Warning: Permanently added '44.202.239.207' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8070956-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.73 PID: 28186 Logging PID: 28187 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 8070956, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '182c43679e59e40aad426b5e5c3102c8f19c65a6', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/seaview', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seaview', 'package_version': '5.0-11', 'project_dirname': 'zlib-ng-rebase-fedora', 'project_name': 'zlib-ng-rebase-fedora', 'project_owner': 'ljavorsk', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ljavorsk/zlib-ng-rebase-fedora/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'ljavorsk/zlib-ng-rebase-fedora--ljavorsk', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'ljavorsk', 'tags': [], 'task_id': '8070956-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/seaview /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/seaview', '/var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview'... Running: git checkout 182c43679e59e40aad426b5e5c3102c8f19c65a6 -- cmd: ['git', 'checkout', '182c43679e59e40aad426b5e5c3102c8f19c65a6', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview rc: 0 stdout: stderr: Note: switching to '182c43679e59e40aad426b5e5c3102c8f19c65a6'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 182c436 automatic import of seaview Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seaview_5.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o seaview_5.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ljavorsk/zlib-ng-rebase-fedora/seaview/seaview_5.0.tar.gz/md5/d9f1a97672efb3fd24850cf542326915/seaview_5.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 462k 100 462k 0 0 5960k 0 --:--:-- --:--:-- --:--:-- 6006k INFO: Reading stdout from command: md5sum seaview_5.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727359146.837508 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727359146.837508 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview/seaview.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727359146.837508/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727359146.837508/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/c61d04b00f3a194921c0189de421106de57372ce5a153e630de8a2adaa7428bb/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/c61d04b00f3a194921c0189de421106de57372ce5a153e630de8a2adaa7428bb/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1727359146.837508/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.6.2-1.fc42.aarch64 dnf5-plugins-5.2.6.2-1.fc42.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 274.6 KiB/s | 7.1 KiB | 00m00s Copr repository 100% | 76.8 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 45.9 MiB/s | 3.0 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.32-2.fc42 fedora 8.3 MiB bzip2 aarch64 1.0.8-19.fc41 fedora 427.6 KiB coreutils aarch64 9.5-9.fc42 fedora 20.8 MiB cpio aarch64 2.15-2.fc41 fedora 1.2 MiB diffutils aarch64 3.10-8.fc41 fedora 2.1 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils aarch64 1:4.10.0-4.fc41 fedora 2.1 MiB gawk aarch64 5.3.0-4.fc41 fedora 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-5.fc42 copr_base 0.0 B grep aarch64 3.11-9.fc41 fedora 1.1 MiB gzip aarch64 1.13-2.fc41 fedora 488.9 KiB info aarch64 7.1.1-1.fc42 fedora 613.6 KiB patch aarch64 2.7.6-25.fc41 fedora 390.6 KiB redhat-rpm-config noarch 296-1.fc42 fedora 186.6 KiB rpm-build aarch64 4.19.94-1.fc42 copr_base 525.9 KiB sed aarch64 4.9-3.fc41 fedora 1.0 MiB shadow-utils aarch64 2:4.16.0-4.fc42 fedora 7.3 MiB tar aarch64 2:1.35-4.fc41 fedora 3.1 MiB unzip aarch64 6.0-64.fc41 fedora 726.7 KiB util-linux aarch64 2.40.2-8.fc42 fedora 16.9 MiB which aarch64 2.21-42.fc41 fedora 248.2 KiB xz aarch64 1:5.6.2-2.fc41 fedora 1.5 MiB Installing dependencies: add-determinism aarch64 0.3.6-1.fc41 fedora 2.0 MiB alternatives aarch64 1.30-1.fc41 fedora 218.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs aarch64 4.0.2-1.fc41 fedora 547.4 KiB authselect aarch64 1.5.0-7.fc41 fedora 309.5 KiB authselect-libs aarch64 1.5.0-7.fc41 fedora 931.9 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils aarch64 2.43.50-1.fc42 copr_base 32.7 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B bzip2-libs aarch64 1.0.8-19.fc41 fedora 200.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.fc42 fedora 2.6 MiB coreutils-common aarch64 9.5-9.fc42 fedora 11.2 MiB cracklib aarch64 2.9.11-6.fc42 copr_base 422.9 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 fedora 136.9 KiB curl aarch64 8.10.1-2.fc42 copr_base 453.3 KiB cyrus-sasl-lib aarch64 2.1.28-27.fc41 fedora 3.1 MiB debugedit aarch64 5.0-17.fc41 fedora 499.2 KiB dwz aarch64 0.15-7.fc41 fedora 386.8 KiB ed aarch64 1.20.2-2.fc41 fedora 282.8 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils aarch64 0.191-8.fc41 fedora 4.9 MiB elfutils-debuginfod-client aarch64 0.191-8.fc41 fedora 396.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB elfutils-libelf aarch64 0.191-8.fc41 fedora 1.3 MiB elfutils-libs aarch64 0.191-8.fc41 fedora 938.3 KiB fedora-gpg-keys noarch 42-0.2 fedora 126.4 KiB fedora-release noarch 42-0.3 fedora 0.0 B fedora-release-identity-basic noarch 42-0.3 fedora 694.0 B fedora-repos noarch 42-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.2 fedora 2.2 KiB file aarch64 5.45-7.fc42 copr_base 139.5 KiB file-libs aarch64 5.45-7.fc42 copr_base 10.0 MiB filesystem aarch64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal aarch64 15.1-2.fc42 copr_base 12.9 MiB gdbm aarch64 1:1.23-7.fc41 fedora 928.5 KiB gdbm-libs aarch64 1:1.23-7.fc41 fedora 426.0 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc aarch64 2.40.9000-5.fc42 copr_base 6.2 MiB glibc-common aarch64 2.40.9000-5.fc42 copr_base 1.3 MiB glibc-gconv-extra aarch64 2.40.9000-5.fc42 copr_base 18.6 MiB gmp aarch64 1:6.3.0-2.fc41 fedora 722.0 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson aarch64 2.13.1-10.fc41 fedora 220.5 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-4.fc41 fedora 226.4 KiB krb5-libs aarch64 1.21.3-2.fc41 fedora 3.3 MiB libacl aarch64 2.3.2-2.fc41 fedora 196.1 KiB libarchive aarch64 3.7.6-1.fc42 copr_base 910.8 KiB libattr aarch64 2.5.2-4.fc41 fedora 196.6 KiB libblkid aarch64 2.40.2-8.fc42 fedora 418.6 KiB libbrotli aarch64 1.1.0-5.fc41 fedora 1.1 MiB libcap aarch64 2.70-4.fc41 fedora 1.4 MiB libcap-ng aarch64 0.8.5-3.fc41 fedora 417.2 KiB libcom_err aarch64 1.47.1-3.fc41 fedora 239.3 KiB libcurl aarch64 8.10.1-2.fc42 copr_base 794.4 KiB libeconf aarch64 0.6.2-3.fc41 fedora 206.1 KiB libevent aarch64 2.1.12-14.fc41 fedora 1.5 MiB libfdisk aarch64 2.40.2-8.fc42 fedora 482.9 KiB libffi aarch64 3.4.6-3.fc42 fedora 282.4 KiB libgcc aarch64 14.2.1-3.fc42 fedora 350.2 KiB libgomp aarch64 14.2.1-3.fc42 fedora 567.3 KiB libidn2 aarch64 2.3.7-2.fc41 fedora 457.2 KiB libmount aarch64 2.40.2-8.fc42 fedora 483.9 KiB libnghttp2 aarch64 1.63.0-1.fc42 copr_base 198.2 KiB libnsl2 aarch64 2.0.1-2.fc41 fedora 222.0 KiB libpkgconf aarch64 2.3.0-1.fc42 fedora 198.1 KiB libpsl aarch64 0.21.5-4.fc41 fedora 196.6 KiB libpwquality aarch64 1.4.5-11.fc41 fedora 1.1 MiB libselinux aarch64 3.7-6.fc42 fedora 265.1 KiB libsemanage aarch64 3.7-3.fc42 fedora 361.6 KiB libsepol aarch64 3.7-3.fc42 fedora 873.9 KiB libsmartcols aarch64 2.40.2-8.fc42 fedora 288.5 KiB libssh aarch64 0.11.1-1.fc42 copr_base 585.5 KiB libssh-config noarch 0.11.1-1.fc42 copr_base 277.0 B libstdc++ aarch64 14.2.1-3.fc42 fedora 2.8 MiB libtasn1 aarch64 4.19.0-9.fc41 fedora 283.8 KiB libtirpc aarch64 1.3.5-0.fc41 fedora 274.8 KiB libtool-ltdl aarch64 2.4.7-12.fc41 fedora 222.2 KiB libunistring aarch64 1.1-8.fc41 fedora 1.8 MiB libuuid aarch64 2.40.2-8.fc42 fedora 197.5 KiB libverto aarch64 0.3.2-9.fc41 fedora 197.5 KiB libxcrypt aarch64 4.4.36-7.fc41 fedora 399.0 KiB libxml2 aarch64 2.12.8-2.fc42 copr_base 1.9 MiB libzstd aarch64 1.5.6-2.fc41 fedora 796.0 KiB lua-libs aarch64 5.4.6-6.fc41 fedora 393.1 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs aarch64 1.10.0-1.fc41 fedora 261.6 KiB mpfr aarch64 4.2.1-5.fc41 fedora 818.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 fedora 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap aarch64 2.6.8-5.fc41 fedora 952.3 KiB openssl-libs aarch64 1:3.2.2-9.fc42 copr_base 6.4 MiB p11-kit aarch64 0.25.5-3.fc41 fedora 2.6 MiB p11-kit-trust aarch64 0.25.5-3.fc41 fedora 655.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam aarch64 1.6.1-6.fc42 fedora 11.0 MiB pam-libs aarch64 1.6.1-6.fc42 fedora 607.3 KiB pcre2 aarch64 10.44-1.fc41.1 fedora 905.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf aarch64 2.3.0-1.fc42 fedora 240.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 fedora 990.0 B popt aarch64 1.19-7.fc41 fedora 272.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B readline aarch64 8.2-11.fc42 fedora 753.3 KiB rpm aarch64 4.19.94-1.fc42 copr_base 3.3 MiB rpm-build-libs aarch64 4.19.94-1.fc42 copr_base 198.7 KiB rpm-libs aarch64 4.19.94-1.fc42 copr_base 734.0 KiB rpm-sequoia aarch64 1.7.0-2.fc41 fedora 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs aarch64 3.46.0-4.fc41 fedora 1.6 MiB systemd-libs aarch64 256.5-1.fc42 fedora 2.5 MiB util-linux-core aarch64 2.40.2-8.fc42 fedora 6.2 MiB xxhash-libs aarch64 0.8.2-3.fc41 fedora 212.3 KiB xz-libs aarch64 1:5.6.2-2.fc41 fedora 266.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip aarch64 3.0-41.fc41 fedora 1.1 MiB zlib-ng-compat aarch64 2.2.2-1.fc42 copr_base 197.6 KiB zstd aarch64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation, 264 MiB extra will be used (install 264 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] redhat-rpm-config-0:296-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] unzip-0:6.0-64.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] cpio-0:2.15-2.fc41.aarch64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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Already downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/155] Verify package files 100% | 665.0 B/s | 153.0 B | 00m00s [ 2/155] Prepare transaction 100% | 2.4 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-3. 100% | 171.8 MiB/s | 351.9 KiB | 00m00s [ 4/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 6/155] Installing fedora-gpg-keys-0: 100% | 28.0 MiB/s | 172.2 KiB | 00m00s [ 7/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/155] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [ 10/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 11/155] Installing setup-0:2.15.0-5.f 100% | 41.7 MiB/s | 726.1 KiB | 00m00s [ 12/155] Installing filesystem-0:3.18- 100% | 2.1 MiB/s | 212.6 KiB | 00m00s [ 13/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 14/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 15/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 16/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 42.9 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/155] Installing ncurses-libs-0:6.5 100% | 249.9 MiB/s | 2.2 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 20/155] Installing glibc-0:2.40.9000- 100% | 177.2 MiB/s | 6.2 MiB | 00m00s [ 21/155] Installing bash-0:5.2.32-2.fc 100% | 277.1 MiB/s | 8.3 MiB | 00m00s [ 22/155] Installing glibc-common-0:2.4 100% | 165.0 MiB/s | 1.3 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 23/155] Installing glibc-gconv-extra- 100% | 322.3 MiB/s | 18.7 MiB | 00m00s [ 24/155] Installing zlib-ng-compat-0:2 100% | 193.8 MiB/s | 198.5 KiB | 00m00s [ 25/155] Installing 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libpwquality-0:1.4 100% | 138.5 MiB/s | 1.1 MiB | 00m00s [114/155] Installing libnsl2-0:2.0.1-2. 100% | 109.0 MiB/s | 223.2 KiB | 00m00s [115/155] Installing pam-0:1.6.1-6.fc42 100% | 334.5 MiB/s | 11.0 MiB | 00m00s [116/155] Installing libssh-0:0.11.1-1. 100% | 191.3 MiB/s | 587.6 KiB | 00m00s [117/155] Installing rpm-sequoia-0:1.7. 100% | 287.1 MiB/s | 2.3 MiB | 00m00s [118/155] Installing rpm-libs-0:4.19.94 100% | 239.4 MiB/s | 735.5 KiB | 00m00s [119/155] Installing rpm-build-libs-0:4 100% | 194.7 MiB/s | 199.4 KiB | 00m00s [120/155] Installing libevent-0:2.1.12- 100% | 304.7 MiB/s | 1.5 MiB | 00m00s [121/155] Installing openldap-0:2.6.8-5 100% | 233.4 MiB/s | 956.1 KiB | 00m00s [122/155] Installing libcurl-0:8.10.1-2 100% | 194.2 MiB/s | 795.5 KiB | 00m00s [123/155] Installing elfutils-debuginfo 100% | 194.8 MiB/s | 398.9 KiB | 00m00s [124/155] Installing elfutils-0:0.191-8 100% | 381.1 MiB/s | 5.0 MiB | 00m00s [125/155] Installing binutils-0:2.43.50 100% | 321.0 MiB/s | 32.7 MiB | 00m00s [126/155] Installing gdb-minimal-0:15.1 100% | 269.1 MiB/s | 12.9 MiB | 00m00s [127/155] Installing debugedit-0:5.0-17 100% | 245.1 MiB/s | 502.0 KiB | 00m00s [128/155] Installing curl-0:8.10.1-2.fc 100% | 37.1 MiB/s | 455.8 KiB | 00m00s [129/155] Installing rpm-0:4.19.94-1.fc 100% | 113.8 MiB/s | 2.7 MiB | 00m00s [130/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [131/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [132/155] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 130.5 MiB/s | 534.5 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 339.1 MiB/s | 17.0 MiB | 00m00s [153/155] Installing authselect-0:1.5.0 100% | 76.6 MiB/s | 313.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [155/155] Installing info-0:7.1.1-1.fc4 100% | 257.9 KiB/s | 614.1 KiB | 00m02s Warning: skipped PGP checks for 22 packages from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.aarch64 alternatives-1.30-1.fc41.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.aarch64 authselect-1.5.0-7.fc41.aarch64 authselect-libs-1.5.0-7.fc41.aarch64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.aarch64 binutils-2.43.50-1.fc42.aarch64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.aarch64 bzip2-libs-1.0.8-19.fc41.aarch64 ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch coreutils-9.5-9.fc42.aarch64 coreutils-common-9.5-9.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc42.aarch64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.10.1-2.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.0-17.fc41.aarch64 diffutils-3.10-8.fc41.aarch64 dwz-0.15-7.fc41.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.aarch64 elfutils-debuginfod-client-0.191-8.fc41.aarch64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.aarch64 elfutils-libs-0.191-8.fc41.aarch64 fedora-gpg-keys-42-0.2.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.2.noarch fedora-repos-rawhide-42-0.2.noarch file-5.45-7.fc42.aarch64 file-libs-5.45-7.fc42.aarch64 filesystem-3.18-29.fc42.aarch64 findutils-4.10.0-4.fc41.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.1-2.fc42.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-5.fc42.aarch64 glibc-common-2.40.9000-5.fc42.aarch64 glibc-gconv-extra-2.40.9000-5.fc42.aarch64 glibc-minimal-langpack-2.40.9000-5.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.aarch64 gzip-1.13-2.fc41.aarch64 info-7.1.1-1.fc42.aarch64 jansson-2.13.1-10.fc41.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.aarch64 krb5-libs-1.21.3-2.fc41.aarch64 libacl-2.3.2-2.fc41.aarch64 libarchive-3.7.6-1.fc42.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc41.aarch64 libcap-2.70-4.fc41.aarch64 libcap-ng-0.8.5-3.fc41.aarch64 libcom_err-1.47.1-3.fc41.aarch64 libcurl-8.10.1-2.fc42.aarch64 libeconf-0.6.2-3.fc41.aarch64 libevent-2.1.12-14.fc41.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-14.2.1-3.fc42.aarch64 libgomp-14.2.1-3.fc42.aarch64 libidn2-2.3.7-2.fc41.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.63.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc41.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc41.aarch64 libpwquality-1.4.5-11.fc41.aarch64 libselinux-3.7-6.fc42.aarch64 libsemanage-3.7-3.fc42.aarch64 libsepol-3.7-3.fc42.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-3.fc42.aarch64 libtasn1-4.19.0-9.fc41.aarch64 libtirpc-1.3.5-0.fc41.aarch64 libtool-ltdl-2.4.7-12.fc41.aarch64 libunistring-1.1-8.fc41.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.36-7.fc41.aarch64 libxml2-2.12.8-2.fc42.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.6-6.fc41.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.aarch64 mpfr-4.2.1-5.fc41.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.aarch64 openssl-libs-3.2.2-9.fc42.aarch64 p11-kit-0.25.5-3.fc41.aarch64 p11-kit-trust-0.25.5-3.fc41.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.aarch64 pam-libs-1.6.1-6.fc42.aarch64 patch-2.7.6-25.fc41.aarch64 pcre2-10.44-1.fc41.1.aarch64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc41.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.0-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-296-1.fc42.noarch rpm-4.19.94-1.fc42.aarch64 rpm-build-4.19.94-1.fc42.aarch64 rpm-build-libs-4.19.94-1.fc42.aarch64 rpm-libs-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-4.fc42.aarch64 sqlite-libs-3.46.0-4.fc41.aarch64 systemd-libs-256.5-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-64.fc41.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.2-3.fc41.aarch64 xz-5.6.2-2.fc41.aarch64 xz-libs-5.6.2-2.fc41.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.aarch64 zlib-ng-compat-2.2.2-1.fc42.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721952000 Wrote: /builddir/build/SRPMS/seaview-5.0-11.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-aarch64-1727359146.837508/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1727359146.837508/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-wsvrfcdz/seaview/seaview.spec) Config(child) 0 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/seaview-5.0-11.fc42.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727359146.837508/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1727359146.837508/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1727359146.837508/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.aarch64 rpm-sequoia-1.7.0-2.fc41.aarch64 dnf5-5.2.6.2-1.fc42.aarch64 dnf5-plugins-5.2.6.2-1.fc42.aarch64 Finish: chroot init Start: build phase for seaview-5.0-11.fc42.src.rpm Start: build setup for seaview-5.0-11.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721952000 Wrote: /builddir/build/SRPMS/seaview-5.0-11.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 85.3 KiB/s | 1.5 KiB | 00m00s fedora 100% | 32.3 KiB/s | 7.1 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils aarch64 0.27-2.fc41 fedora 638.4 KiB fltk-devel aarch64 1.3.8-10.fc42 copr_base 42.2 MiB gcc-c++ aarch64 14.2.1-3.fc42 fedora 35.0 MiB libXinerama-devel aarch64 1.1.5-7.fc41 fedora 7.0 KiB make aarch64 1:4.4.1-8.fc41 fedora 1.8 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc aarch64 12.70-1.fc42 fedora 1.1 MiB brotli aarch64 1.1.0-5.fc41 fedora 195.8 KiB brotli-devel aarch64 1.1.0-5.fc41 fedora 65.6 KiB bzip2-devel aarch64 1.0.8-19.fc41 fedora 309.8 KiB cairo aarch64 1.18.0-4.fc42 copr_base 1.9 MiB cairo-devel aarch64 1.18.0-4.fc42 copr_base 2.3 MiB cmake-filesystem aarch64 3.28.3-7.fc41 fedora 0.0 B cpp aarch64 14.2.1-3.fc42 fedora 31.8 MiB default-fonts-core-sans noarch 4.1-3.fc42 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat aarch64 2.6.3-1.fc42 fedora 539.6 KiB fltk aarch64 1.3.8-10.fc42 copr_base 1.6 MiB fontconfig aarch64 2.15.0-8.fc41 fedora 2.4 MiB fontconfig-devel aarch64 2.15.0-8.fc41 fedora 117.2 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype aarch64 2.13.2-6.fc42 copr_base 814.9 KiB freetype-devel aarch64 2.13.2-6.fc42 copr_base 7.8 MiB gcc aarch64 14.2.1-3.fc42 fedora 93.8 MiB gcc-plugin-annobin aarch64 14.2.1-3.fc42 fedora 197.1 KiB gettext aarch64 0.22.5-6.fc41 fedora 8.2 MiB gettext-envsubst aarch64 0.22.5-6.fc41 fedora 234.9 KiB gettext-libs aarch64 0.22.5-6.fc41 fedora 2.0 MiB gettext-runtime aarch64 0.22.5-6.fc41 fedora 793.2 KiB glib2 aarch64 2.82.1-1.fc42 copr_base 15.3 MiB glib2-devel aarch64 2.82.1-1.fc42 copr_base 15.9 MiB glibc-devel aarch64 2.40.9000-5.fc42 copr_base 2.2 MiB gnutls aarch64 3.8.7-4.fc42 fedora 3.4 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 aarch64 1.3.14-16.fc41 fedora 495.9 KiB graphite2-devel aarch64 1.3.14-16.fc41 fedora 49.1 KiB harfbuzz aarch64 9.0.0-3.fc42 fedora 2.8 MiB harfbuzz-cairo aarch64 9.0.0-3.fc42 fedora 196.3 KiB harfbuzz-devel aarch64 9.0.0-3.fc42 fedora 5.7 MiB harfbuzz-icu aarch64 9.0.0-3.fc42 fedora 195.5 KiB hwdata noarch 0.387-1.fc42 fedora 9.2 MiB kernel-headers aarch64 6.11.0-63.fc42 fedora 6.3 MiB libICE aarch64 1.1.1-4.fc41 fedora 273.1 KiB libICE-devel aarch64 1.1.1-4.fc41 fedora 261.8 KiB libSM aarch64 1.2.4-4.fc41 fedora 253.4 KiB libSM-devel aarch64 1.2.4-4.fc41 fedora 18.8 KiB libX11 aarch64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libX11-devel aarch64 1.8.10-2.fc42 fedora 1.0 MiB libX11-xcb aarch64 1.8.10-2.fc42 fedora 195.1 KiB libXau aarch64 1.0.11-7.fc41 fedora 242.9 KiB libXau-devel aarch64 1.0.11-7.fc41 fedora 6.4 KiB libXcursor aarch64 1.2.2-2.fc41 fedora 197.6 KiB libXext aarch64 1.3.6-2.fc41 fedora 210.0 KiB libXext-devel aarch64 1.3.6-2.fc41 fedora 98.9 KiB libXfixes aarch64 6.0.1-4.fc41 fedora 198.4 KiB libXft aarch64 2.3.8-7.fc41 fedora 256.5 KiB libXft-devel aarch64 2.3.8-7.fc41 fedora 31.7 KiB libXinerama aarch64 1.1.5-7.fc41 fedora 199.1 KiB libXrender aarch64 0.9.11-7.fc41 fedora 198.2 KiB libXrender-devel aarch64 0.9.11-7.fc41 fedora 50.1 KiB libXt aarch64 1.3.0-4.fc41 fedora 541.7 KiB libXt-devel aarch64 1.3.0-4.fc41 fedora 1.6 MiB libXxf86vm aarch64 1.1.5-7.fc41 fedora 197.4 KiB libasan aarch64 14.2.1-3.fc42 fedora 1.6 MiB libatomic aarch64 14.2.1-3.fc42 fedora 196.9 KiB libb2 aarch64 0.98.1-12.fc41 fedora 202.2 KiB libblkid-devel aarch64 2.40.2-8.fc42 fedora 44.9 KiB libdrm aarch64 2.4.123-1.fc42 fedora 1.6 MiB libedit aarch64 3.1-53.20240808cvs.fc41 fedora 344.2 KiB libffi-devel aarch64 3.4.6-3.fc42 fedora 29.9 KiB libglvnd aarch64 1:1.7.0-5.fc41 fedora 1.5 MiB libglvnd-core-devel aarch64 1:1.7.0-5.fc41 fedora 40.3 KiB libglvnd-devel aarch64 1:1.7.0-5.fc41 fedora 2.1 MiB libglvnd-egl aarch64 1:1.7.0-5.fc41 fedora 196.9 KiB libglvnd-gles aarch64 1:1.7.0-5.fc41 fedora 650.3 KiB libglvnd-glx aarch64 1:1.7.0-5.fc41 fedora 1.2 MiB libglvnd-opengl aarch64 1:1.7.0-5.fc41 fedora 457.1 KiB libicu aarch64 74.2-2.fc41 fedora 35.6 MiB libicu-devel aarch64 74.2-2.fc41 fedora 5.7 MiB libjpeg-turbo aarch64 3.0.4-1.fc42 fedora 796.8 KiB libjpeg-turbo-devel aarch64 3.0.4-1.fc42 fedora 353.1 KiB libmount-devel aarch64 2.40.2-8.fc42 fedora 63.5 KiB libmpc aarch64 1.3.1-6.fc41 fedora 280.8 KiB libpciaccess aarch64 0.16-13.fc41 fedora 200.7 KiB libpng aarch64 2:1.6.44-1.fc42 copr_base 269.9 KiB libpng-devel aarch64 2:1.6.44-1.fc42 copr_base 949.9 KiB libselinux-devel aarch64 3.7-6.fc42 fedora 126.5 KiB libsepol-devel aarch64 3.7-3.fc42 fedora 120.3 KiB libstdc++-devel aarch64 14.2.1-3.fc42 fedora 15.1 MiB libtextstyle aarch64 0.22.5-6.fc41 fedora 263.3 KiB libubsan aarch64 14.2.1-3.fc42 fedora 539.3 KiB libuuid-devel aarch64 2.40.2-8.fc42 fedora 40.9 KiB libwayland-client aarch64 1.23.0-2.fc41 fedora 198.2 KiB libwayland-server aarch64 1.23.0-2.fc41 fedora 198.7 KiB libxcb aarch64 1.17.0-2.fc41 fedora 5.0 MiB libxcb-devel aarch64 1.17.0-2.fc41 fedora 2.7 MiB libxcrypt-devel aarch64 4.4.36-7.fc41 fedora 30.3 KiB libxml2-devel aarch64 2.12.8-2.fc42 copr_base 3.4 MiB libxshmfence aarch64 1.3.2-4.fc41 fedora 195.5 KiB llvm-libs aarch64 18.1.8-2.fc41 fedora 106.0 MiB lm_sensors-libs aarch64 3.6.0-20.fc41 fedora 221.9 KiB mesa-dri-drivers aarch64 24.2.3-3.fc42 copr_base 100.5 MiB mesa-filesystem aarch64 24.2.3-3.fc42 copr_base 3.6 KiB mesa-libEGL aarch64 24.2.3-3.fc42 copr_base 396.1 KiB mesa-libGL aarch64 24.2.3-3.fc42 copr_base 661.7 KiB mesa-libGLU aarch64 9.0.3-5.fc41 fedora 393.6 KiB mesa-libGLU-devel aarch64 9.0.3-5.fc41 fedora 17.0 KiB mesa-libgbm aarch64 24.2.3-3.fc42 copr_base 69.3 KiB mesa-libglapi aarch64 24.2.3-3.fc42 copr_base 333.1 KiB mpdecimal aarch64 2.5.1-16.fc41 fedora 328.9 KiB nettle aarch64 3.10-3.fc41 fedora 956.7 KiB pcre2-devel aarch64 10.44-1.fc41.1 fedora 2.0 MiB pcre2-utf16 aarch64 10.44-1.fc41.1 fedora 645.9 KiB pcre2-utf32 aarch64 10.44-1.fc41.1 fedora 645.8 KiB pixman aarch64 0.43.4-2.fc41 fedora 718.4 KiB pixman-devel aarch64 0.43.4-2.fc41 fedora 49.4 KiB python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB python3 aarch64 3.13.0~rc2-3.fc42 copr_base 83.8 KiB python3-libs aarch64 3.13.0~rc2-3.fc42 copr_base 42.2 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB sysprof-capture-devel aarch64 47.0-1.fc42 fedora 277.8 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xz-devel aarch64 1:5.6.2-2.fc41 fedora 255.6 KiB zlib-ng-compat-devel aarch64 2.2.2-1.fc42 copr_base 106.8 KiB Transaction Summary: Installing: 129 packages Total size of inbound packages is 161 MiB. 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Finish: build setup for seaview-5.0-11.fc42.src.rpm Start: rpmbuild seaview-5.0-11.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721952000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.vThX8a + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + test -d /builddir/build/BUILD/seaview-5.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/seaview-5.0-build + /usr/bin/rm -rf /builddir/build/BUILD/seaview-5.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.hHjcPO + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + cd /builddir/build/BUILD/seaview-5.0-build + rm -rf seaview + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seaview_5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seaview + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (seaview-chris.patch):' Patch #0 (seaview-chris.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0 patching file csrc/dnapars.c patching file csrc/phylip.c patching file csrc/phylip.h patching file csrc/protpars.c patching file Makefile + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nGi0yY + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + make -j4 g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx regions.cxx: In function ‘void save_active_region(SEA_VIEW*)’: regions.cxx:502:10: warning: variable ‘taille’ set but not used [-Wunused-but-set-variable] 502 | int tmp, taille; | ^~~~~~ use_mase_files.cxx: In function ‘int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:215:9: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~~ use_mase_files.cxx:215:69: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~ regions.cxx: In function ‘int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:313:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 313 | system(cmd); | ~~~~~~^~~~~ use_mase_files.cxx: In function ‘int read_clustal_align(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:623:17: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 623 | while(*p==' ') p--; *(p+1)=0; | ^~~~~ use_mase_files.cxx:623:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 623 | while(*p==' ') p--; *(p+1)=0; | ^ seaview.cxx: In function ‘int delete_selected_seqs(SEA_VIEW*)’: seaview.cxx:1770:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1770 | for(i = 0, j = 0; i< view->tot_seqs; i++) | ^~~ seaview.cxx:1773:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1773 | memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) ); | ^~~~~~ seaview.cxx: In function ‘void colors_callback(Fl_Widget*, void*)’: seaview.cxx:1924:15: warning: variable ‘item’ set but not used [-Wunused-but-set-variable] 1924 | Fl_Menu_Item *item; | ^~~~ seaview.cxx: In function ‘void delete_tmp_filename(const char*)’: seaview.cxx:653:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 653 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function ‘char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)’: seaview.cxx:2916:45: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2916 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ regions.cxx:291:26: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); | ^~ ~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from regions.cxx:1: In function ‘sprintf’, inlined from ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’ at regions.cxx:291:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 16 or more bytes (assuming 4111) into a destination of size 500 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ regions.cxx: In function ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:343:42: warning: ‘last’ may be used uninitialized [-Wmaybe-uninitialized] 343 | memmove(cmd, last, l + 1 - (last - cmd)); | ~~~~~^~~~~ regions.cxx:246:56: note: ‘last’ was declared here 246 | char base_fname[PATH_MAX], fname[PATH_MAX], *p, *q, *last; | ^~~~ regions.cxx: In function ‘site_mask_creation_dialog(_SEA_VIEW*, position_mask*)’: regions.cxx:745:10: warning: ‘retval’ may be used uninitialized [-Wmaybe-uninitialized] 745 | return retval; | ^~~~~~ regions.cxx:687:15: note: ‘retval’ was declared here 687 | const char *retval; | ^~~~~~ seaview.cxx: In function ‘help_callback(Fl_Widget*, void*)’: seaview.cxx:3633:53: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 3633 | "Help file %s\nnot found in PATH directories nor in current directory", help_file | ^~ seaview.cxx: In function ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’: seaview.cxx:1141:23: warning: ‘%7d’ directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=] 1141 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); | ^~~ seaview.cxx:1141:22: note: directive argument in the range [-2147483648, 2147483646] 1141 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); | ^~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from seaview.cxx:67: In function ‘sprintf’, inlined from ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’ at seaview.cxx:1141:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx use_mase_files.cxx: In function ‘read_mase_seqs_header(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:167:32: warning: ‘lpre’ may be used uninitialized [-Wmaybe-uninitialized] 167 | if(lpre+lseq > curr_max_header) { | ~~~~^~~~~ use_mase_files.cxx:137:18: note: ‘lpre’ was declared here 137 | int l, lenseqs, lpre, lseq, l2, totseqs = -1, want_header, curr_max_header; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx use_mase_files.cxx: In function ‘read_phylip_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:521:7: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized] 521 | l = q - seq[totseqs - 1]; | ~~^~~~~~~~~~~~~~~~~~ use_mase_files.cxx:466:11: note: ‘q’ was declared here 466 | char *p, *q; | ^ use_mase_files.cxx: In function ‘read_clustal_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:617:61: warning: ‘wid_name’ may be used uninitialized [-Wmaybe-uninitialized] 617 | seqname[curr_spec] = (char *)malloc(wid_name+1); | ~~~~~~~~^~ use_mase_files.cxx:564:16: note: ‘wid_name’ was declared here 564 | carac, wid_name; | ^~~~~~~~ use_mase_files.cxx:637:17: warning: ‘curr_max_len’ may be used uninitialized [-Wmaybe-uninitialized] 637 | if(curr_len + l > curr_max_len) { | ^~ use_mase_files.cxx:563:64: note: ‘curr_max_len’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^~~~~~~~~~~~ use_mase_files.cxx:650:15: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized] 650 | memcpy(seq[curr_spec]+curr_len, line + wid_name, l); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:563:8: note: ‘l’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^ align.cxx: In function ‘void replace_stars(char*)’: align.cxx:1302:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:944:30: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from align.cxx:1: In function ‘sprintf’, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:944:8: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:946:21: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:946:21: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1831:35: warning: ‘lines_per_page’ may be used uninitialized [-Wmaybe-uninitialized] 1831 | if( use_pdf && (!firstpage) && (curr_lines + view->tot_seqs + nl > lines_per_page)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:32: note: ‘lines_per_page’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~~~~~ use_mase_files.cxx:1767:14: warning: ‘top_margin’ may be used uninitialized [-Wmaybe-uninitialized] 1767 | fl_draw(oneline, margin, top_margin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:66: note: ‘top_margin’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~ In function ‘color_pdf_display(_SEA_VIEW*, int (*)(int), char*, int, double, double, int, double, double, int, int)’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1916:34: use_mase_files.cxx:1980:33: warning: ‘descender’ may be used uninitialized [-Wmaybe-uninitialized] 1980 | fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize); | ~~~~~~~~~~~~~^~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1689:42: note: ‘descender’ was declared here 1689 | double char_width = fontsize/2, descender, margin = 25; | ^~~~~~~~~ use_mase_files.cxx:1766:51: warning: ‘surface’ may be used uninitialized [-Wmaybe-uninitialized] 1766 | ((Fl_PDF_or_PS_File_Device*)surface)->origin(0, fontsize); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ use_mase_files.cxx:1679:22: note: ‘surface’ was declared here 1679 | Fl_Surface_Device *surface; | ^~~~~~~ In file included from /usr/include/string.h:548, from seaview.h:5, from use_mase_files.cxx:1: In function ‘memset’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1820:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘vary_pos’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1686:8: note: ‘vary_pos’ was declared here 1686 | int *vary_pos; /* rang ds alignement de la colonne imprimŽe */ | ^~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:968:22: align.cxx:991:18: note: directive argument in the range [1, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:968:22: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 24 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:973:17: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 973 | sprintf(tmp, "%d", reponse); | ^~ align.cxx:973:16: note: directive argument in the range [0, 2147483646] 973 | sprintf(tmp, "%d", reponse); | ^~~~ In function ‘sprintf’, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:973:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 2 and 11 bytes into a destination of size 5 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:825:31: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:825:8: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:835:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 835 | sprintf(msa_name, "msa_name_%d", num + 1); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:835:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:837:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 837 | sprintf(msa_name, "msa_name_%d", num); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:837:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:840:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 840 | sprintf(msa_name, "msa_args_%d", num + 1); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:840:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:842:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 842 | sprintf(msa_name, "msa_args_%d", num); | ^ In function ‘sprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:842:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:845:24: align.cxx:991:18: note: directive argument in the range [-2147483646, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:845:24: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:39: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483646] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:39: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:26: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483646] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:26: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:873:21: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:873:21: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx seaview.cxx: In function ‘goto_callback(Fl_Widget*, void*)’: seaview.cxx:2745:16: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2745 | strncpy(target, p, l); target[l] = 0; majuscules(target); | ^ seaview.cxx:2743:19: note: length computed here 2743 | l = strlen(p); | ~~~~~~^~~ align.cxx: In function ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:614:24: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:614:24: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘cre_align_menu(_SEA_VIEW*)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:749:23: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:749:23: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘get_algo_opts(int, char**)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32: align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘get_opt_resname(int)’: align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:991:8: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘format_conversion(int, char**)’: use_mase_files.cxx:2369:3: warning: ‘err_message’ may be used uninitialized [-Wmaybe-uninitialized] 2369 | if (err_message) { | ^~ use_mase_files.cxx:2171:9: note: ‘err_message’ was declared here 2171 | char *err_message, *p; | ^~~~~~~~~~~ use_mase_files.cxx:2270:27: warning: ‘current_seg’ may be used uninitialized [-Wmaybe-uninitialized] 2270 | current_seg->next = seg; | ~~~~~~~~~~~~~~~~~~^~~~~ use_mase_files.cxx:2235:20: note: ‘current_seg’ was declared here 2235 | list_segments *current_seg; | ^~~~~~~~~~~ In file included from /usr/include/string.h:548, from seaview.h:5: In function ‘memset’, inlined from ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’ at seaview.cxx:3691:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘gapcolor’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’: seaview.cxx:3671:8: note: ‘gapcolor’ was declared here 3671 | int l, gapcolor, *plength; | ^~~~~~~~ align.cxx: In function ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’: align.cxx:1345:42: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 1345 | sprintf(seqname[num], "S_%d", num); | ^~ align.cxx:1345:39: note: directive argument in the range [0, 2147483646] 1345 | sprintf(seqname[num], "S_%d", num); | ^~~~~~ In function ‘sprintf’, inlined from ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’ at align.cxx:1345:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘unalign(_SEA_VIEW*)’: align.cxx:1415:91: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1415 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1387:15: note: ‘calc_color_function’ was declared here 1387 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘del_gap_only_sites(_SEA_VIEW*)’: seaview.cxx:1707:23: warning: ‘debut’ may be used uninitialized [-Wmaybe-uninitialized] 1707 | count = position - debut; | ~~~~~~^~~~~~~~~~~~~~~~~~ seaview.cxx:1686:39: note: ‘debut’ was declared here 1686 | int position, numseq, allgaps, inrun, debut, count; | ^~~~~ align.cxx: In function ‘replace_align_part(_SEA_VIEW*, int, int, char*, int, int, int*, align_choice, char const**)’: align.cxx:455:83: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 455 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:300:7: note: ‘calc_color_function’ was declared here 300 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx seaview.cxx: In function ‘delete_selected_seqs(_SEA_VIEW*)’: seaview.cxx:1741:48: warning: ‘temp_data’ may be used uninitialized [-Wmaybe-uninitialized] 1741 | if( ! view->sel_seqs[i] ) temp_data[j++] = (void *) view->sequence[i]; | ^ seaview.cxx:1729:8: note: ‘temp_data’ was declared here 1729 | void **temp_data; | ^~~~~~~~~ seaview.cxx:1766:47: warning: ‘temp_int’ may be used uninitialized [-Wmaybe-uninitialized] 1766 | if( ! view->sel_seqs[i] ) temp_int[j++]= view->each_length[i]; | ^ seaview.cxx:1731:26: note: ‘temp_int’ was declared here 1731 | int new_tot_seqs, i, j, *temp_int, numset; | ^~~~~~~~ xfmatpt.cxx: In function ‘change_comput_params(Fl_Widget*, void*)’: xfmatpt.cxx:750:24: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 750 | sprintf(tmp,"%d", fdui->identites); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from matpt.h:3, from xfmatpt.cxx:1: In function ‘sprintf’, inlined from ‘change_comput_params(Fl_Widget*, void*)’ at xfmatpt.cxx:750:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘profile_align(_SEA_VIEW*)’: align.cxx:1281:90: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1281 | view->col_rank[table[num]][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1108:15: note: ‘calc_color_function’ was declared here 1108 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘edit_menu_callback(Fl_Widget*, void*)’: seaview.cxx:2580:17: warning: ‘new_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2580 | new_pos += 2; | ~~~~~~~~^~~~ seaview.cxx:2564:30: note: ‘new_pos’ was declared here 2564 | int old_total, *tmp, new_pos, i, old_first_seq; | ^~~~~~~ align.cxx: In function ‘command_line_align(int, char**)’: align.cxx:1507:37: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); | ^~ align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘command_line_align(int, char**)’ at align.cxx:1507:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx xfmatpt.cxx: In function ‘really_close(FD_matpt*)’: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function ‘show_dot_plot(char*, char*, char*, char*, int, int, int, void*)’: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ~~~~^~~~~~~~~~~~~~~ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx seaview.cxx: In function ‘handle_keyboard(_SEA_VIEW*, unsigned int, int)’: seaview.cxx:4630:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4630 | if(count_each == multipl && | ^~ seaview.cxx:4594:20: note: ‘count_each’ was declared here 4594 | int count, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4757:17: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4757 | if(count_each == multipl && | ^~ seaview.cxx:4692:39: note: ‘count_each’ was declared here 4692 | int newlength = 0, count = 0, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4681:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4681 | if(count_each == multipl && view->regions != NULL) | ^~ seaview.cxx:4658:13: note: ‘count_each’ was declared here 4658 | int count_each; | ^~~~~~~~~~ seaview.cxx:4640:17: warning: ‘count’ may be used uninitialized [-Wmaybe-uninitialized] 4640 | new_pos = view->cursor_site - count; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx:4594:13: note: ‘count’ was declared here 4594 | int count, count_each, debut, fin, test; | ^~~~~ nexus.cxx: In function ‘next_token(_IO_FILE*)’: nexus.cxx:155:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 155 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:153:44: note: call to ‘realloc’ here 153 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ nexus.cxx:173:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 173 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:171:44: note: call to ‘realloc’ here 171 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx nexus.cxx: In function ‘process_taxa_taxlabels(_IO_FILE*, int)’: nexus.cxx:357:1: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized] 357 | if(p != NULL && *p != ';') skip_command(in); | ^~ nexus.cxx:343:7: note: ‘p’ was declared here 343 | char *p, **names; | ^ nexus.cxx: In function ‘build_list_pairs(_IO_FILE*, int)’: nexus.cxx:441:27: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized] 441 | next->fin = debut; | ~~~~~~~~~~^~~~~~~ nexus.cxx:424:30: note: ‘next’ was declared here 424 | list_segments *list = NULL, *next, *elt; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx nexus.cxx: In function ‘process_block_characters(_IO_FILE*, int*, char***, int*, int*)’: nexus.cxx:685:52: warning: ‘gap’ may be used uninitialized [-Wmaybe-uninitialized] 685 | seqs = process_chars_matrix(in, *nsites, gap, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 686 | *pntaxa, *taxnames, FALSE, matchchar, missing, *protein); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nexus.cxx:667:19: note: ‘gap’ was declared here 667 | int interleave=0, gap, matchchar = 0, missing = 0; | ^~~ concatenate.cxx: In function ‘concatenate(_SEA_VIEW*, _SEA_VIEW*, bool, bool, bool)’: concatenate.cxx:124:32: warning: ‘found’ may be used uninitialized [-Wmaybe-uninitialized] 124 | if (want_addgaps) found[j] = TRUE; | ^ concatenate.cxx:100:17: note: ‘found’ was declared here 100 | int i, j, l, *found, target_length = target->seq_length; | ^~~~~ concatenate.cxx:114:25: warning: ‘gaps’ may be used uninitialized [-Wmaybe-uninitialized] 114 | add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concatenate.cxx:101:9: note: ‘gaps’ was declared here 101 | char *gaps; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx trees.cxx: In function ‘matrix* Obs_Dist(allseq*, model*)’: trees.cxx:1577:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable] 1577 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘matrix* K80_dist_nogamma(allseq*)’: trees.cxx:1719:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable] 1719 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘void run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1297:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1297 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘void command_line_phylogeny(int, char**)’: trees.cxx:2790:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2790 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ trees.cxx: In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’: trees.cxx:2401:25: warning: pointer ‘bootstrap_trees_72’ used after ‘realloc’ [-Wuse-after-free] 2401 | q = tmpc + (q - bootstrap_trees); | ~~^~~~~~~~~~~~~~~~~ trees.cxx:2400:38: note: call to ‘realloc’ here 2400 | char *tmpc = (char*)realloc(bootstrap_trees, lbtrees + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1278:30: warning: pointer ‘b_tree_338’ used after ‘realloc’ [-Wuse-after-free] 1278 | q = tree2 + (q - b_tree); | ~~^~~~~~~~ trees.cxx:1277:38: note: call to ‘realloc’ here 1277 | tree2 = (char *)realloc(b_tree, l + 1); | ~~~~~~~^~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:366:43: warning: ‘compgroup’ may be used uninitialized [-Wmaybe-uninitialized] 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~ statistics.cxx:596:14: warning: ‘compgroupall’ may be used uninitialized [-Wmaybe-uninitialized] 596 | sprintf(p, "\n\nGroup %d : %.1f%%", i+1, compgroupall[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ statistics.cxx:366:55: note: ‘compgroupall’ was declared here 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from statistics.cxx:1: In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvmin’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:77: note: ‘titvmin’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:651:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvmax’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:86: note: ‘titvmax’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvminname1’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:369:9: note: ‘titvminname1’ was declared here 369 | char *titvminname1, *titvminname2; | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14: /usr/include/bits/stdio2.h:30:34: warning: ‘titvminname2’ may be used uninitialized [-Wmaybe-uninitialized] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:369:24: note: ‘titvminname2’ was declared here 369 | char *titvminname1, *titvminname2; | ^~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx least_squares_brl.cxx: In function ‘tree_btos(int**, int, double*, double*, double*, char**, noeud2**)’: least_squares_brl.cxx:373:41: warning: ‘tax1’ may be used uninitialized [-Wmaybe-uninitialized] 373 | p1 = bottomnode(arbre_s[tax1]); | ^~~~ least_squares_brl.cxx:310:48: note: ‘tax1’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:374:41: warning: ‘tax2’ may be used uninitialized [-Wmaybe-uninitialized] 374 | p2 = bottomnode(arbre_s[tax2]); | ^~~~ least_squares_brl.cxx:310:54: note: ‘tax2’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:349:17: warning: ‘sommebi’ may be used uninitialized [-Wmaybe-uninitialized] 349 | if (sommebi == 2) { | ^~ least_squares_brl.cxx:310:39: note: ‘sommebi’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~~~~ addbootstrap.cxx: In function ‘compute_consensus_tree(char**, int**, int)’: addbootstrap.cxx:895:7: warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized] 895 | if (k < height) { // columns were not all identical, try columns on 0-side of branch i | ^~ addbootstrap.cxx:853:13: note: ‘k’ was declared here 853 | int i, j, k, l, w, word, restbranches, j1; | ^ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2375:54: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2375 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); | ^~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36: trees.cxx:2375:32: note: directive argument in the range [1, 2147483647] 2375 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from trees.cxx:6: In function ‘sprintf’, inlined from ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’ at trees.cxx:2375:12, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 23 and 32 bytes into a destination of size 30 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2069:57: warning: ‘ best trees, ’ directive writing 13 bytes into a region of size between 12 and 21 [-Wformat-overflow=] 2069 | if (count_best > 1) sprintf(best, "consensus of %d best trees, ", count_best); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2069:34: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 28 and 37 bytes into a destination of size 35 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36: trees.cxx:2420:41: warning: ‘all_best’ may be used uninitialized [-Wmaybe-uninitialized] 2420 | if (count > 1) tree = add_equally_best(tree, all_best, count); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2353:40: note: ‘all_best’ was declared here 2353 | char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL; | ^~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx pseudoterminal.cxx: In function ‘int run_external_prog_in_pseudoterm(char*, const char*, const char*)’: pseudoterminal.cxx:342:32: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 342 | freopen(dialogfname, "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:344:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/FL/Fl_Return_Button.H:24, from seaview.h:18: In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2259:26: /usr/include/FL/Fl_Button.H:102:30: warning: ‘thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 102 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2165:20: note: ‘thorough_b’ was declared here 2165 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~ In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2260:36: /usr/include/FL/Fl_Button.H:102:30: warning: ‘less_thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 102 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2165:33: note: ‘less_thorough_b’ was declared here 2165 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~~~~~~ In file included from /usr/include/FL/Fl_Input.H:25, from seaview.h:16: In member function ‘Fl_Input_::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2262:22: /usr/include/FL/Fl_Input_.H:244:37: warning: ‘w_best’ may be used uninitialized [-Wmaybe-uninitialized] 244 | const char* value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2166:17: note: ‘w_best’ was declared here 2166 | Fl_Int_Input *w_best; | ^~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx unrooted.cxx: In function ‘hit try_angle_draw(float, int*, int*, float*, int, int, int, int)’: unrooted.cxx:634:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 634 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:634:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 634 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:635:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 635 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:635:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 635 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:636:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 636 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:636:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 636 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:637:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 637 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx:637:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 637 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ trees.cxx: In function ‘run_distance_method(_SEA_VIEW*, int, int, int, int, int, Fl_Box*, char const*, int, char const*, char const*, int, void (*)(char const*, ...), int, int)’: trees.cxx:520:24: warning: ‘display_tree’ may be used uninitialized [-Wmaybe-uninitialized] 520 | return display_tree; | ^~~~~~~~~~~~ trees.cxx:461:15: note: ‘display_tree’ was declared here 461 | char *display_tree, *bootstrap_trees = NULL, *err_mess, tree_label[100]=""; | ^~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1177:56: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=] 1177 | sprintf(args + strlen(args), " -u \"%s\"", tmp); | ^~ ~~~ In function ‘sprintf’, inlined from ‘run_phyml_callback(Fl_Widget*, void*)’ at trees.cxx:1177:13: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 7 and 4102 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ unrooted.cxx: In function ‘set_angles_noeuds(_bignoeud*, _bignoeud*, double, double*, double)’: unrooted.cxx:1121:48: warning: ‘poids1’ may be used uninitialized [-Wmaybe-uninitialized] 1121 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1080:20: note: ‘poids1’ was declared here 1080 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1121:64: warning: ‘poids2’ may be used uninitialized [-Wmaybe-uninitialized] 1121 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1080:28: note: ‘poids2’ was declared here 1080 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1128:16: warning: ‘poids’ may be used uninitialized [-Wmaybe-uninitialized] 1128 | return poids; | ^~~~~ unrooted.cxx:1080:13: note: ‘poids’ was declared here 1080 | int poids, poids1, poids2; | ^~~~~ treedraw.cxx: In function ‘count_node(noeud*, noeud*)’: treedraw.cxx:3305:15: warning: argument 2 null where non-null expected [-Wnonnull] 3305 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from seaview.h:5, from treedraw.h:4, from treedraw.cxx:18: /usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3305:52: warning: argument 2 null where non-null expected [-Wnonnull] 3305 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ treedraw.cxx:3305:89: warning: argument 2 null where non-null expected [-Wnonnull] 3305 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’ 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx trees.cxx: In function ‘command_line_phylogeny(int, char**)’: trees.cxx:2838:3: warning: ‘tree’ may be used uninitialized [-Wmaybe-uninitialized] 2838 | if (tree) { | ^~ trees.cxx:2741:9: note: ‘tree’ was declared here 2741 | char *tree, *p; | ^~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx tbe.cxx: In function ‘TBE_Compute(char*, char*)’: tbe.cxx:85:16: warning: pointer ‘ref_branches_65’ used after ‘free’ [-Wuse-after-free] 85 | TBE_PrintTree(newtree,fd_reftree,ref_branches, nboot); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tbe.cxx:83:7: note: call to ‘free’ here 83 | free(ref_branches); | ~~~~^~~~~~~~~~~~~~ g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx g++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/raa_acnuc.c csrc/raa_acnuc.c: In function ‘raa_bit1’: csrc/raa_acnuc.c:1083:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1083 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_bit0’: csrc/raa_acnuc.c:1093:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1093 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_copylist’: csrc/raa_acnuc.c:1114:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1114 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_zerolist’: csrc/raa_acnuc.c:1124:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1124 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_setliststate’: csrc/raa_acnuc.c:1134:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1134 | char *reponse, str_type[3]; | ^~~~~~~ FL/Fl_SVG_Image.cxx: In function ‘svg_inflate(char const*)’: FL/Fl_SVG_Image.cxx:87:20: warning: pointer ‘out_25’ used after ‘realloc’ [-Wuse-after-free] 87 | p = tmp + (p - out); | ~~^~~~~ FL/Fl_SVG_Image.cxx:86:33: note: call to ‘realloc’ here 86 | char *tmp = (char*)realloc(out, out_size + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx: In function ‘void treerecs_dialog(Fl_Widget*, void*)’: treerecs_draw.cxx:489:20: warning: unused variable ‘recphylowml_window’ [-Wunused-variable] 489 | Fl_Window* recphylowml_window = | ^~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:455:9: warning: unused variable ‘status’ [-Wunused-variable] 455 | int status = | ^~~~~~ treerecs_draw.cxx: In member function ‘virtual void Fl_SVG_Box::draw()’: treerecs_draw.cxx:654:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 654 | while(i < svgtexts_size){ | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor ‘Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, const char*)’: treerecs_draw.cxx:738:10: warning: ‘Fl_SVG_Box::zoom’ will be initialized after [-Wreorder] 738 | double zoom; | ^~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/parser.c treerecs_draw.cxx:736:10: warning: ‘double Fl_SVG_Box::svg_shift_x’ [-Wreorder] 736 | double svg_shift_x; | ^~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx:737:10: warning: ‘Fl_SVG_Box::svg_shift_y’ will be initialized after [-Wreorder] 737 | double svg_shift_y; | ^~~~~~~~~~~ treerecs_draw.cxx:733:16: warning: ‘unsigned int Fl_SVG_Box::svgtexts_size’ [-Wreorder] 733 | unsigned int svgtexts_size; | ^~~~~~~~~~~~~ treerecs_draw.cxx:686:13: warning: when initialized here [-Wreorder] 686 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx: In destructor ‘virtual Fl_SVG_Box::~Fl_SVG_Box()’: treerecs_draw.cxx:722:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 722 | for(int i = 0; i < svgtexts_size ; i++) { | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor ‘SVG_View_data::SVG_View_data()’: treerecs_draw.cxx:762:15: warning: ‘SVG_View_data::reconciliation_score_message’ will be initialized after [-Wreorder] 762 | const char* reconciliation_score_message; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:759:9: warning: ‘float SVG_View_data::total_cost’ [-Wreorder] 759 | float total_cost; | ^~~~~~~~~~ treerecs_draw.cxx:764:3: warning: when initialized here [-Wreorder] 764 | SVG_View_data() : | ^~~~~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/md5.c csrc/md5.c:200:34: warning: argument 1 of type ‘uint32[4]’ {aka ‘unsigned int[4]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ csrc/md5.c:47:35: note: previously declared as ‘uint32 *’ {aka ‘unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~^~~ csrc/md5.c:200:55: warning: argument 2 of type ‘const uint32[16]’ {aka ‘const unsigned int[16]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ csrc/md5.c:47:54: note: previously declared as ‘const uint32 *’ {aka ‘const unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~~~~~~~^~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/zsockr.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/misc_acnuc.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/dnapars.c csrc/dnapars.c: In function ‘dnapars’: csrc/dnapars.c:1685:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1685 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ csrc/dnapars.c: At top level: csrc/dnapars.c:112:17: warning: ‘names’ defined but not used [-Wunused-variable] 112 | static boolean *names; | ^~~~~ csrc/dnapars.c:108:16: warning: ‘nothing’ defined but not used [-Wunused-variable] 108 | static baseptr nothing; | ^~~~~~~ csrc/dnapars.c:81:6: warning: ‘weightfilename’ defined but not used [-Wunused-variable] 81 | weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/dnapars.c:80:58: warning: ‘intreename’ defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ csrc/dnapars.c:80:35: warning: ‘outfilename’ defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~~ csrc/dnapars.c:80:13: warning: ‘infilename’ defined but not used [-Wunused-variable] 80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, | ^~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/protpars.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/seq.c csrc/protpars.c: In function ‘protpars’: csrc/protpars.c:2097:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2097 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ csrc/protpars.c: At top level: csrc/protpars.c:129:12: warning: ‘tmpa’ defined but not used [-Wunused-variable] 129 | static aas tmpa; | ^~~~ csrc/protpars.c:111:21: warning: ‘inseed0’ defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~~ csrc/protpars.c:111:13: warning: ‘inseed’ defined but not used [-Wunused-variable] 111 | static long inseed, inseed0; | ^~~~~~ csrc/protpars.c:107:94: warning: ‘weightfilename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~~~~ csrc/protpars.c:107:58: warning: ‘intreename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ csrc/protpars.c:107:35: warning: ‘outfilename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~~ csrc/protpars.c:107:13: warning: ‘infilename’ defined but not used [-Wunused-variable] 107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH]; | ^~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phylip.c csrc/seq.c: In function ‘collapsetree’: csrc/seq.c:4015:11: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 4015 | long i, j, index, index2, numd; | ^ csrc/phylip.c: In function ‘scan_eoln’: csrc/phylip.c:161:8: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable] 161 | char ch; | ^~ csrc/phylip.c: In function ‘stringnames_new’: csrc/phylip.c:2980:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 2980 | long len, i; | ^~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/lwl.c gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/bionj.c csrc/lwl.c: In function ‘prefastlwl’: csrc/lwl.c:412:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 412 | else | ^~~~ csrc/lwl.c:414:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 414 | aa[9] = 14;/* agc S */ | ^~ csrc/lwl.c:417:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 417 | else | ^~~~ csrc/lwl.c:419:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 419 | aa[11] = 14;/* agt S */ | ^~ csrc/lwl.c:422:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 422 | else | ^~~~ csrc/lwl.c:424:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 424 | aa[13] = 7;/* atc I */ | ^~ csrc/lwl.c:469:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 469 | else | ^~~~ csrc/lwl.c:471:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 471 | aa[57] = 10;/* tgc */ | ^~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function ‘Warn_And_Exit’: csrc/phyml_util.c:47:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ g++ -o seaview -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz treedraw.cxx:42:16: warning: type ‘struct branche’ violates the C++ One Definition Rule [-Wodr] 42 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:17:16: note: a different type is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:21:14: note: the first difference of corresponding definitions is field ‘bits’ 21 | int *bits; | ^ addbootstrap.cxx:17:16: note: a type with different number of fields is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ use_mase_files.cxx:115:12: warning: ‘isarg’ violates the C++ One Definition Rule [-Wodr] 115 | extern int isarg(int argc, char *argv[], const char *arg); | ^ treedraw.cxx:3368:6: note: return value type mismatch 3368 | bool isarg(int argc, char *argv[], const char *arg) | ^ treedraw.cxx:3368:6: note: type ‘bool’ should match type ‘int’ treedraw.cxx:3368:6: note: ‘isarg’ was previously declared here treedraw.cxx:3368:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used In function ‘show_dot_plot’, inlined from ‘edit_menu_callback’ at seaview.cxx:2557:15: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘_817->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ^ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘_817->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ^ In function ‘really_close’, inlined from ‘exit_button_proc’ at xfmatpt.cxx:898:18: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ^ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.uq2BPw + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + '[' /builddir/build/BUILD/seaview-5.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/seaview-5.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/seaview-5.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.0-build + mkdir /builddir/build/BUILD/seaview-5.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + rm -rf /builddir/build/BUILD/seaview-5.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/seaview + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/bin + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT//usr/share/man/man1 + install -m 755 seaview /builddir/build/BUILD/seaview-5.0-build/BUILDROOT//usr/bin + desktop-file-install --dir /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/applications /builddir/build/SOURCES/seaview.desktop + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/pixmaps/seaview.xpm + install -m 0644 -p seaview.svg /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/pixmaps/seaview.svg + mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/appdata/ + install -m 0644 -p seaview.appdata.xml /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/appdata/seaview.appdata.xml + install -m 644 seaview.1 /builddir/build/BUILD/seaview-5.0-build/BUILDROOT//usr/share/man/man1 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.0-11.fc42 --unique-debug-suffix -5.0-11.fc42.aarch64 --unique-debug-src-base seaview-5.0-11.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seaview-5.0-build/seaview find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/seaview-5.0-11.fc42.aarch64 3338 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/seaview-5.0-build/BUILDROOT Scanned 19 directories and 62 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/seaview-5.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Sd7yA2 + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + RPM_EC=0 ++ jobs -p + exit 0 Processing files: seaview-5.0-11.fc42.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GF69um + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + cd seaview + DOCDIR=/builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.0-build/seaview/seaview.1.xml /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.0-build/seaview/seaview.html /builddir/build/BUILD/seaview-5.0-build/BUILDROOT/usr/share/doc/seaview + RPM_EC=0 ++ jobs -p + exit 0 Provides: application() application(seaview.desktop) metainfo() metainfo(seaview.appdata.xml) seaview = 5.0-11.fc42 seaview(aarch-64) = 5.0-11.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfltk.so.1.3()(64bit) libfltk_images.so.1.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: seaview-debugsource-5.0-11.fc42.aarch64 Provides: seaview-debugsource = 5.0-11.fc42 seaview-debugsource(aarch-64) = 5.0-11.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seaview-debuginfo-5.0-11.fc42.aarch64 Provides: debuginfo(build-id) = 1bade7f16596c05f7c66fa18995e1ee731a906f2 seaview-debuginfo = 5.0-11.fc42 seaview-debuginfo(aarch-64) = 5.0-11.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seaview-debugsource(aarch-64) = 5.0-11.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/seaview-5.0-build/BUILDROOT Wrote: /builddir/build/RPMS/seaview-5.0-11.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/seaview-debugsource-5.0-11.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/seaview-debuginfo-5.0-11.fc42.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.EUiDQz + umask 022 + cd /builddir/build/BUILD/seaview-5.0-build + test -d /builddir/build/BUILD/seaview-5.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/seaview-5.0-build + rm -rf /builddir/build/BUILD/seaview-5.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild seaview-5.0-11.fc42.src.rpm Finish: build phase for seaview-5.0-11.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1727359146.837508/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/seaview-5.0-11.fc42.src.rpm) Config(child) 0 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "seaview", "epoch": null, "version": "5.0", "release": "11.fc42", "arch": "aarch64" }, { "name": "seaview-debuginfo", "epoch": null, "version": "5.0", "release": "11.fc42", "arch": "aarch64" }, { "name": "seaview-debugsource", "epoch": null, "version": "5.0", "release": "11.fc42", "arch": "aarch64" }, { "name": "seaview", "epoch": null, "version": "5.0", "release": "11.fc42", "arch": "src" } ] } RPMResults finished