (badness 2478) in paragraph at lines 9507--9512 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 9515--9518 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2452] [2453] Underfull \hbox (badness 5924) in paragraph at lines 9696--9698 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2454] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha s been already used, duplicate ignored \relax l.9738 \aliasA{norm}{norm-methods}{norm} [2455] [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 10031--10034 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2458] Underfull \hbox (badness 10000) in paragraph at lines 10095--10098 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2459] [2460] [2461] Underfull \hbox (badness 4242) in paragraph at lines 10295--10298 [][][]\T1/zi4/m/sl/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unp ack[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/zi4/m/sl/10 "[][] unpackedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2462] Underfull \hbox (badness 3547) in paragraph at lines 10383--10386 []\T1/zi4/m/sl/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and o th-ers listed by []\T1/zi4/m/sl/10 showMethods("%*%", [2463] [2464] [2465] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.10601 \aliasA{qr}{qr-methods}{qr} [2466] [2467] [2468] [2469] Underfull \hbox (badness 7186) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/zi4/m/sl/10 qr[][][](x, tol, [2470] [2471] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11002 \aliasA{rcond}{rcond-methods}{rcond} [2472] [2473] [2474] [2475] Underfull \hbox (badness 2351) in paragraph at lines 11284--11292 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1509) in paragraph at lines 11284--11292 \T1/ptm/m/n/10 in-dices, if not []\T1/zi4/m/sl/10 symmetric [][]sample.int[][][ ](nrow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/zi4/m/sl/10 rand.x []\T1/pt m/m/n/10 is not []\T1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 --- [2476] [2477] Underfull \hbox (badness 10000) in paragraph at lines 11441--11444 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 SchurFactorization[][][][]\T1/ptm/ m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\T1/ ptm/m/n/10 , by class [2478] [2479] [2480] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11630 \aliasA{solve}{solve-methods}{solve} [2481] Underfull \hbox (badness 5316) in paragraph at lines 11816--11821 []\T1/ptm/m/n/10 Methods for dense []\T1/zi4/m/sl/10 a []\T1/ptm/m/n/10 are bui lt on 14 LA-PACK rou-tines: class []\T1/zi4/m/sl/10 d..Matrix[]\T1/ptm/m/n/10 , where [2482] Underfull \hbox (badness 10000) in paragraph at lines 11916--11919 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2483] Underfull \hbox (badness 10000) in paragraph at lines 11952--11955 []\T1/ptm/m/n/10 character string or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 11963--11967 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 10000) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 (object = "sparseMatrix", uniqT=FALSE)[]\T1/ptm/m/n/10 : Re-t urns an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 "sparseSummary" []\T1/ptm/m/n/10 which is ba-si-cally a [][][ ]\T1/zi4/m/sl/10 data.frame[][][] []\T1/ptm/m/n/10 with columns []\T1/zi4/m/sl/ 10 (i,j,x) []\T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 signature(from = "factor", to = "sparseMatrix")[]\T1/ptm/m/n/ 10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 "sparseMatrix" []\T1/ptm/m/n/10 pro-duces the ma-trix of in-d i-ca-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 5036) in paragraph at lines 12918--12920 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2497] Underfull \hbox (badness 2828) in paragraph at lines 13084--13087 []\T1/zi4/m/sl/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m /n/10 co-erces sparse vec-tors to Underfull \hbox (badness 2486) in paragraph at lines 13106--13109 []\T1/zi4/m/sl/10 signature(x = "sparseVector") []\T1/ptm/m/n/10 re-peat []\T1/ zi4/m/sl/10 x[]\T1/ptm/m/n/10 , with the same ar-gu-ment list []\T1/zi4/m/sl/10 (x, times, [2498] [2499] [2500] [2501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash. }) has been already used, duplicate ignored \relax l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13398--13400 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2502] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b een already used, duplicate ignored \relax l.13445 \aliasA{[}{subscript-methods}{[} [2503] [2504] Underfull \hbox (badness 2057) in paragraph at lines 13656--13658 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 10000) in paragraph at lines 13670--13675 []\T1/zi4/m/sl/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-tri x, in-her-it-ing from [][][]\T1/zi4/m/sl/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2505] [2506] Underfull \hbox (badness 10000) in paragraph at lines 13826--13831 []\T1/ptm/m/n/10 Note that all []\T1/zi4/m/sl/10 new(.)[]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 spMatrix[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 spar seMatrix[][][](*, repr="T") []\T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 13832--13838 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as []\ T1/zi4/m/sl/10 %*% []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 crossprod []\T1/ptm/m /n/10 are de-fined [2507] [2508] [2509] Overfull \hbox (21.75807pt too wide) in paragraph at lines 14021--14027 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/zi4/m/sl/10 usc_q.GAL\T1/ptm/m/n/10 ' ( re-trieved in 2008 from `\T1/zi4/m/sl/10 http://sal.uiuc.edu/weights/zips/usc.z ip\T1/ptm/m/n/10 ' [2510] [2511] [2512]) (./boot-pkg.tex Chapter 18. [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2523] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2524] Underfull \vbox (badness 10000) has occurred while \output is active [2525] [2526] [2527] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2528] [2529] [2530] [2531] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2532] [2533] [2534] [2535] [2536] [2537] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are []\T1/zi4/m/sl/10 "ordinary" []\T1/ptm/m/n/10 (case re-sam-pling), [2538] [2539] Underfull \vbox (badness 10000) has occurred while \output is active [2540] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2541] [2542] [2543] [2544] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2545] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2546] [2547] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/zi4/m /sl/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 n []\T1/ptm/m/n /10 is the sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/zi4/m/sl/10 unbiased []\T1/ptm/m/n/10 is []\T1/zi 4/m/sl/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/zi4/m/sl/10 1/n [ ]\T1/ptm/m/n/10 is used. This is mul-ti-plied by [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] [2564] [2565] [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2582] [2583] [2584] [2585] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2586] [2587] [2588] [2589] [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/zi4/m/sl/10 " saddle.distn"[]\T1/ptm/m/n/10 . See the help file for [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613] [2614] [2615]) (./class-pkg.tex [2616] Chapter 19. [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632]) (./cluster-pkg.tex Chapter 20. [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Underfull \hbox (badness 1412) in paragraph at lines 782--787 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][][]\T1/zi4/m/sl/10 agnes[][][][] \T1/ptm/m/n/10 ), orig-i-nally. Met-ric []\T1/zi4/m/sl/10 "jaccard"[]\T1/ptm/m/ n/10 : Kamil Ko-zlowski [2645] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2646] [2647] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2648] [2649] [2650] [2651] [2652] [2653] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 [2654] [2655] Underfull \hbox (badness 2503) in paragraph at lines 1583--1586 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/1 0 or []\T1/zi4/m/sl/10 "twins"[]\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2656] Underfull \hbox (badness 4954) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/zi4/m/s l/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2657] Underfull \hbox (badness 7667) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/zi4/m/sl/10 integer[]\T1/ptm/m/n/10 ) columns of []\ T1/zi4/m/sl/10 x[]\T1/ptm/m/n/10 , aka []\T1/zi4/m/sl/10 "I" []\T1/ptm/m/n/10 i n re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2658] [2659] Overfull \hbox (5.24408pt too wide) in paragraph at lines 1866--1866 []\T1/zi4/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (11.23795pt too wide) in paragraph at lines 1877--1877 []\T1/zi4/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] [2660] [2661] [2662] [2663] [2664] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 10000) in paragraph at lines 2223--2229 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also th e [][][]\T1/zi4/m/sl/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/zi4/m/s l/10 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2665] [2666] [2667] [2668] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] Underfull \hbox (badness 2980) in paragraph at lines 3059--3063 [][][]\T1/zi4/m/sl/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-e nces; [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 daisy[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [2677] [2678] [2679] [2680] [2681] [2682] Underfull \hbox (badness 1142) in paragraph at lines 3398--3401 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2683] Underfull \hbox (badness 1142) in paragraph at lines 3517--3520 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2684] [2685] [2686] [2687] Underfull \hbox (badness 2582) in paragraph at lines 3740--3745 [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 clusplot .default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pam[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 clara[][][][]\T1/ptm/m/n/10 , [2688] Underfull \hbox (badness 2698) in paragraph at lines 3802--3807 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls []\T1/ zi4/m/sl/10 plot([][]as.hclust[][][](x), ...)[]\T1/ptm/m/n/10 , which Underfull \hbox (badness 4792) in paragraph at lines 3802--3807 \T1/ptm/m/n/10 dis-patches to [][][]\T1/zi4/m/sl/10 plot.hclust[][][](..)[]\T1/ ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/zi4/m/sl/10 x x <- [2689] Underfull \hbox (badness 10000) in paragraph at lines 3875--3877 []\T1/ptm/m/n/10 Available as `\T1/zi4/m/sl/10 pluton.dat\T1/ptm/m/n/10 ' from the archive of the Uni-ver-sity of Antwer-pen, [2690] [2691] [2692] Underfull \hbox (badness 10000) in paragraph at lines 4089--4091 []\T1/ptm/m/n/10 a []\T1/zi4/m/sl/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/zi4/m/sl/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2693] [2694] [2695] [2696] Underfull \hbox (badness 2626) in paragraph at lines 4318--4323 []\T1/ptm/m/n/10 arguments passed [][][]\T1/zi4/m/sl/10 barplot[][][]()[]\T1/pt m/m/n/10 ; note that the de-fault used to be []\T1/zi4/m/sl/10 col = [2697] Underfull \hbox (badness 1383) in paragraph at lines 4395--4400 []\T1/ptm/m/n/10 While []\T1/zi4/m/sl/10 silhouette() []\T1/ptm/m/n/10 is \T1/p tm/m/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][][]\T1/zi4/m/sl/10 partition[][ ][] []\T1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] Underfull \hbox (badness 10000) in paragraph at lines 4836--4838 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2706] [2707]) (./codetools-pkg.tex [2708] Chapter 21. [2709] [2710] [2711] [2712] [2713]) (./foreign-pkg.tex [2714] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2715] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2716] [2717] [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 5417) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/zi4/m/sl/10 "append" []\T1/ptm/m/n/10 (the de-fau lt), the first orig-i-nal value la-bel is Underfull \hbox (badness 6001) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/z i4/m/sl/10 paste0(label, [2723] Overfull \hbox (6.73795pt too wide) in paragraph at lines 620--620 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2724] [2725] [2726] Underfull \hbox (badness 10000) in paragraph at lines 808--809 [2727] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2728] [2729] Underfull \hbox (badness 10000) in paragraph at lines 986--988 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2730] [2731] [2732] [2733] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/zi4/m/sl/10 forei gn:::writeForeignStata[]\T1/ptm/m/n/10 , [2734] [2735]) (./lattice-pkg.tex [2736] Chapter 23. [2737] Underfull \hbox (badness 1484) in paragraph at lines 114--118 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/zi4/m/sl/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2738] [2739] [2740] Underfull \vbox (badness 10000) has occurred while \output is active [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] Underfull \hbox (badness 1062) in paragraph at lines 1395--1399 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2754] Underfull \vbox (badness 4805) has occurred while \output is active [2755] Underfull \hbox (badness 1803) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 Lattice[][][] []\T1/ptm/m/n/10 for an overview of the pac k-age, as well as [][][]\T1/zi4/m/sl/10 barchart.table[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.trellis[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 panel.superpose[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.loess[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.average[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/zi4/m/sl/10 strip.default[][][][]\T1/ptm/m/n/10 , [2756] [2757] Underfull \hbox (badness 3009) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/zi4/m/sl/10 xyplot[ ][][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2758] [2759] [2760] [2761] [2762] [2763] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fi ed, the value of [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] Underfull \vbox (badness 10000) has occurred while \output is active [2772] [2773] Underfull \hbox (badness 2781) in paragraph at lines 2871--2873 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the []\T1/zi4/m/sl/10 co l.regions []\T1/ptm/m/n/10 ar-gu-ment in [2774] Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2775] [2776] [2777] [2778] [2779] [2780] [2781] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel} ) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2782] [2783] Underfull \hbox (badness 2368) in paragraph at lines 3644--3644 []\T1/zi4/m/sl/10 auto.key[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 prepanel[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 scales[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 strip[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 groups[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 x lab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/1 0 ylab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[]\T1/ptm/m/n/10 , [2784] [2785] [2786] [2787] [2788] Underfull \hbox (badness 5696) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 by spec-i-fy-ing []\T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")[]\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2789] [2790] [2791] Underfull \hbox (badness 1389) in paragraph at lines 4175--4183 \T1/ptm/m/n/10 based on HCL palettes, but cus-tomiza-tion of the palettes is al -lowed. Ear-lier be-haviour [2792] Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2793] [2794] [2795] Underfull \hbox (badness 3492) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/zi4/m/sl/10 col []\T1/ptm/m/n /10 is used for com-po-nents []\T1/zi4/m/sl/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 p lot.symbol[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 and [2796] [2797] [2798] [2799] [2800] [2801] [2802] Underfull \vbox (badness 10000) has occurred while \output is active [2803] [2804] [2805] Underfull \hbox (badness 6157) in paragraph at lines 5232--5235 []\T1/zi4/m/sl/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gl es via rect-an-gles. []\T1/zi4/m/sl/10 print.shingle []\T1/ptm/m/n/10 and [2806] [2807] [2808] [2809] [2810] [2811] [2812] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5684--5687 []\T1/zi4/m/sl/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on th e left of pan-els us-ing [2813] [2814] [2815] [2816] [2817] Underfull \hbox (badness 4805) in paragraph at lines 6045--6049 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/zi4/m/sl/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , ex-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 6056--6063 []\T1/zi4/m/sl/10 panel.identify[]\T1/ptm/m/n/10 . For []\T1/zi4/m/sl/10 panel. identify[]\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 6056--6063 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For []\T1 /zi4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 trellis.switchFocus[]\T1/ptm/m/n/10 , th ese are used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 6056--6063 [][][]\T1/zi4/m/sl/10 lattice.options[][][][]\T1/ptm/m/n/10 ) for high-light-in g the cho-sen view-port if so re-quested. [2818] [2819] [2820] [2821] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6356--6361 \T1/ptm/m/n/10 ter []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 is used if t here is no group-ing vari-able, oth-er-wise [2822] [2823] Underfull \hbox (badness 2310) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/zi4/m/sl/10 x []\T1/ptm/ m/n/10 for ev-ery level of []\T1/zi4/m/sl/10 y []\T1/ptm/m/n/10 (or the other w ay round if [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 3168) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. Use [2836] [2837] [2838] [2839] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2840] [2841] [2842] Underfull \hbox (badness 3333) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 default colours are ob-tained from []\T1/zi4/m/sl/10 plot.symb ol []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 plot.line []\T1/ptm/m/n/10 us-ing Underfull \hbox (badness 2318) in paragraph at lines 7836--7844 []\T1/zi4/m/sl/10 "spline" []\T1/ptm/m/n/10 adds a cu-bic smooth-ing spline fit (same as [][][]\T1/zi4/m/sl/10 panel.spline[][][][]\T1/ptm/m/n/10 ). [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/zi4/m/sl/10 panel.supe rpose []\T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8924--8926 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 ([]\T1/zi4/m/sl/10 panel.superpose.2 []\T1/ptm/m/n/10 orig-i-n ally con- [2858] [2859] [2860] Underfull \hbox (badness 3895) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/zi4/m/sl/10 type []\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in Underfull \hbox (badness 6625) in paragraph at lines 9095--9095 []\T1/zi4/m/sl/10 perspective[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 distance[]\T1 /ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 zlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 scr een[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 R.mat[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/ 10 aspect[]\T1/ptm/m/n/10 , [2861] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2862] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2863] Underfull \hbox (badness 5908) in paragraph at lines 9283--9286 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by []\T1/zi4/m/sl/10 xscale .components.default []\T1/ptm/m/n/10 and [2864] [2865] [2866] [2867] Underfull \hbox (badness 2418) in paragraph at lines 9574--9578 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing []\T1/z i4/m/sl/10 left, right, left.name, right.name, [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 2310) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/zi4/m/sl/10 "Svansota"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Manchuria "[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "No. 475"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "Velvet"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 10023--10026 []\T1/ptm/m/n/10 Factor with 6 lev-els: []\T1/zi4/m/sl/10 "Grand Rapids"[]\T1/p tm/m/n/10 , []\T1/zi4/m/sl/10 "Duluth"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Uni versity Farm"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Morris"[]\T1/ptm/m/n/10 , [2875] [2876] [2877] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma} ) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2878] [2879] [2880] Underfull \hbox (badness 4144) in paragraph at lines 10473--10476 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10473--10476 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2881] [2882]) (./mgcv-pkg.tex Chapter 24. [2883] [2884] [2885] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2886] [2887] [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gamObject[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][] [][]predi ct.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.gam[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/ m/sl/10 gam.side[][][][]\T1/ptm/m/n/10 , [2890] [2891] [2892] [2893] [2894] [2895] Underfull \hbox (badness 1406) in paragraph at lines 704--705 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2896] [2897] Underfull \hbox (badness 1158) in paragraph at lines 814--816 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2898] Underfull \hbox (badness 1259) in paragraph at lines 877--878 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2899] Underfull \vbox (badness 10000) has occurred while \output is active [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1281) in paragraph at lines 1272--1273 []\T1/zi4/m/sl/10 deviance[]\T1/ptm/m/n/10 ,[]\T1/zi4/m/sl/10 martingale[]\T1/p tm/m/n/10 ,[]\T1/zi4/m/sl/10 score[]\T1/ptm/m/n/10 , or []\T1/zi4/m/sl/10 schoe nfeld []\T1/ptm/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2906] [2907] Underfull \vbox (badness 10000) has occurred while \output is active [2908] Underfull \vbox (badness 10000) has occurred while \output is active [2909] [2910] Underfull \vbox (badness 10000) has occurred while \output is active [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 1142) in paragraph at lines 2604--2608 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2929] Underfull \hbox (badness 1043) in paragraph at lines 2630--2636 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2930] [2931] [2932] [2933] [2934] [2935] Underfull \vbox (badness 10000) has occurred while \output is active [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/zi4/m/sl/10 gam []\T1/pt m/m/n/10 mod-els us-ing []\T1/zi4/m/sl/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (see [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] [2958] Underfull \hbox (badness 1184) in paragraph at lines 4358--4362 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] Underfull \hbox (badness 1142) in paragraph at lines 5081--5085 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2971] Underfull \hbox (badness 1231) in paragraph at lines 5185--5187 []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 per-forms poorly with bi-nary data, sin ce it uses PQL. It is bet-ter to use []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 wit h [2972] [2973] [2974] Underfull \vbox (badness 10000) has occurred while \output is active [2975] [2976] [2977] [2978] Underfull \hbox (badness 2181) in paragraph at lines 5626--5627 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \hbox (badness 10000) in paragraph at lines 6130--6131 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/zi4/m/sl/10 gam(. ..,fit=FALSE) []\T1/ptm/m/n/10 or [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] Underfull \hbox (badness 1142) in paragraph at lines 6715--6719 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2999] [3000] [3001] Underfull \vbox (badness 10000) has occurred while \output is active [3002] [3003] [3004] [3005] Underfull \hbox (badness 1087) in paragraph at lines 7087--7088 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 rho []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/1 0 theta []\T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this case, and if [3006] [3007] [3008] Underfull \vbox (badness 10000) has occurred while \output is active [3009] Underfull \vbox (badness 10000) has occurred while \output is active [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 1242) in paragraph at lines 8046--8047 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3022] Underfull \hbox (badness 1122) in paragraph at lines 8072--8073 []\T1/ptm/m/n/10 When us-ing [][][]\T1/zi4/m/sl/10 NCV[][][] []\T1/ptm/m/n/10 w ith [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 worth-while per-for-mance im-prove-ments are avail-able by set-ting [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 6001) in paragraph at lines 8785--8787 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] Underfull \vbox (badness 10000) has occurred while \output is active [3046] [3047] Underfull \hbox (badness 1038) in paragraph at lines 9533--9536 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/zi4/m/sl/10 Di m.pdIndot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 coef.pdIdnot[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9533--9536 []\T1/zi4/m/sl/10 logDet.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdConstruc t.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdIdnot[]\T1/ptm/m/n/10 , [3048] Underfull \hbox (badness 10000) in paragraph at lines 9589--9592 []\T1/ptm/m/n/10 These func-tions ([]\T1/zi4/m/sl/10 pdTens[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/sl/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFacto r.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] Underfull \hbox (badness 1852) in paragraph at lines 10261--10264 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3060] [3061] [3062] Underfull \hbox (badness 1852) in paragraph at lines 10430--10433 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3063] [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] Underfull \hbox (badness 1205) in paragraph at lines 10670--10671 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10670--10671 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10676--10681 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3067] Underfull \hbox (badness 1205) in paragraph at lines 10760--10761 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10760--10761 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3068] [3069] [3070] Underfull \hbox (badness 1253) in paragraph at lines 10959--10961 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3071] [3072] [3073] [3074] [3075] [3076] Underfull \hbox (badness 4792) in paragraph at lines 11220--11223 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/zi4/m/s l/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/zi4/m/sl/10 gam[][][] []\ T1/ptm/m/n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 11220--11223 \T1/ptm/m/n/10 see [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 . If smooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3077] Underfull \hbox (badness 10000) in paragraph at lines 11327--11330 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/zi4/m/sl /10 "deviance"[]\T1/ptm/m/n/10 , [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 3861) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [3092] [3093] Underfull \hbox (badness 1320) in paragraph at lines 12233--12238 \T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 b.orig = D*b.repara []\T1/ptm/m/n/10 (wher e []\T1/zi4/m/sl/10 b.orig []\T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec- tor). If ma- [3094] Underfull \hbox (badness 1975) in paragraph at lines 12339--12344 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3095] [3096] Underfull \hbox (badness 1762) in paragraph at lines 12428--12440 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][][]\T1/zi4/m/sl/10 tprs[][][] []\T1/ptm/m/n/10 ); []\T1/zi4/m/sl/10 ts.smooth.spec []\T1/ptm/m/n/10 (thin pla te re-gres-sion splines with [3097] [3098] [3099] Underfull \hbox (badness 7667) in paragraph at lines 12640--12646 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of o ne or two vari-ables, spec-i-fied via terms like [3100] Underfull \hbox (badness 10000) in paragraph at lines 12681--12682 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] Underfull \hbox (badness 10000) in paragraph at lines 12958--12960 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3106] [3107] Underfull \hbox (badness 10000) in paragraph at lines 13088--13089 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3108] [3109] [3110] Underfull \hbox (badness 1436) in paragraph at lines 13224--13231 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 only al-lows one [3111] [3112] Underfull \hbox (badness 10000) in paragraph at lines 13323--13324 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] Underfull \hbox (badness 10000) in paragraph at lines 13924--13930 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13924--13930 []\T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 for-mula. Note [3123] [3124] [3125] Underfull \vbox (badness 10000) has occurred while \output is active [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] Underfull \hbox (badness 10000) in paragraph at lines 14268--14269 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3129] [3130] [3131] [3132] Overfull \hbox (35.26862pt too wide) in paragraph at lines 14480--14480 []\T1/zi4/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3133] [3134] Underfull \hbox (badness 3895) in paragraph at lines 14626--14629 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of a ny num-ber of vari-ables, spec-i-fied via terms like [3135] Underfull \hbox (badness 10000) in paragraph at lines 14671--14673 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3136] [3137] [3138] [3139] [3140] Underfull \hbox (badness 1371) in paragraph at lines 14951--14957 []\T1/zi4/m/sl/10 bs="ad" []\T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-ti ve smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14962--14964 []\T1/zi4/m/sl/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see Underfull \hbox (badness 1132) in paragraph at lines 14962--14964 [][][]\T1/zi4/m/sl/10 smooth.construct.fs.smooth.spec[][][][]\T1/ptm/m/n/10 ) i s avail-able for the case in which a smooth is [3141] Underfull \hbox (badness 6461) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Duchon.spline[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cubic.regression.spline[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/sl/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4 /m/sl/10 d.spline[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 soap[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Spherical.Spline[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][][]\T1/ptm/m/n/10 , [3142] [3143] [3144] [3145] Underfull \hbox (badness 2326) in paragraph at lines 15200--15207 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][][]\T1/zi4/m/sl/10 smooth.construct[][][] []\T1/ptm/m/n/10 and [3146] Underfull \hbox (badness 2158) in paragraph at lines 15285--15285 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] Underfull \vbox (badness 10000) has occurred while \output is active [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] Overfull \hbox (21.42029pt too wide) in paragraph at lines 16847--16847 []\T1/zi4/m/sl/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL ,unconditional=FALSE, ...)[] [3172] [3173] [3174] Underfull \hbox (badness 1796) in paragraph at lines 16960--16963 []\T1/ptm/m/n/10 other op-tions to pass on to [][][]\T1/zi4/m/sl/10 persp[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 or [][][] \T1/zi4/m/sl/10 contour[][][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183]) (./nlme-pkg.tex [3184] Chapter 25. [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] Underfull \hbox (badness 10000) in paragraph at lines 2251--2257 [][][]\T1/zi4/m/sl/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cor ARMA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.corMatrix .corCompSymm}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.3185 ] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] Underfull \hbox (badness 1067) in paragraph at lines 4410--4415 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] Underfull \hbox (badness 10000) in paragraph at lines 5156--5160 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/sl/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 getCovariate.varFunc[][][][]\T1/ptm/m/n/10 , [3264] [3265] [3266] [3267] [3268] [3269] [3270] Underfull \hbox (badness 10000) in paragraph at lines 5588--5591 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroups.lmList[][][][]\ T1/ptm/m/n/10 , [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 10000) in paragraph at lines 5969--5974 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 getGroupsFormula.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroupsFormula.lme[][][][]\T1/ptm/m/n/10 , [3278] [3279] [3280] [3281] Underfull \hbox (badness 1490) in paragraph at lines 6244--6255 [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsObject[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.gls[] [][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 qqnorm.gls[][][][]\T1/ptm/m/n/10 , [3282] Underfull \hbox (badness 10000) in paragraph at lines 6308--6310 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3283] [3284] [3285] [3286] [3287] [3288] Underfull \hbox (badness 10000) in paragraph at lines 6717--6719 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3289] [3290] [3291] [3292] Underfull \hbox (badness 10000) in paragraph at lines 6988--6995 [][][]\T1/zi4/m/sl/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gap ply[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gsummary[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plo t.nffGroupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.nfnGroupedD ata[][][][]\T1/ptm/m/n/10 , [3293] [3294] [3295] [3296] Underfull \hbox (badness 10000) in paragraph at lines 7248--7253 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 In itialize.glsStruct[][][][]\T1/ptm/m/n/10 , [3297] [3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] Underfull \hbox (badness 10000) in paragraph at lines 8530--8532 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3316] [3317] [3318] [3319] [3320] Underfull \hbox (badness 10000) in paragraph at lines 8815--8822 [][][]\T1/zi4/m/sl/10 lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lme.lmLi st[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.lmList[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 pooledSD[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 predict.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 residuals.lmLi st[][][][]\T1/ptm/m/n/10 , [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 10000) in paragraph at lines 9336--9343 [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/zi4/m/sl/10 gls[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik.corStruct[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik .lmList[][][][]\T1/ptm/m/n/10 , [3329] [3330] [3331] [3332] [3333] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9698 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1} ) has been already used, duplicate ignored \relax l.9698 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343] [3344] [3345] Underfull \hbox (badness 1596) in paragraph at lines 10475--10501 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3346] [3347] Underfull \hbox (badness 1490) in paragraph at lines 10591--10597 [][][]\T1/zi4/m/sl/10 nlmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlme.nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlmeObject[][][][]\ T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 nlmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pdClasses [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 reStruct[][][][]\T1/ptm/m/n/10 , [3348] [3349] [3350] Underfull \hbox (badness 10000) in paragraph at lines 10832--10834 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] Underfull \hbox (badness 1286) in paragraph at lines 13735--13742 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/zi4/m/ sl/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/zi4/m/sl/10 inner []\T1/ptm/m/n/1 0 or [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects}) has been already used, duplicate ignored \relax l.15178 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects.1}) has been already used, duplicate ignored \relax l.15178 ...Extract Random Effects}{random.effects} [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423] [3424] Underfull \hbox (badness 3884) in paragraph at lines 15817--15821 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15817--15821 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15817--15821 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ sl/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3425] [3426] Underfull \hbox (badness 1067) in paragraph at lines 15929--15934 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3427] [3428] [3429] [3430] Underfull \hbox (badness 1448) in paragraph at lines 16172--16181 \T1/ptm/m/n/10 Op-tions in-clude []\T1/zi4/m/sl/10 "response" []\T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] Underfull \hbox (badness 1728) in paragraph at lines 16876--16879 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3441] [3442] [3443] [3444] [3445] Underfull \hbox (badness 8056) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 Symmetry" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdCompSymm[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Diagonal" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl /10 pdDiag[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 an Identity" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdIdent[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite, Natural Underfull \hbox (badness 5756) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 Parametrization" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdNatur al[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite" []\T1/ptm/m/ n/10 for [3446] [3447] [3448] [3449] [3450] Underfull \hbox (badness 10000) in paragraph at lines 17532--17540 [][][]\T1/zi4/m/sl/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 var ConstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varConstProp[][][][]\T 1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varIdent[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varPower[][][][]\T1/ptm/m/n/10 , [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] Underfull \hbox (badness 10000) in paragraph at lines 18242--18252 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram .corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corRatio[][][][ ]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18242--18252 [][][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Variogram.corSpher[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Vari ogram.default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.gls[][][] []\T1/ptm/m/n/10 , [3461] [3462] [3463] [3464] [3465] Underfull \hbox (badness 5036) in paragraph at lines 18566--18575 [][][]\T1/zi4/m/sl/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.default[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom. 1}) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3479] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [3480] [3481] [3482] [3483] [3484] [3485] [3486]) (./rpart-pkg.tex Chapter 27. [3487] [3488] [3489] [3490] [3491] [3492] [3493] [3494] [3495] [3496] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , adds to the la-bel Underfull \hbox (badness 1348) in paragraph at lines 771--775 \T1/zi4/m/sl/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method []\T1/zi4/m/sl/10 class[]\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 for [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]) (./spatial-pkg.tex [3516] Chapter 28. [3517] [3518] [3519] [3520] [3521] [3522] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535]) (./survival-pkg.tex [3536] Chapter 29. [3537] [3538] [3539] [3540] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3541] [3542] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h as been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3555] [3556] [3557] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3558] Underfull \hbox (badness 3679) in paragraph at lines 1455--1459 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by []\T1/zi4/m/sl/10 table(colon$nodes, [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] Underfull \hbox (badness 3250) in paragraph at lines 2143--2158 \T1/ptm/m/n/10 ing guides and prepend []\T1/zi4/m/sl/10 survival:: []\T1/ptm/m/ n/10 onto ev-er-thing, in-clud-ing the spe-cial terms, e.g., Underfull \hbox (badness 10000) in paragraph at lines 2143--2158 []\T1/zi4/m/sl/10 survival::coxph(survival:Surv(time, status) ~ age + survival: :cluster(inst), [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] Underfull \hbox (badness 1389) in paragraph at lines 3661--3663 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3591] [3592] [3593] [3594] Overfull \hbox (467.89665pt too wide) in alignment at lines 3947--3947 [] [] [3595] [3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606] [3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] [3618] [3619] [3620] Underfull \hbox (badness 5274) in paragraph at lines 5694--5696 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "summary.survfit"[]\T1/p tm/m/n/10 , which is the re-sult of the [3621] [3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631] [3632] [3633] [3634] [3635] [3636] [3637] [3638] Underfull \hbox (badness 1281) in paragraph at lines 6962--6965 []\T1/ptm/m/n/10 type of resid-u-als, with choices of []\T1/zi4/m/sl/10 "respon se"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "deviance"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "dfbeta"[]\T1/ptm/m/n/10 , [3639] [3640] [3641] [3642] [3643] [3644] [3645] [3646] [3647] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7545 ...ata from a soldering experiment}{solder} [3648] [3649] [3650] [3651] [3652] [3653] [3654] [3655] [3656] [3657] [3658] [3659] [3660] [3661] [3662] [3663] [3664] [3665] [3666] [3667] [3668] [3669] Underfull \hbox (badness 1038) in paragraph at lines 9152--9158 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3670] [3671] [3672] [3673] [3674] Underfull \hbox (badness 10000) in paragraph at lines 9510--9515 [][][]\T1/zi4/m/sl/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 survfit.object [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][][]\T1/ptm/m/n/10 , [3675] [3676] [3677] [3678] [3679] Underfull \hbox (badness 4441) in paragraph at lines 9903--9913 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3680] [3681] Underfull \hbox (badness 1490) in paragraph at lines 10078--10087 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] []\T1/ptm/m/n/10 for sur-vival curves from Cox mod-els, [][][]\T1/zi4/m/sl/10 survfit.object[][][] []\T1/ptm/m/n/10 for a de-scrip-tion Underfull \hbox (badness 2213) in paragraph at lines 10078--10087 \T1/ptm/m/n/10 of the com-po-nents of a surv-fit ob-ject, [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lines.survfit[][][][]\T1/ptm/m/n/10 , [3682] [3683] [3684] [3685] [3686] [3687] [3688] Underfull \hbox (badness 1354) in paragraph at lines 10580--10584 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3689] [3690] [3691] [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] [3700] [3701] [3702] [3703] [3704] [3705] [3706] [3707] [3708] [3709] [3710] [3711] [3712]) (./fullrefman.ind [3713] [3714] [3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723] [3724] [3725] [3726] [3727] [3728] [3729] [3730] [3731] [3732] [3733] [3734] [3735] [3736] [3737] [3738] [3739] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2898--2900 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3740] [3741] [3742] [3743] [3744] [3745] [3746] Overfull \hbox (8.3567pt too wide) in paragraph at lines 3550--3552 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3747] [3748] [3749] [3750] [3751] [3752] [3753] [3754] [3755] [3756] [3757] Overfull \hbox (5.8567pt too wide) in paragraph at lines 4958--4960 []\T1/zi4/m/it/10 [,Matrix,lMatrix,missing,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 4960--4962 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wide) in paragraph at lines 5500--5502 []\T1/zi4/m/it/10 %&%,RsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5502--5504 []\T1/zi4/m/it/10 %&%,RsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5506--5508 []\T1/zi4/m/it/10 %&%,RsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5512--5514 []\T1/zi4/m/it/10 %&%,TsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5514--5516 []\T1/zi4/m/it/10 %&%,TsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5516--5518 []\T1/zi4/m/it/10 %&%,TsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5520--5522 []\T1/zi4/m/it/10 %&%,TsparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5540--5542 []\T1/zi4/m/it/10 %&%,diagonalMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5542--5544 []\T1/zi4/m/it/10 %&%,diagonalMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5544--5546 []\T1/zi4/m/it/10 %&%,diagonalMatrix,TsparseMatrix-method [3762] Overfull \hbox (10.8567pt too wide) in paragraph at lines 5548--5550 []\T1/zi4/m/it/10 %&%,diagonalMatrix,diagonalMatrix-method [3763] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5818--5820 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3764] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5971--5973 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3765] Overfull \hbox (10.8567pt too wide) in paragraph at lines 6224--6226 []\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 6232--6234 []\T1/zi4/m/it/10 Arith,ddenseMatrix,sparseVector-method [3766] Overfull \hbox (10.8567pt too wide) in paragraph at lines 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(15.01662pt too wide) in paragraph at lines 7037--7039 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3770] [3771] [3772] [3773] [3774] [3775] [3776] [3777] Overfull \hbox (30.8567pt too wide) in paragraph at lines 8540--8542 []\T1/zi4/m/it/10 coerce,diagonalMatrix,symmetricMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 8542--8544 []\T1/zi4/m/it/10 coerce,diagonalMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8562--8564 []\T1/zi4/m/it/10 coerce,generalMatrix,packedMatrix-method [3778] [3779] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8708--8710 []\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8716--8718 []\T1/zi4/m/it/10 coerce,matrix.coo,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8720--8722 []\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method Overfull 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coerce,sparseVector,TsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8792--8794 []\T1/zi4/m/it/10 coerce,sparseVector,unpackedMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8794--8796 []\T1/zi4/m/it/10 coerce,sparseVector,zsparseVector-method [3780] Overfull \hbox (20.8567pt too wide) in paragraph at lines 8968--8970 []\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method [3781] Overfull \hbox (40.8567pt too wide) in paragraph at lines 9000--9002 []\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method [3782] [3783] Overfull \hbox (30.8567pt too wide) in paragraph at lines 9536--9538 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9538--9540 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,denseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9540--9542 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method Overfull \hbox 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crossprod,denseMatrix,TsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9568--9570 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9570--9572 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,denseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9572--9574 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9574--9576 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method [3784] Overfull \hbox (5.8567pt too wide) in paragraph at lines 9576--9578 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9578--9580 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,RsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9580--9582 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9582--9584 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,vector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9598--9600 []\T1/zi4/m/it/10 crossprod,matrix,diagonalMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9620--9622 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9622--9624 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,denseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9624--9626 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9628--9630 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9630--9632 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,RsparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9632--9634 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,TsparseMatrix-method 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crossprod,vector,diagonalMatrix-method [3785] Overfull \hbox (15.01662pt too wide) in paragraph at lines 9715--9717 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9779--9781 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9784--9786 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9793--9795 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3786] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10154--10156 []\T1/zi4/m/it/10 determinant,BunchKaufman,logical-method [3787] Overfull \hbox (15.8567pt too wide) in paragraph at lines 10170--10172 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull 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\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3791] [3792] [3793] [3794] [3795] Overfull \hbox (35.8567pt too wide) in paragraph at lines 11914--11916 []\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,character-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 11916--11918 []\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,missing-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 11918--11920 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,character-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 11920--11922 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,missing-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 11922--11924 []\T1/zi4/m/it/10 forceSymmetric,diagonalMatrix,character-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 11924--11926 []\T1/zi4/m/it/10 forceSymmetric,diagonalMatrix,missing-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 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First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [211] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [212] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [213] [214] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [215] Underfull \vbox (badness 1418) has occurred while \output is active [216] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [217] [218] [219] [220] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [229] [230] [231] [232] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [233] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [234] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [245] [246] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [247] [248] [249] [250] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [251] [252] [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] Underfull \vbox (badness 10000) has occurred while \output is active [261] Underfull \vbox (badness 10000) has occurred while \output is active [262] [263] [264] [265] [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [285] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [292] [293] [294] [295] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [313] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , [314] Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [315] [316] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [329] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [366] [367] [368] [369] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [370] [371] [372] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [379] [380] [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [388] [389] [390] [391] [392] [393] [394] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [395] [396] [397] [398] [399] [400] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [401] Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [402] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [403] Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [407] Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [413] [414] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [415] [416] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \vbox (badness 10000) has occurred while \output is active [449] [450] [451] [452] [453] [454] [455] [456] Underfull \hbox (badness 1533) in paragraph at lines 31986--31989 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [457] [458] [459] Underfull \hbox (badness 1163) in paragraph at lines 32157--32168 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [460] [461] [462] [463] [464] [465] [466] [467] Underfull \hbox (badness 6300) in paragraph at lines 32703--32705 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] Underfull \hbox (badness 10000) in paragraph at lines 33826--33830 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33826--33830 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33847--33849 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33850--33854 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [484] [485] [486] [487] [488] [489] [490] [491] [492] Underfull \hbox (badness 1655) in paragraph at lines 34452--34454 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 2261) in paragraph at lines 35655--35660 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] Underfull \hbox (badness 3668) in paragraph at lines 36690--36694 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [525] Underfull \hbox (badness 10000) in paragraph at lines 36781--36792 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 38413--38415 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [550] [551] [552] [553] [554] Underfull \hbox (badness 2913) in paragraph at lines 38831--38835 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [555] [556] [557] [558] Underfull \hbox (badness 1072) in paragraph at lines 39077--39081 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39082--39086 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39122--39128 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39122--39128 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39122--39128 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39137--39144 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39137--39144 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [559] [560] [561] [562] Underfull \hbox (badness 2644) in paragraph at lines 39372--39376 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 1158) in paragraph at lines 40900--40902 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \hbox (badness 1137) in paragraph at lines 41500--41506 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41518--41523 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [594] [595] Underfull \hbox (badness 1616) in paragraph at lines 41638--41643 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1472) in paragraph at lines 42184--42187 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [604] [605] [606] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42396. [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] Underfull \vbox (badness 10000) has occurred while \output is active [617] Underfull \hbox (badness 10000) in paragraph at lines 43135--43139 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [618] [619] [620] [621] [622] Underfull \hbox (badness 10000) in paragraph at lines 43494--43497 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [623] [624] [625] Underfull \hbox (badness 10000) in paragraph at lines 43678--43682 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [626] [627] [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 44326--44329 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] Underfull \hbox (badness 1990) in paragraph at lines 45242--45250 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45242--45250 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1014) in paragraph at lines 46679--46682 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [669] Underfull \hbox (badness 2401) in paragraph at lines 46812--46816 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [670] [671] Underfull \hbox (badness 3492) in paragraph at lines 46938--46940 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [672] Underfull \hbox (badness 2111) in paragraph at lines 47024--47029 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [673] [674] [675] [676] Underfull \hbox (badness 4001) in paragraph at lines 47272--47274 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 5417) in paragraph at lines 47673--47677 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [683] Underfull \hbox (badness 10000) in paragraph at lines 47734--47738 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [684]) (./compiler-pkg.tex Chapter 2. [685] [686] [687] [688]) (./datasets-pkg.tex Chapter 3. [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764]) (./grDevices-pkg.tex Chapter 4. [765] [766] [767] [768] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [778] [779] [780] [781] [782] [783] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [784] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [785] [786] [787] [788] [789] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [796] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [797] [798] [799] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823] [824] [825] Underfull \vbox (badness 10000) has occurred while \output is active [826] [827] [828] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [829] [830] [831] [832] [833] [834] [835] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [842] [843] [844] [845] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [846] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [847] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [848] [849] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [851] [852] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [853] [854] [855] [856] [857] [858] [859] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [860] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [861] [862] [863] [864] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [865] [866] [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [874] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [875] [876] [877] [878] [879] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [880] [881] [882] [883] [884]) (./graphics-pkg.tex Chapter 5. [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [922] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [957] [958] [959] [960] [961] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [962] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [963] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [964 ] [965 ] [966] [967] [968] [969] [970] [971] [972] [973] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [988 ] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1020] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1021] [1022] [1023] [1024]) (./grid-pkg.tex Chapter 6. [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1043] Underfull \vbox (badness 10000) has occurred while \output is active [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \vbox (badness 10000) has occurred while \output is active [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1106] [1107] [1108] [1109] [1110] [1111] [1112] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1113] [1114] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144]) (./methods-pkg.tex Chapter 7. [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] Underfull \vbox (badness 10000) has occurred while \output is active [1153] Underfull \vbox (badness 10000) has occurred while \output is active [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1171] [1172] [1173] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1174] [1175] [1176] [1177] [1178] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1179] [1180] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1181] [1182] [1183] [1184] [1185] [1186] [1187] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1195] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] Underfull \vbox (badness 10000) has occurred while \output is active [1213] Underfull \vbox (badness 10000) has occurred while \output is active [1214] [1215] [1216] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1217] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1218] [1219] [1220] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] [1234] [1235] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1236] [1237] [1238] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1239] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1240] [1241] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1281] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1282] [1283] [1284] [1285]) (./parallel-pkg.tex [1286] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1287] [1288] [1289] [1290] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1307] [1308] [1309]) (./splines-pkg.tex [1310] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324]) (./stats-pkg.tex Chapter 10. [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1377] [1378] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1424] [1425] [1426] [1427] [1428] Underfull \vbox (badness 10000) has occurred while \output is active [1429] [1430] [1431] Underfull \vbox (badness 10000) has occurred while \output is active [1432] [1433] [1434] [1435] [1436] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \vbox (badness 10000) has occurred while \output is active [1457] [1458] [1459] [1460] [1461] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1462] [1463] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1483] [1484] [1485] [1486] [1487] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1488] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1502] [1503] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1513] [1514] [1515] [1516] [1517] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1540] [1541] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1558] [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1590] [1591] Underfull \vbox (badness 10000) has occurred while \output is active [1592] Underfull \vbox (badness 10000) has occurred while \output is active [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1606] [1607] [1608] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Underfull \vbox (badness 10000) has occurred while \output is active [1609] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1685] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1710] [1711] [1712] [1713] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] Underfull \vbox (badness 10000) has occurred while \output is active [1737] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1738] [1739] [1740] [1741] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1742] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1744] [1745] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1746] [1747] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1748] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1749] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1750] [1751] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1769] [1770] [1771] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] Underfull \hbox (badness 1127) in paragraph at lines 30293--30296 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1780] [1781] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1801] [1802] [1803] [1804] [1805] [1806] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1815] [1816] [1817] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1818] [1819] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1820] [1821] [1822] [1823] [1824]) (./stats4-pkg.tex Chapter 11. [1825] [1826] [1827] Underfull \vbox (badness 10000) has occurred while \output is active [1828] [1829] [1830] [1831] [1832] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1833] [1834] [1835]) (./tcltk-pkg.tex [1836] Chapter 12. [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \vbox (badness 10000) has occurred while \output is active [1844] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856]) (./tools-pkg.tex Chapter 13. [1857] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1858] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1859] [1860] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [1861] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [1862] [1863] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1875] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1876] [1877] [1878] [1879] [1880] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [1881] [1882] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1883] [1884] [1885] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [1893] [1894] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1919] [1920] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [1927] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1928] [1929] [1930] [1931] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [1932] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1933] [1934] [1935]) (./utils-pkg.tex [1936] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [1948] [1949] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [1950] [1951] [1952] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] [1957] [1958] [1959] [1960] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [1971] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [1972] [1973] [1974] [1975] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [1995] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [1996] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2019] [2020] [2021] [2022] [2023] Underfull \hbox (badness 1448) in paragraph at lines 6017--6022 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 1371) in paragraph at lines 6565--6567 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2032] Underfull \hbox (badness 1502) in paragraph at lines 6654--6660 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6654--6660 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 6831--6840 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6831--6840 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2036] Underfull \hbox (badness 2150) in paragraph at lines 6893--6896 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2037] [2038] Underfull \hbox (badness 3118) in paragraph at lines 7032--7034 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2039] [2040] Underfull \hbox (badness 1325) in paragraph at lines 7211--7215 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2041] Underfull \hbox (badness 1424) in paragraph at lines 7303--7306 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2042] Underfull \hbox (badness 3219) in paragraph at lines 7375--7382 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7375--7382 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7375--7382 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7375--7382 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7383--7386 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2043] Underfull \hbox (badness 1024) in paragraph at lines 7512--7515 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2044] Underfull \hbox (badness 10000) in paragraph at lines 7545--7550 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2045] Underfull \hbox (badness 5133) in paragraph at lines 7604--7608 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 8268--8270 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 2310) in paragraph at lines 9055--9060 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1248) in paragraph at lines 9621--9625 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2076] Underfull \hbox (badness 1789) in paragraph at lines 9699--9701 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2077] [2078] [2079] [2080] Underfull \hbox (badness 2600) in paragraph at lines 9923--9926 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 1097) in paragraph at lines 10560--10563 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2089] [2090] Underfull \hbox (badness 3000) in paragraph at lines 10696--10701 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] Underfull \hbox (badness 2134) in paragraph at lines 11291--11296 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2099] Underfull \hbox (badness 10000) in paragraph at lines 11347--11352 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11347--11352 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 1824) in paragraph at lines 11845--11849 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2108] [2109] [2110] [2111] [2112] [2113] Underfull \hbox (badness 4060) in paragraph at lines 12290--12293 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12313--12313 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2114] [2115] [2116] [2117] Underfull \hbox (badness 2150) in paragraph at lines 12568--12570 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2118] [2119] [2120] Underfull \hbox (badness 10000) in paragraph at lines 12788--12792 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able [2121] Underfull \hbox (badness 10000) in paragraph at lines 12821--12827 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12836--12842 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2122] [2123] Underfull \hbox (badness 1009) in paragraph at lines 13011--13023 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2124] Underfull \hbox (badness 4779) in paragraph at lines 13051--13053 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13081--13088 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2125] [2126] [2127] [2128] [2129] [2130] Underfull \hbox (badness 3780) in paragraph at lines 13506--13512 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13524--13527 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2131] [2132] [2133] [2134] Underfull \hbox (badness 2302) in paragraph at lines 13734--13736 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2135] [2136] [2137] [2138] Underfull \hbox (badness 4441) in paragraph at lines 14033--14038 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14042--14045 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 2932) in paragraph at lines 14473--14480 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14473--14480 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2146] [2147] Underfull \hbox (badness 1460) in paragraph at lines 14637--14645 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used [2148] [2149] Underfull \hbox (badness 6510) in paragraph at lines 14783--14787 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14790--14793 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14790--14793 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] Underfull \hbox (badness 10000) in paragraph at lines 15463--15468 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15463--15468 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15469--15471 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2159] Underfull \hbox (badness 10000) in paragraph at lines 15528--15531 [][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download .packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][ ][]\T1/ptm/m/n/10 , [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174]) [2175] [2176] (./KernSmooth-pkg.tex Chapter 15. [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186]) (./MASS-pkg.tex Chapter 16. [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g lm}) has been already used, duplicate ignored \relax l.1479 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n ls}) has been already used, duplicate ignored \relax l.1480 ...{confint.nls}{confint-MASS}{confint.nls} [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] Underfull \hbox (badness 10000) in paragraph at lines 2785--2790 []\T1/zi4/m/sl/10 "geometric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "log-normal"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "lognormal"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "negative [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 2957--2959 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 1117) in paragraph at lines 4736--4739 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2253] Underfull \hbox (badness 1117) in paragraph at lines 4815--4818 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6082 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h as been already used, duplicate ignored \relax l.6082 ...sical N, P, K Factorial Experiment}{npk} [2271] [2272] [2273] [2274] [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] Underfull \hbox (badness 1117) in paragraph at lines 6983--6990 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2283] Underfull \hbox (badness 3138) in paragraph at lines 7054--7060 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2284] [2285] [2286] Underfull \hbox (badness 1910) in paragraph at lines 7233--7236 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/zi4/m/sl/10 min(p, [2287] [2288] [2289] [2290] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm}) has been already used, duplicate ignored \relax l.7510 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm.1}) has been already used, duplicate ignored \relax l.7510 ... for Profiling glm Objects}{profile.glm} [2291] [2292] [2293] [2294] Underfull \hbox (badness 4686) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331]) (./Matrix-pkg.tex [2332] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2333] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} [2335] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2336] [2337] [2338] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2339] [2340] Underfull \hbox (badness 2035) in paragraph at lines 590--593 []\T1/ptm/m/n/10 The value of []\T1/zi4/m/sl/10 bdiag() []\T1/ptm/m/n/10 in-her -its from class [][][]\T1/zi4/m/sl/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , whe reas []\T1/zi4/m/sl/10 .bdiag() []\T1/ptm/m/n/10 re-turns a [2341] [2342] [2343] Underfull \hbox (badness 5817) in paragraph at lines 913--916 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 BunchKaufmanFactorization[][][][]\ T1/ptm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][ ][]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 6758) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("BunchKaufman", ...) Underfull \hbox (badness 2961) in paragraph at lines 919--924 []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of [2344] [2345] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2346] [2347] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) has been already used, duplicate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2348] Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/zi4/m/sl/10 CHMfactor [] \T1/ptm/m/n/10 is based on CHOLMOD's C-level [2349] [2350] [2351] [2352] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} Underfull \hbox (badness 6220) in paragraph at lines 1656--1658 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2353] Underfull \hbox (badness 2334) in paragraph at lines 1730--1734 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 1730--1734 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2354] Underfull \vbox (badness 10000) has occurred while \output is active [2355] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol2inv} ) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2356] [2357] Underfull \hbox (badness 10000) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 CholeskyFactorization[][][][]\T1/p tm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\ T1/ptm/m/n/10 , by class Underfull \hbox (badness 7722) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1990) in paragraph at lines 2051--2060 []\T1/ptm/m/n/10 In \T1/ptm/b/n/10 Ma-trix []\T1/zi4/m/sl/10 < 1.6-0[]\T1/ptm/m /n/10 , class []\T1/zi4/m/sl/10 Cholesky []\T1/ptm/m/n/10 ex-tended [][][]\T1/z i4/m/sl/10 dtrMatrix[][][] []\T1/ptm/m/n/10 and class []\T1/zi4/m/sl/10 pCholes ky []\T1/ptm/m/n/10 ex-tended Underfull \hbox (badness 2334) in paragraph at lines 2066--2070 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2066--2070 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2358] [2359] Underfull \hbox (badness 6220) in paragraph at lines 2185--2187 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2360] [2361] Underfull \hbox (badness 2334) in paragraph at lines 2315--2319 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2315--2319 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2362] Underfull \vbox (badness 10000) has occurred while \output is active [2363] Underfull \vbox (badness 10000) has occurred while \output is active [2364] [2365] [2366] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans} ) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums}) has been already used, duplicate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans} ) has been already used, duplicate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums}) has been already used, duplicate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} [2367] [2368] [2369] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2370] [2371] [2372] [2373] [2374] [2375] Underfull \hbox (badness 1983) in paragraph at lines 3390--3398 []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unpackedMatrix[][][][]\T1/ptm/m/n/10 . Al-ter-na-tively into the (cur-rently) three sub-classes [][][]\T1/zi4/m/sl/ 10 ddenseMatrix[][][][]\T1/ptm/m/n/10 , [2376] [2377] [2378] [2379] Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2380] Underfull \hbox (badness 3417) in paragraph at lines 3828--3830 []\T1/zi4/m/sl/10 .sparseDiagonal() []\T1/ptm/m/n/10 ex-ists pri-mar-ily to lev er-age ef-fi-cient C-level meth-ods avail-able for [2381] [2382] Underfull \hbox (badness 8019) in paragraph at lines 3933--3935 []\T1/zi4/m/sl/10 signature(x = "nMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cally eq uiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [][][]\T1/zi4/m/sl/1 0 which[][][](x, Underfull \hbox (badness 10000) in paragraph at lines 3936--3940 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these g roup meth-ods re-turn a [2383] [2384] [2385] [2386] Underfull \hbox (badness 1902) in paragraph at lines 4263--4265 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) []\T1/ptm/m/n/10 is some-times prefer-able to (and more ef-fi-cient than) []\T1/zi4/m/sl/10 zapsmall(x, Underfull \hbox (badness 2020) in paragraph at lines 4300--4303 []\T1/ptm/m/n/10 a typ-i-cally sparse ma-trix; in-ter-nally co-erced to ei-ther []\T1/zi4/m/sl/10 "[][]dgCMatrix[][][]" []\T1/ptm/m/n/10 or [2387] [2388] [2389] Underfull \hbox (badness 4378) in paragraph at lines 4503--4512 []\T1/ptm/m/n/10 or [][][]\T1/zi4/m/sl/10 chol[][][]() []\T1/ptm/m/n/10 is typ- i-cally used, e.g., see []\T1/zi4/m/sl/10 selectMethod("coerce", c(from="dsyMat rix", [2390] [2391] [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [ ]\T1/zi4/m/sl/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/zi4/m/sl/10 "spa rseMatrix"[]\T1/ptm/m/n/10 , by classes [2394] Underfull \hbox (badness 4518) in paragraph at lines 4929--4932 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = Underfull \hbox (badness 3690) in paragraph at lines 4932--4935 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = [2395] [2396] Underfull \hbox (badness 2318) in paragraph at lines 5035--5039 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dgCMatrix"[]\T1/ptm/m/n/10 , di-rectl y. Class []\T1/zi4/m/sl/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Clas s []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , [2397] Underfull \hbox (badness 3240) in paragraph at lines 5151--5155 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/ n/10 : the [][][]\T1/zi4/m/sl/10 determinant[][][](x) [2398] [2399] [2400] [2401] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class [2402] Underfull \hbox (badness 10000) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/s l/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L)[]\T 1/ptm/m/n/10 . Underfull \hbox (badness 1776) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1"]] []\T1/ptm/m/n/10 rep-re-sent the same per-mu-ta-tion ma-trix Underfull \hbox (badness 10000) in paragraph at lines 5529--5544 []\T1/zi4/m/sl/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl /10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L, U, Q )[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(L, U, P)[]\ T1/ptm/m/n/10 . Underfull \hbox (badness 1142) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1."]] []\T1/ptm/m/n/10 are iden-ti-cal mod-ulo []\T1/zi4/m/sl/10 Dimna mes[]\T1/ptm/m/n/10 . The [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 1087) in paragraph at lines 5987--5993 []\T1/ptm/m/n/10 a string whose first three char-ac-ters spec-ify the class of the re-sult. It Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/zi4/m/sl/10 c("trace", "sumLog", "prod", "mi n", "max", "range", [2409] [2410] [2411] [2412] Underfull \hbox (badness 1931) in paragraph at lines 6262--6264 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the []\T1/zi4/m/sl/10 zero.print [] \T1/ptm/m/n/10 codes should be aligned, see [2413] [2414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h as been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2415] Underfull \hbox (badness 1005) in paragraph at lines 6476--6481 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. []\T1/zi4/m/sl/10 N A []\T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1189) in paragraph at lines 6476--6481 \T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 as by de-fault, []\ T1/zi4/m/sl/10 border.col <- if(lwd < .01) NA else NULL []\T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/zi4/m/sl/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use [2416] Overfull \hbox (42.75635pt too wide) in paragraph at lines 6545--6545 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2417] [2418] [2419] [2420] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of [2421] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite }) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini te}) has been already used, duplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h as been already used, duplicate ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) has been already used, duplicate ignored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2422] [2423] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr ic}) has been already used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2424] Overfull \hbox (26.39984pt too wide) in paragraph at lines 7124--7124 []\T1/zi4/m/sl/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$dou ble.eps, tol1 = 8 * tol, ...)[] [2425] [2426] [2427] Underfull \vbox (badness 10000) has occurred while \output is active [2428] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker }) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2429] [2430] [2431 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr ix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.7725 \item[\code{Dim},\code{Dimnames}:] The dimension (a length-2] Underfull \hbox (badness 2478) in paragraph at lines 7736--7741 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7744--7747 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 7968--7971 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2435] Underfull \hbox (badness 10000) in paragraph at lines 8029--8032 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2436] [2437] [2438] [2439] pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.* .Rpcent.}) has been already used, duplicate ignored \relax l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod }) has been already used, duplicate ignored \relax l.8384 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro d}) has been already used, duplicate ignored \relax l.8460 ...tcrossprod}{matmult-methods}{tcrossprod} [2440] Underfull \hbox (badness 10000) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 5359) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-t rix mul-ti-pli-ca-tion. Mul-ti-pli-ca-tion Underfull \hbox (badness 10000) in paragraph at lines 8627--8629 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 8629--8631 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an [2441] [2442] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8856 \aliasA{det}{Matrix-class}{det} [2443] Underfull \hbox (badness 1527) in paragraph at lines 8933--8935 []\T1/zi4/m/sl/10 signature(x = "Matrix")[]\T1/ptm/m/n/10 : sim-ply de-fined as []\T1/zi4/m/sl/10 prod(dim(x)) []\T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 8941--8944 []\T1/zi4/m/sl/10 signature(object = "Matrix")[]\T1/ptm/m/n/10 : draws an [][][ ]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 8946--8949 [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 9148--9150 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", logarithm = "missing")[] \T1/ptm/m/n/10 : sets Underfull \hbox (badness 10000) in paragraph at lines 9154--9156 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "NULL")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with Underfull \hbox (badness 10000) in paragraph at lines 9156--9158 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "list")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with [2447] Underfull \hbox (badness 10000) in paragraph at lines 9193--9196 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/zi4/m/sl/10 expand1[][][] []\T1/p tm/m/n/10 and [][][]\T1/zi4/m/sl/10 expand2[][][] []\T1/ptm/m/n/10 for con-stru ct-ing ma-trix fac-tors from [2448] Underfull \hbox (badness 10000) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/zi4/m/sl/10 X <- (X + t(X))/2 [ ]\T1/ptm/m/n/10 should be done, af-ter []\T1/zi4/m/sl/10 X <- [2449] [2450] Underfull \vbox (badness 10000) has occurred while \output is active [2451] Underfull \hbox (badness 2478) in paragraph at lines 9507--9512 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 9515--9518 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2452] [2453] Underfull \hbox (badness 5924) in paragraph at lines 9696--9698 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2454] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha s been already used, duplicate ignored \relax l.9738 \aliasA{norm}{norm-methods}{norm} [2455] [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 10031--10034 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2458] Underfull \hbox (badness 10000) in paragraph at lines 10095--10098 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2459] [2460] [2461] Underfull \hbox (badness 4242) in paragraph at lines 10295--10298 [][][]\T1/zi4/m/sl/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unp ack[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/zi4/m/sl/10 "[][] unpackedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2462] Underfull \hbox (badness 3547) in paragraph at lines 10383--10386 []\T1/zi4/m/sl/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and o th-ers listed by []\T1/zi4/m/sl/10 showMethods("%*%", [2463] [2464] [2465] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.10601 \aliasA{qr}{qr-methods}{qr} [2466] [2467] [2468] [2469] Underfull \hbox (badness 7186) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/zi4/m/sl/10 qr[][][](x, tol, [2470] [2471] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11002 \aliasA{rcond}{rcond-methods}{rcond} [2472] [2473] [2474] [2475] Underfull \hbox (badness 2351) in paragraph at lines 11284--11292 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1509) in paragraph at lines 11284--11292 \T1/ptm/m/n/10 in-dices, if not []\T1/zi4/m/sl/10 symmetric [][]sample.int[][][ ](nrow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/zi4/m/sl/10 rand.x []\T1/pt m/m/n/10 is not []\T1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 --- [2476] [2477] Underfull \hbox (badness 10000) in paragraph at lines 11441--11444 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 SchurFactorization[][][][]\T1/ptm/ m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\T1/ ptm/m/n/10 , by class [2478] [2479] [2480] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11630 \aliasA{solve}{solve-methods}{solve} [2481] Underfull \hbox (badness 5316) in paragraph at lines 11816--11821 []\T1/ptm/m/n/10 Methods for dense []\T1/zi4/m/sl/10 a []\T1/ptm/m/n/10 are bui lt on 14 LA-PACK rou-tines: class []\T1/zi4/m/sl/10 d..Matrix[]\T1/ptm/m/n/10 , where [2482] Underfull \hbox (badness 10000) in paragraph at lines 11916--11919 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2483] Underfull \hbox (badness 10000) in paragraph at lines 11952--11955 []\T1/ptm/m/n/10 character string or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 11963--11967 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 10000) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 (object = "sparseMatrix", uniqT=FALSE)[]\T1/ptm/m/n/10 : Re-t urns an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 "sparseSummary" []\T1/ptm/m/n/10 which is ba-si-cally a [][][ ]\T1/zi4/m/sl/10 data.frame[][][] []\T1/ptm/m/n/10 with columns []\T1/zi4/m/sl/ 10 (i,j,x) []\T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 signature(from = "factor", to = "sparseMatrix")[]\T1/ptm/m/n/ 10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 "sparseMatrix" []\T1/ptm/m/n/10 pro-duces the ma-trix of in-d i-ca-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 5036) in paragraph at lines 12918--12920 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2497] Underfull \hbox (badness 2828) in paragraph at lines 13084--13087 []\T1/zi4/m/sl/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m /n/10 co-erces sparse vec-tors to Underfull \hbox (badness 2486) in paragraph at lines 13106--13109 []\T1/zi4/m/sl/10 signature(x = "sparseVector") []\T1/ptm/m/n/10 re-peat []\T1/ zi4/m/sl/10 x[]\T1/ptm/m/n/10 , with the same ar-gu-ment list []\T1/zi4/m/sl/10 (x, times, [2498] [2499] [2500] [2501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash. }) has been already used, duplicate ignored \relax l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13398--13400 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2502] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b een already used, duplicate ignored \relax l.13445 \aliasA{[}{subscript-methods}{[} [2503] [2504] Underfull \hbox (badness 2057) in paragraph at lines 13656--13658 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 10000) in paragraph at lines 13670--13675 []\T1/zi4/m/sl/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-tri x, in-her-it-ing from [][][]\T1/zi4/m/sl/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2505] [2506] Underfull \hbox (badness 10000) in paragraph at lines 13826--13831 []\T1/ptm/m/n/10 Note that all []\T1/zi4/m/sl/10 new(.)[]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 spMatrix[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 spar seMatrix[][][](*, repr="T") []\T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 13832--13838 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as []\ T1/zi4/m/sl/10 %*% []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 crossprod []\T1/ptm/m /n/10 are de-fined [2507] [2508] [2509] Overfull \hbox (21.75807pt too wide) in paragraph at lines 14021--14027 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/zi4/m/sl/10 usc_q.GAL\T1/ptm/m/n/10 ' ( re-trieved in 2008 from `\T1/zi4/m/sl/10 http://sal.uiuc.edu/weights/zips/usc.z ip\T1/ptm/m/n/10 ' [2510] [2511] [2512]) (./boot-pkg.tex Chapter 18. [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2523] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2524] Underfull \vbox (badness 10000) has occurred while \output is active [2525] [2526] [2527] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2528] [2529] [2530] [2531] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2532] [2533] [2534] [2535] [2536] [2537] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are []\T1/zi4/m/sl/10 "ordinary" []\T1/ptm/m/n/10 (case re-sam-pling), [2538] [2539] Underfull \vbox (badness 10000) has occurred while \output is active [2540] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2541] [2542] [2543] [2544] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2545] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2546] [2547] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/zi4/m /sl/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 n []\T1/ptm/m/n /10 is the sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/zi4/m/sl/10 unbiased []\T1/ptm/m/n/10 is []\T1/zi 4/m/sl/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/zi4/m/sl/10 1/n [ ]\T1/ptm/m/n/10 is used. This is mul-ti-plied by [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] [2564] [2565] [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2582] [2583] [2584] [2585] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2586] [2587] [2588] [2589] [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/zi4/m/sl/10 " saddle.distn"[]\T1/ptm/m/n/10 . See the help file for [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613] [2614] [2615]) (./class-pkg.tex [2616] Chapter 19. [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632]) (./cluster-pkg.tex Chapter 20. [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Underfull \hbox (badness 1412) in paragraph at lines 782--787 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][][]\T1/zi4/m/sl/10 agnes[][][][] \T1/ptm/m/n/10 ), orig-i-nally. Met-ric []\T1/zi4/m/sl/10 "jaccard"[]\T1/ptm/m/ n/10 : Kamil Ko-zlowski [2645] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2646] [2647] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2648] [2649] [2650] [2651] [2652] [2653] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 [2654] [2655] Underfull \hbox (badness 2503) in paragraph at lines 1583--1586 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/1 0 or []\T1/zi4/m/sl/10 "twins"[]\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2656] Underfull \hbox (badness 4954) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/zi4/m/s l/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2657] Underfull \hbox (badness 7667) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/zi4/m/sl/10 integer[]\T1/ptm/m/n/10 ) columns of []\ T1/zi4/m/sl/10 x[]\T1/ptm/m/n/10 , aka []\T1/zi4/m/sl/10 "I" []\T1/ptm/m/n/10 i n re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2658] [2659] Overfull \hbox (5.24408pt too wide) in paragraph at lines 1866--1866 []\T1/zi4/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (11.23795pt too wide) in paragraph at lines 1877--1877 []\T1/zi4/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] [2660] [2661] [2662] [2663] [2664] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 10000) in paragraph at lines 2223--2229 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also th e [][][]\T1/zi4/m/sl/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/zi4/m/s l/10 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2665] [2666] [2667] [2668] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] Underfull \hbox (badness 2980) in paragraph at lines 3059--3063 [][][]\T1/zi4/m/sl/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-e nces; [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 daisy[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [2677] [2678] [2679] [2680] [2681] [2682] Underfull \hbox (badness 1142) in paragraph at lines 3398--3401 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2683] Underfull \hbox (badness 1142) in paragraph at lines 3517--3520 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2684] [2685] [2686] [2687] Underfull \hbox (badness 2582) in paragraph at lines 3740--3745 [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 clusplot .default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pam[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 clara[][][][]\T1/ptm/m/n/10 , [2688] Underfull \hbox (badness 2698) in paragraph at lines 3802--3807 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls []\T1/ zi4/m/sl/10 plot([][]as.hclust[][][](x), ...)[]\T1/ptm/m/n/10 , which Underfull \hbox (badness 4792) in paragraph at lines 3802--3807 \T1/ptm/m/n/10 dis-patches to [][][]\T1/zi4/m/sl/10 plot.hclust[][][](..)[]\T1/ ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/zi4/m/sl/10 x x <- [2689] Underfull \hbox (badness 10000) in paragraph at lines 3875--3877 []\T1/ptm/m/n/10 Available as `\T1/zi4/m/sl/10 pluton.dat\T1/ptm/m/n/10 ' from the archive of the Uni-ver-sity of Antwer-pen, [2690] [2691] [2692] Underfull \hbox (badness 10000) in paragraph at lines 4089--4091 []\T1/ptm/m/n/10 a []\T1/zi4/m/sl/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/zi4/m/sl/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2693] [2694] [2695] [2696] Underfull \hbox (badness 2626) in paragraph at lines 4318--4323 []\T1/ptm/m/n/10 arguments passed [][][]\T1/zi4/m/sl/10 barplot[][][]()[]\T1/pt m/m/n/10 ; note that the de-fault used to be []\T1/zi4/m/sl/10 col = [2697] Underfull \hbox (badness 1383) in paragraph at lines 4395--4400 []\T1/ptm/m/n/10 While []\T1/zi4/m/sl/10 silhouette() []\T1/ptm/m/n/10 is \T1/p tm/m/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][][]\T1/zi4/m/sl/10 partition[][ ][] []\T1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] Underfull \hbox (badness 10000) in paragraph at lines 4836--4838 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2706] [2707]) (./codetools-pkg.tex [2708] Chapter 21. [2709] [2710] [2711] [2712] [2713]) (./foreign-pkg.tex [2714] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2715] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2716] [2717] [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 5417) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/zi4/m/sl/10 "append" []\T1/ptm/m/n/10 (the de-fau lt), the first orig-i-nal value la-bel is Underfull \hbox (badness 6001) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/z i4/m/sl/10 paste0(label, [2723] Overfull \hbox (6.73795pt too wide) in paragraph at lines 620--620 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2724] [2725] [2726] Underfull \hbox (badness 10000) in paragraph at lines 808--809 [2727] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2728] [2729] Underfull \hbox (badness 10000) in paragraph at lines 986--988 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2730] [2731] [2732] [2733] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/zi4/m/sl/10 forei gn:::writeForeignStata[]\T1/ptm/m/n/10 , [2734] [2735]) (./lattice-pkg.tex [2736] Chapter 23. [2737] Underfull \hbox (badness 1484) in paragraph at lines 114--118 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/zi4/m/sl/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2738] [2739] [2740] Underfull \vbox (badness 10000) has occurred while \output is active [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] Underfull \hbox (badness 1062) in paragraph at lines 1395--1399 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2754] Underfull \vbox (badness 4805) has occurred while \output is active [2755] Underfull \hbox (badness 1803) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 Lattice[][][] []\T1/ptm/m/n/10 for an overview of the pac k-age, as well as [][][]\T1/zi4/m/sl/10 barchart.table[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.trellis[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 panel.superpose[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.loess[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.average[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/zi4/m/sl/10 strip.default[][][][]\T1/ptm/m/n/10 , [2756] [2757] Underfull \hbox (badness 3009) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/zi4/m/sl/10 xyplot[ ][][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2758] [2759] [2760] [2761] [2762] [2763] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fi ed, the value of [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] Underfull \vbox (badness 10000) has occurred while \output is active [2772] [2773] Underfull \hbox (badness 2781) in paragraph at lines 2871--2873 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the []\T1/zi4/m/sl/10 co l.regions []\T1/ptm/m/n/10 ar-gu-ment in [2774] Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2775] [2776] [2777] [2778] [2779] [2780] [2781] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel} ) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2782] [2783] Underfull \hbox (badness 2368) in paragraph at lines 3644--3644 []\T1/zi4/m/sl/10 auto.key[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 prepanel[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 scales[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 strip[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 groups[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 x lab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/1 0 ylab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[]\T1/ptm/m/n/10 , [2784] [2785] [2786] [2787] [2788] Underfull \hbox (badness 5696) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 by spec-i-fy-ing []\T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")[]\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2789] [2790] [2791] Underfull \hbox (badness 1389) in paragraph at lines 4175--4183 \T1/ptm/m/n/10 based on HCL palettes, but cus-tomiza-tion of the palettes is al -lowed. Ear-lier be-haviour [2792] Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2793] [2794] [2795] Underfull \hbox (badness 3492) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/zi4/m/sl/10 col []\T1/ptm/m/n /10 is used for com-po-nents []\T1/zi4/m/sl/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 p lot.symbol[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 and [2796] [2797] [2798] [2799] [2800] [2801] [2802] Underfull \vbox (badness 10000) has occurred while \output is active [2803] [2804] [2805] Underfull \hbox (badness 6157) in paragraph at lines 5232--5235 []\T1/zi4/m/sl/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gl es via rect-an-gles. []\T1/zi4/m/sl/10 print.shingle []\T1/ptm/m/n/10 and [2806] [2807] [2808] [2809] [2810] [2811] [2812] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5684--5687 []\T1/zi4/m/sl/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on th e left of pan-els us-ing [2813] [2814] [2815] [2816] [2817] Underfull \hbox (badness 4805) in paragraph at lines 6045--6049 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/zi4/m/sl/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , ex-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 6056--6063 []\T1/zi4/m/sl/10 panel.identify[]\T1/ptm/m/n/10 . For []\T1/zi4/m/sl/10 panel. identify[]\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 6056--6063 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For []\T1 /zi4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 trellis.switchFocus[]\T1/ptm/m/n/10 , th ese are used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 6056--6063 [][][]\T1/zi4/m/sl/10 lattice.options[][][][]\T1/ptm/m/n/10 ) for high-light-in g the cho-sen view-port if so re-quested. [2818] [2819] [2820] [2821] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6356--6361 \T1/ptm/m/n/10 ter []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 is used if t here is no group-ing vari-able, oth-er-wise [2822] [2823] Underfull \hbox (badness 2310) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/zi4/m/sl/10 x []\T1/ptm/ m/n/10 for ev-ery level of []\T1/zi4/m/sl/10 y []\T1/ptm/m/n/10 (or the other w ay round if [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 3168) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. Use [2836] [2837] [2838] [2839] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2840] [2841] [2842] Underfull \hbox (badness 3333) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 default colours are ob-tained from []\T1/zi4/m/sl/10 plot.symb ol []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 plot.line []\T1/ptm/m/n/10 us-ing Underfull \hbox (badness 2318) in paragraph at lines 7836--7844 []\T1/zi4/m/sl/10 "spline" []\T1/ptm/m/n/10 adds a cu-bic smooth-ing spline fit (same as [][][]\T1/zi4/m/sl/10 panel.spline[][][][]\T1/ptm/m/n/10 ). [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/zi4/m/sl/10 panel.supe rpose []\T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8924--8926 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 ([]\T1/zi4/m/sl/10 panel.superpose.2 []\T1/ptm/m/n/10 orig-i-n ally con- [2858] [2859] [2860] Underfull \hbox (badness 3895) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/zi4/m/sl/10 type []\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in Underfull \hbox (badness 6625) in paragraph at lines 9095--9095 []\T1/zi4/m/sl/10 perspective[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 distance[]\T1 /ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 zlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 scr een[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 R.mat[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/ 10 aspect[]\T1/ptm/m/n/10 , [2861] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2862] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2863] Underfull \hbox (badness 5908) in paragraph at lines 9283--9286 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by []\T1/zi4/m/sl/10 xscale .components.default []\T1/ptm/m/n/10 and [2864] [2865] [2866] [2867] Underfull \hbox (badness 2418) in paragraph at lines 9574--9578 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing []\T1/z i4/m/sl/10 left, right, left.name, right.name, [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 2310) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/zi4/m/sl/10 "Svansota"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Manchuria "[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "No. 475"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "Velvet"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 10023--10026 []\T1/ptm/m/n/10 Factor with 6 lev-els: []\T1/zi4/m/sl/10 "Grand Rapids"[]\T1/p tm/m/n/10 , []\T1/zi4/m/sl/10 "Duluth"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Uni versity Farm"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Morris"[]\T1/ptm/m/n/10 , [2875] [2876] [2877] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma} ) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2878] [2879] [2880] Underfull \hbox (badness 4144) in paragraph at lines 10473--10476 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10473--10476 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2881] [2882]) (./mgcv-pkg.tex Chapter 24. [2883] [2884] [2885] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2886] [2887] [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gamObject[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][] [][]predi ct.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.gam[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/ m/sl/10 gam.side[][][][]\T1/ptm/m/n/10 , [2890] [2891] [2892] [2893] [2894] [2895] Underfull \hbox (badness 1406) in paragraph at lines 704--705 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2896] [2897] Underfull \hbox (badness 1158) in paragraph at lines 814--816 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2898] Underfull \hbox (badness 1259) in paragraph at lines 877--878 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2899] Underfull \vbox (badness 10000) has occurred while \output is active [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1281) in paragraph at lines 1272--1273 []\T1/zi4/m/sl/10 deviance[]\T1/ptm/m/n/10 ,[]\T1/zi4/m/sl/10 martingale[]\T1/p tm/m/n/10 ,[]\T1/zi4/m/sl/10 score[]\T1/ptm/m/n/10 , or []\T1/zi4/m/sl/10 schoe nfeld []\T1/ptm/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2906] [2907] Underfull \vbox (badness 10000) has occurred while \output is active [2908] Underfull \vbox (badness 10000) has occurred while \output is active [2909] [2910] Underfull \vbox (badness 10000) has occurred while \output is active [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 1142) in paragraph at lines 2604--2608 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2929] Underfull \hbox (badness 1043) in paragraph at lines 2630--2636 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2930] [2931] [2932] [2933] [2934] [2935] Underfull \vbox (badness 10000) has occurred while \output is active [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/zi4/m/sl/10 gam []\T1/pt m/m/n/10 mod-els us-ing []\T1/zi4/m/sl/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (see [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] [2958] Underfull \hbox (badness 1184) in paragraph at lines 4358--4362 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] Underfull \hbox (badness 1142) in paragraph at lines 5081--5085 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2971] Underfull \hbox (badness 1231) in paragraph at lines 5185--5187 []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 per-forms poorly with bi-nary data, sin ce it uses PQL. It is bet-ter to use []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 wit h [2972] [2973] [2974] Underfull \vbox (badness 10000) has occurred while \output is active [2975] [2976] [2977] [2978] Underfull \hbox (badness 2181) in paragraph at lines 5626--5627 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \hbox (badness 10000) in paragraph at lines 6130--6131 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/zi4/m/sl/10 gam(. ..,fit=FALSE) []\T1/ptm/m/n/10 or [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] Underfull \hbox (badness 1142) in paragraph at lines 6715--6719 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2999] [3000] [3001] Underfull \vbox (badness 10000) has occurred while \output is active [3002] [3003] [3004] [3005] Underfull \hbox (badness 1087) in paragraph at lines 7087--7088 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 rho []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/1 0 theta []\T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this case, and if [3006] [3007] [3008] Underfull \vbox (badness 10000) has occurred while \output is active [3009] Underfull \vbox (badness 10000) has occurred while \output is active [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 1242) in paragraph at lines 8046--8047 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3022] Underfull \hbox (badness 1122) in paragraph at lines 8072--8073 []\T1/ptm/m/n/10 When us-ing [][][]\T1/zi4/m/sl/10 NCV[][][] []\T1/ptm/m/n/10 w ith [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 worth-while per-for-mance im-prove-ments are avail-able by set-ting [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 6001) in paragraph at lines 8785--8787 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] Underfull \vbox (badness 10000) has occurred while \output is active [3046] [3047] Underfull \hbox (badness 1038) in paragraph at lines 9533--9536 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/zi4/m/sl/10 Di m.pdIndot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 coef.pdIdnot[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9533--9536 []\T1/zi4/m/sl/10 logDet.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdConstruc t.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdIdnot[]\T1/ptm/m/n/10 , [3048] Underfull \hbox (badness 10000) in paragraph at lines 9589--9592 []\T1/ptm/m/n/10 These func-tions ([]\T1/zi4/m/sl/10 pdTens[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/sl/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFacto r.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] Underfull \hbox (badness 1852) in paragraph at lines 10261--10264 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3060] [3061] [3062] Underfull \hbox (badness 1852) in paragraph at lines 10430--10433 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3063] [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] Underfull \hbox (badness 1205) in paragraph at lines 10670--10671 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10670--10671 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10676--10681 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3067] Underfull \hbox (badness 1205) in paragraph at lines 10760--10761 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10760--10761 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3068] [3069] [3070] Underfull \hbox (badness 1253) in paragraph at lines 10959--10961 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3071] [3072] [3073] [3074] [3075] [3076] Underfull \hbox (badness 4792) in paragraph at lines 11220--11223 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/zi4/m/s l/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/zi4/m/sl/10 gam[][][] []\ T1/ptm/m/n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 11220--11223 \T1/ptm/m/n/10 see [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 . If smooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3077] Underfull \hbox (badness 10000) in paragraph at lines 11327--11330 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/zi4/m/sl /10 "deviance"[]\T1/ptm/m/n/10 , [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 3861) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [3092] [3093] Underfull \hbox (badness 1320) in paragraph at lines 12233--12238 \T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 b.orig = D*b.repara []\T1/ptm/m/n/10 (wher e []\T1/zi4/m/sl/10 b.orig []\T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec- tor). If ma- [3094] Underfull \hbox (badness 1975) in paragraph at lines 12339--12344 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3095] [3096] Underfull \hbox (badness 1762) in paragraph at lines 12428--12440 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][][]\T1/zi4/m/sl/10 tprs[][][] []\T1/ptm/m/n/10 ); []\T1/zi4/m/sl/10 ts.smooth.spec []\T1/ptm/m/n/10 (thin pla te re-gres-sion splines with [3097] [3098] [3099] Underfull \hbox (badness 7667) in paragraph at lines 12640--12646 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of o ne or two vari-ables, spec-i-fied via terms like [3100] Underfull \hbox (badness 10000) in paragraph at lines 12681--12682 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] Underfull \hbox (badness 10000) in paragraph at lines 12958--12960 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3106] [3107] Underfull \hbox (badness 10000) in paragraph at lines 13088--13089 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3108] [3109] [3110] Underfull \hbox (badness 1436) in paragraph at lines 13224--13231 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 only al-lows one [3111] [3112] Underfull \hbox (badness 10000) in paragraph at lines 13323--13324 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] Underfull \hbox (badness 10000) in paragraph at lines 13924--13930 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13924--13930 []\T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 for-mula. Note [3123] [3124] [3125] Underfull \vbox (badness 10000) has occurred while \output is active [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] Underfull \hbox (badness 10000) in paragraph at lines 14268--14269 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3129] [3130] [3131] [3132] Overfull \hbox (35.26862pt too wide) in paragraph at lines 14480--14480 []\T1/zi4/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3133] [3134] Underfull \hbox (badness 3895) in paragraph at lines 14626--14629 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of a ny num-ber of vari-ables, spec-i-fied via terms like [3135] Underfull \hbox (badness 10000) in paragraph at lines 14671--14673 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3136] [3137] [3138] [3139] [3140] Underfull \hbox (badness 1371) in paragraph at lines 14951--14957 []\T1/zi4/m/sl/10 bs="ad" []\T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-ti ve smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14962--14964 []\T1/zi4/m/sl/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see Underfull \hbox (badness 1132) in paragraph at lines 14962--14964 [][][]\T1/zi4/m/sl/10 smooth.construct.fs.smooth.spec[][][][]\T1/ptm/m/n/10 ) i s avail-able for the case in which a smooth is [3141] Underfull \hbox (badness 6461) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Duchon.spline[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cubic.regression.spline[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/sl/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4 /m/sl/10 d.spline[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 soap[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Spherical.Spline[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][][]\T1/ptm/m/n/10 , [3142] [3143] [3144] [3145] Underfull \hbox (badness 2326) in paragraph at lines 15200--15207 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][][]\T1/zi4/m/sl/10 smooth.construct[][][] []\T1/ptm/m/n/10 and [3146] Underfull \hbox (badness 2158) in paragraph at lines 15285--15285 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] Underfull \vbox (badness 10000) has occurred while \output is active [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] Overfull \hbox (21.42029pt too wide) in paragraph at lines 16847--16847 []\T1/zi4/m/sl/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL ,unconditional=FALSE, ...)[] [3172] [3173] [3174] Underfull \hbox (badness 1796) in paragraph at lines 16960--16963 []\T1/ptm/m/n/10 other op-tions to pass on to [][][]\T1/zi4/m/sl/10 persp[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 or [][][] \T1/zi4/m/sl/10 contour[][][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183]) (./nlme-pkg.tex [3184] Chapter 25. [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] Underfull \hbox (badness 10000) in paragraph at lines 2251--2257 [][][]\T1/zi4/m/sl/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cor ARMA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.corMatrix .corCompSymm}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.3185 ] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] Underfull \hbox (badness 1067) in paragraph at lines 4410--4415 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] Underfull \hbox (badness 10000) in paragraph at lines 5156--5160 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/sl/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 getCovariate.varFunc[][][][]\T1/ptm/m/n/10 , [3264] [3265] [3266] [3267] [3268] [3269] [3270] Underfull \hbox (badness 10000) in paragraph at lines 5588--5591 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroups.lmList[][][][]\ T1/ptm/m/n/10 , [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 10000) in paragraph at lines 5969--5974 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 getGroupsFormula.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroupsFormula.lme[][][][]\T1/ptm/m/n/10 , [3278] [3279] [3280] [3281] Underfull \hbox (badness 1490) in paragraph at lines 6244--6255 [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsObject[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.gls[] [][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 qqnorm.gls[][][][]\T1/ptm/m/n/10 , [3282] Underfull \hbox (badness 10000) in paragraph at lines 6308--6310 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3283] [3284] [3285] [3286] [3287] [3288] Underfull \hbox (badness 10000) in paragraph at lines 6717--6719 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3289] [3290] [3291] [3292] Underfull \hbox (badness 10000) in paragraph at lines 6988--6995 [][][]\T1/zi4/m/sl/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gap ply[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gsummary[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plo t.nffGroupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.nfnGroupedD ata[][][][]\T1/ptm/m/n/10 , [3293] [3294] [3295] [3296] Underfull \hbox (badness 10000) in paragraph at lines 7248--7253 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 In itialize.glsStruct[][][][]\T1/ptm/m/n/10 , [3297] [3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] Underfull \hbox (badness 10000) in paragraph at lines 8530--8532 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3316] [3317] [3318] [3319] [3320] Underfull \hbox (badness 10000) in paragraph at lines 8815--8822 [][][]\T1/zi4/m/sl/10 lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lme.lmLi st[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.lmList[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 pooledSD[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 predict.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 residuals.lmLi st[][][][]\T1/ptm/m/n/10 , [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 10000) in paragraph at lines 9336--9343 [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/zi4/m/sl/10 gls[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik.corStruct[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik .lmList[][][][]\T1/ptm/m/n/10 , [3329] [3330] [3331] [3332] [3333] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9698 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1} ) has been already used, duplicate ignored \relax l.9698 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343] [3344] [3345] Underfull \hbox (badness 1596) in paragraph at lines 10475--10501 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3346] [3347] Underfull \hbox (badness 1490) in paragraph at lines 10591--10597 [][][]\T1/zi4/m/sl/10 nlmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlme.nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlmeObject[][][][]\ T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 nlmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pdClasses [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 reStruct[][][][]\T1/ptm/m/n/10 , [3348] [3349] [3350] Underfull \hbox (badness 10000) in paragraph at lines 10832--10834 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] Underfull \hbox (badness 1286) in paragraph at lines 13735--13742 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/zi4/m/ sl/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/zi4/m/sl/10 inner []\T1/ptm/m/n/1 0 or [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects}) has been already used, duplicate ignored \relax l.15178 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects.1}) has been already used, duplicate ignored \relax l.15178 ...Extract Random Effects}{random.effects} [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423] [3424] Underfull \hbox (badness 3884) in paragraph at lines 15817--15821 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15817--15821 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15817--15821 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ sl/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3425] [3426] Underfull \hbox (badness 1067) in paragraph at lines 15929--15934 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3427] [3428] [3429] [3430] Underfull \hbox (badness 1448) in paragraph at lines 16172--16181 \T1/ptm/m/n/10 Op-tions in-clude []\T1/zi4/m/sl/10 "response" []\T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] Underfull \hbox (badness 1728) in paragraph at lines 16876--16879 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3441] [3442] [3443] [3444] [3445] Underfull \hbox (badness 8056) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 Symmetry" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdCompSymm[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Diagonal" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl /10 pdDiag[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 an Identity" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdIdent[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite, Natural Underfull \hbox (badness 5756) in paragraph at lines 17210--17219 \T1/zi4/m/sl/10 Parametrization" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdNatur al[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite" []\T1/ptm/m/ n/10 for [3446] [3447] [3448] [3449] [3450] Underfull \hbox (badness 10000) in paragraph at lines 17532--17540 [][][]\T1/zi4/m/sl/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 var ConstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varConstProp[][][][]\T 1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varIdent[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varPower[][][][]\T1/ptm/m/n/10 , [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] Underfull \hbox (badness 10000) in paragraph at lines 18242--18252 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram .corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corRatio[][][][ ]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18242--18252 [][][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Variogram.corSpher[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Vari ogram.default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.gls[][][] []\T1/ptm/m/n/10 , [3461] [3462] [3463] [3464] [3465] Underfull \hbox (badness 5036) in paragraph at lines 18566--18575 [][][]\T1/zi4/m/sl/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.default[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom. 1}) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3479] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [3480] [3481] [3482] [3483] [3484] [3485] [3486]) (./rpart-pkg.tex Chapter 27. [3487] [3488] [3489] [3490] [3491] [3492] [3493] [3494] [3495] [3496] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , adds to the la-bel Underfull \hbox (badness 1348) in paragraph at lines 771--775 \T1/zi4/m/sl/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method []\T1/zi4/m/sl/10 class[]\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 for [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]) (./spatial-pkg.tex [3516] Chapter 28. [3517] [3518] [3519] [3520] [3521] [3522] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535]) (./survival-pkg.tex [3536] Chapter 29. [3537] [3538] [3539] [3540] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3541] [3542] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h as been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3555] [3556] [3557] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3558] Underfull \hbox (badness 3679) in paragraph at lines 1455--1459 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by []\T1/zi4/m/sl/10 table(colon$nodes, [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] Underfull \hbox (badness 3250) in paragraph at lines 2143--2158 \T1/ptm/m/n/10 ing guides and prepend []\T1/zi4/m/sl/10 survival:: []\T1/ptm/m/ n/10 onto ev-er-thing, in-clud-ing the spe-cial terms, e.g., Underfull \hbox (badness 10000) in paragraph at lines 2143--2158 []\T1/zi4/m/sl/10 survival::coxph(survival:Surv(time, status) ~ age + survival: :cluster(inst), [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] Underfull \hbox (badness 1389) in paragraph at lines 3661--3663 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3591] [3592] [3593] [3594] Overfull \hbox (467.89665pt too wide) in alignment at lines 3947--3947 [] [] [3595] [3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606] [3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] [3618] [3619] [3620] Underfull \hbox (badness 5274) in paragraph at lines 5694--5696 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "summary.survfit"[]\T1/p tm/m/n/10 , which is the re-sult of the [3621] [3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631] [3632] [3633] [3634] [3635] [3636] [3637] [3638] Underfull \hbox (badness 1281) in paragraph at lines 6962--6965 []\T1/ptm/m/n/10 type of resid-u-als, with choices of []\T1/zi4/m/sl/10 "respon se"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "deviance"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "dfbeta"[]\T1/ptm/m/n/10 , [3639] [3640] [3641] [3642] [3643] [3644] [3645] [3646] [3647] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7545 ...ata from a soldering experiment}{solder} [3648] [3649] [3650] [3651] [3652] [3653] [3654] [3655] [3656] [3657] [3658] [3659] [3660] [3661] [3662] [3663] [3664] [3665] [3666] [3667] [3668] [3669] Underfull \hbox (badness 1038) in paragraph at lines 9152--9158 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3670] [3671] [3672] [3673] [3674] Underfull \hbox (badness 10000) in paragraph at lines 9510--9515 [][][]\T1/zi4/m/sl/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 survfit.object [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][][]\T1/ptm/m/n/10 , [3675] [3676] [3677] [3678] [3679] Underfull \hbox (badness 4441) in paragraph at lines 9903--9913 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3680] [3681] Underfull \hbox (badness 1490) in paragraph at lines 10078--10087 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] []\T1/ptm/m/n/10 for sur-vival curves from Cox mod-els, [][][]\T1/zi4/m/sl/10 survfit.object[][][] []\T1/ptm/m/n/10 for a de-scrip-tion Underfull \hbox (badness 2213) in paragraph at lines 10078--10087 \T1/ptm/m/n/10 of the com-po-nents of a surv-fit ob-ject, [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lines.survfit[][][][]\T1/ptm/m/n/10 , [3682] [3683] [3684] [3685] [3686] [3687] [3688] Underfull \hbox (badness 1354) in paragraph at lines 10580--10584 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3689] [3690] [3691] [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] [3700] [3701] [3702] [3703] [3704] [3705] [3706] [3707] [3708] [3709] [3710] [3711] [3712]) (./fullrefman.ind [3713] [3714] [3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723] [3724] [3725] [3726] [3727] [3728] [3729] [3730] [3731] [3732] [3733] [3734] [3735] [3736] [3737] [3738] [3739] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2898--2900 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3740] [3741] [3742] [3743] [3744] [3745] [3746] Overfull \hbox (8.3567pt too wide) in paragraph at lines 3550--3552 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3747] [3748] [3749] [3750] [3751] [3752] [3753] [3754] [3755] [3756] [3757] Overfull \hbox (5.8567pt too wide) in paragraph at lines 4958--4960 []\T1/zi4/m/it/10 [,Matrix,lMatrix,missing,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 4960--4962 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wide) in paragraph at lines 5500--5502 []\T1/zi4/m/it/10 %&%,RsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5502--5504 []\T1/zi4/m/it/10 %&%,RsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5506--5508 []\T1/zi4/m/it/10 %&%,RsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5512--5514 []\T1/zi4/m/it/10 %&%,TsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5514--5516 []\T1/zi4/m/it/10 %&%,TsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5516--5518 []\T1/zi4/m/it/10 %&%,TsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5520--5522 []\T1/zi4/m/it/10 %&%,TsparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5540--5542 []\T1/zi4/m/it/10 %&%,diagonalMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5542--5544 []\T1/zi4/m/it/10 %&%,diagonalMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5544--5546 []\T1/zi4/m/it/10 %&%,diagonalMatrix,TsparseMatrix-method [3762] Overfull \hbox (10.8567pt too wide) in paragraph at lines 5548--5550 []\T1/zi4/m/it/10 %&%,diagonalMatrix,diagonalMatrix-method [3763] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5818--5820 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3764] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5971--5973 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3765] Overfull \hbox (10.8567pt too wide) in paragraph at lines 6224--6226 []\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 6232--6234 []\T1/zi4/m/it/10 Arith,ddenseMatrix,sparseVector-method [3766] Overfull \hbox (10.8567pt too wide) in paragraph at lines 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(15.01662pt too wide) in paragraph at lines 7037--7039 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3770] [3771] [3772] [3773] [3774] [3775] [3776] [3777] Overfull \hbox (30.8567pt too wide) in paragraph at lines 8540--8542 []\T1/zi4/m/it/10 coerce,diagonalMatrix,symmetricMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 8542--8544 []\T1/zi4/m/it/10 coerce,diagonalMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8562--8564 []\T1/zi4/m/it/10 coerce,generalMatrix,packedMatrix-method [3778] [3779] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8708--8710 []\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8716--8718 []\T1/zi4/m/it/10 coerce,matrix.coo,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8720--8722 []\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method Overfull 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coerce,sparseVector,TsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8792--8794 []\T1/zi4/m/it/10 coerce,sparseVector,unpackedMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8794--8796 []\T1/zi4/m/it/10 coerce,sparseVector,zsparseVector-method [3780] Overfull \hbox (20.8567pt too wide) in paragraph at lines 8968--8970 []\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method [3781] Overfull \hbox (40.8567pt too wide) in paragraph at lines 9000--9002 []\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method [3782] [3783] Overfull \hbox (30.8567pt too wide) in paragraph at lines 9536--9538 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9538--9540 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,denseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9540--9542 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method Overfull \hbox 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crossprod,denseMatrix,TsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9568--9570 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9570--9572 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,denseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9572--9574 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9574--9576 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method [3784] Overfull \hbox (5.8567pt too wide) in paragraph at lines 9576--9578 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9578--9580 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,RsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9580--9582 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9582--9584 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,vector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9598--9600 []\T1/zi4/m/it/10 crossprod,matrix,diagonalMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9620--9622 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9622--9624 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,denseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9624--9626 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9628--9630 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9630--9632 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,RsparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 9632--9634 []\T1/zi4/m/it/10 crossprod,RsparseMatrix,TsparseMatrix-method 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crossprod,vector,diagonalMatrix-method [3785] Overfull \hbox (15.01662pt too wide) in paragraph at lines 9715--9717 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9779--9781 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9784--9786 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9793--9795 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3786] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10154--10156 []\T1/zi4/m/it/10 determinant,BunchKaufman,logical-method [3787] Overfull \hbox (15.8567pt too wide) in paragraph at lines 10170--10172 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull 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Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ .texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts /map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Chapter 2 [1] Cross reference values unknown; you must run TeX again. [2] Underfull \hbox (badness 10000) in paragraph at lines 294--323 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 656--661 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1817--1817 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 351285 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ .texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts /map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-FAQ.aux) Chapter 2 [1] [2] Underfull \hbox (badness 10000) in paragraph at lines 294--323 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 656--661 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1817--1817 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 368500 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.t2d/pdf/xtr/R-a dmin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) 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[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] [17] Chapter 4 [18] [19] [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2207--2207 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3227--3227 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3441--3443 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [42] [43] [44] [45] [46] [47] [48] [49] [50] Appendix B [51] [52] [53] [54] [55] Appendix C [56] [57] [58] [59] [60] [61] Overfull \hbox (101.2292pt too wide) in paragraph at lines 5189--5189 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.42-da rwin.20-arm64.tar.xz[] Overfull \hbox (83.98314pt too wide) in paragraph at lines 5191--5191 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.4.2-darwi n.20-arm64.tar.xz[] [62] [63] Overfull \hbox (39.30717pt too wide) in paragraph at lines 5312--5312 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.1-darwin.20 -arm64.tar.gz[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 5349--5349 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5358--5359 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [64] [65] [66] Overfull \hbox (51.1502pt too wide) in paragraph at lines 5630--5630 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [67] [68] [69] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5896--5896 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5901--5901 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] [70] Overfull \hbox (50.80455pt too wide) in paragraph at lines 5942--5942 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [71] (Function and variable index) [72] No file R-admin.vrs. (Concept index) [73] No file R-admin.cps. (Environment variable index) [74] No file R-admin.ens. [75] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (78 pages, 466600 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.t2d/pdf/xtr/R-a dmin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] [17] Chapter 4 [18] [19] [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2207--2207 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3227--3227 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3441--3443 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [42] [43] [44] [45] [46] [47] [48] [49] [50] Appendix B [51] [52] [53] [54] [55] Appendix C [56] [57] [58] [59] [60] [61] Overfull \hbox (101.2292pt too wide) in paragraph at lines 5189--5189 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.42-da rwin.20-arm64.tar.xz[] Overfull \hbox (83.98314pt too wide) in paragraph at lines 5191--5191 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.4.2-darwi n.20-arm64.tar.xz[] [62] l.5238: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5238: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5238: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [63] Overfull \hbox (39.30717pt too wide) in paragraph at lines 5312--5312 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.1-darwin.20 -arm64.tar.gz[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 5349--5349 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5358--5359 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [64] [65] [66] Overfull \hbox (51.1502pt too wide) in paragraph at lines 5630--5630 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [67] [68] [69] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5896--5896 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5901--5901 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] [70] Overfull \hbox (50.80455pt too wide) in paragraph at lines 5942--5942 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [71] (Function and variable index) [72] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.vrs) (Concept index) [73] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.cps) (Environment variable index) [74] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-admin.ens) [75] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (80 pages, 510245 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.t2d/pdf/xtr/R-da ta.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] No file R-data.vrs. (Concept index) [29] No file R-data.cps. [30] ) (see the transcript file for additional information) Output written on R-data.pdf (33 pages, 263544 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.t2d/pdf/xtr/R-da ta.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 299645 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.t2d/pdf/xtr/R-da ta.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 299639 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.t2d/pdf/xtr/R-ex ts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] Underfull \hbox (badness 10000) in paragraph at lines 1702--1712 [][]@texttt https:// sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tktable2. 10. tar. gz/ [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2958--2961 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [34] Underfull \hbox (badness 10000) in paragraph at lines 3040--3046 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3127--3127 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [36] Underfull \hbox (badness 10000) in paragraph at lines 3271--3275 @textrm ([][]@texttt https:// cmake. org/ cmake/ help/ latest/ manual/ c make-env-variables. 7. html# [37] [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3372--3372 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 5006--5006 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5025--5025 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5492--5492 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5494--5494 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5495--5495 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5510--5510 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [62] Underfull \hbox (badness 7558) in paragraph at lines 5568--5572 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6052--6055 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [69] [70] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6272--6272 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [71] [72] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6404--6404 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (72.48576pt too wide) in paragraph at lines 6431--6431 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] Underfull \hbox (badness 10000) in paragraph at lines 6464--6465 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [73] [74] [75] [76] [77] [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 7129--7139 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[]) and RForge [80] Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 8195--8202 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8375--8381 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8407--8412 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [96] [97] [98] Chapter 3 [99] [100] [101] [102] [103] [104] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9178--9178 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [105] Chapter 4 [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9625--9634 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9895--9907 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9911--9912 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [114] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10050--10050 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] [115] Underfull \hbox (badness 10000) in paragraph at lines 10083--10086 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10083--10086 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen [116] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10198--10198 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10199--10199 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10202--10202 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10210--10210 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [117] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10265--10265 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 10635--10637 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [122] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10702--10702 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10721--10721 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10732--10732 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] [123] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10762--10762 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11642--11642 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [134] [135] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11806--11806 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [136] [137] [138] [139] [140] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12243--12243 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 10000) in paragraph at lines 13264--13268 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14364--14364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [164] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14459--14459 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [165] Chapter 6 [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Warning: unbalanced parentheses in @def... [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16594--16600 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [190] [191] Chapter 8 [192] [193] [194] Overfull \hbox (22.06111pt too wide) in paragraph at lines 17015--17015 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [195] Overfull \hbox (33.55849pt too wide) in paragraph at lines 17073--17073 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [196] [197] [198] [199] [200] [201] Underfull \hbox (badness 10000) in paragraph at lines 17593--17600 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [202] [203] (Function and variable index) [204] No file R-exts.vrs. (Concept index) [205] No file R-exts.cps. [206] ) (see the transcript file for additional information) Output written on R-exts.pdf (209 pages, 980705 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.t2d/pdf/xtr/R-ex ts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] Underfull \hbox (badness 10000) in paragraph at lines 1702--1712 [][]@texttt https:// sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tktable2. 10. tar. gz/ [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2958--2961 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [34] Underfull \hbox (badness 10000) in paragraph at lines 3040--3046 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3127--3127 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [36] Underfull \hbox (badness 10000) in paragraph at lines 3271--3275 @textrm ([][]@texttt https:// cmake. org/ cmake/ help/ latest/ manual/ c make-env-variables. 7. html# [37] [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3372--3372 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 5006--5006 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5025--5025 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5492--5492 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5494--5494 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5495--5495 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5510--5510 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [62] Underfull \hbox (badness 7558) in paragraph at lines 5568--5572 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6052--6055 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [69] [70] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6272--6272 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [71] [72] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6404--6404 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (72.48576pt too wide) in paragraph at lines 6431--6431 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] Underfull \hbox (badness 10000) in paragraph at lines 6464--6465 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [73] [74] [75] [76] [77] [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 7129--7139 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[]) and RForge [80] Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 8195--8202 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8375--8381 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8407--8412 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [96] [97] [98] Chapter 3 [99] [100] [101] [102] [103] [104] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9178--9178 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [105] Chapter 4 [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9625--9634 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9895--9907 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9911--9912 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [114] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10050--10050 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] [115] Underfull \hbox (badness 10000) in paragraph at lines 10083--10086 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10083--10086 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen [116] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10198--10198 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10199--10199 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10202--10202 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10210--10210 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [117] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10265--10265 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 10635--10637 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [122] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10702--10702 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10721--10721 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10732--10732 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] [123] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10762--10762 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11642--11642 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [134] [135] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11806--11806 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [136] [137] [138] [139] [140] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12243--12243 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 10000) in paragraph at lines 13264--13268 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14364--14364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [164] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14459--14459 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [165] Chapter 6 [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Warning: unbalanced parentheses in @def... [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16594--16600 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [190] [191] Chapter 8 [192] [193] [194] Overfull \hbox (22.06111pt too wide) in paragraph at lines 17015--17015 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [195] Overfull \hbox (33.55849pt too wide) in paragraph at lines 17073--17073 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [196] [197] [198] [199] [200] [201] Underfull \hbox (badness 10000) in paragraph at lines 17593--17600 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [202] [203] (Function and variable index) [204] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.vrs [205] [206] [207] [208]) (Concept index) [209] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.cps [210]) [211] ) (see the transcript file for additional information) Output written on R-exts.pdf (218 pages, 1046974 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.t2d/pdf/xtr/R-ex ts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] Underfull \hbox (badness 10000) in paragraph at lines 1702--1712 [][]@texttt https:// sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tktable2. 10. tar. gz/ [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2958--2961 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [34] Underfull \hbox (badness 10000) in paragraph at lines 3040--3046 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3127--3127 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [36] Underfull \hbox (badness 10000) in paragraph at lines 3271--3275 @textrm ([][]@texttt https:// cmake. org/ cmake/ help/ latest/ manual/ c make-env-variables. 7. html# [37] [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3372--3372 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 5006--5006 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5025--5025 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5492--5492 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5494--5494 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5495--5495 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5510--5510 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [62] Underfull \hbox (badness 7558) in paragraph at lines 5568--5572 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6052--6055 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [69] [70] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6272--6272 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [71] [72] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6404--6404 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (72.48576pt too wide) in paragraph at lines 6431--6431 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] Underfull \hbox (badness 10000) in paragraph at lines 6464--6465 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [73] [74] [75] [76] [77] [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 7129--7139 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[]) and RForge [80] Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 8195--8202 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8375--8381 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8407--8412 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [96] [97] [98] Chapter 3 [99] [100] [101] [102] [103] [104] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9178--9178 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [105] Chapter 4 [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9625--9634 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9895--9907 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9911--9912 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [114] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10050--10050 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] [115] Underfull \hbox (badness 10000) in paragraph at lines 10083--10086 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10083--10086 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen [116] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10198--10198 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10199--10199 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10202--10202 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10210--10210 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [117] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10265--10265 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 10635--10637 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [122] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10702--10702 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10721--10721 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10732--10732 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] [123] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10762--10762 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11642--11642 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [134] [135] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11806--11806 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [136] [137] [138] [139] [140] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12243--12243 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 10000) in paragraph at lines 13264--13268 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14364--14364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [164] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14459--14459 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [165] Chapter 6 [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Warning: unbalanced parentheses in @def... [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16594--16600 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [190] [191] Chapter 8 [192] [193] [194] Overfull \hbox (22.06111pt too wide) in paragraph at lines 17015--17015 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [195] Overfull \hbox (33.55849pt too wide) in paragraph at lines 17073--17073 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [196] [197] [198] [199] [200] [201] Underfull \hbox (badness 10000) in paragraph at lines 17593--17600 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [202] [203] (Function and variable index) [204] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.vrs [205] [206] [207] [208]) (Concept index) [209] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-exts.cps [210]) [211] ) (see the transcript file for additional information) Output written on R-exts.pdf (218 pages, 1046921 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.t2d/pdf/xtr/R-i ntro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] Chapter 13 [74] [75] Chapter 14 [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6653--6658 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87] [88] Appendix C [89] [90] Appendix D [91] No file R-intro.vrs. Appendix E [92] No file R-intro.cps. Appendix F [93] [94] ) (see the transcript file for additional information) Output written on R-intro.pdf (97 pages, 566885 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.t2d/pdf/xtr/R-i ntro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] Chapter 13 [74] [75] Chapter 14 [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6653--6658 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87] [88] Appendix C [89] [90] Appendix D [91] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.vrs [92] [93]) Appendix E [94] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.cps [95]) Appendix F [96] [97] ) (see the transcript file for additional information) Output written on R-intro.pdf (103 pages, 618947 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.t2d/pdf/xtr/R-i ntro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] Chapter 13 [74] [75] Chapter 14 [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6653--6658 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87] [88] Appendix C [89] [90] Appendix D [91] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.vrs [92] [93]) Appendix E [94] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-intro.cps [95]) Appendix F [96] [97] ) (see the transcript file for additional information) Output written on R-intro.pdf (103 pages, 618954 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.t2d/pdf/xtr/R-in ts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] Underfull \hbox (badness 10000) in paragraph at lines 3978--3982 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [47] Underfull \hbox (badness 10000) in paragraph at lines 4012--4017 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60] Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64] (Function and variable index) [65] No file R-ints.vrs. (Concept index) [66] No file R-ints.cps. [67] ) (see the transcript file for additional information) Output written on R-ints.pdf (70 pages, 416725 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.t2d/pdf/xtr/R-in ts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] Underfull \hbox (badness 10000) in paragraph at lines 3978--3982 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [47] Underfull \hbox (badness 10000) in paragraph at lines 4012--4017 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60] Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64] (Function and variable index) [65] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.vrs [66]) (Concept index) [67] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.cps) [68] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 464381 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.t2d/pdf/xtr/R-in ts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] Underfull \hbox (badness 10000) in paragraph at lines 3978--3982 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [47] Underfull \hbox (badness 10000) in paragraph at lines 4012--4017 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60] Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64] (Function and variable index) [65] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.vrs [66]) (Concept index) [67] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-ints.cps) [68] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 464385 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.t2d/pdf/xtr/R-la ng.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4396--4398 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 345155 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.t2d/pdf/xtr/R-la ng.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4396--4398 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 386950 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.t2d/pdf/xtr/R-la ng.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-defs.texi (/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/version.texi) [1{/var/l ib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4396--4398 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 386947 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' + make compact-pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' compacting PDF manuals in doc/manual compacted ‘R-FAQ.pdf’ from 360Kb to 302Kb compacted ‘R-data.pdf’ from 293Kb to 226Kb make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' + make info make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ + mv doc/FAQ.utf8 doc/FAQ + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.hY8DZs + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + '[' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-4.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-4.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-4.4.1-build + mkdir /builddir/build/BUILD/R-4.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.4.1 + make DESTDIR=/builddir/build/BUILD/R-4.4.1-build/BUILDROOT install install-pdf install-info mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' installing doc ... mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/man/man1 make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/html' installing doc/html ... mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R/html make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' installing doc/manual ... mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R/manual mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R/manual/images make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/etc' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/etc installing etc ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/share' installing share ... mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/R mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/dictionaries mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/encodings mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/java mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/licenses mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/make mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/Rd mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/Rd/macros mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/sh mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/texmf mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/texmf/bibtex/bib mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/texmf/bibtex/bst mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/texmf/tex/latex make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/scripts' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/bin mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/include/R make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include/R_ext' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/include/R/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/blas' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/tre' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/tre' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/tzone' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/tzone' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/xdr' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/xdr' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/intl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra/intl' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/pkgconfig make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/exec make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/lib make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/modules make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' installing R manuals in PDF format ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' mkdir -p -- /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/info /usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/manual' + rm -f /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/info/dir + mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R + install -p CAPABILITIES /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R + cd src/nmath/standalone + make install DESTDIR=/builddir/build/BUILD/R-4.4.1-build/BUILDROOT make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/src/include' + mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/etc/ld.so.conf.d + echo /usr/lib64/R/lib + mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/library + touch -r README /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R/CAPABILITIES + touch -r README doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf + touch -r README /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/bin/R + sed -i 's|\..\/\..|/usr/lib64/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R/html/packages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/bkde.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/bkde2D.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/bkfe.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/dpih.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/dpik.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/dpill.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/KernSmooth/html/locpoly.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Aids2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Animals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Boston.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Cars93.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Cushings.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/DDT.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/GAGurine.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Insurance.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/MASS-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Melanoma.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Null.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/OME.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Pima.tr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Rabbit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Rubber.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/SP500.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Sitka.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Sitka89.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Skye.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/Traffic.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/UScereal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/UScrime.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/VA.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/abbey.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/accdeaths.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/addterm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/anorexia.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/anova.negbin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/area.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/bacteria.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/bandwidth.nrd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/bcv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/beav1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/beav2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/biopsy.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/birthwt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/boxcox.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/cabbages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/caith.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/cats.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/cement.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/chem.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/con2tr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/confint.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/contr.sdif.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/coop.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/corresp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/cov.rob.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/cov.trob.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/cpus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/crabs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/deaths.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/denumerate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/dose.p.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/drivers.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/dropterm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/eagles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/epil.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/eqscplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/farms.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/fgl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/fitdistr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/forbes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/fractions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/galaxies.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/gamma.dispersion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/gamma.shape.glm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/gehan.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/genotype.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/geyser.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/gilgais.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/ginv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/glm.convert.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/glm.nb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/glmmPQL.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/hills.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/hist.scott.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/housing.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/huber.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/hubers.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/immer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/isoMDS.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/kde2d.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/lda.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/ldahist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/leuk.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/lm.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/lm.ridge.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/loglm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/loglm1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/logtrans.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/lqs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/mammals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/mca.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/mcycle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/menarche.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/michelson.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/minn38.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/motors.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/muscle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/mvrnorm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/negative.binomial.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/newcomb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/nlschools.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/npk.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/npr1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/oats.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/painters.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/pairs.lda.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/parcoord.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/petrol.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/phones.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/plot.lda.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/plot.mca.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/polr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/predict.glmmPQL.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/predict.lda.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/predict.lqs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/predict.mca.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/predict.qda.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/profile.glm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/qda.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/quine.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/rational.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/renumerate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/rlm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/rms.curv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/rnegbin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/road.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/rotifer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/sammon.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/ships.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/shoes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/shrimp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/shuttle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/snails.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/stdres.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/steam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/MASS/html/stepAIC.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/cbind2-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/chol-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/chol2inv-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/coerce-methods-SparseM.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/coerce-methods-graph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/colSums-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/condest.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dgCMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dgRMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dgTMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dgeMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dpoMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/drop0.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dsCMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dsRMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dsparseMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dsyMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dtCMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/dtRMatrix-class-sparse.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/isSymmetric-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/isTriangular-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/kronecker-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/ldenseMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/ldiMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/lgeMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/lsparseMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/lsyMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/ltrMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/lu-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/mat2triplet.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/matmult-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/nMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/ndenseMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/nearPD.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/ngeMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/nnzero-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/norm-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/nsparseMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/nsyMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/ntrMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/pMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/pack-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/packedMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/printSpMatrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/qr-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/rankMatrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/rcond-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/spMatrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/sparse.model.matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/sparseLU-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/Matrix/html/sparseMatrix-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Rhome.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Round.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/S3method.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Signals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Special.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/StackOverflows.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Startup.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Syntax.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Sys.getenv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Sys.getpid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Sys.glob.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/Sys.info.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/apply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/args.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/array.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/array2DF.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/as.Date.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/as.POSIXlt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/as.data.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/as.environment.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/as.function.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/asplit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/assign.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/assignOps.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/attach.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/attr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/attributes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/autoload.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/backsolve.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/balancePOSIXlt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/base-defunct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/base-deprecated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/bindenv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/bitwise.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/body.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/bquote.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/browser.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/browserText.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/builtins.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/by.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/c.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/call.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/callCC.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/capabilities.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/cat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/cbind.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/char.expand.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/character.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/charmatch.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/chartr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/chkDots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/chol.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/chol2inv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/chooseOpsMethod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/col.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/colSums.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/colnames.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/commandArgs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/comment.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/complex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/conditions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/conflicts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/connections.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/contributors.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/copyright.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/crossprod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/cumsum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/curlGetHeaders.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/cut.POSIXt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/cut.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/data.class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/data.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/data.matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dataframeHelpers.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/date.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dcf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/debug.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/declare.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/delayedAssign.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/deparse.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/deparseOpts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/det.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/detach.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dev.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/diag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/diff.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/difftime.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dimnames.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/do.call.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dontCheck.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/double.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dput.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/drop.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/droplevels.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dump.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/duplicated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/dynload.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/eapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/eigen.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/encodeString.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/environment.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/eval.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/exists.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/expand.grid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/expression.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/extSoftVersion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/factor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ifelse.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/integer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/interaction.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/interactive.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/is.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/is.recursive.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/is.single.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/is.unsorted.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/isS4.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/isSymmetric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/jitter.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/kappa.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/nargs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/nchar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/nlevels.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/noquote.html + for i in 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sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ns-dblcolon.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ns-hooks.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ns-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ns-load.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ns-reflect.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/ns-topenv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/numeric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/numeric_version.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/octmode.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/on.exit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/options.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/order.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/outer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/parse.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/paste.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/path.expand.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/pcre_config.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/pipeOp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/plot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/pmatch.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/polyroot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/pos.to.env.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/pretty.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/print.dataframe.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/print.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/print.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/prmatrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/proc.time.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/prod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/proportions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/pushBack.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/qr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/qraux.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/quit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/range.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rank.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/raw.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rawConnection.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rawConversion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/readBin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/readChar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/readLines.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/readRDS.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/readRenviron.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/readline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/reg.finalizer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/regex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/regmatches.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rep.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/replace.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rev.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/round.POSIXt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/row.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/row.names.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/rowsum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sQuote.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sample.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/save.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/scale.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/scan.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/search.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/seek.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/seq.Date.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/seq.POSIXt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/seq.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sequence.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/serialize.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/setTimeLimit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sets.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/shQuote.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/showConnections.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sign.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sink.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/slice.index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/slotOp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/socketSelect.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/solve.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sort.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sort_by.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/source.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/split.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sprintf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/srcfile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/standardGeneric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/startsWith.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/stop.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/stopifnot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/strptime.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/strrep.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/strsplit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/strtoi.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/strtrim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/structure.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/strwrap.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/subset.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/substitute.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/substr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/summary.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/svd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sweep.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/switch.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sys.parent.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/sys.source.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/system.file.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/system.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/system.time.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/system2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/t.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/table.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/tabulate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/tapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/taskCallback.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/taskCallbackManager.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/taskCallbackNames.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/tempfile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/textconnections.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/tilde.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/timezones.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/toString.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/trace.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/traceback.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/tracemem.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/transform.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/trimws.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/try.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/typeof.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/unique.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/units.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/unlink.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/unlist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/unname.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/use.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/userhooks.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/utf8Conversion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/validUTF8.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/vector.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/warning.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/warnings.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/weekday.POSIXt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/which.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/which.min.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/with.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/withVisible.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/write.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/writeLines.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/xtfrm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/zMachine.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/zScript.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/zapsmall.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/zpackages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/base/html/zutils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/EEF.profile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/Imp.Estimates.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/abc.ci.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/acme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/aids.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/aircondit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/amis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/aml.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/beaver.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/bigcity.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/boot-practicals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/boot.array.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/boot.ci.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/boot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/brambles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/breslow.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/calcium.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cane.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/capability.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/catsM.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cav.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cd4.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cd4.nested.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/censboot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/channing.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/claridge.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cloth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/co.transfer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/coal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/corr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cum3.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/cv.glm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/darwin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/dogs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/downs.bc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/ducks.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/empinf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/envelope.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/exp.tilt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/fir.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/freq.array.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/frets.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/glm.diag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/glm.diag.plots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/gravity.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/hirose.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/imp.weights.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/inv.logit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/islay.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/jack.after.boot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/k3.linear.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/linear.approx.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/lines.saddle.distn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/logit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/manaus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/melanoma.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/motor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/neuro.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/nitrofen.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/nodal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/norm.ci.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/nuclear.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/paulsen.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/plot.boot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/poisons.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/polar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/print.boot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/print.bootci.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/print.saddle.distn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/print.simplex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/remission.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/saddle.distn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/saddle.distn.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/saddle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/salinity.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/simplex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/simplex.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/smooth.f.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/sunspot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/survival.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/tau.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/tilt.boot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/tsboot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/tuna.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/urine.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/var.linear.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/boot/html/wool.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/SOM.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/batchSOM.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/condense.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/knn.cv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/knn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/knn1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/lvq1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/lvq2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/lvq3.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/lvqinit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/lvqtest.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/multiedit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/olvq1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/reduce.nn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/class/html/somgrid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/agnes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/agnes.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/agriculture.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/animals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/bannerplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/chorSub.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/clara.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/clara.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/clusGap.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/clusplot.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/clusplot.partition.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/cluster-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/coef.hclust.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/daisy.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/diana.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/dissimilarity.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/ellipsoidhull.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/fanny.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/fanny.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/flower.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/medoids.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/mona.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/mona.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/pam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/pam.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/partition.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/plantTraits.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/plot.agnes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/plot.diana.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/plot.mona.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/plot.partition.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/pltree.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/pluton.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/predict.ellipsoid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.agnes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.clara.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.diana.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.dissimilarity.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.fanny.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.mona.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/print.pam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/ruspini.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/silhouette.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/sizeDiss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/summary.agnes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/summary.clara.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/summary.diana.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/summary.mona.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/summary.pam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/twins.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/volume.ellipsoid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/votes.repub.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/cluster/html/xclara.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/codetools/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/codetools/html/checkUsage.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/codetools/html/codetools.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/codetools/html/findGlobals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/codetools/html/showTree.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/compiler/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/compiler/html/compile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/AirPassengers.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/BJsales.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/BOD.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/ChickWeight.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/DNase.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/EuStockMarkets.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Formaldehyde.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/HairEyeColor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Harman23.cor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Harman74.cor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Indometh.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/InsectSprays.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/JohnsonJohnson.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/LakeHuron.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/LifeCycleSavings.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Loblolly.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Nile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Orange.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/OrchardSprays.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/PlantGrowth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Puromycin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Theoph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/Titanic.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/ToothGrowth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/UCBAdmissions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/UKDriverDeaths.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/UKLungDeaths.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/UKgas.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/USAccDeaths.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/USArrests.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/USJudgeRatings.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/VADeaths.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/WWWusage.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/WorldPhones.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/ability.cov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/airmiles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/airquality.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/anscombe.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/attenu.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/attitude.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/austres.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/beavers.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/cars.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/chickwts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/co2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/crimtab.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/datasets-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/discoveries.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/esoph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/euro.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/eurodist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/faithful.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/freeny.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/infert.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/iris.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/islands.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/lh.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/longley.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/lynx.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/morley.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/mtcars.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/nhtemp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/nottem.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/npk.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/occupationalStatus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/precip.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/presidents.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/pressure.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/quakes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/randu.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/rivers.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/rock.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/sleep.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/stackloss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/state.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/sunspot.month.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/sunspot.year.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/sunspots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/swiss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/treering.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/trees.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/uspop.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/volcano.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/warpbreaks.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/women.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/datasets/html/zCO2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/lookup.xport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.S.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.arff.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.dbf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.dta.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.epiinfo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.mtp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.octave.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.spss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.ssd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.systat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/read.xport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/write.arff.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/write.dbf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/write.dta.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/foreign/html/write.foreign.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/Devices.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/Hershey.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/Japanese.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/Type1Font.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/adjustcolor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/as.raster.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/axisTicks.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/boxplot.stats.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/bringToTop.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/cairo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/cairoSymbolFont.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/check.options.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/chull.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/cm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/col2rgb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/colorRamp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/colors.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/contourLines.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/convertColor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/densCols.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev.capabilities.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev.capture.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev.flush.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev.interactive.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev.size.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/dev2bitmap.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/devAskNewPage.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/embedFonts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/extendrange.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/glyphInfo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/grDevices-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/grDevices-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/grSoftVersion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/gray.colors.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/gray.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/hcl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/hsv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/make.rgb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/msgWindow.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/n2mfrow.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/nclass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/palette.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/palettes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/pdf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/pdf.options.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/pictex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/plotmath.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/png.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/postscript.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/postscriptFonts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/pretty.Date.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/ps.options.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/quartz.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/quartzFonts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/recordGraphics.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/recordplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/rgb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/rgb2hsv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/savePlot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/trans3d.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/windows.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/windows.options.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/windowsFonts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/x11.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/x11Fonts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/xfig.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/xy.coords.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/xyTable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grDevices/html/xyz.coords.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/abline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/arrows.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/assocplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/axTicks.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/axis.POSIXct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/axis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/barplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/box.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/boxplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/boxplot.matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/bxp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/cdplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/clip.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/contour.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/convertXY.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/coplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/curve.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/dotchart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/filled.contour.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/fourfoldplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/graphics-defunct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/graphics-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/grid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/hist.POSIXt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/hist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/identify.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/image.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/layout.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/legend.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/lines.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/locator.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/matplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/mosaicplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/mtext.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/pairs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/panel.smooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/par.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/persp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/pie.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.dataframe.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.design.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.factor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.raster.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.table.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/plot.window.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/polypath.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/rasterImage.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/rect.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/rug.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/screen.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/segments.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/smoothScatter.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/spineplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/stars.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/stem.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/stripchart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/strwidth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/sunflowerplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/symbols.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/text.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/title.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/units.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/xspline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/graphics/html/zAxis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/Grid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/absolute.size.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/arrow.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/as.mask.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/calcStringMetric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/current.viewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/dataViewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/depth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/deviceLoc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/drawDetails.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/editDetails.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/editViewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/explode.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/gEdit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/gPath.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/getNames.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/gpar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid-defunct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.DLapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.add.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.bezier.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.cap.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.circle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.clip.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.convert.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.copy.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.curve.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.delay.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.display.list.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.draw.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.edit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.force.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.function.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.get.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.glyph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.grab.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.grep.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.place.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.plot.and.legend.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.points.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.polygon.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.pretty.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.raster.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.record.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.rect.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.refresh.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.remove.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.reorder.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.roundrect.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.segments.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.set.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.show.layout.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.show.viewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.stroke.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.text.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.xaxis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.xspline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grid.yaxis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/gridCoords.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grobCoords.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grobName.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grobWidth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/grobX.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/legendGrob.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/makeContent.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/patterns.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/plotViewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/resolveRasterSize.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/showGrob.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/showViewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/stringWidth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/unit.c.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/unit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/unit.length.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/unit.pmin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/unit.rep.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/unitType.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/valid.just.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/validDetails.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/viewport.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/viewportTransform.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/viewports.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/vpPath.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/widthDetails.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/xDetails.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/grid/html/xsplinePoints.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/Lattice.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/Rows.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/USMortality.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/axis.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/banking.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/barchart.table.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/barley.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/cloud.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/draw.colorkey.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/draw.key.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/environmental.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/ethanol.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/histogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/interaction.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/lattice.options.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/latticeParseFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/level.colors.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/levelplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/llines.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/lset.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/make.groups.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/melanoma.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/oneway.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/packet.panel.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.axis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.barchart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.bwplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.cloud.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.densityplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.dotplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.functions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.histogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.levelplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.loess.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.number.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.pairs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.parallel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.qqmath.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.qqmathline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.smoothScatter.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.spline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.stripplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.superpose.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.violin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/panel.xyplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/prepanel.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/prepanel.functions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/print.trellis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/qq.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/qqmath.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/rfs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/shingles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/simpleKey.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/simpleTheme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/singer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/splom.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/standard.theme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/strip.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/update.trellis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/utilities.3d.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/xyplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/lattice/html/xyplot.ts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/BasicClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Classes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Classes_Details.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Documentation.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/EnvironmentClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/GenericFunctions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Introduction.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/LanguageClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/LinearMethodsList-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/MethodDefinition-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/MethodsList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Methods_Details.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/Methods_for_S3.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/NextMethod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/RClassUtils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/RMethodUtils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/S3Part.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/S4groupGeneric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/SClassExtension-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/StructureClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/TraceClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/as.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/callGeneric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/canCoerce.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/cbind2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/className.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/classRepresentation-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/classesToAM.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/dotsMethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/evalSource.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/findClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/findMethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/fixPrevious.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/genericFunction-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/getClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/getMethod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/getPackageName.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/hasArg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/implicitGeneric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/inheritedSlotNames.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/initialize-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/is.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/isSealedMethod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/languageEl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/localRefClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/method.skeleton.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/methodUtilities.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/methods-defunct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/methods-deprecated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/methods-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/new.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/nonStructure-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/promptClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/promptMethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/refClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/removeMethod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/representation.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/selectSuperClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setAs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setClassUnion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setGeneric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setGroupGeneric.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setIs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setLoadActions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setMethod.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setOldClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/setSClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/show.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/showMethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/signature-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/slot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/stdRefClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/substituteDirect.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/testInheritedMethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/validObject.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/methods/html/zBasicFunsList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Beta.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/FFdes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/NCV.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Predict.matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Rrank.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Sl.repara.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Sl.setup.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/Tweedie.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/XWXd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/anova.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/bam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/bam.update.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/bandchol.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/blas.thread.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/bug.reports.mgcv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/cSplineDes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/chol.down.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/choose.k.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/cnorm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/columb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/concurvity.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/coxpht.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/dDeta.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/dpnorm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/exclude.too.far.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/extract.lme.cov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/factor.smooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/family.mgcv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/fix.family.link.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/fixDependence.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/formXtViX.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/formula.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/fs.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/full.score.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.check.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.convergence.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.fit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.fit3.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.fit5.post.proc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.mh.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.models.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.outer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.reparam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.scale.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.selection.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.side.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam.vcomp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gam2objective.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gamObject.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gamSim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gamlss.etamu.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gamlss.gH.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gamm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gammals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gaulss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/get.var.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gevlss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gfam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ginla.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/gumbls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/identifiability.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/in.out.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/inSide.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/influence.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/initial.sp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/interpret.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/jagam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/k.check.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ldTweedie.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ldetS.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/linear.functional.terms.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/logLik.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ls.size.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/magic.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/magic.post.proc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mgcv-FAQ.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mgcv-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mgcv-parallel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mini.roots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/missing.data.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/model.matrix.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mono.con.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mroot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/multinom.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/mvn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/negbin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/new.name.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/notExp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/notExp2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/null.space.dimension.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ocat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/one.se.rule.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/pcls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/pdIdnot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/pdTens.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/pen.edf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/place.knots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/plot.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/polys.plot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/predict.bam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/predict.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/print.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/psum.chisq.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/qq.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/rTweedie.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/random.effects.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/residuals.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/rig.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/rmvn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/s.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/scat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/sdiag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/shash.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/single.index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/slanczos.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.bs.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.fs.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.gp.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.mrf.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.ps.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.re.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.so.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.sos.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.sz.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.t2.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.construct.tp.smooth.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.info.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth.terms.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smooth2random.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/smoothCon.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/sp.vcov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/spasm.construct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/step.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/summary.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/t2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/te.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/tensor.prod.model.matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/totalPenaltySpace.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/trichol.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/trind.generator.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/twlss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/uniquecombs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/vcov.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/vis.gam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ziP.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/html/ziplss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/ACF.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/ACF.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/ACF.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Alfalfa.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Dim.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Dim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Dim.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Earthquake.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Extract.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Fatigue.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Gasoline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Glucose.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Initialize.glsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Initialize.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Initialize.lmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Initialize.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Initialize.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/LDEsysMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Machines.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/MathAchSchool.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/MathAchieve.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Matrix.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Matrix.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Meat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Milk.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Muscle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Names.formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Names.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Names.pdBlocked.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Names.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Names.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Nitrendipene.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Oats.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Orthodont.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Ovary.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Oxboys.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Oxide.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/PBG.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Phenobarb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Pixel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Quinidine.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Rail.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/RatPupWeight.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Relaxin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Remifentanil.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Soybean.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Spruce.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Tetracycline1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Tetracycline2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/VarCorr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.corExp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.corGaus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.corLin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.corRatio.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.corSpher.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.default.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Variogram.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Wafer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Wheat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/Wheat2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/allCoef.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/anova.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/anova.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/asOneFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/asTable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/augPred.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/balancedGrouped.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/bdf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.gnls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.modelStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/coef.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/collapse.groupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/collapse.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/compareFits.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/comparePred.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corAR1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corARMA.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corCAR1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corCompSymm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corExp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corFactor.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corFactor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corGaus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corLin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corMatrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corNatural.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corRatio.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corSpatial.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corSpher.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/corSymm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/ergoStool.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fdHess.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fitted.glsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fitted.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fitted.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fixed.effects.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/fixef.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/formula.pdBlocked.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/formula.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/formula.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getCovariate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getCovariateFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getData.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getData.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getData.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.data.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroups.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getGroupsFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getResponse.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getResponseFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/getVarCov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gls-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/glsControl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/glsObject.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/glsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gnls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gnlsControl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gnlsObject.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gnlsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/groupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/gsummary.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/intervals.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/intervals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/intervals.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/intervals.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/isBalanced.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/isInitialized.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lmList.groupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lme.groupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lme.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lmeControl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lmeObject.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/lmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logDet.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logDet.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logDet.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logDet.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.glsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.gnls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/logLik.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/needUpdate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlme-deprecated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlme.nlsList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlmeControl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlmeObject.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlsList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/nlsList.selfStart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pairs.compareFits.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pairs.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pairs.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdBlocked.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdCompSymm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdConstruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdDiag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdFactor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdIdent.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdLogChol.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdMatrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdNatural.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pdSymm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/phenoModel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.ACF.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.Variogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.augPred.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.compareFits.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/plot.ranef.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/pooledSD.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/predict.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/predict.gnls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/predict.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/predict.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/predict.nlme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/print.summary.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/print.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/qqnorm.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/qqnorm.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/quinModel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/random.effects.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/ranef.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/ranef.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/recalc.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/recalc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/recalc.modelStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/recalc.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/recalc.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.glsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/simulate.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/solve.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/solve.reStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/splitFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.corStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.lmList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.lme.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.modelStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.nlsList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.pdMat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/summary.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/update.modelStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/update.varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varClasses.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varComb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varConstPower.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varConstProp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varExp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varFixed.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varFunc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varIdent.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varPower.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varWeights.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/class.ind.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/multinom.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/nnet.Hess.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/nnet.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/predict.nnet.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/nnet/html/which.is.max.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/RngStream.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/children.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/clusterApply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/detectCores.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/makeCluster.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/mcaffinity.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/mcfork.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/mclapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/mcparallel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/parallel-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/pvec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/parallel/html/splitIndices.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/car.test.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/car90.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/cu.summary.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/kyphosis.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/labels.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/meanvar.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/na.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/path.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/plot.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/plotcp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/post.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/predict.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/print.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/printcp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/prune.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/residuals.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/rpart-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/rpart.control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/rpart.exp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/rpart.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/rsq.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/snip.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/solder.balance.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/stagec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/summary.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/text.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/rpart/html/xpred.rpart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/Kaver.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/Kenvl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/Kfn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/Psim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/SSI.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/Strauss.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/anova.trls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/correlogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/expcov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/ppgetregion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/ppinit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/pplik.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/ppregion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/predict.trls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/prmat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/semat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/surf.gls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/surf.ls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/trls.influence.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/trmat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/spatial/html/variogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/asVector.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/backSpline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/bs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/interpSpline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/ns.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/periodicSpline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/polySpline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/predict.bSpline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/predict.bs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/splineDesign.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/splineKnots.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/splineOrder.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/splines-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/splines/html/xyVector.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/AIC.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ARMAacf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ARMAtoMA.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Beta.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Binomial.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Cauchy.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Chisquare.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Distributions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Exponential.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/Fdist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/GammaDist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/acf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/acf2AR.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/add1.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/addmargins.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/aggregate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/alias.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/anova.glm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/anova.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/anova.lm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/anova.mlm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ansari.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/aov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/approxfun.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ar.ols.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/arima.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/arima.sim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/arima0.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/as.hclust.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/asOneSidedFormula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ave.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/bandwidth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/bartlett.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/binom.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/biplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/biplot.princomp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/birthday.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/box.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/embed.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/expand.model.frame.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/extractAIC.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/factanal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/factor.scope.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/family.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/fft.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/filter.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/fisher.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/fitted.values.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/fivenum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/fligner.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/formula.nls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/friedman.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ftable.formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ftable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/getInitial.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/glm.control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/glm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/glm.summaries.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/hclust.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/heatmap.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/identify.hclust.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/influence.measures.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/integrate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/interaction.plot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/is.empty.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/isoreg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/kernapply.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/kernel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/kmeans.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/kruskal.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ks.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ksmooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/lag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/lowess.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ls.diag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ls.print.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/lsfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/na.action.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/na.contiguous.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/na.fail.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nafns.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/naprint.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nextn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nlm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nlminb.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nls.control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/nobs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/numericDeriv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/offset.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/oneway.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/optim.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/optimize.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/order.dendrogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/p.adjust.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/pairwise.prop.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/pairwise.t.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/pairwise.table.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.HoltWinters.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.acf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.density.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.isoreg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.lm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.ppr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.profile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.profile.nls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.spec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.stepfun.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/plot.ts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/poisson.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/poly.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/power.anova.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/power.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/power.prop.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/power.t.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/pp.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ppoints.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ppr.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/prcomp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/predict.HoltWinters.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/predict.loess.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/predict.nls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/predict.smooth.spline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/preplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/princomp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/print.power.htest.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/print.ts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/printCoefmat.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/profile.glm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/profile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/profile.nls.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/proj.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/prop.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/prop.trend.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/qqnorm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/quade.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/quantile.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/r2dtable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/rWishart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/read.ftable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/rect.hclust.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/relevel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/reorder.dendrogram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/reorder.factor.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/replications.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/reshape.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/residuals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/runmed.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/scatter.smooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/screeplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/sd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/se.contrast.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/selfStart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/setNames.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/shapiro.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/sigma.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/simulate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/smooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/smooth.spline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/smoothEnds.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/sortedXyData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/spec.ar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/spec.pgram.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/spec.taper.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/spectrum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/splinefun.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/start.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stat.anova.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stats-defunct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stats-deprecated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stats-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/step.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stepfun.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/stlmethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/summary.aov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/termplot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/terms.formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/terms.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/terms.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/time.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/toeplitz.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ts-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ts.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ts.plot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/ts.union.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/tsSmooth.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/tsdiag.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/tsp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/uniroot.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/update.formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/update.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/var.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/varimax.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/vcov.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/weighted.mean.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/weighted.residuals.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/weights.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/wilcox.test.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/window.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/xtabs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats/html/zC.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/coef-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/confint-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/logLik-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/mle-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/mle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/plot-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/profile-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/profile.mle-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/show-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/stats4-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/summary-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/summary.mle-class.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/update-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/stats4/html/vcov-methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/00Index.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/Surv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/Surv2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/Surv2data.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/Survmethods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/aareg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/aeqSurv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/aggregate.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/agreg.fit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/aml.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/anova.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/attrassign.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/basehaz.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/bladder.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/blogit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/brier.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/cch.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/cgd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/cgd0.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/cipoisson.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/clogit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/cluster.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/colon.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/concordance.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/concordancefit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/cox.zph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxph.control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxph.detail.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxph.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxph.wtest.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxphms.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/coxsurv.fit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/diabetic.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/dsurvreg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/finegray.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/flchain.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/frailty.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/gbsg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/heart.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/hoel.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/is.ratetable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/kidney.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/levels.Surv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/lines.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/logLik.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/logan.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/lung.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/mgus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/mgus2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/model.frame.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/model.matrix.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/myeloid.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/myeloma.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/nafld.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/neardate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/nsk.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/nwtco.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/ovarian.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/pbc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/pbcseq.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/plot.aareg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/plot.cox.zph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/plot.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/predict.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/predict.survreg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/print.aareg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/print.summary.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/print.summary.survexp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/print.summary.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/print.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/pseudo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/pspline.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/pyears.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/quantile.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/ratetable.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/ratetableDate.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/rats.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/rats2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/reliability.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/residuals.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/residuals.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/residuals.survreg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/retinopathy.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/rhDNase.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/ridge.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/rotterdam.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/royston.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/rttright.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/solder.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/stanford2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/statefig.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/strata.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/summary.aareg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/summary.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/summary.pyears.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/summary.survexp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/summary.survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survSplit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survcheck.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survcondense.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survdiff.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survexp.fit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survexp.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survexp.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survexp.us.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfit.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfit.formula.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfit.matrix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfit.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfit0.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survfitcoxph.fit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survival-deprecated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survival-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survobrien.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survreg.control.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survreg.distributions.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survreg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survreg.object.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/survregDtest.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/tcut.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/tmerge.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/tobin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/transplant.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/udca.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/untangle.specials.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/uspop2.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/vcov.coxph.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/veteran.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/survival/html/xtfrm.Surv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/checkRdaFiles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/checkTnF.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/checkVignettes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/check_packages_in_dir.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/codoc.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/compactPDF.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/delimMatch.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/dependsOnPkgs.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/encoded.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/fileutils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/find_gs_cmd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/getVignetteInfo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/loadRdMacros.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/makeLazyLoading.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/make_translations_pkg.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/makevars.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/matchConcordance.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/md5sum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/package_dependencies.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/parseLatex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/parse_Rd.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/pkg2HTML.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/tools/html/print.via.format.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/View.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/adist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/alarm.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/apropos.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/aregexec.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/arrangeWindows.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/askYesNo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/aspell-utils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/aspell.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/available.packages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/bibentry.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/browseEnv.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/browseURL.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/browseVignettes.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/bug.report.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/capture.output.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/changedFiles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/charClass.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/choose.dir.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/choose.files.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/chooseBioCmirror.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/chooseCRANmirror.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/citEntry.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/citation.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/cite.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/clipboard.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/close.socket.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/combn.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/compareVersion.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/contrib.url.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/count.fields.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/create.post.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/data.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/dataentry.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/debugcall.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/debugger.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/edit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/example.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/file.edit.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/filetest.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/findCRANmirror.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/findLineNum.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/fix.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/flush.console.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/format.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/getAnywhere.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/getFromNamespace.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/getParseData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/getS3method.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/getWindowsHandle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/getWindowsHandles.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/glob2rx.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/globalVariables.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/hasName.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/hashtab.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/head.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/help.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/help.request.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/help.search.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/help.start.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/hsearch-utils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/install.packages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/installed.packages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/isS3method.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/isS3stdGen.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/localeToCharset.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/ls_str.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/maintainer.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/make.packages.html.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/make.socket.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/memory.size.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/menu.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/methods.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/mirrorAdmin.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/modifyList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/news.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/nsl.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/object.size.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/package.skeleton.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/packageDescription.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/packageName.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/packageStatus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/page.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/person.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/personList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/process.events.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/prompt.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/promptData.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/promptPackage.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/rcompgen.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/read.DIF.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/read.fortran.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/read.fwf.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/read.socket.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/read.table.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/readRegistry.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/recover.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/relist.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/remove.packages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/removeSource.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/roman.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/rtags.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/savehistory.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/select.list.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/sessionInfo.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/setRepositories.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/setWindowTitle.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/shortPathName.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/sourceutils.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/stack.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/str.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/strcapture.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/summaryRprof.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/tar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/toLatex.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/txtProgressBar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/type.convert.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/untar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/unzip.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/update.packages.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/upgrade.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/url.show.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/utils-defunct.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/utils-deprecated.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/utils-internal.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/utils-package.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/vignette.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/warnErrList.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/winDialog.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/winMenus.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/winProgressBar.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/winextras.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/write.table.html + for i in /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/utils/html/zip.html + chmod +x /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/R/sh/echo.sh + chmod +x /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/BATCH /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/COMPILE /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/INSTALL /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/LINK /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/R /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/REMOVE /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rcmd /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rd2pdf /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rdconv /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rdiff /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rprof /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rscript /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/SHLIB /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Stangle /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Sweave /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/build /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/check /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/config /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/exec /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/javareconf /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/libtool /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/mkinstalldirs /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/pager /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/rtags + chmod -x /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/library/mgcv/CITATION /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/doc/R/CAPABILITIES + '[' '!' -d /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/include ']' ~/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R ~/build/BUILD/R-4.4.1-build/R-4.4.1 + pushd /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R + ln -s ../../include/R include + popd ~/build/BUILD/R-4.4.1-build/R-4.4.1 + for i in tex/latex bibtex/bib bibtex/bst + mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/texlive/texmf-dist/tex/latex + cd /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/texlive/texmf-dist/tex/latex + ln -s /usr/share/R/texmf/tex/latex R + for i in tex/latex bibtex/bib bibtex/bst + mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/texlive/texmf-dist/bibtex/bib + cd /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/texlive/texmf-dist/bibtex/bib + ln -s /usr/share/R/texmf/bibtex/bib R + for i in tex/latex bibtex/bib bibtex/bst + mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/texlive/texmf-dist/bibtex/bst + cd /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/texlive/texmf-dist/bibtex/bst + ln -s /usr/share/R/texmf/bibtex/bst R + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 4.4.1-5.fc42 --unique-debug-suffix -4.4.1-5.fc42.aarch64 --unique-debug-src-base R-4.4.1-5.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-4.4.1-build/R-4.4.1 find-debuginfo: starting Extracting debug info from 33 files DWARF-compressing 33 files sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-4.4.1-5.fc42.aarch64 20839 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs --files /usr/lib64/R/bin/ mangling shebang in /usr/bin/R from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/share/R/sh/echo.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/R-4.4.1-build/BUILDROOT /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/libRmath.a: replacing with normalized version Scanned 605 directories and 13930 files, processed 11368 inodes, 1 modified (1 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-4.4.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.PZ4STT + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.4.1 + ulimit -s 16384 + TZ=Europe/Paris + make check make[1]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests/Examples' Testing examples for package ‘base’ Testing examples for package ‘tools’ comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK Testing examples for package ‘utils’ Testing examples for package ‘grDevices’ comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK Testing examples for package ‘graphics’ comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK Testing examples for package ‘stats’ comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK Testing examples for package ‘datasets’ comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK Testing examples for package ‘methods’ Testing examples for package ‘grid’ comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK Testing examples for package ‘splines’ comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK Testing examples for package ‘stats4’ comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK Testing examples for package ‘tcltk’ Testing examples for package ‘compiler’ Testing examples for package ‘parallel’ make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests/Examples' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running strict specific tests make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'structure.R' ... OK comparing 'structure.Rout' to './structure.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running sloppy specific tests make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK running code in 'eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' checking Sys.timezone ... make[4]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running code in 'timezone.R' ... OK make[4]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running regression tests ... make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running code in 'array-subset.R' ... OK running code in 'classes-methods.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-1e.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'd-p-q-r-tst-2.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... OK comparing 'reg-plot-latin1.pdf' to './reg-plot-latin1.pdf.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running tests of Internet functions make[3]: Entering directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,153 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > ## As virtually all http sites redirect to https:, we only test the latter > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("https://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections > > zz <- url("https://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > [24] "" > > close(zz) > > > > # and via read.table, using an r-project.org site > > read.table("https://developer.R-project.org/inet-tests/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > > > showConnections(all = TRUE) > description class mode text isopen can read can write > 0 "stdin" "terminal" "r" "text" "opened" "yes" "no" > 1 "stdout" "terminal" "w" "text" "opened" "no" "yes" > 2 "stderr" "terminal" "w" "text" "opened" "no" "yes" > > OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' make[1]: Leaving directory '/builddir/build/BUILD/R-4.4.1-build/R-4.4.1/tests' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-4.4.1-5.fc42.aarch64 Processing files: R-core-4.4.1-5.fc42.aarch64 warning: Duplicate build-ids /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/bin/Rscript and /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rscript warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bib/R -> /usr/share/R/texmf/bibtex/bib warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bst/R -> /usr/share/R/texmf/bibtex/bst warning: absolute symlink: /usr/share/texlive/texmf-dist/tex/latex/R -> /usr/share/R/texmf/tex/latex Provides: R(ABI) = 4.4 R(KernSmooth) = 2.23.24 R(MASS) = 7.3.60.2 R(Matrix) = 1.7.0 R(base) = 4.4.1 R(boot) = 1.3.30 R(class) = 7.3.22 R(cluster) = 2.1.6 R(codetools) = 0.2.20 R(compiler) = 4.4.1 R(datasets) = 4.4.1 R(foreign) = 0.8.86 R(grDevices) = 4.4.1 R(graphics) = 4.4.1 R(grid) = 4.4.1 R(lattice) = 0.22.6 R(methods) = 4.4.1 R(mgcv) = 1.9.1 R(nlme) = 3.1.164 R(nnet) = 7.3.19 R(parallel) = 4.4.1 R(rpart) = 4.1.23 R(spatial) = 7.3.17 R(splines) = 4.4.1 R(stats) = 4.4.1 R(stats4) = 4.4.1 R(survival) = 3.6.4 R(tcltk) = 4.4.1 R(tools) = 4.4.1 R(translations) = 4.4.1 R(utils) = 4.4.1 R-KernSmooth = 2.23.24 R-MASS = 7.3.60.2 R-Matrix = 1.7.0 R-base = 4.4.1 R-boot = 1.3.30 R-class = 7.3.22 R-cluster = 2.1.6 R-codetools = 0.2.20 R-compiler = 4.4.1 R-core = 4.4.1-5.fc42 R-core(aarch-64) = 4.4.1-5.fc42 R-datasets = 4.4.1 R-foreign = 0.8.86 R-grDevices = 4.4.1 R-graphics = 4.4.1 R-grid = 4.4.1 R-lattice = 0.22.6 R-methods = 4.4.1 R-mgcv = 1.9.1 R-nlme = 3.1.164 R-nnet = 7.3.19 R-parallel = 4.4.1 R-rpart = 4.1.23 R-spatial = 7.3.17 R-splines = 4.4.1 R-stats = 4.4.1 R-stats4 = 4.4.1 R-survival = 3.6.4 R-tcltk = 4.4.1 R-tools = 4.4.1 R-translations = 4.4.1 R-utils = 4.4.1 config(R-core) = 4.4.1-5.fc42 libR.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdeflate.so.0()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.74()(64bit) libicuuc.so.74()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libtirpc.so.3()(64bit) libtirpc.so.3(TIRPC_0.3.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: R-Matrix < 0.999375-7 Processing files: R-core-devel-4.4.1-5.fc42.aarch64 Provides: R-Matrix-devel = 1.7.0 R-core-devel = 4.4.1-5.fc42 R-core-devel(aarch-64) = 4.4.1-5.fc42 pkgconfig(libR) = 4.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Obsoletes: R-Matrix-devel < 0.999375-7 Recommends: devscripts-checkbashisms qpdf tex(inconsolata.sty) tex(latex) texinfo-tex tidy Processing files: R-devel-4.4.1-5.fc42.aarch64 Processing files: R-java-4.4.1-5.fc42.aarch64 Processing files: R-java-devel-4.4.1-5.fc42.aarch64 Processing files: libRmath-4.4.1-5.fc42.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ySac9w + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + cd R-4.4.1 + LICENSEDIR=/builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/licenses/libRmath + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/licenses/libRmath + cp -pr /builddir/build/BUILD/R-4.4.1-build/R-4.4.1/doc/COPYING /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/share/licenses/libRmath + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRmath = 4.4.1-5.fc42 libRmath(aarch-64) = 4.4.1-5.fc42 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) rtld(GNU_HASH) Processing files: libRmath-devel-4.4.1-5.fc42.aarch64 Provides: libRmath-devel = 4.4.1-5.fc42 libRmath-devel(aarch-64) = 4.4.1-5.fc42 pkgconfig(libRmath) = 4.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: libRmath-static-4.4.1-5.fc42.aarch64 Provides: libRmath-static = 4.4.1-5.fc42 libRmath-static(aarch-64) = 4.4.1-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debugsource-4.4.1-5.fc42.aarch64 Provides: R-debugsource = 4.4.1-5.fc42 R-debugsource(aarch-64) = 4.4.1-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debuginfo-4.4.1-5.fc42.aarch64 Provides: R-debuginfo = 4.4.1-5.fc42 R-debuginfo(aarch-64) = 4.4.1-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(aarch-64) = 4.4.1-5.fc42 Processing files: R-core-debuginfo-4.4.1-5.fc42.aarch64 warning: Duplicate build-ids /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib/debug/usr/bin/Rscript-4.4.1-5.fc42.aarch64.debug and /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/R/bin/Rscript-4.4.1-5.fc42.aarch64.debug Provides: R-core-debuginfo = 4.4.1-5.fc42 R-core-debuginfo(aarch-64) = 4.4.1-5.fc42 debuginfo(build-id) = 03c1e1f0881782f13ae404cfcdd7bd66315f5780 debuginfo(build-id) = 0a41fd43631aafb4c8df09f019128b052b91605c debuginfo(build-id) = 13bebb87afc86bd0a0536b5e154bfc68cb43e15c debuginfo(build-id) = 1bf8f7136b27c262b37be8c8e9d936b7eff62e8c debuginfo(build-id) = 22fb76e101824159fd1eed67c798c0583ba36ae1 debuginfo(build-id) = 463139873807cdd945d4e05e7df57bf335237a24 debuginfo(build-id) = 476fc1905a0eab6902c2539764a75a94973b5f90 debuginfo(build-id) = 4f26eacf2eb90a785a04a3a051ccaafa70370735 debuginfo(build-id) = 53ca75c17219c4cd1505b20ecad55e5007c8ca9e debuginfo(build-id) = 57267c24af675770c23a28827e9d2be3989e0a8a debuginfo(build-id) = 5b07568628dde20bdb0fd9a2626e39f8bfbbeed4 debuginfo(build-id) = 682091f9a40b39725e00e1baf3793abcb3706187 debuginfo(build-id) = 6b7be98f8276cdea4108c99501804401f2735eef debuginfo(build-id) = 80b763e85eb3a05277085895268c046706fa70d0 debuginfo(build-id) = 8148b812e04bd5160f61e86e6ae963a8a25546e2 debuginfo(build-id) = 91c7e32640707ecbb17550767adf658ee07c10d3 debuginfo(build-id) = 99585fb1c14f7c770f57982c61c9fb4428455af0 debuginfo(build-id) = 9dd629ca7615dcd957172b47faa772237f43133c debuginfo(build-id) = a2f1e3c27538614cbdf69582e638c8c846ed3e6c debuginfo(build-id) = a83a9f61b2afe087ad8ad56756c6d2ac07c65c21 debuginfo(build-id) = af82bb0d37425ab36256601560e8154e8b49d878 debuginfo(build-id) = b5b4e373f814bd4b228c6bde6acc089807b1d1e0 debuginfo(build-id) = b8115e6aa7fb284fd97c9a3a55c923a58df83499 debuginfo(build-id) = c7893182139c829f27f016e073222079ee55148e debuginfo(build-id) = c903da6944cf181fa25079244d234f8854e64555 debuginfo(build-id) = c99bc2aecf1f05cff2142bbf4471bb73b53bbd6f debuginfo(build-id) = cec650df3874153b2c5535ccfc1b5105239966fd debuginfo(build-id) = dccd536cc396a8c3dd03db066b797fad2ab1d202 debuginfo(build-id) = e2833c376b376b7cbcad8c64a294533bb39c2e79 debuginfo(build-id) = f3c02a6286e501c8a8e96db8afaaa13ec2e0c3ee debuginfo(build-id) = feed775605e8ecdc0a719e6a984adc75f59fc92d debuginfo(build-id) = nilnil libR.so-4.4.1-5.fc42.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(aarch-64) = 4.4.1-5.fc42 Processing files: libRmath-debuginfo-4.4.1-5.fc42.aarch64 Provides: debuginfo(build-id) = d97ef447bd15fdf03815562835ecdf1ae48c1483 libRmath-debuginfo = 4.4.1-5.fc42 libRmath-debuginfo(aarch-64) = 4.4.1-5.fc42 libRmath.so-4.4.1-5.fc42.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(aarch-64) = 4.4.1-5.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-4.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/libRmath-static-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-core-devel-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/libRmath-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-debuginfo-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/libRmath-devel-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-devel-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-java-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-java-devel-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-debugsource-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-core-debuginfo-4.4.1-5.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-core-4.4.1-5.fc42.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Lq8s9Y + umask 022 + cd /builddir/build/BUILD/R-4.4.1-build + test -d /builddir/build/BUILD/R-4.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-4.4.1-build + rm -rf /builddir/build/BUILD/R-4.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: Duplicate build-ids /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/bin/Rscript and /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib64/R/bin/Rscript absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bib/R -> /usr/share/R/texmf/bibtex/bib absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bst/R -> /usr/share/R/texmf/bibtex/bst absolute symlink: /usr/share/texlive/texmf-dist/tex/latex/R -> /usr/share/R/texmf/tex/latex Duplicate build-ids /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib/debug/usr/bin/Rscript-4.4.1-5.fc42.aarch64.debug and /builddir/build/BUILD/R-4.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/R/bin/Rscript-4.4.1-5.fc42.aarch64.debug Finish: rpmbuild R-4.4.1-5.fc42.src.rpm Finish: build phase for R-4.4.1-5.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1727260745.348286/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-4.4.1-5.fc42.src.rpm) Config(child) 20 minutes 28 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-devel", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-core-debuginfo", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-java", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-debuginfo", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "libRmath-debuginfo", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-java-devel", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "libRmath-static", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-core", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "libRmath-devel", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-core-devel", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R-debugsource", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" }, { "name": "R", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "src" }, { "name": "libRmath", "epoch": null, "version": "4.4.1", "release": "5.fc42", "arch": "aarch64" } ] } RPMResults finished