Warning: Permanently added '54.162.105.143' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8068805-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.73 PID: 323346 Logging PID: 323347 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 8068805, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '40b8bb555dc3378f04f490dc0e6911bea0a5475e', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/R-Rsamtools', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rsamtools', 'package_version': '2.18.0-2', 'project_dirname': 'zlib-ng-rebase-fedora', 'project_name': 'zlib-ng-rebase-fedora', 'project_owner': 'ljavorsk', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ljavorsk/zlib-ng-rebase-fedora/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'ljavorsk/zlib-ng-rebase-fedora--ljavorsk', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'ljavorsk', 'tags': [], 'task_id': '8068805-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/R-Rsamtools /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/R-Rsamtools', '/var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools'... Running: git checkout 40b8bb555dc3378f04f490dc0e6911bea0a5475e -- cmd: ['git', 'checkout', '40b8bb555dc3378f04f490dc0e6911bea0a5475e', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools rc: 0 stdout: stderr: Note: switching to '40b8bb555dc3378f04f490dc0e6911bea0a5475e'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 40b8bb5 automatic import of R-Rsamtools Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rsamtools_2.18.0.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o Rsamtools_2.18.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ljavorsk/zlib-ng-rebase-fedora/R-Rsamtools/Rsamtools_2.18.0.tar.gz/md5/63af2a7dd2513e992fd78b26ca2b3775/Rsamtools_2.18.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2850k 100 2850k 0 0 113M 0 --:--:-- --:--:-- --:--:-- 115M INFO: Reading stdout from command: md5sum Rsamtools_2.18.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools/R-Rsamtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727260963.126787 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools/R-Rsamtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727260963.126787 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools/R-Rsamtools.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260963.126787/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260963.126787/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/1811ac4ffde70d7a142f548fca08095e5cad67d5b02ca184b763d6c52a090186/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/1811ac4ffde70d7a142f548fca08095e5cad67d5b02ca184b763d6c52a090186/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1727260963.126787/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.6.2-1.fc42.aarch64 dnf5-plugins-5.2.6.2-1.fc42.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 266.9 KiB/s | 13.3 KiB | 00m00s Copr repository 100% | 69.3 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 2.1 MiB/s | 82.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.32-2.fc42 fedora 8.3 MiB bzip2 aarch64 1.0.8-19.fc41 fedora 427.6 KiB coreutils aarch64 9.5-9.fc42 fedora 20.8 MiB cpio aarch64 2.15-2.fc41 fedora 1.2 MiB diffutils aarch64 3.10-8.fc41 fedora 2.1 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils aarch64 1:4.10.0-4.fc41 fedora 2.1 MiB gawk aarch64 5.3.0-4.fc41 fedora 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-1.fc42 fedora 0.0 B grep aarch64 3.11-9.fc41 fedora 1.1 MiB gzip aarch64 1.13-2.fc41 fedora 488.9 KiB info aarch64 7.1.1-1.fc42 fedora 613.6 KiB patch aarch64 2.7.6-25.fc41 fedora 390.6 KiB redhat-rpm-config noarch 295-1.fc42 fedora 186.6 KiB rpm-build aarch64 4.19.94-1.fc42 fedora 1.4 MiB sed aarch64 4.9-3.fc41 fedora 1.0 MiB shadow-utils aarch64 2:4.16.0-4.fc42 fedora 7.3 MiB tar aarch64 2:1.35-4.fc41 fedora 3.1 MiB unzip aarch64 6.0-64.fc41 fedora 726.7 KiB util-linux aarch64 2.40.2-8.fc42 fedora 16.9 MiB which aarch64 2.21-42.fc41 fedora 248.2 KiB xz aarch64 1:5.6.2-2.fc41 fedora 1.5 MiB Installing dependencies: add-determinism aarch64 0.3.6-1.fc41 fedora 2.0 MiB alternatives aarch64 1.30-1.fc41 fedora 218.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs aarch64 4.0.2-1.fc41 fedora 547.4 KiB authselect aarch64 1.5.0-7.fc41 fedora 309.5 KiB authselect-libs aarch64 1.5.0-7.fc41 fedora 931.9 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils aarch64 2.43.1-1.fc42 fedora 33.0 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B bzip2-libs aarch64 1.0.8-19.fc41 fedora 200.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.fc42 fedora 2.6 MiB coreutils-common aarch64 9.5-9.fc42 fedora 11.2 MiB cracklib aarch64 2.9.11-6.fc41 fedora 935.0 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 fedora 136.9 KiB curl aarch64 8.10.1-1.fc42 fedora 581.3 KiB cyrus-sasl-lib aarch64 2.1.28-27.fc41 fedora 3.1 MiB debugedit aarch64 5.0-17.fc41 fedora 499.2 KiB dwz aarch64 0.15-7.fc41 fedora 386.8 KiB ed aarch64 1.20.2-2.fc41 fedora 282.8 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils aarch64 0.191-8.fc41 fedora 4.9 MiB elfutils-debuginfod-client aarch64 0.191-8.fc41 fedora 396.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB elfutils-libelf aarch64 0.191-8.fc41 fedora 1.3 MiB elfutils-libs aarch64 0.191-8.fc41 fedora 938.3 KiB fedora-gpg-keys noarch 42-0.2 fedora 126.4 KiB fedora-release noarch 42-0.3 fedora 0.0 B fedora-release-identity-basic noarch 42-0.3 fedora 694.0 B fedora-repos noarch 42-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.2 fedora 2.2 KiB file aarch64 5.45-7.fc41 fedora 267.5 KiB file-libs aarch64 5.45-7.fc41 fedora 10.0 MiB filesystem aarch64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal aarch64 15.1-2.fc42 fedora 13.0 MiB gdbm aarch64 1:1.23-7.fc41 fedora 928.5 KiB gdbm-libs aarch64 1:1.23-7.fc41 fedora 426.0 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc aarch64 2.40.9000-1.fc42 fedora 9.2 MiB glibc-common aarch64 2.40.9000-1.fc42 fedora 2.6 MiB glibc-gconv-extra aarch64 2.40.9000-1.fc42 fedora 49.2 MiB gmp aarch64 1:6.3.0-2.fc41 fedora 722.0 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson aarch64 2.13.1-10.fc41 fedora 220.5 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-4.fc41 fedora 226.4 KiB krb5-libs aarch64 1.21.3-2.fc41 fedora 3.3 MiB libacl aarch64 2.3.2-2.fc41 fedora 196.1 KiB libarchive aarch64 3.7.4-3.fc42 fedora 974.6 KiB libattr aarch64 2.5.2-4.fc41 fedora 196.6 KiB libblkid aarch64 2.40.2-8.fc42 fedora 418.6 KiB libbrotli aarch64 1.1.0-5.fc41 fedora 1.1 MiB libcap aarch64 2.70-4.fc41 fedora 1.4 MiB libcap-ng aarch64 0.8.5-3.fc41 fedora 417.2 KiB libcom_err aarch64 1.47.1-3.fc41 fedora 239.3 KiB libcurl aarch64 8.10.1-1.fc42 fedora 858.4 KiB libeconf aarch64 0.6.2-3.fc41 fedora 206.1 KiB libevent aarch64 2.1.12-14.fc41 fedora 1.5 MiB libfdisk aarch64 2.40.2-8.fc42 fedora 482.9 KiB libffi aarch64 3.4.6-3.fc42 fedora 282.4 KiB libgcc aarch64 14.2.1-3.fc42 fedora 350.2 KiB libgomp aarch64 14.2.1-3.fc42 fedora 567.3 KiB libidn2 aarch64 2.3.7-2.fc41 fedora 457.2 KiB libmount aarch64 2.40.2-8.fc42 fedora 483.9 KiB libnghttp2 aarch64 1.63.0-1.fc42 fedora 262.2 KiB libnsl2 aarch64 2.0.1-2.fc41 fedora 222.0 KiB libpkgconf aarch64 2.3.0-1.fc42 fedora 198.1 KiB libpsl aarch64 0.21.5-4.fc41 fedora 196.6 KiB libpwquality aarch64 1.4.5-11.fc41 fedora 1.1 MiB libselinux aarch64 3.7-6.fc42 fedora 265.1 KiB libsemanage aarch64 3.7-3.fc42 fedora 361.6 KiB libsepol aarch64 3.7-3.fc42 fedora 873.9 KiB libsmartcols aarch64 2.40.2-8.fc42 fedora 288.5 KiB libssh aarch64 0.11.1-1.fc42 fedora 649.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ aarch64 14.2.1-3.fc42 fedora 2.8 MiB libtasn1 aarch64 4.19.0-9.fc41 fedora 283.8 KiB libtirpc aarch64 1.3.5-0.fc41 fedora 274.8 KiB libtool-ltdl aarch64 2.4.7-12.fc41 fedora 222.2 KiB libunistring aarch64 1.1-8.fc41 fedora 1.8 MiB libuuid aarch64 2.40.2-8.fc42 fedora 197.5 KiB libverto aarch64 0.3.2-9.fc41 fedora 197.5 KiB libxcrypt aarch64 4.4.36-7.fc41 fedora 399.0 KiB libxml2 aarch64 2.12.8-2.fc41 fedora 2.1 MiB libzstd aarch64 1.5.6-2.fc41 fedora 796.0 KiB lua-libs aarch64 5.4.6-6.fc41 fedora 393.1 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs aarch64 1.10.0-1.fc41 fedora 261.6 KiB mpfr aarch64 4.2.1-5.fc41 fedora 818.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 fedora 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap aarch64 2.6.8-5.fc41 fedora 952.3 KiB openssl-libs aarch64 1:3.2.2-8.fc42 fedora 7.2 MiB p11-kit aarch64 0.25.5-3.fc41 fedora 2.6 MiB p11-kit-trust aarch64 0.25.5-3.fc41 fedora 655.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam aarch64 1.6.1-6.fc42 fedora 11.0 MiB pam-libs aarch64 1.6.1-6.fc42 fedora 607.3 KiB pcre2 aarch64 10.44-1.fc41.1 fedora 905.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf aarch64 2.3.0-1.fc42 fedora 240.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 fedora 990.0 B popt aarch64 1.19-7.fc41 fedora 272.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B readline aarch64 8.2-11.fc42 fedora 753.3 KiB rpm aarch64 4.19.94-1.fc42 fedora 3.9 MiB rpm-build-libs aarch64 4.19.94-1.fc42 fedora 262.7 KiB rpm-libs aarch64 4.19.94-1.fc42 fedora 798.0 KiB rpm-sequoia aarch64 1.7.0-2.fc41 fedora 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs aarch64 3.46.0-4.fc41 fedora 1.6 MiB systemd-libs aarch64 256.5-1.fc42 fedora 2.5 MiB util-linux-core aarch64 2.40.2-8.fc42 fedora 6.2 MiB xxhash-libs aarch64 0.8.2-3.fc41 fedora 212.3 KiB xz-libs aarch64 1:5.6.2-2.fc41 fedora 266.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip aarch64 3.0-41.fc41 fedora 1.1 MiB zlib-ng-compat aarch64 2.2.2-1.fc42 copr_base 197.6 KiB zstd aarch64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation, 303 MiB extra will be used (install 303 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] redhat-rpm-config-0:295-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] rpm-build-0:4.19.94-1.fc42.aarch6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] unzip-0:6.0-64.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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Already downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/155] Verify package files 100% | 711.0 B/s | 153.0 B | 00m00s [ 2/155] Prepare transaction 100% | 2.4 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-3. 100% | 171.8 MiB/s | 351.9 KiB | 00m00s [ 4/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 6/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 33.6 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 44.3 MiB/s | 726.1 KiB | 00m00s [ 13/155] Installing filesystem-0:3.18- 100% | 2.2 MiB/s | 212.6 KiB | 00m00s [ 14/155] Installing 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warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 19/155] Installing glibc-0:2.40.9000- 100% | 250.4 MiB/s | 9.3 MiB | 00m00s [ 20/155] Installing bash-0:5.2.32-2.fc 100% | 307.9 MiB/s | 8.3 MiB | 00m00s [ 21/155] Installing glibc-common-0:2.4 100% | 285.6 MiB/s | 2.6 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 22/155] Installing glibc-gconv-extra- 100% | 547.3 MiB/s | 49.3 MiB | 00m00s [ 23/155] Installing zlib-ng-compat-0:2 100% | 96.9 MiB/s | 198.5 KiB | 00m00s [ 24/155] Installing bzip2-libs-0:1.0.8 100% | 197.1 MiB/s | 201.9 KiB | 00m00s [ 25/155] Installing 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libpwquality-0:1.4 100% | 158.2 MiB/s | 1.1 MiB | 00m00s [114/155] Installing libnsl2-0:2.0.1-2. 100% | 109.0 MiB/s | 223.2 KiB | 00m00s [115/155] Installing pam-0:1.6.1-6.fc42 100% | 367.9 MiB/s | 11.0 MiB | 00m00s [116/155] Installing libssh-0:0.11.1-1. 100% | 212.1 MiB/s | 651.7 KiB | 00m00s [117/155] Installing rpm-sequoia-0:1.7. 100% | 287.1 MiB/s | 2.3 MiB | 00m00s [118/155] Installing rpm-libs-0:4.19.94 100% | 260.3 MiB/s | 799.5 KiB | 00m00s [119/155] Installing rpm-build-libs-0:4 100% | 257.4 MiB/s | 263.6 KiB | 00m00s [120/155] Installing libevent-0:2.1.12- 100% | 380.8 MiB/s | 1.5 MiB | 00m00s [121/155] Installing openldap-0:2.6.8-5 100% | 233.4 MiB/s | 956.1 KiB | 00m00s [122/155] Installing libcurl-0:8.10.1-1 100% | 279.8 MiB/s | 859.5 KiB | 00m00s [123/155] Installing elfutils-debuginfo 100% | 194.8 MiB/s | 398.9 KiB | 00m00s [124/155] Installing binutils-0:2.43.1- 100% | 351.0 MiB/s | 33.0 MiB | 00m00s [125/155] Installing elfutils-0:0.191-8 100% | 353.9 MiB/s | 5.0 MiB | 00m00s [126/155] Installing gdb-minimal-0:15.1 100% | 332.8 MiB/s | 13.0 MiB | 00m00s [127/155] Installing debugedit-0:5.0-17 100% | 245.1 MiB/s | 502.0 KiB | 00m00s [128/155] Installing curl-0:8.10.1-1.fc 100% | 47.5 MiB/s | 583.8 KiB | 00m00s [129/155] Installing rpm-0:4.19.94-1.fc 100% | 146.0 MiB/s | 3.4 MiB | 00m00s [130/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [131/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [132/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 714.8 KiB/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 349.3 MiB/s | 1.4 MiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 368.6 MiB/s | 17.0 MiB | 00m00s [153/155] Installing authselect-0:1.5.0 100% | 102.2 MiB/s | 313.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [155/155] Installing info-0:7.1.1-1.fc4 100% | 270.5 KiB/s | 614.1 KiB | 00m02s Warning: skipped PGP checks for 1 package from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.aarch64 alternatives-1.30-1.fc41.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.aarch64 authselect-1.5.0-7.fc41.aarch64 authselect-libs-1.5.0-7.fc41.aarch64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.aarch64 binutils-2.43.1-1.fc42.aarch64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.aarch64 bzip2-libs-1.0.8-19.fc41.aarch64 ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch coreutils-9.5-9.fc42.aarch64 coreutils-common-9.5-9.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc41.aarch64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.10.1-1.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.0-17.fc41.aarch64 diffutils-3.10-8.fc41.aarch64 dwz-0.15-7.fc41.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.aarch64 elfutils-debuginfod-client-0.191-8.fc41.aarch64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.aarch64 elfutils-libs-0.191-8.fc41.aarch64 fedora-gpg-keys-42-0.2.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.2.noarch fedora-repos-rawhide-42-0.2.noarch file-5.45-7.fc41.aarch64 file-libs-5.45-7.fc41.aarch64 filesystem-3.18-29.fc42.aarch64 findutils-4.10.0-4.fc41.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.1-2.fc42.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-1.fc42.aarch64 glibc-common-2.40.9000-1.fc42.aarch64 glibc-gconv-extra-2.40.9000-1.fc42.aarch64 glibc-minimal-langpack-2.40.9000-1.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.aarch64 gzip-1.13-2.fc41.aarch64 info-7.1.1-1.fc42.aarch64 jansson-2.13.1-10.fc41.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.aarch64 krb5-libs-1.21.3-2.fc41.aarch64 libacl-2.3.2-2.fc41.aarch64 libarchive-3.7.4-3.fc42.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc41.aarch64 libcap-2.70-4.fc41.aarch64 libcap-ng-0.8.5-3.fc41.aarch64 libcom_err-1.47.1-3.fc41.aarch64 libcurl-8.10.1-1.fc42.aarch64 libeconf-0.6.2-3.fc41.aarch64 libevent-2.1.12-14.fc41.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-14.2.1-3.fc42.aarch64 libgomp-14.2.1-3.fc42.aarch64 libidn2-2.3.7-2.fc41.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.63.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc41.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc41.aarch64 libpwquality-1.4.5-11.fc41.aarch64 libselinux-3.7-6.fc42.aarch64 libsemanage-3.7-3.fc42.aarch64 libsepol-3.7-3.fc42.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-3.fc42.aarch64 libtasn1-4.19.0-9.fc41.aarch64 libtirpc-1.3.5-0.fc41.aarch64 libtool-ltdl-2.4.7-12.fc41.aarch64 libunistring-1.1-8.fc41.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.36-7.fc41.aarch64 libxml2-2.12.8-2.fc41.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.6-6.fc41.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.aarch64 mpfr-4.2.1-5.fc41.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.aarch64 openssl-libs-3.2.2-8.fc42.aarch64 p11-kit-0.25.5-3.fc41.aarch64 p11-kit-trust-0.25.5-3.fc41.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.aarch64 pam-libs-1.6.1-6.fc42.aarch64 patch-2.7.6-25.fc41.aarch64 pcre2-10.44-1.fc41.1.aarch64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc41.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.0-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-295-1.fc42.noarch rpm-4.19.94-1.fc42.aarch64 rpm-build-4.19.94-1.fc42.aarch64 rpm-build-libs-4.19.94-1.fc42.aarch64 rpm-libs-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-4.fc42.aarch64 sqlite-libs-3.46.0-4.fc41.aarch64 systemd-libs-256.5-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-64.fc41.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.2-3.fc41.aarch64 xz-5.6.2-2.fc41.aarch64 xz-libs-5.6.2-2.fc41.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.aarch64 zlib-ng-compat-2.2.2-1.fc42.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/R-Rsamtools-2.18.0-2.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-aarch64-1727260963.126787/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1727260963.126787/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-h44_5mhb/R-Rsamtools/R-Rsamtools.spec) Config(child) 0 minutes 17 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rsamtools-2.18.0-2.fc42.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260963.126787/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727260963.126787/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1727260963.126787/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.6.2-1.fc42.aarch64 dnf5-plugins-5.2.6.2-1.fc42.aarch64 Finish: chroot init Start: build phase for R-Rsamtools-2.18.0-2.fc42.src.rpm Start: build setup for R-Rsamtools-2.18.0-2.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/R-Rsamtools-2.18.0-2.fc42.src.rpm Updating and loading repositories: fedora 100% | 444.8 KiB/s | 13.3 KiB | 00m00s Copr repository 100% | 109.0 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 2.7 MiB/s | 89.7 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-BiocGenerics noarch 0.42.0-9.fc41 fedora 1.1 MiB R-BiocParallel aarch64 1.30.3-8.fc41 fedora 2.2 MiB R-Biostrings-devel aarch64 2.64.1-9.fc41 fedora 16.4 KiB R-GenomeInfoDb noarch 1.32.3-9.fc41 fedora 4.9 MiB R-GenomicRanges aarch64 1.48.0-9.fc41 fedora 3.7 MiB R-IRanges-devel aarch64 2.30.1-9.fc41 fedora 10.2 KiB R-Rhtslib-devel aarch64 2.4.1-2.fc42 copr_base 2.0 MiB R-S4Vectors-devel aarch64 0.40.2-2.fc41 fedora 32.5 KiB R-XVector-devel aarch64 0.42.0-2.fc41 fedora 17.3 KiB R-bitops aarch64 1.0.8-1.fc41 fedora 233.7 KiB R-core aarch64 4.4.1-5.fc41 fedora 105.4 MiB R-devel aarch64 4.4.1-5.fc41 fedora 0.0 B libcurl-devel aarch64 8.10.1-1.fc42 fedora 1.3 MiB texlive-collection-latexrecommended noarch 11:svn65512-73.fc41 fedora 0.0 B Installing dependencies: R-Biostrings aarch64 2.64.1-9.fc41 fedora 15.4 MiB R-GenomeInfoDbData noarch 1.2.8-9.fc41 fedora 11.0 MiB R-IRanges aarch64 2.30.1-9.fc41 fedora 3.9 MiB R-RCurl aarch64 1.98.1.8-8.fc41 fedora 2.2 MiB R-Rhtslib aarch64 2.4.1-2.fc42 copr_base 6.9 MiB R-S4Vectors aarch64 0.40.2-2.fc41 fedora 4.1 MiB R-XVector aarch64 0.42.0-2.fc41 fedora 1.2 MiB R-core-devel aarch64 4.4.1-5.fc41 fedora 394.7 KiB R-crayon noarch 1.5.1-8.fc41 fedora 235.6 KiB R-formatR noarch 1.13-9.fc41 fedora 248.9 KiB R-futile.logger noarch 1.4.3-24.fc41 fedora 151.3 KiB R-futile.options noarch 1.0.1-17.fc41 fedora 30.9 KiB R-java aarch64 4.4.1-5.fc41 fedora 0.0 B R-java-devel aarch64 4.4.1-5.fc41 fedora 0.0 B R-lambda.r noarch 1.2.4-17.fc41 fedora 148.1 KiB R-rpm-macros noarch 1.2.1-11.fc41 fedora 5.6 KiB R-snow noarch 0.4.4-17.fc41 fedora 140.2 KiB abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB adobe-mappings-cmap noarch 20230622-4.fc41 fedora 14.4 MiB adobe-mappings-cmap-deprecated noarch 20230622-4.fc41 fedora 582.1 KiB adobe-mappings-pdf noarch 20190401-8.fc41 fedora 4.4 MiB alsa-lib aarch64 1.2.12-2.fc41 fedora 1.8 MiB annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc aarch64 12.70-1.fc42 fedora 1.1 MiB avahi-libs aarch64 0.8-30.fc42 fedora 614.5 KiB biber noarch 2.19-6.fc41 fedora 1.3 MiB brotli aarch64 1.1.0-5.fc41 fedora 195.8 KiB brotli-devel aarch64 1.1.0-5.fc41 fedora 65.6 KiB bzip2-devel aarch64 1.0.8-19.fc41 fedora 309.8 KiB cairo aarch64 1.18.0-4.fc41 fedora 1.9 MiB cairo-devel aarch64 1.18.0-4.fc41 fedora 2.3 MiB cmake-filesystem aarch64 3.28.3-7.fc41 fedora 0.0 B copy-jdk-configs noarch 4.1-6.fc41 fedora 20.3 KiB cpp aarch64 14.2.1-3.fc42 fedora 31.8 MiB cups-libs aarch64 1:2.4.10-6.fc42 fedora 859.1 KiB dbus-libs aarch64 1:1.14.10-4.fc41 fedora 489.1 KiB default-fonts-core-sans noarch 4.1-3.fc42 fedora 11.9 KiB desktop-file-utils aarch64 0.27-2.fc41 fedora 638.4 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat aarch64 2.6.3-1.fc42 fedora 539.6 KiB flexiblas aarch64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-devel aarch64 3.4.4-3.fc41 fedora 5.1 MiB flexiblas-netlib aarch64 3.4.4-3.fc41 fedora 9.8 MiB 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11:svn15878.1.05.4-73.fc41 fedora 111.6 KiB texlive-memoir noarch 11:svn65040-73.fc41 fedora 480.4 KiB texlive-metafont aarch64 11:svn66186-85.fc41 fedora 941.8 KiB texlive-metalogo noarch 11:svn18611.0.12-73.fc41 fedora 15.7 KiB texlive-mflogo noarch 11:svn42428-73.fc41 fedora 12.0 KiB texlive-mfnfss noarch 11:svn46036-73.fc41 fedora 22.8 KiB texlive-mfware aarch64 11:svn66186-85.fc41 fedora 1.2 MiB texlive-microtype noarch 11:svn66587-73.fc41 fedora 459.9 KiB texlive-minitoc noarch 11:svn61719-73.fc41 fedora 534.1 KiB texlive-mnsymbol noarch 11:svn18651.1.4-73.fc41 fedora 5.7 MiB texlive-modes noarch 11:svn61719-73.fc41 fedora 389.9 KiB texlive-mparhack noarch 11:svn59066-73.fc41 fedora 20.3 KiB texlive-mptopdf noarch 11:svn65952-85.fc41 fedora 151.3 KiB texlive-ms noarch 11:svn57473-73.fc41 fedora 18.4 KiB texlive-multido noarch 11:svn18302.1.42-73.fc41 fedora 18.5 KiB texlive-natbib noarch 11:svn20668.8.31b-73.fc41 fedora 132.7 KiB texlive-newfloat noarch 11:svn52906-73.fc41 fedora 158.1 KiB texlive-notoccite noarch 11:svn18129.0-73.fc41 fedora 2.3 KiB texlive-ntgclass noarch 11:svn65522-73.fc41 fedora 282.6 KiB texlive-oberdiek noarch 11:svn65521-85.fc41 fedora 12.3 MiB texlive-pagesel noarch 11:svn56105-73.fc41 fedora 354.7 KiB texlive-palatino noarch 11:svn61719-73.fc41 fedora 1.1 MiB texlive-paralist noarch 11:svn43021-73.fc41 fedora 23.4 KiB texlive-parallel noarch 11:svn15878.0-73.fc41 fedora 22.5 KiB texlive-parskip noarch 11:svn58358-73.fc41 fedora 15.7 KiB texlive-pdfcol noarch 11:svn64469-73.fc41 fedora 345.6 KiB texlive-pdfcolfoot noarch 11:svn65512-73.fc41 fedora 335.8 KiB texlive-pdfcolmk noarch 11:svn52912-73.fc41 fedora 19.6 KiB texlive-pdfescape noarch 11:svn53082-73.fc41 fedora 375.9 KiB texlive-pdflscape noarch 11:svn64851-73.fc41 fedora 343.3 KiB texlive-pdfmanagement-testphase noarch 11:svn66532-73.fc41 fedora 11.6 MiB texlive-pdfpages noarch 11:svn65319-73.fc41 fedora 105.7 KiB texlive-pdftex aarch64 11:svn66243-85.fc41 fedora 4.7 MiB 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11:svn15878.0-73.fc41 fedora 27.0 KiB texlive-section noarch 11:svn20180.0-73.fc41 fedora 38.2 KiB texlive-seminar noarch 11:svn59801-73.fc41 fedora 195.9 KiB texlive-sepnum noarch 11:svn20186.2.0-73.fc41 fedora 15.0 KiB texlive-setspace noarch 11:svn65206-73.fc41 fedora 22.0 KiB texlive-showexpl noarch 11:svn57414-73.fc41 fedora 21.8 KiB texlive-stringenc noarch 11:svn52982-73.fc41 fedora 1.0 MiB texlive-subfig noarch 11:svn15878.1.3-73.fc41 fedora 36.6 KiB texlive-symbol noarch 11:svn61719-73.fc41 fedora 78.3 KiB texlive-tex aarch64 11:svn66186-85.fc41 fedora 525.4 KiB texlive-tex-ini-files noarch 11:svn40533-73.fc41 fedora 8.1 KiB texlive-texlive-common-doc noarch 11:svn54176-73.fc41 fedora 265.5 KiB texlive-texlive-en noarch 11:svn66572-85.fc41 fedora 5.9 MiB texlive-texlive-msg-translations noarch 11:svn66593-73.fc41 fedora 1.4 MiB texlive-texlive-scripts noarch 11:svn66584-85.fc41 fedora 337.2 KiB texlive-texlive.infra noarch 11:svn66512-85.fc41 fedora 1.0 MiB texlive-textcase noarch 11:svn63868-73.fc41 fedora 11.2 KiB texlive-thumbpdf noarch 11:svn62518-85.fc41 fedora 97.0 KiB texlive-times noarch 11:svn61719-73.fc41 fedora 992.2 KiB texlive-tipa noarch 11:svn29349.1.3-73.fc41 fedora 3.7 MiB texlive-titlesec noarch 11:svn59845-73.fc41 fedora 97.8 KiB texlive-tools noarch 11:svn64892-73.fc41 fedora 403.2 KiB texlive-translator noarch 11:svn59412-73.fc41 fedora 494.7 KiB texlive-transparent noarch 11:svn64852-73.fc41 fedora 302.0 KiB texlive-typehtml noarch 11:svn17134.0-73.fc41 fedora 33.4 KiB texlive-ucharcat noarch 11:svn38907-73.fc41 fedora 10.2 KiB texlive-ucs noarch 11:svn64114-73.fc41 fedora 2.4 MiB texlive-underscore noarch 11:svn18261.0-73.fc41 fedora 19.3 KiB texlive-unicode-data noarch 11:svn64423-73.fc41 fedora 3.1 MiB texlive-unicode-math noarch 11:svn61719-73.fc41 fedora 517.2 KiB texlive-uniquecounter noarch 11:svn53162-73.fc41 fedora 312.0 KiB texlive-url noarch 11:svn32528.3.4-73.fc41 fedora 21.4 KiB texlive-utopia noarch 11:svn15878.0-73.fc41 fedora 540.6 KiB texlive-varwidth noarch 11:svn24104.0.92-73.fc41 fedora 19.5 KiB texlive-xcolor noarch 11:svn63563-73.fc41 fedora 79.3 KiB texlive-xdvi aarch64 11:svn62387-85.fc41 fedora 826.6 KiB texlive-xetex aarch64 11:svn66203-85.fc41 fedora 2.3 MiB texlive-xetexconfig noarch 11:svn45845-73.fc41 fedora 305.0 B texlive-xifthen noarch 11:svn38929-73.fc41 fedora 14.4 KiB texlive-xkeyval noarch 11:svn63616-73.fc41 fedora 69.3 KiB texlive-xltxtra noarch 11:svn56594-73.fc41 fedora 14.4 KiB texlive-xpatch noarch 11:svn54563-73.fc41 fedora 26.8 KiB texlive-xstring noarch 11:svn65551-73.fc41 fedora 56.1 KiB texlive-xunicode noarch 11:svn30466.0.981-73.fc41 fedora 219.6 KiB texlive-zapfding noarch 11:svn61719-73.fc41 fedora 79.5 KiB texlive-zref noarch 11:svn62977-73.fc41 fedora 816.8 KiB tk aarch64 1:8.6.14-2.fc41 fedora 3.9 MiB tk-devel aarch64 1:8.6.14-2.fc41 fedora 985.6 KiB tre aarch64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 196.0 KiB tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB tre-devel aarch64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB ttmkfdir aarch64 3.0.9-71.fc41 fedora 222.4 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB tzdata-java noarch 2024a-9.fc41 fedora 101.7 KiB urw-base35-bookman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-c059-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-23.fc41 fedora 84.3 KiB urw-base35-fonts noarch 20200910-23.fc41 fedora 5.3 KiB urw-base35-fonts-common noarch 20200910-23.fc41 fedora 37.4 KiB urw-base35-gothic-fonts noarch 20200910-23.fc41 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-23.fc41 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-23.fc41 fedora 2.4 MiB urw-base35-p052-fonts noarch 20200910-23.fc41 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41 fedora 64.9 KiB urw-base35-z003-fonts noarch 20200910-23.fc41 fedora 390.8 KiB xdg-utils noarch 1.2.1-2.fc41 fedora 346.3 KiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xpdf-libs aarch64 1:4.05-5.fc41 fedora 2.2 MiB xz-devel aarch64 1:5.6.2-2.fc41 fedora 255.6 KiB zlib-ng-compat-devel aarch64 2.2.2-1.fc42 copr_base 106.8 KiB zziplib aarch64 0.13.74-2.fc41 fedora 922.0 KiB Transaction Summary: Installing: 716 packages Total size of inbound packages is 545 MiB. Need to download 401 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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texlive-rerunfilecheck-11:svn 100% | 36.8 MiB/s | 338.7 KiB | 00m00s [423/716] texlive-stringenc-11:svn52982 100% | 68.4 MiB/s | 699.9 KiB | 00m00s [424/716] texlive-uniquecounter-11:svn5 100% | 26.5 MiB/s | 298.4 KiB | 00m00s [425/716] texlive-url-11:svn32528.3.4-7 100% | 4.3 MiB/s | 17.7 KiB | 00m00s [426/716] texlive-etex-pkg-11:svn41784- 100% | 3.6 MiB/s | 14.8 KiB | 00m00s [427/716] texlive-transparent-11:svn648 100% | 30.8 MiB/s | 283.7 KiB | 00m00s [428/716] texlive-pstricks-11:svn65346- 100% | 16.0 MiB/s | 114.6 KiB | 00m00s [429/716] texlive-latex-11:svn65161-85. 100% | 218.2 MiB/s | 29.9 MiB | 00m00s [430/716] texlive-kastrup-11:svn15878.0 100% | 382.9 KiB/s | 10.7 KiB | 00m00s [431/716] texlive-currfile-11:svn64673- 100% | 635.6 KiB/s | 19.1 KiB | 00m00s [432/716] texlive-rsfs-11:svn15878.0-73 100% | 16.4 MiB/s | 67.4 KiB | 00m00s [433/716] texlive-luaotfload-11:svn6461 100% | 171.6 MiB/s | 1.2 MiB | 00m00s [434/716] texlive-footmisc-11:svn62524- 100% | 4.4 MiB/s | 22.8 KiB 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| 14.2 KiB | 00m00s [448/716] texlive-makecmds-11:svn15878. 100% | 6.6 MiB/s | 13.4 KiB | 00m00s [449/716] texlive-pst-ovl-11:svn54963-7 100% | 7.1 MiB/s | 14.6 KiB | 00m00s [450/716] ghostscript-0:10.03.1-3.fc41. 100% | 18.2 MiB/s | 37.2 KiB | 00m00s [451/716] texlive-catchfile-11:svn53084 100% | 74.5 MiB/s | 305.2 KiB | 00m00s [452/716] texlive-lualatex-math-11:svn6 100% | 9.0 MiB/s | 18.5 KiB | 00m00s [453/716] texlive-lm-math-11:svn36915.1 100% | 87.1 MiB/s | 445.9 KiB | 00m00s [454/716] texlive-pdfcolmk-11:svn52912- 100% | 8.1 MiB/s | 16.6 KiB | 00m00s [455/716] texlive-realscripts-11:svn565 100% | 5.5 MiB/s | 16.9 KiB | 00m00s [456/716] texlive-tipa-11:svn29349.1.3- 100% | 234.2 MiB/s | 2.8 MiB | 00m00s [457/716] flexiblas-netlib64-0:3.4.4-3. 100% | 181.0 MiB/s | 2.7 MiB | 00m00s [458/716] R-formatR-0:1.13-9.fc41.noarc 100% | 7.8 MiB/s | 167.6 KiB | 00m00s [459/716] java-21-openjdk-1:21.0.4.0.7- 100% | 41.2 MiB/s | 422.3 KiB | 00m00s [460/716] texlive-lib-11:20230311-85.fc 100% | 59.6 MiB/s | 488.1 KiB | 00m00s [461/716] texlive-texlive-scripts-11:sv 100% | 23.6 MiB/s | 121.0 KiB | 00m00s [462/716] texlive-hobsub-11:svn52810-73 100% | 14.8 MiB/s | 75.6 KiB | 00m00s [463/716] texlive-zapfding-11:svn61719- 100% | 30.4 MiB/s | 62.3 KiB | 00m00s [464/716] texlive-csquotes-11:svn64389- 100% | 11.0 MiB/s | 33.7 KiB | 00m00s [465/716] texlive-alphalph-11:svn53087- 100% | 50.1 MiB/s | 358.8 KiB | 00m00s [466/716] texlive-enumitem-11:svn51423- 100% | 6.3 MiB/s | 25.6 KiB | 00m00s [467/716] texlive-hypdoc-11:svn65678-73 100% | 46.5 MiB/s | 333.1 KiB | 00m00s [468/716] texlive-bibtex-11:svn66186-85 100% | 62.0 MiB/s | 444.4 KiB | 00m00s [469/716] texlive-cm-11:svn57963-73.fc4 100% | 52.0 MiB/s | 319.7 KiB | 00m00s [470/716] texlive-colorprofiles-11:svn4 100% | 28.1 MiB/s | 144.0 KiB | 00m00s [471/716] texlive-dvips-11:svn66203-85. 100% | 89.2 MiB/s | 730.5 KiB | 00m00s [472/716] texlive-dvipdfmx-11:svn66203- 100% | 149.2 MiB/s | 3.0 MiB | 00m00s [473/716] texlive-ec-11:svn25033.1.0-73 100% | 39.1 MiB/s | 679.9 KiB | 00m00s [474/716] texlive-enctex-11:svn34957.0- 100% | 6.3 MiB/s | 51.3 KiB | 00m00s [475/716] texlive-etex-11:svn66203-73.f 100% | 3.7 MiB/s | 26.5 KiB | 00m00s [476/716] texlive-glyphlist-11:svn54074 100% | 6.2 MiB/s | 37.9 KiB | 00m00s [477/716] texlive-graphics-def-11:svn64 100% | 6.5 MiB/s | 26.4 KiB | 00m00s [478/716] texlive-hyph-utf8-11:svn61719 100% | 6.7 MiB/s | 27.4 KiB | 00m00s [479/716] texlive-hyphen-base-11:svn664 100% | 7.8 MiB/s | 31.8 KiB | 00m00s [480/716] texlive-hyphenex-11:svn57387- 100% | 2.8 MiB/s | 17.4 KiB | 00m00s [481/716] texlive-ifplatform-11:svn4553 100% | 3.5 MiB/s | 14.2 KiB | 00m00s [482/716] texlive-knuth-lib-11:svn57963 100% | 12.2 MiB/s | 49.8 KiB | 00m00s [483/716] texlive-knuth-local-11:svn579 100% | 10.5 MiB/s | 42.8 KiB | 00m00s [484/716] texlive-lua-alt-getopt-11:svn 100% | 5.2 MiB/s | 10.7 KiB | 00m00s [485/716] texlive-makeindex-11:svn62517 100% | 60.0 MiB/s | 430.3 KiB | 00m00s 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294.6 KiB | 00m00s [499/716] texlive-unicode-data-11:svn64 100% | 59.1 MiB/s | 362.9 KiB | 00m00s [500/716] texlive-epstopdf-11:svn66461- 100% | 7.3 MiB/s | 29.7 KiB | 00m00s [501/716] texlive-xdvi-11:svn62387-85.f 100% | 41.4 MiB/s | 338.9 KiB | 00m00s [502/716] texlive-beton-11:svn15878.0-7 100% | 3.4 MiB/s | 13.9 KiB | 00m00s [503/716] texlive-minitoc-11:svn61719-7 100% | 10.6 MiB/s | 119.3 KiB | 00m00s [504/716] texlive-parallel-11:svn15878. 100% | 3.1 MiB/s | 15.9 KiB | 00m00s [505/716] texlive-pdfcol-11:svn64469-73 100% | 35.2 MiB/s | 324.7 KiB | 00m00s [506/716] texlive-sauerj-11:svn15878.0- 100% | 2.9 MiB/s | 17.9 KiB | 00m00s [507/716] texlive-zref-11:svn62977-73.f 100% | 83.7 MiB/s | 685.6 KiB | 00m00s [508/716] java-21-openjdk-headless-1:21 100% | 173.8 MiB/s | 47.1 MiB | 00m00s [509/716] texlive-avantgar-11:svn61983- 100% | 6.4 MiB/s | 319.1 KiB | 00m00s [510/716] texlive-bookman-11:svn61719-7 100% | 22.3 MiB/s | 365.0 KiB | 00m00s [511/716] texlive-charter-11:svn15878.0 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texlive-multido-11:svn18302.1 100% | 3.9 MiB/s | 16.0 KiB | 00m00s [525/716] texlive-paralist-11:svn43021- 100% | 3.8 MiB/s | 15.7 KiB | 00m00s [526/716] texlive-pst-3d-11:svn17257.1. 100% | 5.2 MiB/s | 16.1 KiB | 00m00s [527/716] texlive-pst-coil-11:svn62977- 100% | 5.4 MiB/s | 16.5 KiB | 00m00s [528/716] texlive-pst-eps-11:svn15878.1 100% | 7.5 MiB/s | 15.3 KiB | 00m00s [529/716] texlive-pst-fill-11:svn60671- 100% | 7.9 MiB/s | 16.2 KiB | 00m00s [530/716] texlive-pst-grad-11:svn15878. 100% | 8.0 MiB/s | 16.4 KiB | 00m00s [531/716] texlive-pst-node-11:svn61838- 100% | 9.3 MiB/s | 38.3 KiB | 00m00s [532/716] texlive-pst-plot-11:svn65346- 100% | 11.5 MiB/s | 35.2 KiB | 00m00s [533/716] texlive-pst-text-11:svn49542- 100% | 8.3 MiB/s | 16.9 KiB | 00m00s [534/716] texlive-pst-tools-11:svn60621 100% | 9.3 MiB/s | 19.0 KiB | 00m00s [535/716] texlive-pst-tree-11:svn60421- 100% | 6.2 MiB/s | 19.1 KiB | 00m00s [536/716] texlive-pstricks-add-11:svn65 100% | 8.5 MiB/s | 34.8 KiB | 00m00s [537/716] texlive-showexpl-11:svn57414- 100% | 4.0 MiB/s | 16.2 KiB | 00m00s [538/716] texlive-lua-uni-algos-11:svn6 100% | 23.1 MiB/s | 94.7 KiB | 00m00s [539/716] texlive-lualibs-11:svn64615-7 100% | 30.7 MiB/s | 157.3 KiB | 00m00s [540/716] zziplib-0:0.13.74-2.fc41.aarc 100% | 14.4 MiB/s | 88.4 KiB | 00m00s [541/716] texlive-changepage-11:svn1587 100% | 3.5 MiB/s | 17.8 KiB | 00m00s [542/716] texlive-placeins-11:svn19848. 100% | 2.8 MiB/s | 11.5 KiB | 00m00s [543/716] texlive-titlesec-11:svn59845- 100% | 7.8 MiB/s | 32.1 KiB | 00m00s [544/716] texlive-xifthen-11:svn38929-7 100% | 4.7 MiB/s | 14.4 KiB | 00m00s [545/716] texlive-ctablestack-11:svn385 100% | 4.0 MiB/s | 16.2 KiB | 00m00s [546/716] ghostscript-tools-fonts-0:10. 100% | 6.2 MiB/s | 12.7 KiB | 00m00s [547/716] ghostscript-tools-printing-0: 100% | 6.5 MiB/s | 13.4 KiB | 00m00s [548/716] flexiblas-openblas-openmp64-0 100% | 8.1 MiB/s | 16.5 KiB | 00m00s [549/716] alsa-lib-0:1.2.12-2.fc41.aarc 100% | 164.1 MiB/s | 504.1 KiB | 00m00s [550/716] copy-jdk-configs-0:4.1-6.fc41 100% | 9.0 MiB/s | 27.7 KiB | 00m00s [551/716] javapackages-filesystem-0:6.2 100% | 3.9 MiB/s | 12.1 KiB | 00m00s [552/716] lksctp-tools-0:1.0.19-9.fc41. 100% | 19.3 MiB/s | 98.8 KiB | 00m00s [553/716] tzdata-java-0:2024a-9.fc41.no 100% | 7.7 MiB/s | 47.4 KiB | 00m00s [554/716] texlive-gsftopk-11:svn52851-8 100% | 8.4 MiB/s | 34.4 KiB | 00m00s [555/716] xorg-x11-fonts-Type1-0:7.5-39 100% | 49.5 MiB/s | 507.0 KiB | 00m00s [556/716] texlive-cm-super-11:svn15878. 100% | 224.4 MiB/s | 61.7 MiB | 00m00s [557/716] texlive-dehyph-11:svn48599-73 100% | 1.1 MiB/s | 63.7 KiB | 00m00s [558/716] texlive-xetex-11:svn66203-85. 100% | 19.5 MiB/s | 1.2 MiB | 00m00s [559/716] perl-Text-Unidecode-0:1.30-25 100% | 35.4 MiB/s | 181.3 KiB | 00m00s [560/716] perl-XML-XPath-0:1.48-7.fc41. 100% | 21.2 MiB/s | 86.9 KiB | 00m00s [561/716] libXaw-0:1.0.16-2.fc41.aarch6 100% | 48.7 MiB/s | 199.3 KiB | 00m00s [562/716] texlive-notoccite-11:svn18129 100% | 5.3 MiB/s | 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perl-WWW-RobotRule 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [215/718] Installing perl-Business-ISBN 100% | 141.3 MiB/s | 289.5 KiB | 00m00s [216/718] Installing perl-Business-ISBN 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [217/718] Installing perl-Tie-Cycle-0:1 100% | 24.0 MiB/s | 24.6 KiB | 00m00s [218/718] Installing perl-Business-ISMN 100% | 36.8 MiB/s | 37.7 KiB | 00m00s [219/718] Installing perl-Class-Singlet 100% | 40.4 MiB/s | 41.4 KiB | 00m00s [220/718] Installing perl-File-Compare- 100% | 0.0 B/s | 6.1 KiB | 00m00s [221/718] Installing perl-ExtUtils-MM-U 100% | 0.0 B/s | 3.7 KiB | 00m00s [222/718] Installing perl-List-UtilsBy- 100% | 55.8 MiB/s | 57.2 KiB | 00m00s [223/718] Installing perl-List-AllUtils 100% | 132.7 MiB/s | 135.9 KiB | 00m00s [224/718] Installing perl-IPC-SysV-0:2. 100% | 119.6 MiB/s | 244.9 KiB | 00m00s [225/718] Installing perl-MIME-Charset- 100% | 104.8 MiB/s | 107.3 KiB | 00m00s [226/718] Installing perl-meta-notation 100% | 0.0 B/s | 2.3 KiB | 00m00s [227/718] Installing perl-sigtrap-0:1.1 100% | 0.0 B/s | 11.4 KiB | 00m00s [228/718] Installing perl-HTML-Tagset-0 100% | 0.0 B/s | 19.7 KiB | 00m00s [229/718] Installing perl-IO-HTML-0:1.0 100% | 45.7 MiB/s | 46.8 KiB | 00m00s [230/718] Installing perl-Filter-2:1.64 100% | 216.5 MiB/s | 886.9 KiB | 00m00s [231/718] Installing perl-encoding-4:3. 100% | 146.9 MiB/s | 150.4 KiB | 00m00s [232/718] Installing perl-open-0:1.13-5 100% | 0.0 B/s | 11.7 KiB | 00m00s [233/718] Installing perl-Number-Compar 100% | 0.0 B/s | 5.4 KiB | 00m00s [234/718] Installing perl-Text-Glob-0:0 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [235/718] Installing perl-File-Find-Rul 100% | 43.4 MiB/s | 44.4 KiB | 00m00s [236/718] Installing perl-Data-Compare- 100% | 56.8 MiB/s | 58.1 KiB | 00m00s [237/718] Installing perl-Math-Complex- 100% | 83.8 MiB/s | 85.8 KiB | 00m00s [238/718] Installing perl-Math-BigInt-1 100% | 234.8 MiB/s | 961.8 KiB | 00m00s [239/718] Installing perl-Data-Uniqid-0 100% | 5.7 MiB/s | 5.8 KiB | 00m00s 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107.4 MiB/s | 219.9 KiB | 00m00s [253/718] Installing perl-HTML-Parser-0 100% | 139.3 MiB/s | 427.9 KiB | 00m00s [254/718] Installing perl-HTTP-Negotiat 100% | 28.0 MiB/s | 28.7 KiB | 00m00s [255/718] Installing perl-Net-HTTP-0:6. 100% | 75.4 MiB/s | 77.2 KiB | 00m00s [256/718] Installing perl-HTTP-Cookies- 100% | 73.9 MiB/s | 75.7 KiB | 00m00s [257/718] Installing perl-libwww-perl-0 100% | 129.5 MiB/s | 530.3 KiB | 00m00s [258/718] Installing perl-XML-Parser-0: 100% | 152.3 MiB/s | 779.8 KiB | 00m00s [259/718] Installing perl-XML-XPath-0:1 100% | 68.4 MiB/s | 210.1 KiB | 00m00s [260/718] Installing texlive-epstopdf-1 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [261/718] Installing texlive-epstopdf-p 100% | 189.4 MiB/s | 388.0 KiB | 00m00s [262/718] Installing texlive-cm-11:svn5 100% | 125.9 MiB/s | 1.0 MiB | 00m00s [263/718] Installing texlive-etex-11:sv 100% | 41.7 MiB/s | 42.7 KiB | 00m00s [264/718] Installing texlive-hyph-utf8- 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [265/718] Installing texlive-hyphen-bas 100% | 64.3 MiB/s | 65.9 KiB | 00m00s [266/718] Installing texlive-knuth-lib- 100% | 51.9 MiB/s | 106.3 KiB | 00m00s [267/718] Installing texlive-plain-11:s 100% | 55.6 MiB/s | 113.8 KiB | 00m00s [268/718] Installing texlive-tex-ini-fi 100% | 9.9 MiB/s | 10.1 KiB | 00m00s [269/718] Installing texlive-unicode-da 100% | 383.8 MiB/s | 3.1 MiB | 00m00s [270/718] Installing texlive-graphics-d 100% | 97.5 MiB/s | 99.9 KiB | 00m00s [271/718] Installing texlive-texlive.in 100% | 201.4 MiB/s | 1.0 MiB | 00m00s [272/718] Installing texlive-gsftopk-11 100% | 203.7 MiB/s | 208.6 KiB | 00m00s [273/718] Installing texlive-luatex-11: 100% | 366.1 MiB/s | 9.2 MiB | 00m00s [274/718] Installing texlive-texlive-sc 100% | 85.2 MiB/s | 349.1 KiB | 00m00s [275/718] Installing texlive-kpathsea-1 100% | 346.1 MiB/s | 2.8 MiB | 00m00s [276/718] Installing texlive-iftex-11:s 100% | 29.6 MiB/s | 30.3 KiB | 00m00s [277/718] Installing texlive-amsmath-11 100% | 262.4 MiB/s | 268.7 KiB | 00m00s 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MiB/s | 377.2 KiB | 00m00s [291/718] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB | 00m00s [292/718] Installing texlive-etexcmds-1 100% | 157.4 MiB/s | 322.3 KiB | 00m00s [293/718] Installing texlive-latex-font 100% | 40.4 MiB/s | 124.2 KiB | 00m00s [294/718] Installing texlive-fp-11:svn4 100% | 124.9 MiB/s | 127.9 KiB | 00m00s [295/718] Installing texlive-hologo-11: 100% | 325.3 MiB/s | 666.1 KiB | 00m00s [296/718] Installing texlive-ragged2e-1 100% | 358.1 MiB/s | 733.3 KiB | 00m00s [297/718] Installing texlive-setspace-1 100% | 0.0 B/s | 22.4 KiB | 00m00s [298/718] Installing texlive-hycolor-11 100% | 403.5 MiB/s | 413.1 KiB | 00m00s [299/718] Installing texlive-bigintcalc 100% | 504.7 MiB/s | 516.8 KiB | 00m00s [300/718] Installing texlive-graphics-c 100% | 3.8 MiB/s | 3.9 KiB | 00m00s [301/718] Installing texlive-graphics-1 100% | 125.6 MiB/s | 128.7 KiB | 00m00s [302/718] Installing texlive-tools-11:s 100% | 134.0 MiB/s | 411.7 KiB | 00m00s [303/718] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [304/718] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [305/718] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [306/718] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [307/718] Installing texlive-intcalc-11 100% | 461.7 MiB/s | 472.8 KiB | 00m00s [308/718] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [309/718] Installing texlive-l3backend- 100% | 369.0 MiB/s | 1.1 MiB | 00m00s [310/718] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [311/718] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [312/718] Installing texlive-uniquecoun 100% | 61.2 MiB/s | 313.5 KiB | 00m00s [313/718] Installing texlive-lm-11:svn6 100% | 383.9 MiB/s | 39.5 MiB | 00m00s [314/718] Installing texlive-footmisc-1 100% | 64.1 MiB/s | 65.6 KiB | 00m00s [315/718] Installing texlive-hypdoc-11: 100% | 351.1 MiB/s | 359.5 KiB | 00m00s [316/718] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [317/718] Installing texlive-rerunfilec 100% | 354.8 MiB/s | 363.3 KiB | 00m00s [318/718] Installing texlive-subfig-11: 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [319/718] Installing texlive-carlisle-1 100% | 32.0 MiB/s | 32.8 KiB | 00m00s [320/718] Installing texlive-translator 100% | 126.9 MiB/s | 519.8 KiB | 00m00s [321/718] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB | 00m00s [322/718] Installing texlive-sauerj-11: 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [323/718] Installing texlive-bitset-11: 100% | 648.0 MiB/s | 663.5 KiB | 00m00s [324/718] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [325/718] Installing texlive-ifplatform 100% | 13.1 MiB/s | 13.5 KiB | 00m00s [326/718] Installing texlive-memoir-11: 100% | 236.2 MiB/s | 483.6 KiB | 00m00s [327/718] Installing texlive-babelbib-1 100% | 256.3 MiB/s | 787.2 KiB | 00m00s [328/718] Installing texlive-euenc-11:s 100% | 41.2 MiB/s | 42.2 KiB | 00m00s [329/718] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [330/718] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB | 00m00s [331/718] Installing texlive-fancybox-1 100% | 0.0 B/s | 41.5 KiB | 00m00s [332/718] Installing texlive-float-11:s 100% | 0.0 B/s | 16.2 KiB | 00m00s [333/718] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [334/718] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [335/718] Installing texlive-pdflscape- 100% | 336.7 MiB/s | 344.8 KiB | 00m00s [336/718] Installing texlive-ucharcat-1 100% | 0.0 B/s | 10.9 KiB | 00m00s [337/718] Installing texlive-underscore 100% | 0.0 B/s | 20.1 KiB | 00m00s [338/718] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [339/718] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [340/718] Installing texlive-firstaid-1 100% | 291.8 MiB/s | 298.8 KiB | 00m00s [341/718] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [342/718] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [343/718] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [344/718] Installing texlive-latexconfi 100% | 9.6 MiB/s | 9.8 KiB | 00m00s [345/718] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [346/718] Installing texlive-stringenc- 100% | 263.5 MiB/s | 1.1 MiB | 00m00s [347/718] Installing texlive-marvosym-1 100% | 91.9 MiB/s | 188.3 KiB | 00m00s [348/718] Installing texlive-zapfding-1 100% | 40.4 MiB/s | 82.7 KiB | 00m00s [349/718] Installing texlive-glyphlist- 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [350/718] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [351/718] Installing texlive-modes-11:s 100% | 382.8 MiB/s | 391.9 KiB | 00m00s [352/718] Installing texlive-zref-11:sv 100% | 267.6 MiB/s | 822.0 KiB | 00m00s [353/718] Installing texlive-palatino-1 100% | 124.5 MiB/s | 1.1 MiB | 00m00s [354/718] Installing texlive-paralist-1 100% | 23.6 MiB/s | 24.1 KiB | 00m00s [355/718] Installing texlive-placeins-1 100% | 0.0 B/s | 5.4 KiB | 00m00s [356/718] Installing texlive-auto-pst-p 100% | 15.2 MiB/s | 15.6 KiB | 00m00s [357/718] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [358/718] Installing texlive-fancyref-1 100% | 0.0 B/s | 28.6 KiB | 00m00s [359/718] Installing texlive-mathtools- 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [360/718] Installing texlive-ltabptch-1 100% | 0.0 B/s | 21.6 KiB | 00m00s [361/718] Installing texlive-crop-11:sv 100% | 26.8 MiB/s | 27.4 KiB | 00m00s [362/718] Installing texlive-microtype- 100% | 227.3 MiB/s | 465.6 KiB | 00m00s [363/718] Installing texlive-pdfmanagem 100% | 502.7 MiB/s | 11.6 MiB | 00m00s [364/718] Installing texlive-psfrag-11: 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [365/718] Installing texlive-logreq-11: 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [366/718] Installing texlive-dvips-11:s 100% | 228.0 MiB/s | 1.8 MiB | 00m00s [367/718] Installing texlive-hopatch-11 100% | 339.1 MiB/s | 347.2 KiB | 00m00s [368/718] Installing texlive-anysize-11 100% | 0.0 B/s | 4.1 KiB | 00m00s [369/718] Installing texlive-cite-11:sv 100% | 61.7 MiB/s | 63.2 KiB | 00m00s [370/718] Installing texlive-cmap-11:sv 100% | 37.9 MiB/s | 38.8 KiB | 00m00s [371/718] Installing texlive-everysel-1 100% | 448.6 MiB/s | 459.4 KiB | 00m00s [372/718] Installing texlive-footnotehy 100% | 0.0 B/s | 31.3 KiB | 00m00s [373/718] Installing texlive-latexbug-1 100% | 92.4 MiB/s | 283.8 KiB | 00m00s [374/718] Installing texlive-lwarp-11:s 100% | 213.8 MiB/s | 4.9 MiB | 00m00s [375/718] Installing texlive-mdwtools-1 100% | 111.5 MiB/s | 114.2 KiB | 00m00s [376/718] Installing texlive-newfloat-1 100% | 156.0 MiB/s | 159.7 KiB | 00m00s [377/718] Installing texlive-ntgclass-1 100% | 278.5 MiB/s | 285.2 KiB | 00m00s [378/718] Installing texlive-parskip-11 100% | 16.3 MiB/s | 16.7 KiB | 00m00s [379/718] Installing texlive-pdfcolfoot 100% | 329.2 MiB/s | 337.1 KiB | 00m00s [380/718] Installing texlive-rcs-11:svn 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [381/718] Installing texlive-sansmath-1 100% | 0.0 B/s | 9.3 KiB | 00m00s [382/718] Installing texlive-section-11 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [383/718] Installing texlive-sepnum-11: 100% | 0.0 B/s | 15.8 KiB | 00m00s [384/718] Installing texlive-textcase-1 100% | 11.7 MiB/s | 12.0 KiB | 00m00s [385/718] Installing texlive-babel-engl 100% | 45.4 MiB/s | 46.5 KiB | 00m00s [386/718] Installing texlive-fix2col-11 100% | 17.0 MiB/s | 17.4 KiB | 00m00s [387/718] Installing texlive-latex-lab- 100% | 462.2 MiB/s | 2.3 MiB | 00m00s [388/718] Installing texlive-mfnfss-11: 100% | 24.2 MiB/s | 24.7 KiB | 00m00s [389/718] Installing texlive-mptopdf-11 100% | 75.0 MiB/s | 153.5 KiB | 00m00s [390/718] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [391/718] Installing texlive-pslatex-11 100% | 28.5 MiB/s | 29.2 KiB | 00m00s [392/718] Installing texlive-pspicture- 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [393/718] Installing texlive-transparen 100% | 296.6 MiB/s | 303.7 KiB | 00m00s [394/718] Installing texlive-kastrup-11 100% | 0.0 B/s | 4.2 KiB | 00m00s [395/718] Installing texlive-rsfs-11:sv 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [396/718] Installing texlive-marginnote 100% | 0.0 B/s | 23.3 KiB | 00m00s [397/718] Installing texlive-mparhack-1 100% | 0.0 B/s | 21.1 KiB | 00m00s [398/718] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB | 00m00s [399/718] Installing texlive-finstrut-1 100% | 25.7 MiB/s | 26.4 KiB | 00m00s [400/718] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB | 00m00s [401/718] Installing texlive-luabidi-11 100% | 26.1 MiB/s | 26.8 KiB | 00m00s [402/718] Installing texlive-makecmds-1 100% | 0.0 B/s | 11.9 KiB | 00m00s [403/718] Installing texlive-lm-math-11 100% | 239.9 MiB/s | 736.9 KiB | 00m00s [404/718] Installing texlive-pdfcolmk-1 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [405/718] Installing texlive-xcolor-11: 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [406/718] Installing texlive-eso-pic-11 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [407/718] Installing texlive-ctable-11: 100% | 0.0 B/s | 21.4 KiB | 00m00s [408/718] Installing texlive-hobsub-11: 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [409/718] Installing texlive-hyperref-1 100% | 250.5 MiB/s | 769.4 KiB | 00m00s [410/718] Installing texlive-attachfile 100% | 241.6 MiB/s | 494.8 KiB | 00m00s [411/718] Installing texlive-attachfile 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [412/718] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB | 00m00s [413/718] Installing texlive-enumitem-1 100% | 58.7 MiB/s | 60.1 KiB | 00m00s [414/718] Installing texlive-bibtex-11: 100% | 304.3 MiB/s | 934.8 KiB | 00m00s [415/718] Installing texlive-colorprofi 100% | 66.9 MiB/s | 274.1 KiB | 00m00s [416/718] Installing texlive-ec-11:svn2 100% | 78.4 MiB/s | 2.7 MiB | 00m00s [417/718] Installing texlive-enctex-11: 100% | 91.5 MiB/s | 187.3 KiB | 00m00s 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texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [444/718] Installing texlive-luaotfload 100% | 456.6 MiB/s | 8.2 MiB | 00m00s [445/718] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [446/718] Installing texlive-notoccite- 100% | 2.9 MiB/s | 3.0 KiB | 00m00s [447/718] Installing texlive-fpl-11:svn 100% | 317.9 MiB/s | 651.2 KiB | 00m00s [448/718] Installing texlive-mathpazo-1 100% | 57.0 MiB/s | 116.7 KiB | 00m00s [449/718] Installing texlive-psnfss-11: 100% | 29.2 MiB/s | 119.5 KiB | 00m00s [450/718] Installing texlive-xstring-11 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [451/718] Installing texlive-pst-math-1 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [452/718] Installing texlive-varwidth-1 100% | 19.8 MiB/s | 20.3 KiB | 00m00s [453/718] Installing texlive-ifmtarg-11 100% | 0.0 B/s | 9.9 KiB | 00m00s [454/718] Installing texlive-xetexconfi 100% | 0.0 B/s | 776.0 B | 00m00s [455/718] Installing perl-LWP-Protocol- 100% | 30.4 MiB/s | 31.1 KiB | 00m00s [456/718] Installing perl-XML-SAX-0:1.0 100% | 2.2 MiB/s | 126.0 KiB | 00m00s [457/718] Installing perl-XML-LibXML-1: 100% | 9.8 MiB/s | 1.0 MiB | 00m00s [458/718] Installing perl-XML-LibXML-Si 100% | 51.1 MiB/s | 52.3 KiB | 00m00s [459/718] Installing perl-XML-LibXSLT-0 100% | 92.0 MiB/s | 282.6 KiB | 00m00s [460/718] Installing perl-Class-Inspect 100% | 57.9 MiB/s | 59.3 KiB | 00m00s [461/718] Installing perl-File-ShareDir 100% | 28.9 MiB/s | 59.2 KiB | 00m00s [462/718] Installing perl-Class-Data-In 100% | 0.0 B/s | 7.0 KiB | 00m00s [463/718] Installing perl-Exception-Cla 100% | 92.4 MiB/s | 94.6 KiB | 00m00s [464/718] Installing perl-Ref-Util-XS-0 100% | 102.0 MiB/s | 208.8 KiB | 00m00s [465/718] Installing perl-Ref-Util-0:0. 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [466/718] Installing perl-Class-Method- 100% | 53.5 MiB/s | 109.6 KiB | 00m00s [467/718] Installing perl-Role-Tiny-0:2 100% | 62.0 MiB/s | 63.5 KiB | 00m00s [468/718] Installing perl-Hash-Util-Fie 100% | 230.9 MiB/s | 236.4 KiB | 00m00s [469/718] Installing perl-Variable-Magi 100% | 139.0 MiB/s | 284.7 KiB | 00m00s [470/718] Installing perl-I18N-LangTags 100% | 81.6 MiB/s | 83.6 KiB | 00m00s [471/718] Installing perl-Locale-Makete 100% | 169.9 MiB/s | 173.9 KiB | 00m00s [472/718] Installing perl-Locale-Makete 100% | 13.1 MiB/s | 13.5 KiB | 00m00s [473/718] Installing perl-Params-Check- 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [474/718] Installing perl-Module-Load-C 100% | 29.2 MiB/s | 29.9 KiB | 00m00s [475/718] Installing perl-IPC-Cmd-2:1.0 100% | 83.9 MiB/s | 85.9 KiB | 00m00s [476/718] Installing perl-GSSAPI-0:0.28 100% | 119.3 MiB/s | 244.4 KiB | 00m00s [477/718] Installing perl-Tie-0:4.6-511 100% | 32.9 MiB/s | 33.7 KiB | 00m00s [478/718] Installing perl-Authen-SASL-0 100% | 59.5 MiB/s | 121.8 KiB | 00m00s [479/718] Installing perl-deprecate-0:0 100% | 0.0 B/s | 6.9 KiB | 00m00s [480/718] Installing perl-Text-Soundex- 100% | 113.8 MiB/s | 233.1 KiB | 00m00s [481/718] Installing perl-LDAP-1:0.68-1 100% | 117.5 MiB/s | 962.3 KiB | 00m00s [482/718] Installing perl-Email-Date-Fo 100% | 25.4 MiB/s | 26.0 KiB | 00m00s [483/718] Installing perl-MIME-Types-0: 100% | 180.0 MiB/s | 184.3 KiB | 00m00s [484/718] Installing perl-MIME-Lite-0:3 100% | 121.6 MiB/s | 248.9 KiB | 00m00s [485/718] Installing perl-Net-SMTP-SSL- 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [486/718] Installing perl-MailTools-0:2 100% | 69.2 MiB/s | 212.7 KiB | 00m00s [487/718] Installing perl-English-0:1.1 100% | 0.0 B/s | 6.6 KiB | 00m00s [488/718] Installing perltidy-0:2024090 100% | 299.1 MiB/s | 3.9 MiB | 00m00s [489/718] Installing perl-Package-Stash 100% | 110.9 MiB/s | 227.1 KiB | 00m00s [490/718] Installing perl-Package-Stash 100% | 56.8 MiB/s | 58.1 KiB | 00m00s [491/718] Installing perl-DynaLoader-Fu 100% | 20.3 MiB/s | 20.7 KiB | 00m00s [492/718] Installing perl-Devel-CallChe 100% | 214.1 MiB/s | 219.3 KiB | 00m00s [493/718] Installing perl-Params-Classi 100% | 220.3 MiB/s | 225.6 KiB | 00m00s [494/718] Installing perl-DateTime-Time 100% | 28.9 MiB/s | 29.6 KiB | 00m00s [495/718] Installing perl-DateTime-Time 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [496/718] Installing perl-PadWalker-0:2 100% | 209.7 MiB/s | 214.8 KiB | 00m00s [497/718] Installing perl-Devel-Caller- 100% | 204.3 MiB/s | 209.2 KiB | 00m00s [498/718] Installing perl-Devel-LexAlia 100% | 196.3 MiB/s | 201.1 KiB | 00m00s [499/718] Installing perl-Eval-Closure- 100% | 33.8 MiB/s | 34.6 KiB | 00m00s [500/718] Installing perl-Params-Valida 100% | 46.0 MiB/s | 94.2 KiB | 00m00s [501/718] Installing perl-Specio-0:0.48 100% | 84.2 MiB/s | 344.7 KiB | 00m00s [502/718] Installing perl-Package-Gener 100% | 30.8 MiB/s | 31.6 KiB | 00m00s [503/718] Installing perl-Sub-Exporter- 100% | 98.6 MiB/s | 201.9 KiB | 00m00s [504/718] Installing perl-Sub-Exporter- 100% | 28.2 MiB/s | 28.9 KiB | 00m00s [505/718] Installing perl-B-Hooks-EndOf 100% | 36.7 MiB/s | 75.1 KiB | 00m00s [506/718] Installing perl-namespace-cle 100% | 21.8 MiB/s | 44.6 KiB | 00m00s 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| 1.2 MiB | 00m00s [520/718] Installing default-fonts-core 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [521/718] Installing lua-posix-0:36.2.1 100% | 455.2 MiB/s | 5.5 MiB | 00m00s [522/718] Installing lua-0:5.4.6-6.fc41 100% | 285.4 MiB/s | 876.7 KiB | 00m00s [523/718] Installing copy-jdk-configs-0 100% | 6.8 MiB/s | 21.0 KiB | 00m00s [524/718] Installing kernel-headers-0:6 100% | 146.1 MiB/s | 6.4 MiB | 00m00s [525/718] Installing libxcrypt-devel-0: 100% | 10.6 MiB/s | 32.6 KiB | 00m00s [526/718] Installing glibc-devel-0:2.40 100% | 120.3 MiB/s | 2.3 MiB | 00m00s [527/718] Installing openjpeg-0:2.5.2-4 100% | 75.3 MiB/s | 539.7 KiB | 00m00s [528/718] Installing libijs-0:0.35-23.f 100% | 225.3 MiB/s | 230.7 KiB | 00m00s [529/718] Installing lcms2-0:2.16-4.fc4 100% | 237.6 MiB/s | 486.5 KiB | 00m00s [530/718] Installing jbig2dec-libs-0:0. 100% | 147.8 MiB/s | 302.7 KiB | 00m00s [531/718] Installing adobe-mappings-pdf 100% | 338.2 MiB/s | 4.4 MiB | 00m00s [532/718] Installing tzdata-java-0:2024 100% | 99.7 MiB/s | 102.1 KiB | 00m00s [533/718] Installing lksctp-tools-0:1.0 100% | 314.4 MiB/s | 1.3 MiB | 00m00s [534/718] Installing javapackages-files 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [535/718] Installing alsa-lib-0:1.2.12- 100% | 232.5 MiB/s | 1.9 MiB | 00m00s [536/718] Installing libubsan-0:14.2.1- 100% | 263.7 MiB/s | 540.1 KiB | 00m00s [537/718] Installing libatomic-0:14.2.1 100% | 193.1 MiB/s | 197.8 KiB | 00m00s [538/718] Installing libasan-0:14.2.1-3 100% | 267.1 MiB/s | 1.6 MiB | 00m00s [539/718] Installing gcc-0:14.2.1-3.fc4 100% | 332.6 MiB/s | 93.8 MiB | 00m00s [540/718] Installing gcc-gfortran-0:14. 100% | 292.4 MiB/s | 33.9 MiB | 00m00s [541/718] Installing texlive-texlive-co 100% | 130.8 MiB/s | 268.0 KiB | 00m00s [542/718] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [543/718] Installing libdatrie-0:0.2.13 100% | 217.9 MiB/s | 223.1 KiB | 00m00s [544/718] Installing libthai-0:0.1.29-9 100% | 305.1 MiB/s | 937.3 KiB | 00m00s 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201.7 MiB/s | 206.6 KiB | 00m00s [558/718] Installing ttmkfdir-0:3.0.9-7 100% | 109.1 MiB/s | 223.5 KiB | 00m00s [559/718] Installing desktop-file-utils 100% | 209.0 MiB/s | 642.1 KiB | 00m00s [560/718] Installing xdg-utils-0:1.2.1- 100% | 42.7 MiB/s | 349.5 KiB | 00m00s [561/718] Installing xml-common-0:0.6.3 100% | 26.4 MiB/s | 81.1 KiB | 00m00s [562/718] Installing fontconfig-0:2.15. 100% | 2.0 MiB/s | 2.4 MiB | 00m01s [563/718] Installing texlive-pdftex-11: 100% | 236.4 MiB/s | 4.7 MiB | 00m00s [564/718] Installing texlive-algorithms 100% | 38.2 MiB/s | 39.1 KiB | 00m00s [565/718] Installing texlive-xunicode-1 100% | 107.6 MiB/s | 220.3 KiB | 00m00s [566/718] Installing texlive-tipa-11:sv 100% | 237.0 MiB/s | 3.8 MiB | 00m00s [567/718] Installing texlive-cm-super-1 100% | 468.6 MiB/s | 65.1 MiB | 00m00s [568/718] Installing texlive-bera-11:sv 100% | 128.8 MiB/s | 791.2 KiB | 00m00s [569/718] Installing texlive-currfile-1 100% | 34.1 MiB/s | 35.0 KiB | 00m00s [570/718] Installing 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Finish: build setup for R-Rsamtools-2.18.0-2.fc42.src.rpm Start: rpmbuild R-Rsamtools-2.18.0-2.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721174400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.ki396Z + umask 022 + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + test -d /builddir/build/BUILD/R-Rsamtools-2.18.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Rsamtools-2.18.0-build + /usr/bin/rm -rf /builddir/build/BUILD/R-Rsamtools-2.18.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-Rsamtools-2.18.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-Rsamtools-2.18.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cfY77I + umask 022 + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + rm -rf Rsamtools + /usr/bin/mkdir -p Rsamtools + cd Rsamtools + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rsamtools_2.18.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd Rsamtools ~/build/BUILD/R-Rsamtools-2.18.0-build/Rsamtools/Rsamtools ~/build/BUILD/R-Rsamtools-2.18.0-build/Rsamtools Patch #0 (0001-format-security-fix.patch): + echo 'Patch #0 (0001-format-security-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/samtools_patch.c patching file src/zip_compression.c + popd ~/build/BUILD/R-Rsamtools-2.18.0-build/Rsamtools + sed -i 's|zlibbioc, ||g' Rsamtools/DESCRIPTION + sed -i '/import(zlibbioc)/d' Rsamtools/NAMESPACE + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Fa7oY6 + umask 022 + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rsamtools + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.PNxVWC + umask 022 + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + '[' /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-Rsamtools-2.18.0-build + mkdir /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rsamtools + mkdir -p /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT/usr/lib64/R/library Rsamtools * installing *source* package ‘Rsamtools’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c COMPAT_bcf_hdr_read.c -o COMPAT_bcf_hdr_read.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c IRanges_stubs.c -o IRanges_stubs.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c PileupBuffer.cpp -o PileupBuffer.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c PosCacheColl.cpp -o PosCacheColl.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Rsamtools.c -o R_init_Rsamtools.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ResultManager.cpp -o ResultManager.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c as_bam.c -o as_bam.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bam_data.c -o bam_data.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bam_mate_iter.cpp -o bam_mate_iter.o In file included from Template.h:9, from BamIterator.h:10, from BamRangeIterator.h:7, from bam_mate_iter.cpp:2: BamRangeIterator.h: In member function ‘virtual void BamRangeIterator::finalize_inprogress(bamFile)’: /usr/lib64/R/library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ~~~~~~~~~^~~~~~~~~~~~~~ BamRangeIterator.h:138:16: note: in expansion of macro ‘bam_seek’ 138 | (void) bam_seek(bfile, pos, SEEK_SET); | ^~~~~~~~ BamIterator.h: In constructor ‘BamIterator::BamIterator(bamFile, const bam_index_t*)’: /usr/lib64/R/library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ~~~~~~~~~^~~~~~~~~~~~~~ BamIterator.h:87:16: note: in expansion of macro ‘bam_seek’ 87 | (void) bam_seek(bfile, 0, 0); | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bam_plbuf.c -o bam_plbuf.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bam_sort.c -o bam_sort.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bambuffer.c -o bambuffer.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bamfile.c -o bamfile.o bamfile.c: In function ‘bamfile_isincomplete’: bamfile.c:168:20: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | (void) bgzf_seek(bfile->file->x.bam, offset, SEEK_SET); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘_bam_tryindexload’, inlined from ‘_bamfile_open_r’ at bamfile.c:89:24, inlined from ‘bamfile_open’ at bamfile.c:127:17: bamfile.c:29:17: warning: ‘cfile’ may be used uninitialized [-Wmaybe-uninitialized] 29 | index = hts_idx_load2(file, indexname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bamfile.c: In function ‘bamfile_open’: bamfile.c:73:17: note: ‘cfile’ was declared here 73 | const char *cfile; | ^~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bcffile.c -o bcffile.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bedidx.c -o bedidx.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c encode.c -o encode.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fafile.c -o fafile.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c idxstats.c -o idxstats.o In file included from bamfile.h:5, from idxstats.c:1: idxstats.c: In function ‘idxstats_bamfile’: /usr/lib64/R/library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ^~~~~~~~~~~~~~~~~~~~~~~ idxstats.c:20:12: note: in expansion of macro ‘bam_seek’ 20 | (void) bam_seek(fp, 0, 0); | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c io_sam.c -o io_sam.o In file included from io_sam.c:2: io_sam.c: In function ‘_scan_bam_all’: /usr/lib64/R/library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ^~~~~~~~~~~~~~~~~~~~~~~ io_sam.c:307:12: note: in expansion of macro ‘bam_seek’ 307 | (void) bam_seek(bfile->file->x.bam, bfile->pos0, SEEK_SET); | ^~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pbuffer_wrapper.cpp -o pbuffer_wrapper.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pileup.cpp -o pileup.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pileupbam.c -o pileupbam.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sam_opts.c -o sam_opts.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sam_utils.c -o sam_utils.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c samtools_patch.c -o samtools_patch.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c scan_bam_data.c -o scan_bam_data.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tabixfile.c -o tabixfile.o tabixfile.c: In function ‘index_tabix’: tabixfile.c:190:5: warning: ‘bgzf_is_bgzf’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 190 | if (bgzf_is_bgzf(fn) != 1) | ^~ In file included from tabixfile.c:3: /usr/lib64/R/library/Rhtslib/include/htslib/bgzf.h:270:9: note: declared here 270 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tagfilter.c -o tagfilter.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utilities.c -o utilities.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/Rhtslib/include' -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I'/usr/lib64/R/library/Biostrings/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c zip_compression.c -o zip_compression.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rsamtools.so Biostrings_stubs.o COMPAT_bcf_hdr_read.o IRanges_stubs.o PileupBuffer.o PosCacheColl.o R_init_Rsamtools.o ResultManager.o S4Vectors_stubs.o XVector_stubs.o as_bam.o bam_data.o bam_mate_iter.o bam_plbuf.o bam_sort.o bambuffer.o bamfile.o bcffile.o bedidx.o encode.o fafile.o idxstats.o io_sam.o pbuffer_wrapper.o pileup.o pileupbam.o sam_opts.o sam_utils.o samtools_patch.o scan_bam_data.o tabixfile.o tagfilter.o utilities.o zip_compression.o /usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT/usr/lib64/R/library/00LOCK-Rsamtools/00new/Rsamtools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rsamtools’ finding HTML links ... done ApplyPileupsParam-class html BamFile-class html finding level-2 HTML links ... done BamViews-class html BcfFile-class html FaFile-class html PileupFiles-class html Rsamtools-package html RsamtoolsFile-class html RsamtoolsFileList-class html ScanBamParam-class html ScanBcfParam-class html TabixFile-class html applyPileups html defunct html deprecated html headerTabix html indexTabix html pileup html quickBamFlagSummary html readPileup html scanBam html scanBcf html scanFa html scanTabix html seqnamesTabix html testPairedEndBam html zip html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rsamtools) + test -d Rsamtools/src + cd Rsamtools/src + rm -f Biostrings_stubs.o COMPAT_bcf_hdr_read.o IRanges_stubs.o PileupBuffer.o PosCacheColl.o R_init_Rsamtools.o ResultManager.o S4Vectors_stubs.o XVector_stubs.o as_bam.o bam_data.o bam_mate_iter.o bam_plbuf.o bam_sort.o bambuffer.o bamfile.o bcffile.o bedidx.o encode.o fafile.o idxstats.o io_sam.o pbuffer_wrapper.o pileup.o pileupbam.o sam_opts.o sam_utils.o samtools_patch.o scan_bam_data.o tabixfile.o tagfilter.o utilities.o zip_compression.o Rsamtools.so + rm -f /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.18.0-2.fc42 --unique-debug-suffix -2.18.0-2.fc42.aarch64 --unique-debug-src-base R-Rsamtools-2.18.0-2.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-Rsamtools-2.18.0-build/Rsamtools find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rsamtools-2.18.0-2.fc42.aarch64 488 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/R/library/Rsamtools/scripts/update-samtools.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT Scanned 30 directories and 531 files, processed 364 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-Rsamtools-2.18.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.DeNbsQ + umask 022 + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rsamtools + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rsamtools-2.18.0-2.fc42.aarch64 Provides: R(Rsamtools) = 2.18.0 R-Rsamtools = 2.18.0-2.fc42 R-Rsamtools(aarch-64) = 2.18.0-2.fc42 R-Rsamtools-devel = 2.18.0-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh R(ABI) = 4.4 R(BiocGenerics) >= 0.25.1 R(BiocParallel) R(Biostrings) >= 2.47.6 R(GenomeInfoDb) >= 1.1.3 R(GenomicRanges) >= 1.31.8 R(IRanges) >= 2.13.12 R(S4Vectors) >= 0.17.25 R(XVector) >= 0.19.7 R(bitops) R(methods) R(stats) R(utils) R-core >= 3.5.0 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcurl.so.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH) Obsoletes: R-Rsamtools-devel <= 1.34.1 Suggests: R(GenomicAlignments) R(RUnit) R(knitr) Processing files: R-Rsamtools-debugsource-2.18.0-2.fc42.aarch64 Provides: R-Rsamtools-debugsource = 2.18.0-2.fc42 R-Rsamtools-debugsource(aarch-64) = 2.18.0-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rsamtools-debuginfo-2.18.0-2.fc42.aarch64 Provides: R-Rsamtools-debuginfo = 2.18.0-2.fc42 R-Rsamtools-debuginfo(aarch-64) = 2.18.0-2.fc42 debuginfo(build-id) = 89102bcfdddc32ee7a1ef1ef09216d969eb6fdd6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rsamtools-debugsource(aarch-64) = 2.18.0-2.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-Rsamtools-2.18.0-build/BUILDROOT Wrote: /builddir/build/RPMS/R-Rsamtools-debugsource-2.18.0-2.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rsamtools-debuginfo-2.18.0-2.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rsamtools-2.18.0-2.fc42.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.yH2iHz + umask 022 + cd /builddir/build/BUILD/R-Rsamtools-2.18.0-build + test -d /builddir/build/BUILD/R-Rsamtools-2.18.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Rsamtools-2.18.0-build + rm -rf /builddir/build/BUILD/R-Rsamtools-2.18.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Rsamtools-2.18.0-2.fc42.src.rpm Finish: build phase for R-Rsamtools-2.18.0-2.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1727260963.126787/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rsamtools-2.18.0-2.fc42.src.rpm) Config(child) 1 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rsamtools", "epoch": null, "version": "2.18.0", "release": "2.fc42", "arch": "aarch64" }, { "name": "R-Rsamtools-debugsource", "epoch": null, "version": "2.18.0", "release": "2.fc42", "arch": "aarch64" }, { "name": "R-Rsamtools-debuginfo", "epoch": null, "version": "2.18.0", "release": "2.fc42", "arch": "aarch64" }, { "name": "R-Rsamtools", "epoch": null, "version": "2.18.0", "release": "2.fc42", "arch": "src" } ] } RPMResults finished