Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c294' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8069455-fedora-rawhide-ppc64le --chroot fedora-rawhide-ppc64le


Version: 0.73
PID: 7217
Logging PID: 7218
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 8069455,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '5e8f7a6461ef08091b670726100a86d9720b3c37',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.15.1-10',
 'project_dirname': 'zlib-ng-rebase-fedora',
 'project_name': 'zlib-ng-rebase-fedora',
 'project_owner': 'ljavorsk',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ljavorsk/zlib-ng-rebase-fedora/fedora-rawhide-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ljavorsk/zlib-ng-rebase-fedora--ljavorsk',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'ljavorsk',
 'tags': [],
 'task_id': '8069455-fedora-rawhide-ppc64le',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/bcftools /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools'...

Running: git checkout 5e8f7a6461ef08091b670726100a86d9720b3c37 --

cmd: ['git', 'checkout', '5e8f7a6461ef08091b670726100a86d9720b3c37', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools
rc: 0
stdout: 
stderr: Note: switching to '5e8f7a6461ef08091b670726100a86d9720b3c37'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5e8f7a6 automatic import of bcftools

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.15.1.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o bcftools-1.15.1.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ljavorsk/zlib-ng-rebase-fedora/bcftools/bcftools-1.15.1.tar.bz2/md5/37e0cbdbcbeb844b8592f4a2acb2fe3f/bcftools-1.15.1.tar.bz2
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 6755k  100 6755k    0     0  20.6M      0 --:--:-- --:--:-- --:--:-- 20.6M
INFO: Reading stdout from command: md5sum bcftools-1.15.1.tar.bz2

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727281667.714033 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727281667.714033 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools/bcftools.spec)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1727281667.714033/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1727281667.714033/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/1f11112e6f77e4ec988ce81a879ac167746e21fa92fbebd4a91236f33e67d273/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/1f11112e6f77e4ec988ce81a879ac167746e21fa92fbebd4a91236f33e67d273/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1727281667.714033/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.94-1.fc42.ppc64le
  rpm-sequoia-1.7.0-2.fc41.ppc64le
  dnf5-5.2.6.2-1.fc42.ppc64le
  dnf5-plugins-5.2.6.2-1.fc42.ppc64le
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |   8.9 MiB/s |  20.1 MiB |  00m02s
 Copr repository                        100% |   3.8 MiB/s | 569.2 KiB |  00m00s
Repositories loaded.
Package                            Arch    Version                    Repository      Size
Installing group/module packages:
 bash                              ppc64le 5.2.32-2.fc42              fedora       8.7 MiB
 bzip2                             ppc64le 1.0.8-19.fc41              fedora     427.5 KiB
 coreutils                         ppc64le 9.5-9.fc42                 fedora      21.4 MiB
 cpio                              ppc64le 2.15-2.fc41                fedora       1.2 MiB
 diffutils                         ppc64le 3.10-8.fc41                fedora       2.2 MiB
 fedora-release-common             noarch  42-0.3                     fedora      19.4 KiB
 findutils                         ppc64le 1:4.10.0-4.fc41            fedora       2.2 MiB
 gawk                              ppc64le 5.3.0-4.fc41               fedora       4.5 MiB
 glibc-minimal-langpack            ppc64le 2.40.9000-1.fc42           fedora       0.0   B
 grep                              ppc64le 3.11-9.fc41                fedora       1.2 MiB
 gzip                              ppc64le 1.13-2.fc41                fedora     552.8 KiB
 info                              ppc64le 7.1.1-1.fc42               fedora     741.5 KiB
 patch                             ppc64le 2.7.6-25.fc41              fedora     390.5 KiB
 redhat-rpm-config                 noarch  295-1.fc42                 fedora     186.6 KiB
 rpm-build                         ppc64le 4.19.94-1.fc42             fedora       1.4 MiB
 sed                               ppc64le 4.9-3.fc41                 fedora       1.0 MiB
 shadow-utils                      ppc64le 2:4.16.0-4.fc42            fedora       7.3 MiB
 tar                               ppc64le 2:1.35-4.fc41              fedora       3.2 MiB
 unzip                             ppc64le 6.0-64.fc41                fedora     854.4 KiB
 util-linux                        ppc64le 2.40.2-8.fc42              fedora      17.2 MiB
 which                             ppc64le 2.21-42.fc41               fedora     248.0 KiB
 xz                                ppc64le 1:5.6.2-2.fc41             fedora       1.5 MiB
Installing dependencies:
 add-determinism                   ppc64le 0.3.6-1.fc41               fedora       2.4 MiB
 alternatives                      ppc64le 1.30-1.fc41                fedora     218.2 KiB
 ansible-srpm-macros               noarch  1-16.fc41                  fedora      35.7 KiB
 audit-libs                        ppc64le 4.0.2-1.fc41               fedora     675.2 KiB
 authselect                        ppc64le 1.5.0-7.fc41               fedora     309.4 KiB
 authselect-libs                   ppc64le 1.5.0-7.fc41               fedora     931.7 KiB
 basesystem                        noarch  11-21.fc41                 fedora       0.0   B
 binutils                          ppc64le 2.43.50-1.fc42             copr_base   33.1 MiB
 build-reproducibility-srpm-macros noarch  0.3.6-1.fc41               fedora     735.0   B
 bzip2-libs                        ppc64le 1.0.8-19.fc41              fedora     200.6 KiB
 ca-certificates                   noarch  2024.2.69_v8.0.401-1.fc42  fedora       2.6 MiB
 coreutils-common                  ppc64le 9.5-9.fc42                 fedora      11.2 MiB
 cracklib                          ppc64le 2.9.11-6.fc41              fedora     934.2 KiB
 crypto-policies                   noarch  20240828-1.git5f66e81.fc42 fedora     136.9 KiB
 curl                              ppc64le 8.10.1-1.fc42              fedora     581.3 KiB
 cyrus-sasl-lib                    ppc64le 2.1.28-27.fc41             fedora       3.5 MiB
 debugedit                         ppc64le 5.0-17.fc41                fedora     499.1 KiB
 dwz                               ppc64le 0.15-7.fc41                fedora     450.8 KiB
 ed                                ppc64le 1.20.2-2.fc41              fedora     282.8 KiB
 efi-srpm-macros                   noarch  5-12.fc41                  fedora      40.1 KiB
 elfutils                          ppc64le 0.191-8.fc41               fedora       5.3 MiB
 elfutils-debuginfod-client        ppc64le 0.191-8.fc41               fedora     396.5 KiB
 elfutils-default-yama-scope       noarch  0.191-8.fc41               fedora       1.8 KiB
 elfutils-libelf                   ppc64le 0.191-8.fc41               fedora       1.3 MiB
 elfutils-libs                     ppc64le 0.191-8.fc41               fedora       1.0 MiB
 fedora-gpg-keys                   noarch  42-0.2                     fedora     126.4 KiB
 fedora-release                    noarch  42-0.3                     fedora       0.0   B
 fedora-release-identity-basic     noarch  42-0.3                     fedora     694.0   B
 fedora-repos                      noarch  42-0.2                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  42-0.2                     fedora       2.2 KiB
 file                              ppc64le 5.45-7.fc41                fedora     267.4 KiB
 file-libs                         ppc64le 5.45-7.fc41                fedora      10.1 MiB
 filesystem                        ppc64le 3.18-29.fc42               fedora     106.0   B
 fonts-srpm-macros                 noarch  1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch  0.3.2-1.fc41               fedora      39.0 KiB
 fpc-srpm-macros                   noarch  1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       ppc64le 15.1-2.fc42                fedora      15.5 MiB
 gdbm                              ppc64le 1:1.23-7.fc41              fedora     928.3 KiB
 gdbm-libs                         ppc64le 1:1.23-7.fc41              fedora     425.5 KiB
 ghc-srpm-macros                   noarch  1.9.2-1.fc42               fedora     779.0   B
 glibc                             ppc64le 2.40.9000-1.fc42           fedora      14.8 MiB
 glibc-common                      ppc64le 2.40.9000-1.fc42           fedora       2.6 MiB
 glibc-gconv-extra                 ppc64le 2.40.9000-1.fc42           fedora      49.1 MiB
 gmp                               ppc64le 1:6.3.0-2.fc41             fedora     850.3 KiB
 gnat-srpm-macros                  noarch  6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch  3.6.0-3.fc41               fedora      60.8 KiB
 jansson                           ppc64le 2.13.1-10.fc41             fedora     220.3 KiB
 kernel-srpm-macros                noarch  1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     ppc64le 1.6.3-4.fc41               fedora     226.1 KiB
 krb5-libs                         ppc64le 1.21.3-2.fc41              fedora       3.8 MiB
 libacl                            ppc64le 2.3.2-2.fc41               fedora     195.7 KiB
 libarchive                        ppc64le 3.7.4-3.fc42               fedora       1.4 MiB
 libattr                           ppc64le 2.5.2-4.fc41               fedora     196.3 KiB
 libblkid                          ppc64le 2.40.2-8.fc42              fedora     482.6 KiB
 libbrotli                         ppc64le 1.1.0-5.fc41               fedora       1.3 MiB
 libcap                            ppc64le 2.70-4.fc41                fedora       1.4 MiB
 libcap-ng                         ppc64le 0.8.5-3.fc41               fedora     416.5 KiB
 libcom_err                        ppc64le 1.47.1-3.fc41              fedora     239.1 KiB
 libcurl                           ppc64le 8.10.1-1.fc42              fedora       1.1 MiB
 libeconf                          ppc64le 0.6.2-3.fc41               fedora     206.0 KiB
 libevent                          ppc64le 2.1.12-14.fc41             fedora       1.6 MiB
 libfdisk                          ppc64le 2.40.2-8.fc42              fedora     611.0 KiB
 libffi                            ppc64le 3.4.6-3.fc42               fedora     218.0 KiB
 libgcc                            ppc64le 14.2.1-3.fc42              fedora     350.4 KiB
 libgomp                           ppc64le 14.2.1-3.fc42              fedora     695.4 KiB
 libidn2                           ppc64le 2.3.7-2.fc41               fedora     456.8 KiB
 libmount                          ppc64le 2.40.2-8.fc42              fedora     548.0 KiB
 libnghttp2                        ppc64le 1.63.0-1.fc42              fedora     326.1 KiB
 libnsl2                           ppc64le 2.0.1-2.fc41               fedora     221.8 KiB
 libpkgconf                        ppc64le 2.3.0-1.fc42               fedora     198.0 KiB
 libpsl                            ppc64le 0.21.5-4.fc41              fedora     196.2 KiB
 libpwquality                      ppc64le 1.4.5-11.fc41              fedora       1.1 MiB
 librtas                           ppc64le 2.0.6-2.fc41               fedora     497.6 KiB
 libselinux                        ppc64le 3.7-6.fc42                 fedora     329.0 KiB
 libsemanage                       ppc64le 3.7-3.fc42                 fedora     489.5 KiB
 libsepol                          ppc64le 3.7-3.fc42                 fedora       1.2 MiB
 libsmartcols                      ppc64le 2.40.2-8.fc42              fedora     353.5 KiB
 libssh                            ppc64le 0.11.1-1.fc42              fedora     777.7 KiB
 libssh-config                     noarch  0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         ppc64le 14.2.1-3.fc42              fedora       3.9 MiB
 libtasn1                          ppc64le 4.19.0-9.fc41              fedora     347.4 KiB
 libtirpc                          ppc64le 1.3.5-0.fc41               fedora     402.7 KiB
 libtool-ltdl                      ppc64le 2.4.7-12.fc41              fedora     222.1 KiB
 libunistring                      ppc64le 1.1-8.fc41                 fedora       1.9 MiB
 libuuid                           ppc64le 2.40.2-8.fc42              fedora     197.4 KiB
 libverto                          ppc64le 0.3.2-9.fc41               fedora     197.2 KiB
 libxcrypt                         ppc64le 4.4.36-7.fc41              fedora     398.6 KiB
 libxml2                           ppc64le 2.12.8-2.fc41              fedora       2.5 MiB
 libzstd                           ppc64le 1.5.6-2.fc41               fedora     988.0 KiB
 lua-libs                          ppc64le 5.4.6-6.fc41               fedora     456.9 KiB
 lua-srpm-macros                   noarch  1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          ppc64le 1.10.0-1.fc41              fedora     325.2 KiB
 mpfr                              ppc64le 4.2.1-5.fc41               fedora     976.9 KiB
 ncurses-base                      noarch  6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      ppc64le 6.5-2.20240629.fc41        fedora       2.4 MiB
 ocaml-srpm-macros                 noarch  10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  2-18.fc41                  fedora     112.0   B
 openldap                          ppc64le 2.6.8-5.fc41               fedora       1.1 MiB
 openssl-libs                      ppc64le 1:3.2.2-8.fc42             fedora       8.6 MiB
 p11-kit                           ppc64le 0.25.5-3.fc41              fedora       3.1 MiB
 p11-kit-trust                     ppc64le 0.25.5-3.fc41              fedora     655.4 KiB
 package-notes-srpm-macros         noarch  0.5-12.fc41                fedora       1.6 KiB
 pam                               ppc64le 1.6.1-6.fc42               fedora      11.0 MiB
 pam-libs                          ppc64le 1.6.1-6.fc42               fedora     606.5 KiB
 pcre2                             ppc64le 10.44-1.fc41.1             fedora     968.8 KiB
 pcre2-syntax                      noarch  10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch  1-56.fc41                  fedora     861.0   B
 pkgconf                           ppc64le 2.3.0-1.fc42               fedora     240.5 KiB
 pkgconf-m4                        noarch  2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                ppc64le 2.3.0-1.fc42               fedora     990.0   B
 popt                              ppc64le 1.19-7.fc41                fedora     272.8 KiB
 publicsuffix-list-dafsa           noarch  20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch  1.15.0-1.fc42              fedora       1.9 KiB
 python-srpm-macros                noarch  3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch  5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch  6.7.2-3.fc41               fedora     456.0   B
 readline                          ppc64le 8.2-11.fc42                fedora     881.0 KiB
 rpm                               ppc64le 4.19.94-1.fc42             fedora       4.8 MiB
 rpm-build-libs                    ppc64le 4.19.94-1.fc42             fedora     390.6 KiB
 rpm-libs                          ppc64le 4.19.94-1.fc42             fedora       1.2 MiB
 rpm-sequoia                       ppc64le 1.7.0-2.fc41               fedora       2.9 MiB
 rust-srpm-macros                  noarch  26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch  2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       ppc64le 3.46.0-4.fc41              fedora       2.0 MiB
 systemd-libs                      ppc64le 256.5-1.fc42               fedora       3.0 MiB
 util-linux-core                   ppc64le 2.40.2-8.fc42              fedora       6.2 MiB
 xxhash-libs                       ppc64le 0.8.2-3.fc41               fedora     211.9 KiB
 xz-libs                           ppc64le 1:5.6.2-2.fc41             fedora     330.1 KiB
 zig-srpm-macros                   noarch  1-3.fc41                   fedora       1.1 KiB
 zip                               ppc64le 3.0-41.fc41                fedora       1.2 MiB
 zlib-ng-compat                    ppc64le 2.2.2-1.fc42               copr_base  261.6 KiB
 zstd                              ppc64le 1.5.6-2.fc41               fedora       2.1 MiB
Installing groups:
 Buildsystem building group                                                               

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 57 MiB. Need to download 57 MiB.
After this operation, 326 MiB extra will be used (install 326 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.ppc64le 100% | 635.6 KiB/s |  53.4 KiB |  00m00s
[  2/154] cpio-0:2.15-2.fc41.ppc64le    100% |   3.8 MiB/s | 299.5 KiB |  00m00s
[  3/154] coreutils-0:9.5-9.fc42.ppc64l 100% |   6.7 MiB/s |   1.3 MiB |  00m00s
[  4/154] bash-0:5.2.32-2.fc42.ppc64le  100% |   9.3 MiB/s |   1.9 MiB |  00m00s
[  5/154] diffutils-0:3.10-8.fc41.ppc64 100% |   8.7 MiB/s | 417.5 KiB |  00m00s
[  6/154] fedora-release-common-0:42-0. 100% |   1.1 MiB/s |  23.0 KiB |  00m00s
[  7/154] findutils-1:4.10.0-4.fc41.ppc 100% |  20.5 MiB/s | 588.1 KiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.40 100% |   4.7 MiB/s | 120.8 KiB |  00m00s
[  9/154] grep-0:3.11-9.fc41.ppc64le    100% |  12.6 MiB/s | 309.5 KiB |  00m00s
[ 10/154] gawk-0:5.3.0-4.fc41.ppc64le   100% |  21.3 MiB/s |   1.1 MiB |  00m00s
[ 11/154] gzip-0:1.13-2.fc41.ppc64le    100% |   7.4 MiB/s | 174.2 KiB |  00m00s
[ 12/154] info-0:7.1.1-1.fc42.ppc64le   100% |   8.5 MiB/s | 200.8 KiB |  00m00s
[ 13/154] patch-0:2.7.6-25.fc41.ppc64le 100% |   6.3 MiB/s | 142.1 KiB |  00m00s
[ 14/154] redhat-rpm-config-0:295-1.fc4 100% |   3.7 MiB/s |  82.4 KiB |  00m00s
[ 15/154] rpm-build-0:4.19.94-1.fc42.pp 100% |   3.8 MiB/s |  85.2 KiB |  00m00s
[ 16/154] sed-0:4.9-3.fc41.ppc64le      100% |  12.6 MiB/s | 323.2 KiB |  00m00s
[ 17/154] tar-2:1.35-4.fc41.ppc64le     100% |  26.9 MiB/s | 882.9 KiB |  00m00s
[ 18/154] shadow-utils-2:4.16.0-4.fc42. 100% |  24.3 MiB/s |   1.3 MiB |  00m00s
[ 19/154] unzip-0:6.0-64.fc41.ppc64le   100% |   5.8 MiB/s | 191.1 KiB |  00m00s
[ 20/154] util-linux-0:2.40.2-8.fc42.pp 100% |  33.9 MiB/s |   1.3 MiB |  00m00s
[ 21/154] which-0:2.21-42.fc41.ppc64le  100% |   1.3 MiB/s |  42.9 KiB |  00m00s
[ 22/154] xz-1:5.6.2-2.fc41.ppc64le     100% |  14.1 MiB/s | 475.8 KiB |  00m00s
[ 23/154] filesystem-0:3.18-29.fc42.ppc 100% |  27.9 MiB/s |   1.1 MiB |  00m00s
[ 24/154] ncurses-libs-0:6.5-2.20240629 100% |   7.4 MiB/s | 378.3 KiB |  00m00s
[ 25/154] glibc-0:2.40.9000-1.fc42.ppc6 100% |  41.5 MiB/s |   3.3 MiB |  00m00s
[ 26/154] bzip2-libs-0:1.0.8-19.fc41.pp 100% |   1.1 MiB/s |  46.7 KiB |  00m00s
[ 27/154] coreutils-common-0:9.5-9.fc42 100% |  44.2 MiB/s |   2.1 MiB |  00m00s
[ 28/154] gmp-1:6.3.0-2.fc41.ppc64le    100% |  12.6 MiB/s | 309.0 KiB |  00m00s
[ 29/154] libacl-0:2.3.2-2.fc41.ppc64le 100% |   1.1 MiB/s |  27.3 KiB |  00m00s
[ 30/154] libattr-0:2.5.2-4.fc41.ppc64l 100% | 900.3 KiB/s |  18.9 KiB |  00m00s
[ 31/154] libcap-0:2.70-4.fc41.ppc64le  100% |   4.1 MiB/s |  93.4 KiB |  00m00s
[ 32/154] libselinux-0:3.7-6.fc42.ppc64 100% |   4.4 MiB/s | 100.1 KiB |  00m00s
[ 33/154] systemd-libs-0:256.5-1.fc42.p 100% |  15.8 MiB/s | 778.6 KiB |  00m00s
[ 34/154] fedora-repos-0:42-0.2.noarch  100% | 191.0 KiB/s |   9.2 KiB |  00m00s
[ 35/154] openssl-libs-1:3.2.2-8.fc42.p 100% |  38.4 MiB/s |   2.5 MiB |  00m00s
[ 36/154] readline-0:8.2-11.fc42.ppc64l 100% |   9.0 MiB/s | 230.4 KiB |  00m00s
[ 37/154] mpfr-0:4.2.1-5.fc41.ppc64le   100% |  12.4 MiB/s | 354.9 KiB |  00m00s
[ 38/154] glibc-common-0:2.40.9000-1.fc 100% |  15.8 MiB/s | 421.7 KiB |  00m00s
[ 39/154] pcre2-0:10.44-1.fc41.1.ppc64l 100% |  10.3 MiB/s | 251.9 KiB |  00m00s
[ 40/154] ed-0:1.20.2-2.fc41.ppc64le    100% |   3.6 MiB/s |  84.7 KiB |  00m00s
[ 41/154] ansible-srpm-macros-0:1-16.fc 100% | 989.3 KiB/s |  20.8 KiB |  00m00s
[ 42/154] build-reproducibility-srpm-ma 100% | 504.9 KiB/s |  10.6 KiB |  00m00s
[ 43/154] dwz-0:0.15-7.fc41.ppc64le     100% |   6.4 MiB/s | 143.5 KiB |  00m00s
[ 44/154] efi-srpm-macros-0:5-12.fc41.n 100% |   1.0 MiB/s |  22.4 KiB |  00m00s
[ 45/154] file-0:5.45-7.fc41.ppc64le    100% |   2.3 MiB/s |  49.9 KiB |  00m00s
[ 46/154] fonts-srpm-macros-1:2.0.5-17. 100% |   1.3 MiB/s |  27.0 KiB |  00m00s
[ 47/154] forge-srpm-macros-0:0.3.2-1.f 100% | 938.2 KiB/s |  19.7 KiB |  00m00s
[ 48/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 379.1 KiB/s |   8.0 KiB |  00m00s
[ 49/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 455.9 KiB/s |   9.1 KiB |  00m00s
[ 50/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 288.8 KiB/s |   9.0 KiB |  00m00s
[ 51/154] go-srpm-macros-0:3.6.0-3.fc41 100% |   1.3 MiB/s |  28.0 KiB |  00m00s
[ 52/154] kernel-srpm-macros-0:1.0-24.f 100% | 429.0 KiB/s |   9.9 KiB |  00m00s
[ 53/154] lua-srpm-macros-0:1-14.fc41.n 100% | 422.8 KiB/s |   8.9 KiB |  00m00s
[ 54/154] ocaml-srpm-macros-0:10-3.fc41 100% | 438.1 KiB/s |   9.2 KiB |  00m00s
[ 55/154] openblas-srpm-macros-0:2-18.f 100% | 367.4 KiB/s |   7.7 KiB |  00m00s
[ 56/154] package-notes-srpm-macros-0:0 100% | 468.1 KiB/s |   9.8 KiB |  00m00s
[ 57/154] perl-srpm-macros-0:1-56.fc41. 100% | 405.4 KiB/s |   8.5 KiB |  00m00s
[ 58/154] pyproject-srpm-macros-0:1.15. 100% | 645.2 KiB/s |  13.5 KiB |  00m00s
[ 59/154] python-srpm-macros-0:3.13-3.f 100% |   1.1 MiB/s |  23.7 KiB |  00m00s
[ 60/154] qt5-srpm-macros-0:5.15.15-1.f 100% | 444.9 KiB/s |   8.9 KiB |  00m00s
[ 61/154] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 434.6 KiB/s |   9.1 KiB |  00m00s
[ 62/154] rpm-0:4.19.94-1.fc42.ppc64le  100% |  18.6 MiB/s | 550.9 KiB |  00m00s
[ 63/154] rust-srpm-macros-0:26.3-3.fc4 100% | 432.1 KiB/s |  12.1 KiB |  00m00s
[ 64/154] zig-srpm-macros-0:1-3.fc41.no 100% | 338.5 KiB/s |   8.1 KiB |  00m00s
[ 65/154] zip-0:3.0-41.fc41.ppc64le     100% |  10.7 MiB/s | 274.1 KiB |  00m00s
[ 66/154] debugedit-0:5.0-17.fc41.ppc64 100% |   3.1 MiB/s |  82.0 KiB |  00m00s
[ 67/154] elfutils-0:0.191-8.fc41.ppc64 100% |  17.1 MiB/s | 561.5 KiB |  00m00s
[ 68/154] elfutils-libelf-0:0.191-8.fc4 100% |   8.8 MiB/s | 216.7 KiB |  00m00s
[ 69/154] pkgconf-pkg-config-0:2.3.0-1. 100% | 473.2 KiB/s |   9.9 KiB |  00m00s
[ 70/154] popt-0:1.19-7.fc41.ppc64le    100% |   3.1 MiB/s |  70.4 KiB |  00m00s
[ 71/154] rpm-build-libs-0:4.19.94-1.fc 100% |   2.4 MiB/s | 107.4 KiB |  00m00s
[ 72/154] rpm-libs-0:4.19.94-1.fc42.ppc 100% |  13.3 MiB/s | 353.8 KiB |  00m00s
[ 73/154] zstd-0:1.5.6-2.fc41.ppc64le   100% |  16.4 MiB/s | 504.1 KiB |  00m00s
[ 74/154] audit-libs-0:4.0.2-1.fc41.ppc 100% |   6.1 MiB/s | 142.5 KiB |  00m00s
[ 75/154] libeconf-0:0.6.2-3.fc41.ppc64 100% |   1.7 MiB/s |  36.2 KiB |  00m00s
[ 76/154] libsemanage-0:3.7-3.fc42.ppc6 100% |   5.5 MiB/s | 128.8 KiB |  00m00s
[ 77/154] libxcrypt-0:4.4.36-7.fc41.ppc 100% |   5.8 MiB/s | 130.3 KiB |  00m00s
[ 78/154] pam-libs-0:1.6.1-6.fc42.ppc64 100% |   2.8 MiB/s |  63.3 KiB |  00m00s
[ 79/154] setup-0:2.15.0-5.fc41.noarch  100% |   6.6 MiB/s | 154.4 KiB |  00m00s
[ 80/154] authselect-libs-0:1.5.0-7.fc4 100% |   9.1 MiB/s | 222.7 KiB |  00m00s
[ 81/154] libblkid-0:2.40.2-8.fc42.ppc6 100% |   6.3 MiB/s | 141.6 KiB |  00m00s
[ 82/154] libcap-ng-0:0.8.5-3.fc41.ppc6 100% |   1.6 MiB/s |  33.7 KiB |  00m00s
[ 83/154] libfdisk-0:2.40.2-8.fc42.ppc6 100% |   7.5 MiB/s | 175.7 KiB |  00m00s
[ 84/154] libmount-0:2.40.2-8.fc42.ppc6 100% |   7.5 MiB/s | 177.8 KiB |  00m00s
[ 85/154] librtas-0:2.0.6-2.fc41.ppc64l 100% |   3.6 MiB/s |  81.3 KiB |  00m00s
[ 86/154] libsmartcols-0:2.40.2-8.fc42. 100% |   4.9 MiB/s | 109.9 KiB |  00m00s
[ 87/154] libuuid-0:2.40.2-8.fc42.ppc64 100% |   1.4 MiB/s |  30.5 KiB |  00m00s
[ 88/154] pam-0:1.6.1-6.fc42.ppc64le    100% |  19.5 MiB/s | 598.9 KiB |  00m00s
[ 89/154] util-linux-core-0:2.40.2-8.fc 100% |  16.7 MiB/s | 580.8 KiB |  00m00s
[ 90/154] xz-libs-1:5.6.2-2.fc41.ppc64l 100% |   5.5 MiB/s | 124.8 KiB |  00m00s
[ 91/154] glibc-gconv-extra-0:2.40.9000 100% |  39.9 MiB/s |   2.0 MiB |  00m00s
[ 92/154] basesystem-0:11-21.fc41.noarc 100% | 223.4 KiB/s |   7.4 KiB |  00m00s
[ 93/154] libgcc-0:14.2.1-3.fc42.ppc64l 100% |   5.0 MiB/s | 113.3 KiB |  00m00s
[ 94/154] ncurses-base-0:6.5-2.20240629 100% |   3.8 MiB/s |  88.4 KiB |  00m00s
[ 95/154] libsepol-0:3.7-3.fc42.ppc64le 100% |  14.0 MiB/s | 373.6 KiB |  00m00s
[ 96/154] ca-certificates-0:2024.2.69_v 100% |  26.3 MiB/s | 944.3 KiB |  00m00s
[ 97/154] crypto-policies-0:20240828-1. 100% |   4.2 MiB/s |  94.6 KiB |  00m00s
[ 98/154] fedora-gpg-keys-0:42-0.2.noar 100% |   5.9 MiB/s | 133.6 KiB |  00m00s
[ 99/154] fedora-repos-rawhide-0:42-0.2 100% | 416.2 KiB/s |   8.7 KiB |  00m00s
[100/154] pcre2-syntax-0:10.44-1.fc41.1 100% |   6.7 MiB/s | 149.9 KiB |  00m00s
[101/154] add-determinism-0:0.3.6-1.fc4 100% |  26.7 MiB/s | 873.8 KiB |  00m00s
[102/154] file-libs-0:5.45-7.fc41.ppc64 100% |  25.2 MiB/s | 774.4 KiB |  00m00s
[103/154] curl-0:8.10.1-1.fc42.ppc64le  100% |   9.6 MiB/s | 225.5 KiB |  00m00s
[104/154] elfutils-libs-0:0.191-8.fc41. 100% |   9.0 MiB/s | 295.3 KiB |  00m00s
[105/154] elfutils-debuginfod-client-0: 100% |   1.8 MiB/s |  39.0 KiB |  00m00s
[106/154] libstdc++-0:14.2.1-3.fc42.ppc 100% |  29.5 MiB/s |   1.0 MiB |  00m00s
[107/154] libzstd-0:1.5.6-2.fc41.ppc64l 100% |   9.7 MiB/s | 336.8 KiB |  00m00s
[108/154] libxml2-0:2.12.8-2.fc41.ppc64 100% |  24.2 MiB/s | 767.3 KiB |  00m00s
[109/154] lz4-libs-0:1.10.0-1.fc41.ppc6 100% |   3.2 MiB/s |  97.7 KiB |  00m00s
[110/154] pkgconf-0:2.3.0-1.fc42.ppc64l 100% |   2.1 MiB/s |  45.9 KiB |  00m00s
[111/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 682.0 KiB/s |  14.3 KiB |  00m00s
[112/154] libgomp-0:14.2.1-3.fc42.ppc64 100% |  14.4 MiB/s | 367.4 KiB |  00m00s
[113/154] lua-libs-0:5.4.6-6.fc41.ppc64 100% |   5.6 MiB/s | 148.1 KiB |  00m00s
[114/154] rpm-sequoia-0:1.7.0-2.fc41.pp 100% |  28.2 MiB/s | 981.0 KiB |  00m00s
[115/154] sqlite-libs-0:3.46.0-4.fc41.p 100% |  20.1 MiB/s | 823.1 KiB |  00m00s
[116/154] authselect-0:1.5.0-7.fc41.ppc 100% |   6.5 MiB/s | 146.9 KiB |  00m00s
[117/154] gdbm-1:1.23-7.fc41.ppc64le    100% |   6.7 MiB/s | 158.9 KiB |  00m00s
[118/154] gdbm-libs-1:1.23-7.fc41.ppc64 100% |   2.9 MiB/s |  61.7 KiB |  00m00s
[119/154] libnsl2-0:2.0.1-2.fc41.ppc64l 100% |   1.5 MiB/s |  31.8 KiB |  00m00s
[120/154] libarchive-0:3.7.4-3.fc42.ppc 100% | 658.7 KiB/s | 476.2 KiB |  00m01s
>>> Status code: 404 for http://download-ib01.fedoraproject.org/pub/fedora-secon
>>> Status code: 404 for https://download-ib01.fedoraproject.org/pub/fedora-seco
>>> Status code: 404 for http://mirrors.rit.edu/fedora/fedora-secondary/developm
[121/154] libpwquality-0:1.4.5-11.fc41. 100% |   5.4 MiB/s | 122.3 KiB |  00m00s
[122/154] libtirpc-0:1.3.5-0.fc41.ppc64 100% |   4.8 MiB/s | 108.8 KiB |  00m00s
[123/154] libffi-0:3.4.6-3.fc42.ppc64le 100% |   1.8 MiB/s |  38.2 KiB |  00m00s
[124/154] p11-kit-0:0.25.5-3.fc41.ppc64 100% |  17.9 MiB/s | 496.0 KiB |  00m00s
[125/154] p11-kit-trust-0:0.25.5-3.fc41 100% |   6.6 MiB/s | 148.4 KiB |  00m00s
[126/154] elfutils-default-yama-scope-0 100% | 615.2 KiB/s |  12.3 KiB |  00m00s
[127/154] libpkgconf-0:2.3.0-1.fc42.ppc 100% |   2.0 MiB/s |  42.9 KiB |  00m00s
[128/154] cracklib-0:2.9.11-6.fc41.ppc6 100% |   4.2 MiB/s |  94.1 KiB |  00m00s
[129/154] libcom_err-0:1.47.1-3.fc41.pp 100% |   1.3 MiB/s |  27.0 KiB |  00m00s
[130/154] libtasn1-0:4.19.0-9.fc41.ppc6 100% |   3.7 MiB/s |  79.3 KiB |  00m00s
[131/154] krb5-libs-0:1.21.3-2.fc41.ppc 100% |  16.5 MiB/s | 842.7 KiB |  00m00s
[132/154] alternatives-0:1.30-1.fc41.pp 100% |   2.1 MiB/s |  44.8 KiB |  00m00s
[133/154] keyutils-libs-0:1.6.3-4.fc41. 100% |   1.5 MiB/s |  32.8 KiB |  00m00s
[134/154] libverto-0:0.3.2-9.fc41.ppc64 100% |   1.0 MiB/s |  22.2 KiB |  00m00s
[135/154] jansson-0:2.13.1-10.fc41.ppc6 100% |   2.3 MiB/s |  49.9 KiB |  00m00s
[136/154] zlib-ng-compat-0:2.2.2-1.fc42 100% |   1.6 MiB/s |  79.0 KiB |  00m00s
[137/154] fedora-release-0:42-0.3.noarc 100% | 582.3 KiB/s |  12.2 KiB |  00m00s
[138/154] xxhash-libs-0:0.8.2-3.fc41.pp 100% | 791.3 KiB/s |  37.2 KiB |  00m00s
[139/154] fedora-release-identity-basic 100% | 542.3 KiB/s |  13.0 KiB |  00m00s
[140/154] gdb-minimal-0:15.1-2.fc42.ppc 100% |  41.1 MiB/s |   4.5 MiB |  00m00s
[141/154] libcurl-0:8.10.1-1.fc42.ppc64 100% |  11.8 MiB/s | 411.5 KiB |  00m00s
[142/154] libbrotli-0:1.1.0-5.fc41.ppc6 100% |  13.8 MiB/s | 382.0 KiB |  00m00s
[143/154] libidn2-0:2.3.7-2.fc41.ppc64l 100% |   4.5 MiB/s | 121.0 KiB |  00m00s
[144/154] libnghttp2-0:1.63.0-1.fc42.pp 100% |   3.8 MiB/s |  85.8 KiB |  00m00s
[145/154] libpsl-0:0.21.5-4.fc41.ppc64l 100% |   2.9 MiB/s |  65.7 KiB |  00m00s
[146/154] binutils-0:2.43.50-1.fc42.ppc 100% |  27.1 MiB/s |   6.4 MiB |  00m00s
[147/154] libssh-0:0.11.1-1.fc42.ppc64l 100% |   7.8 MiB/s | 263.2 KiB |  00m00s
[148/154] openldap-0:2.6.8-5.fc41.ppc64 100% |   8.5 MiB/s | 288.1 KiB |  00m00s
[149/154] publicsuffix-list-dafsa-0:202 100% |   2.4 MiB/s |  58.3 KiB |  00m00s
[150/154] libssh-config-0:0.11.1-1.fc42 100% | 375.4 KiB/s |   9.4 KiB |  00m00s
[151/154] libunistring-0:1.1-8.fc41.ppc 100% |  18.7 MiB/s | 575.2 KiB |  00m00s
[152/154] libevent-0:2.1.12-14.fc41.ppc 100% |  11.2 MiB/s | 274.8 KiB |  00m00s
[153/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% |  25.4 MiB/s | 883.1 KiB |  00m00s
[154/154] libtool-ltdl-0:2.4.7-12.fc41. 100% |   1.2 MiB/s |  39.7 KiB |  00m00s
--------------------------------------------------------------------------------
[154/154] Total                         100% |  28.7 MiB/s |  57.2 MiB |  00m02s
Running transaction
Importing PGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing PGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing PGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 222.0   B/s | 154.0   B |  00m01s
[  2/156] Prepare transaction           100% |   1.4 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.2.1-3. 100% |  86.0 MiB/s | 352.1 KiB |  00m00s
[  4/156] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0   B |  00m00s
[  5/156] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  6/156] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0   B |  00m00s
[  7/156] Installing fedora-repos-rawhi 100% |   2.4 MiB/s |   2.4 KiB |  00m00s
[  8/156] Installing fedora-gpg-keys-0: 100% |  15.3 MiB/s | 172.2 KiB |  00m00s
[  9/156] Installing fedora-repos-0:42- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |   7.7 MiB/s |  23.7 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  21.5 MiB/s | 726.1 KiB |  00m00s
[ 13/156] Installing filesystem-0:3.18- 100% |   1.3 MiB/s | 212.6 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 15/156] Installing pkgconf-m4-0:2.3.0 100% |  14.5 MiB/s |  14.8 KiB |  00m00s
[ 16/156] Installing pcre2-syntax-0:10. 100% |  62.0 MiB/s | 254.1 KiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  21.5 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 19/156] Installing ncurses-libs-0:6.5 100% |  93.6 MiB/s |   2.4 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[ 20/156] Installing glibc-0:2.40.9000- 100% | 117.3 MiB/s |  14.8 MiB |  00m00s
[ 21/156] Installing bash-0:5.2.32-2.fc 100% | 104.7 MiB/s |   8.7 MiB |  00m00s
[ 22/156] Installing glibc-common-0:2.4 100% | 125.3 MiB/s |   2.6 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[ 23/156] Installing glibc-gconv-extra- 100% | 201.5 MiB/s |  49.2 MiB |  00m00s
[ 24/156] Installing zlib-ng-compat-0:2 100% | 128.1 MiB/s | 262.4 KiB |  00m00s
[ 25/156] Installing bzip2-libs-0:1.0.8 100% |  98.5 MiB/s | 201.8 KiB |  00m00s
[ 26/156] Installing xz-libs-1:5.6.2-2. 100% | 107.8 MiB/s | 331.2 KiB |  00m00s
[ 27/156] Installing readline-0:8.2-11. 100% | 143.7 MiB/s | 883.1 KiB |  00m00s
[ 28/156] Installing popt-0:1.19-7.fc41 100% |  45.5 MiB/s | 279.4 KiB |  00m00s
[ 29/156] Installing libuuid-0:2.40.2-8 100% |  96.9 MiB/s | 198.5 KiB |  00m00s
[ 30/156] Installing libblkid-0:2.40.2- 100% | 157.5 MiB/s | 483.8 KiB |  00m00s
[ 31/156] Installing gmp-1:6.3.0-2.fc41 100% | 138.8 MiB/s | 852.5 KiB |  00m00s
[ 32/156] Installing libattr-0:2.5.2-4. 100% |  96.3 MiB/s | 197.2 KiB |  00m00s
[ 33/156] Installing libacl-0:2.3.2-2.f 100% | 192.0 MiB/s | 196.6 KiB |  00m00s
[ 34/156] Installing libxcrypt-0:4.4.36 100% |  98.0 MiB/s | 401.3 KiB |  00m00s
[ 35/156] Installing libstdc++-0:14.2.1 100% | 156.3 MiB/s |   3.9 MiB |  00m00s
[ 36/156] Installing libzstd-0:1.5.6-2. 100% | 120.8 MiB/s | 989.2 KiB |  00m00s
[ 37/156] Installing elfutils-libelf-0: 100% | 101.0 MiB/s |   1.3 MiB |  00m00s
[ 38/156] Installing libeconf-0:0.6.2-3 100% | 101.4 MiB/s | 207.6 KiB |  00m00s
[ 39/156] Installing gdbm-libs-1:1.23-7 100% | 139.1 MiB/s | 427.2 KiB |  00m00s
[ 40/156] Installing dwz-0:0.15-7.fc41. 100% | 110.4 MiB/s | 452.2 KiB |  00m00s
[ 41/156] Installing mpfr-0:4.2.1-5.fc4 100% | 119.5 MiB/s | 978.6 KiB |  00m00s
[ 42/156] Installing gawk-0:5.3.0-4.fc4 100% | 161.2 MiB/s |   4.5 MiB |  00m00s
[ 43/156] Installing unzip-0:6.0-64.fc4 100% | 139.6 MiB/s | 858.0 KiB |  00m00s
[ 44/156] Installing file-libs-0:5.45-7 100% | 219.3 MiB/s |  10.1 MiB |  00m00s
[ 45/156] Installing file-0:5.45-7.fc41 100% |  37.5 MiB/s | 268.9 KiB |  00m00s
[ 46/156] Installing crypto-policies-0: 100% |   9.4 MiB/s | 163.2 KiB |  00m00s
[ 47/156] Installing pcre2-0:10.44-1.fc 100% |  94.8 MiB/s | 970.3 KiB |  00m00s
[ 48/156] Installing grep-0:3.11-9.fc41 100% |  82.8 MiB/s |   1.2 MiB |  00m00s
[ 49/156] Installing xz-1:5.6.2-2.fc41. 100% |  87.2 MiB/s |   1.5 MiB |  00m00s
[ 50/156] Installing libcap-ng-0:0.8.5- 100% | 136.2 MiB/s | 418.4 KiB |  00m00s
[ 51/156] Installing audit-libs-0:4.0.2 100% | 132.3 MiB/s | 677.3 KiB |  00m00s
[ 52/156] Installing pam-libs-0:1.6.1-6 100% | 148.6 MiB/s | 608.8 KiB |  00m00s
[ 53/156] Installing libcap-0:2.70-4.fc 100% | 137.5 MiB/s |   1.4 MiB |  00m00s
[ 54/156] Installing systemd-libs-0:256 100% | 151.0 MiB/s |   3.0 MiB |  00m00s
[ 55/156] Installing libsmartcols-0:2.4 100% | 115.4 MiB/s | 354.6 KiB |  00m00s
[ 56/156] Installing libsepol-0:3.7-3.f 100% | 106.1 MiB/s |   1.2 MiB |  00m00s
[ 57/156] Installing libselinux-0:3.7-6 100% | 107.5 MiB/s | 330.3 KiB |  00m00s
[ 58/156] Installing sed-0:4.9-3.fc41.p 100% |  54.8 MiB/s |   1.0 MiB |  00m00s
[ 59/156] Installing findutils-1:4.10.0 100% |  94.4 MiB/s |   2.2 MiB |  00m00s
[ 60/156] Installing libmount-0:2.40.2- 100% | 134.1 MiB/s | 549.1 KiB |  00m00s
[ 61/156] Installing lz4-libs-0:1.10.0- 100% | 106.2 MiB/s | 326.3 KiB |  00m00s
[ 62/156] Installing lua-libs-0:5.4.6-6 100% | 111.8 MiB/s | 458.1 KiB |  00m00s
[ 63/156] Installing libffi-0:3.4.6-3.f 100% | 107.1 MiB/s | 219.4 KiB |  00m00s
[ 64/156] Installing libcom_err-0:1.47. 100% | 117.3 MiB/s | 240.2 KiB |  00m00s
[ 65/156] Installing libtasn1-0:4.19.0- 100% |  85.3 MiB/s | 349.2 KiB |  00m00s
[ 66/156] Installing p11-kit-0:0.25.5-3 100% | 116.5 MiB/s |   3.1 MiB |  00m00s
[ 67/156] Installing alternatives-0:1.3 100% | 107.3 MiB/s | 219.8 KiB |  00m00s
[ 68/156] Installing libunistring-0:1.1 100% | 144.0 MiB/s |   1.9 MiB |  00m00s
[ 69/156] Installing libidn2-0:2.3.7-2. 100% |  64.6 MiB/s | 462.8 KiB |  00m00s
[ 70/156] Installing libpsl-0:0.21.5-4. 100% |  96.4 MiB/s | 197.3 KiB |  00m00s
[ 71/156] Installing p11-kit-trust-0:0. 100% |  64.2 MiB/s | 657.0 KiB |  00m00s
[ 72/156] Installing zstd-0:1.5.6-2.fc4 100% | 137.7 MiB/s |   2.1 MiB |  00m00s
[ 73/156] Installing util-linux-core-0: 100% | 159.0 MiB/s |   6.2 MiB |  00m00s
[ 74/156] Installing tar-2:1.35-4.fc41. 100% | 127.7 MiB/s |   3.2 MiB |  00m00s
[ 75/156] Installing libsemanage-0:3.7- 100% |  80.0 MiB/s | 491.3 KiB |  00m00s
[ 76/156] Installing shadow-utils-2:4.1 100% | 112.2 MiB/s |   7.4 MiB |  00m00s
[ 77/156] Installing zip-0:3.0-41.fc41. 100% | 138.7 MiB/s |   1.2 MiB |  00m00s
[ 78/156] Installing gdbm-1:1.23-7.fc41 100% | 101.3 MiB/s | 933.2 KiB |  00m00s
[ 79/156] Installing cyrus-sasl-lib-0:2 100% | 147.7 MiB/s |   3.5 MiB |  00m00s
[ 80/156] Installing libfdisk-0:2.40.2- 100% | 119.6 MiB/s | 612.2 KiB |  00m00s
[ 81/156] Installing libxml2-0:2.12.8-2 100% | 139.8 MiB/s |   2.5 MiB |  00m00s
[ 82/156] Installing bzip2-0:1.0.8-19.f 100% | 105.5 MiB/s | 432.0 KiB |  00m00s
[ 83/156] Installing add-determinism-0: 100% | 141.7 MiB/s |   2.4 MiB |  00m00s
[ 84/156] Installing build-reproducibil 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[ 85/156] Installing sqlite-libs-0:3.46 100% | 142.7 MiB/s |   2.0 MiB |  00m00s
[ 86/156] Installing ed-0:1.20.2-2.fc41 100% |  92.8 MiB/s | 285.1 KiB |  00m00s
[ 87/156] Installing patch-0:2.7.6-25.f 100% |  95.7 MiB/s | 392.1 KiB |  00m00s
[ 88/156] Installing elfutils-default-y 100% | 510.7 KiB/s |   2.0 KiB |  00m00s
[ 89/156] Installing elfutils-libs-0:0. 100% | 130.4 MiB/s |   1.0 MiB |  00m00s
[ 90/156] Installing cpio-0:2.15-2.fc41 100% |  93.9 MiB/s |   1.2 MiB |  00m00s
[ 91/156] Installing diffutils-0:3.10-8 100% | 114.3 MiB/s |   2.2 MiB |  00m00s
[ 92/156] Installing librtas-0:2.0.6-2. 100% |  40.7 MiB/s | 499.7 KiB |  00m00s
[ 93/156] Installing libgomp-0:14.2.1-3 100% | 113.4 MiB/s | 696.8 KiB |  00m00s
[ 94/156] Installing libpkgconf-0:2.3.0 100% |  64.8 MiB/s | 199.1 KiB |  00m00s
[ 95/156] Installing pkgconf-0:2.3.0-1. 100% |  79.1 MiB/s | 243.0 KiB |  00m00s
[ 96/156] Installing pkgconf-pkg-config 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[ 97/156] Installing keyutils-libs-0:1. 100% | 111.1 MiB/s | 227.5 KiB |  00m00s
[ 98/156] Installing libverto-0:0.3.2-9 100% |  64.8 MiB/s | 199.0 KiB |  00m00s
[ 99/156] Installing jansson-0:2.13.1-1 100% | 108.3 MiB/s | 221.7 KiB |  00m00s
[100/156] Installing xxhash-libs-0:0.8. 100% | 104.2 MiB/s | 213.3 KiB |  00m00s
[101/156] Installing libbrotli-0:1.1.0- 100% | 115.0 MiB/s |   1.3 MiB |  00m00s
[102/156] Installing libnghttp2-0:1.63. 100% | 106.5 MiB/s | 327.2 KiB |  00m00s
[103/156] Installing libtool-ltdl-0:2.4 100% | 109.0 MiB/s | 223.2 KiB |  00m00s
[104/156] Installing rust-srpm-macros-0 100% |   5.4 MiB/s |   5.6 KiB |  00m00s
[105/156] Installing qt6-srpm-macros-0: 100% | 714.8 KiB/s | 732.0   B |  00m00s
[106/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[107/156] Installing perl-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[108/156] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[109/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[110/156] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.2 KiB |  00m00s
[111/156] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[112/156] Installing gnat-srpm-macros-0 100% |   1.2 MiB/s |   1.3 KiB |  00m00s
[113/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[114/156] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0   B |  00m00s
[115/156] Installing ansible-srpm-macro 100% |  17.7 MiB/s |  36.2 KiB |  00m00s
[116/156] Installing coreutils-common-0 100% | 128.6 MiB/s |  11.2 MiB |  00m00s
[117/156] Installing openssl-libs-1:3.2 100% | 144.2 MiB/s |   8.7 MiB |  00m00s
[118/156] Installing coreutils-0:9.5-9. 100% | 180.6 MiB/s |  21.5 MiB |  00m00s
[119/156] Installing ca-certificates-0: 100% |   1.0 MiB/s |   2.4 MiB |  00m02s
[120/156] Installing krb5-libs-0:1.21.3 100% | 132.6 MiB/s |   3.8 MiB |  00m00s
[121/156] Installing libarchive-0:3.7.4 100% | 107.0 MiB/s |   1.4 MiB |  00m00s
[122/156] Installing libtirpc-0:1.3.5-0 100% |  98.8 MiB/s | 404.5 KiB |  00m00s
[123/156] Installing gzip-0:1.13-2.fc41 100% |  90.9 MiB/s | 558.4 KiB |  00m00s
[124/156] Installing authselect-libs-0: 100% |  66.0 MiB/s | 946.7 KiB |  00m00s
[125/156] Installing cracklib-0:2.9.11- 100% |  83.9 MiB/s | 945.6 KiB |  00m00s
[126/156] Installing libpwquality-0:1.4 100% |  92.2 MiB/s |   1.1 MiB |  00m00s
[127/156] Installing libnsl2-0:2.0.1-2. 100% |  72.6 MiB/s | 222.9 KiB |  00m00s
[128/156] Installing pam-0:1.6.1-6.fc42 100% | 164.5 MiB/s |  11.0 MiB |  00m00s
[129/156] Installing libssh-0:0.11.1-1. 100% | 126.9 MiB/s | 779.8 KiB |  00m00s
[130/156] Installing rpm-sequoia-0:1.7. 100% | 150.8 MiB/s |   2.9 MiB |  00m00s
[131/156] Installing rpm-libs-0:4.19.94 100% | 144.5 MiB/s |   1.2 MiB |  00m00s
[132/156] Installing rpm-build-libs-0:4 100% | 127.4 MiB/s | 391.4 KiB |  00m00s
[133/156] Installing libevent-0:2.1.12- 100% | 144.1 MiB/s |   1.6 MiB |  00m00s
[134/156] Installing openldap-0:2.6.8-5 100% | 124.6 MiB/s |   1.1 MiB |  00m00s
[135/156] Installing libcurl-0:8.10.1-1 100% | 136.2 MiB/s |   1.1 MiB |  00m00s
[136/156] Installing elfutils-debuginfo 100% |  97.3 MiB/s | 398.5 KiB |  00m00s
[137/156] Installing elfutils-0:0.191-8 100% | 169.9 MiB/s |   5.3 MiB |  00m00s
[138/156] Installing binutils-0:2.43.50 100% | 118.1 MiB/s |  33.2 MiB |  00m00s
[139/156] Installing gdb-minimal-0:15.1 100% | 158.6 MiB/s |  15.5 MiB |  00m00s
[140/156] Installing debugedit-0:5.0-17 100% |  98.0 MiB/s | 501.8 KiB |  00m00s
[141/156] Installing curl-0:8.10.1-1.fc 100% |  40.7 MiB/s | 583.7 KiB |  00m00s
[142/156] Installing rpm-0:4.19.94-1.fc 100% |  22.2 MiB/s |   3.4 MiB |  00m00s
[143/156] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[144/156] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[145/156] Installing zig-srpm-macros-0: 100% |   1.6 MiB/s |   1.7 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |  39.4 MiB/s |  40.4 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |  30.3 MiB/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |  25.5 MiB/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  31.5 MiB/s | 193.2 KiB |  00m00s
[151/156] Installing rpm-build-0:4.19.9 100% | 126.9 MiB/s |   1.4 MiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% | 833.3 KiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% |  81.4 MiB/s |  17.3 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% |  61.3 MiB/s | 313.8 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  34.9 MiB/s | 250.2 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
[156/156] Installing info-0:7.1.1-1.fc4 100% | 257.0 KiB/s | 741.9 KiB |  00m03s
Warning: skipped PGP checks for 2 packages from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-1.fc41.ppc64le
alternatives-1.30-1.fc41.ppc64le
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.ppc64le
authselect-1.5.0-7.fc41.ppc64le
authselect-libs-1.5.0-7.fc41.ppc64le
basesystem-11-21.fc41.noarch
bash-5.2.32-2.fc42.ppc64le
binutils-2.43.50-1.fc42.ppc64le
build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch
bzip2-1.0.8-19.fc41.ppc64le
bzip2-libs-1.0.8-19.fc41.ppc64le
ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch
coreutils-9.5-9.fc42.ppc64le
coreutils-common-9.5-9.fc42.ppc64le
cpio-2.15-2.fc41.ppc64le
cracklib-2.9.11-6.fc41.ppc64le
crypto-policies-20240828-1.git5f66e81.fc42.noarch
curl-8.10.1-1.fc42.ppc64le
cyrus-sasl-lib-2.1.28-27.fc41.ppc64le
debugedit-5.0-17.fc41.ppc64le
diffutils-3.10-8.fc41.ppc64le
dwz-0.15-7.fc41.ppc64le
ed-1.20.2-2.fc41.ppc64le
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.ppc64le
elfutils-debuginfod-client-0.191-8.fc41.ppc64le
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.ppc64le
elfutils-libs-0.191-8.fc41.ppc64le
fedora-gpg-keys-42-0.2.noarch
fedora-release-42-0.3.noarch
fedora-release-common-42-0.3.noarch
fedora-release-identity-basic-42-0.3.noarch
fedora-repos-42-0.2.noarch
fedora-repos-rawhide-42-0.2.noarch
file-5.45-7.fc41.ppc64le
file-libs-5.45-7.fc41.ppc64le
filesystem-3.18-29.fc42.ppc64le
findutils-4.10.0-4.fc41.ppc64le
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.2-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.ppc64le
gdb-minimal-15.1-2.fc42.ppc64le
gdbm-1.23-7.fc41.ppc64le
gdbm-libs-1.23-7.fc41.ppc64le
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-1.fc42.ppc64le
glibc-common-2.40.9000-1.fc42.ppc64le
glibc-gconv-extra-2.40.9000-1.fc42.ppc64le
glibc-minimal-langpack-2.40.9000-1.fc42.ppc64le
gmp-6.3.0-2.fc41.ppc64le
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.ppc64le
gzip-1.13-2.fc41.ppc64le
info-7.1.1-1.fc42.ppc64le
jansson-2.13.1-10.fc41.ppc64le
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.ppc64le
krb5-libs-1.21.3-2.fc41.ppc64le
libacl-2.3.2-2.fc41.ppc64le
libarchive-3.7.4-3.fc42.ppc64le
libattr-2.5.2-4.fc41.ppc64le
libblkid-2.40.2-8.fc42.ppc64le
libbrotli-1.1.0-5.fc41.ppc64le
libcap-2.70-4.fc41.ppc64le
libcap-ng-0.8.5-3.fc41.ppc64le
libcom_err-1.47.1-3.fc41.ppc64le
libcurl-8.10.1-1.fc42.ppc64le
libeconf-0.6.2-3.fc41.ppc64le
libevent-2.1.12-14.fc41.ppc64le
libfdisk-2.40.2-8.fc42.ppc64le
libffi-3.4.6-3.fc42.ppc64le
libgcc-14.2.1-3.fc42.ppc64le
libgomp-14.2.1-3.fc42.ppc64le
libidn2-2.3.7-2.fc41.ppc64le
libmount-2.40.2-8.fc42.ppc64le
libnghttp2-1.63.0-1.fc42.ppc64le
libnsl2-2.0.1-2.fc41.ppc64le
libpkgconf-2.3.0-1.fc42.ppc64le
libpsl-0.21.5-4.fc41.ppc64le
libpwquality-1.4.5-11.fc41.ppc64le
librtas-2.0.6-2.fc41.ppc64le
libselinux-3.7-6.fc42.ppc64le
libsemanage-3.7-3.fc42.ppc64le
libsepol-3.7-3.fc42.ppc64le
libsmartcols-2.40.2-8.fc42.ppc64le
libssh-0.11.1-1.fc42.ppc64le
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-3.fc42.ppc64le
libtasn1-4.19.0-9.fc41.ppc64le
libtirpc-1.3.5-0.fc41.ppc64le
libtool-ltdl-2.4.7-12.fc41.ppc64le
libunistring-1.1-8.fc41.ppc64le
libuuid-2.40.2-8.fc42.ppc64le
libverto-0.3.2-9.fc41.ppc64le
libxcrypt-4.4.36-7.fc41.ppc64le
libxml2-2.12.8-2.fc41.ppc64le
libzstd-1.5.6-2.fc41.ppc64le
lua-libs-5.4.6-6.fc41.ppc64le
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.ppc64le
mpfr-4.2.1-5.fc41.ppc64le
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.ppc64le
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.ppc64le
openssl-libs-3.2.2-8.fc42.ppc64le
p11-kit-0.25.5-3.fc41.ppc64le
p11-kit-trust-0.25.5-3.fc41.ppc64le
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-6.fc42.ppc64le
pam-libs-1.6.1-6.fc42.ppc64le
patch-2.7.6-25.fc41.ppc64le
pcre2-10.44-1.fc41.1.ppc64le
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.ppc64le
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.ppc64le
popt-1.19-7.fc41.ppc64le
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.15.0-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-11.fc42.ppc64le
redhat-rpm-config-295-1.fc42.noarch
rpm-4.19.94-1.fc42.ppc64le
rpm-build-4.19.94-1.fc42.ppc64le
rpm-build-libs-4.19.94-1.fc42.ppc64le
rpm-libs-4.19.94-1.fc42.ppc64le
rpm-sequoia-1.7.0-2.fc41.ppc64le
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.ppc64le
setup-2.15.0-5.fc41.noarch
shadow-utils-4.16.0-4.fc42.ppc64le
sqlite-libs-3.46.0-4.fc41.ppc64le
systemd-libs-256.5-1.fc42.ppc64le
tar-1.35-4.fc41.ppc64le
unzip-6.0-64.fc41.ppc64le
util-linux-2.40.2-8.fc42.ppc64le
util-linux-core-2.40.2-8.fc42.ppc64le
which-2.21-42.fc41.ppc64le
xxhash-libs-0.8.2-3.fc41.ppc64le
xz-5.6.2-2.fc41.ppc64le
xz-libs-5.6.2-2.fc41.ppc64le
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.ppc64le
zlib-ng-compat-2.2.2-1.fc42.ppc64le
zstd-1.5.6-2.fc41.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1721174400
Wrote: /builddir/build/SRPMS/bcftools-1.15.1-10.fc42.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-ppc64le-1727281667.714033/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1727281667.714033/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-sdvz9etd/bcftools/bcftools.spec) Config(child) 0 minutes 39 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.15.1-10.fc42.src.rpm)  Config(fedora-rawhide-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1727281667.714033/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1727281667.714033/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1727281667.714033/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.94-1.fc42.ppc64le
  rpm-sequoia-1.7.0-2.fc41.ppc64le
  dnf5-5.2.6.2-1.fc42.ppc64le
  dnf5-plugins-5.2.6.2-1.fc42.ppc64le
Finish: chroot init
Start: build phase for bcftools-1.15.1-10.fc42.src.rpm
Start: build setup for bcftools-1.15.1-10.fc42.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1721174400
Wrote: /builddir/build/SRPMS/bcftools-1.15.1-10.fc42.src.rpm
Updating and loading repositories:
 fedora                                 100% | 148.6 KiB/s |   5.8 KiB |  00m00s
 Copr repository                        100% |  39.3 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% | 425.4 KiB/s | 453.0 KiB |  00m01s
 Copr repository                        100% |   5.1 MiB/s | 569.6 KiB |  00m00s
Repositories loaded.
Package                  Arch    Version                         Repository      Size
Installing:
 gcc                     ppc64le 14.2.1-3.fc42                   fedora      93.1 MiB
 gsl-devel               ppc64le 2.7.1-11.fc41                   fedora       1.6 MiB
 htslib-devel            ppc64le 1.15.1-6.fc41                   fedora     411.0 KiB
 htslib-tools            ppc64le 1.15.1-6.fc41                   fedora       3.3 MiB
 make                    ppc64le 1:4.4.1-8.fc41                  fedora       2.0 MiB
 perl-ExtUtils-Embed     noarch  1.35-511.fc41                   fedora      15.5 KiB
 perl-File-Temp          noarch  1:0.231.100-511.fc41            fedora     162.3 KiB
 perl-FindBin            noarch  1.54-511.fc41                   fedora       6.7 KiB
 perl-Getopt-Long        noarch  1:2.58-2.fc41                   fedora     144.5 KiB
 perl-interpreter        ppc64le 4:5.40.0-511.fc41               fedora     302.2 KiB
 zlib-ng-compat-devel    ppc64le 2.2.2-1.fc42                    copr_base  106.8 KiB
Installing dependencies:
 annobin-docs            noarch  12.70-1.fc42                    fedora      97.7 KiB
 annobin-plugin-gcc      ppc64le 12.70-1.fc42                    fedora       1.1 MiB
 autoconf                noarch  2.72-3.fc41                     fedora       2.8 MiB
 automake                noarch  1.16.5-17.fc41                  fedora       1.7 MiB
 cmake-filesystem        ppc64le 3.28.3-7.fc41                   fedora       0.0   B
 cpp                     ppc64le 14.2.1-3.fc42                   fedora      32.4 MiB
 emacs-filesystem        noarch  1:30.0-3.fc41                   fedora       0.0   B
 expat                   ppc64le 2.6.3-1.fc42                    fedora     603.3 KiB
 gcc-plugin-annobin      ppc64le 14.2.1-3.fc42                   fedora     196.9 KiB
 glibc-devel             ppc64le 2.40.9000-1.fc42                fedora       2.7 MiB
 groff-base              ppc64le 1.23.0-7.fc41                   fedora       5.4 MiB
 gsl                     ppc64le 2.7.1-11.fc41                   fedora       4.7 MiB
 htslib                  ppc64le 1.15.1-6.fc41                   fedora       2.0 MiB
 kernel-headers          ppc64le 6.11.0-63.fc42                  fedora       6.4 MiB
 libasan                 ppc64le 14.2.1-3.fc42                   fedora       2.0 MiB
 libatomic               ppc64le 14.2.1-3.fc42                   fedora     196.2 KiB
 libb2                   ppc64le 0.98.1-12.fc41                  fedora     202.1 KiB
 libmpc                  ppc64le 1.3.1-6.fc41                    fedora     345.6 KiB
 libubsan                ppc64le 14.2.1-3.fc42                   fedora     732.5 KiB
 libxcrypt-devel         ppc64le 4.4.36-7.fc41                   fedora      30.3 KiB
 m4                      ppc64le 1.4.19-10.fc41                  fedora     732.6 KiB
 mpdecimal               ppc64le 2.5.1-16.fc41                   fedora     328.9 KiB
 ncurses                 ppc64le 6.5-2.20240629.fc41             fedora       1.7 MiB
 perl-AutoLoader         noarch  5.74-511.fc41                   fedora      20.5 KiB
 perl-AutoSplit          noarch  5.74-511.fc41                   fedora      23.1 KiB
 perl-B                  ppc64le 1.89-511.fc41                   fedora     605.9 KiB
 perl-Benchmark          noarch  1.25-511.fc41                   fedora      36.3 KiB
 perl-Carp               noarch  1.54-511.fc41                   fedora      46.6 KiB
 perl-Class-Struct       noarch  0.68-511.fc41                   fedora      25.4 KiB
 perl-Data-Dumper        ppc64le 2.189-512.fc41                  fedora     263.4 KiB
 perl-Devel-PPPort       ppc64le 3.72-512.fc41                   fedora       1.0 MiB
 perl-Digest             noarch  1.20-511.fc41                   fedora      35.3 KiB
 perl-Digest-MD5         ppc64le 2.59-5.fc41                     fedora     231.5 KiB
 perl-DynaLoader         ppc64le 1.56-511.fc41                   fedora      32.1 KiB
 perl-Encode             ppc64le 4:3.21-511.fc41                 fedora       5.9 MiB
 perl-Errno              ppc64le 1.38-511.fc41                   fedora       8.4 KiB
 perl-Exporter           noarch  5.78-511.fc41                   fedora      54.3 KiB
 perl-ExtUtils-Command   noarch  2:7.70-512.fc41                 fedora       9.6 KiB
 perl-ExtUtils-Constant  noarch  0.25-511.fc41                   fedora      85.8 KiB
 perl-ExtUtils-Install   noarch  2.22-511.fc41                   fedora      85.5 KiB
 perl-ExtUtils-MakeMaker noarch  2:7.70-512.fc41                 fedora     734.1 KiB
 perl-ExtUtils-Manifest  noarch  1:1.75-511.fc41                 fedora      84.8 KiB
 perl-ExtUtils-ParseXS   noarch  1:3.51-511.fc41                 fedora     399.7 KiB
 perl-Fcntl              ppc64le 1.18-511.fc41                   fedora     220.7 KiB
 perl-File-Basename      noarch  2.86-511.fc41                   fedora      14.0 KiB
 perl-File-Compare       noarch  1.100.800-511.fc41              fedora       5.6 KiB
 perl-File-Copy          noarch  2.41-511.fc41                   fedora      19.6 KiB
 perl-File-Find          noarch  1.44-511.fc41                   fedora      41.9 KiB
 perl-File-Path          noarch  2.18-511.fc41                   fedora      63.5 KiB
 perl-File-stat          noarch  1.14-511.fc41                   fedora      12.5 KiB
 perl-FileHandle         noarch  2.05-511.fc41                   fedora       9.3 KiB
 perl-Getopt-Std         noarch  1.14-511.fc41                   fedora      11.2 KiB
 perl-HTTP-Tiny          noarch  0.088-512.fc41                  fedora     152.2 KiB
 perl-IO                 ppc64le 1.55-511.fc41                   fedora     318.8 KiB
 perl-IO-Socket-IP       noarch  0.42-512.fc41                   fedora      98.7 KiB
 perl-IO-Socket-SSL      noarch  2.089-1.fc42                    fedora     703.3 KiB
 perl-IPC-Open3          noarch  1.22-511.fc41                   fedora      22.5 KiB
 perl-MIME-Base32        noarch  1.303-21.fc41                   fedora      30.7 KiB
 perl-MIME-Base64        ppc64le 3.16-511.fc41                   fedora     221.8 KiB
 perl-Mozilla-CA         noarch  20240730-1.fc41                 fedora       9.8 KiB
 perl-Net-SSLeay         ppc64le 1.94-7.fc41                     fedora       1.6 MiB
 perl-POSIX              ppc64le 2.20-511.fc41                   fedora     392.0 KiB
 perl-PathTools          ppc64le 3.91-511.fc41                   fedora     351.9 KiB
 perl-Pod-Escapes        noarch  1:1.07-511.fc41                 fedora      24.9 KiB
 perl-Pod-Perldoc        noarch  3.28.01-512.fc41                fedora     163.7 KiB
 perl-Pod-Simple         noarch  1:3.45-511.fc41                 fedora     560.9 KiB
 perl-Pod-Usage          noarch  4:2.03-511.fc41                 fedora      84.8 KiB
 perl-Scalar-List-Utils  ppc64le 5:1.66-1.fc42                   fedora     278.4 KiB
 perl-SelectSaver        noarch  1.02-511.fc41                   fedora       2.2 KiB
 perl-Socket             ppc64le 4:2.038-511.fc41                fedora     271.7 KiB
 perl-Storable           ppc64le 1:3.32-511.fc41                 fedora     372.3 KiB
 perl-Symbol             noarch  1.09-511.fc41                   fedora       6.8 KiB
 perl-Term-ANSIColor     noarch  5.01-512.fc41                   fedora      97.5 KiB
 perl-Term-Cap           noarch  1.18-511.fc41                   fedora      29.3 KiB
 perl-Test-Harness       noarch  1:3.50-1.fc42                   fedora     559.6 KiB
 perl-Text-ParseWords    noarch  3.31-511.fc41                   fedora      13.6 KiB
 perl-Text-Tabs+Wrap     noarch  2024.001-511.fc41               fedora      22.6 KiB
 perl-Thread-Queue       noarch  3.14-511.fc41                   fedora      28.9 KiB
 perl-Time-Local         noarch  2:1.350-511.fc41                fedora      69.0 KiB
 perl-URI                noarch  5.29-1.fc42                     fedora     251.9 KiB
 perl-base               noarch  2.27-511.fc41                   fedora      12.5 KiB
 perl-constant           noarch  1.33-512.fc41                   fedora      26.2 KiB
 perl-devel              ppc64le 4:5.40.0-511.fc41               fedora       8.0 MiB
 perl-if                 noarch  0.61.000-511.fc41               fedora       5.8 KiB
 perl-lib                ppc64le 0.65-511.fc41                   fedora       8.5 KiB
 perl-libnet             noarch  3.15-512.fc41                   fedora     289.4 KiB
 perl-libs               ppc64le 4:5.40.0-511.fc41               fedora      11.5 MiB
 perl-locale             noarch  1.12-511.fc41                   fedora       6.5 KiB
 perl-mro                ppc64le 1.29-511.fc41                   fedora     209.3 KiB
 perl-overload           noarch  1.37-511.fc41                   fedora      71.5 KiB
 perl-overloading        noarch  0.02-511.fc41                   fedora       4.8 KiB
 perl-parent             noarch  1:0.242-1.fc42                  fedora      10.0 KiB
 perl-podlators          noarch  1:6.0.2-2.fc41                  fedora     317.5 KiB
 perl-threads            ppc64le 1:2.40-511.fc41                 fedora     263.1 KiB
 perl-threads-shared     ppc64le 1.69-511.fc41                   fedora     231.5 KiB
 perl-vars               noarch  1.05-511.fc41                   fedora       3.9 KiB
 perl-version            ppc64le 9:0.99.33-1.fc42                fedora     288.6 KiB
 python-pip-wheel        noarch  24.2-2.fc42                     fedora       1.2 MiB
 python3                 ppc64le 3.13.0~rc2-3.fc42               fedora     211.7 KiB
 python3-libs            ppc64le 3.13.0~rc2-3.fc42               fedora      50.6 MiB
 python3-pyparsing       noarch  3.1.2-7.fc41                    fedora       1.0 MiB
 systemtap-sdt-devel     ppc64le 5.2~pre17250223gd07e4284-1.fc42 fedora     182.4 KiB
 systemtap-sdt-dtrace    ppc64le 5.2~pre17250223gd07e4284-1.fc42 fedora     178.9 KiB
 tzdata                  noarch  2024a-9.fc41                    fedora       1.7 MiB

Transaction Summary:
 Installing:       115 packages

Total size of inbound packages is 75 MiB. Need to download 75 MiB.
After this operation, 261 MiB extra will be used (install 261 MiB, remove 0 B).
[  1/115] htslib-devel-0:1.15.1-6.fc41. 100% | 898.1 KiB/s | 104.2 KiB |  00m00s
[  2/115] gsl-devel-0:2.7.1-11.fc41.ppc 100% |   3.4 MiB/s | 652.9 KiB |  00m00s
[  3/115] htslib-tools-0:1.15.1-6.fc41. 100% |   7.0 MiB/s | 624.8 KiB |  00m00s
[  4/115] make-1:4.4.1-8.fc41.ppc64le   100% |  14.7 MiB/s | 600.7 KiB |  00m00s
[  5/115] perl-ExtUtils-Embed-0:1.35-51 100% | 504.0 KiB/s |  17.6 KiB |  00m00s
[  6/115] perl-File-Temp-1:0.231.100-51 100% |   2.0 MiB/s |  59.1 KiB |  00m00s
[  7/115] perl-FindBin-0:1.54-511.fc41. 100% | 354.5 KiB/s |  14.2 KiB |  00m00s
[  8/115] perl-Getopt-Long-1:2.58-2.fc4 100% |   1.8 MiB/s |  63.9 KiB |  00m00s
[  9/115] perl-interpreter-4:5.40.0-511 100% |   2.1 MiB/s |  72.3 KiB |  00m00s
[ 10/115] zlib-ng-compat-devel-0:2.2.2- 100% | 771.6 KiB/s |  38.6 KiB |  00m00s
[ 11/115] glibc-devel-0:2.40.9000-1.fc4 100% |  11.8 MiB/s | 650.0 KiB |  00m00s
[ 12/115] libasan-0:14.2.1-3.fc42.ppc64 100% |   8.9 MiB/s | 517.7 KiB |  00m00s
[ 13/115] libatomic-0:14.2.1-3.fc42.ppc 100% | 739.9 KiB/s |  42.9 KiB |  00m00s
[ 14/115] libmpc-0:1.3.1-6.fc41.ppc64le 100% |   1.6 MiB/s |  95.8 KiB |  00m00s
[ 15/115] cpp-0:14.2.1-3.fc42.ppc64le   100% |  32.6 MiB/s |  10.5 MiB |  00m00s
[ 16/115] libubsan-0:14.2.1-3.fc42.ppc6 100% |   3.8 MiB/s | 264.1 KiB |  00m00s
[ 17/115] gcc-0:14.2.1-3.fc42.ppc64le   100% |  38.4 MiB/s |  32.3 MiB |  00m01s
[ 18/115] automake-0:1.16.5-17.fc41.noa 100% |   3.3 MiB/s | 696.9 KiB |  00m00s
[ 19/115] gsl-0:2.7.1-11.fc41.ppc64le   100% |   5.7 MiB/s |   1.2 MiB |  00m00s
[ 20/115] perl-Exporter-0:5.78-511.fc41 100% |   1.2 MiB/s |  30.9 KiB |  00m00s
[ 21/115] perl-PathTools-0:3.91-511.fc4 100% |   3.9 MiB/s |  87.9 KiB |  00m00s
[ 22/115] htslib-0:1.15.1-6.fc41.ppc64l 100% |  12.2 MiB/s | 560.2 KiB |  00m00s
[ 23/115] perl-Carp-0:1.54-511.fc41.noa 100% |   1.1 MiB/s |  28.9 KiB |  00m00s
[ 24/115] perl-devel-4:5.40.0-511.fc41. 100% |  12.7 MiB/s | 764.3 KiB |  00m00s
[ 25/115] perl-Errno-0:1.38-511.fc41.pp 100% | 617.9 KiB/s |  14.8 KiB |  00m00s
[ 26/115] perl-libs-4:5.40.0-511.fc41.p 100% |  28.8 MiB/s |   2.4 MiB |  00m00s
[ 27/115] perl-Fcntl-0:1.18-511.fc41.pp 100% |   1.1 MiB/s |  30.2 KiB |  00m00s
[ 28/115] perl-File-Path-0:2.18-511.fc4 100% |   1.4 MiB/s |  35.3 KiB |  00m00s
[ 29/115] perl-POSIX-0:2.20-511.fc41.pp 100% |   4.8 MiB/s | 117.7 KiB |  00m00s
[ 30/115] perl-IO-0:1.55-511.fc41.ppc64 100% |   3.2 MiB/s |  82.5 KiB |  00m00s
[ 31/115] perl-Scalar-List-Utils-5:1.66 100% |   2.9 MiB/s |  75.3 KiB |  00m00s
[ 32/115] perl-constant-0:1.33-512.fc41 100% |   1.1 MiB/s |  23.0 KiB |  00m00s
[ 33/115] perl-overload-0:1.37-511.fc41 100% |   1.9 MiB/s |  45.5 KiB |  00m00s
[ 34/115] perl-parent-1:0.242-1.fc42.no 100% | 623.2 KiB/s |  15.0 KiB |  00m00s
[ 35/115] perl-File-Basename-0:2.86-511 100% | 815.4 KiB/s |  17.1 KiB |  00m00s
[ 36/115] perl-Pod-Usage-4:2.03-511.fc4 100% |   1.6 MiB/s |  40.0 KiB |  00m00s
[ 37/115] perl-Text-ParseWords-0:3.31-5 100% | 690.6 KiB/s |  16.6 KiB |  00m00s
[ 38/115] perl-base-0:2.27-511.fc41.noa 100% | 770.1 KiB/s |  16.2 KiB |  00m00s
[ 39/115] cmake-filesystem-0:3.28.3-7.f 100% | 756.7 KiB/s |  18.2 KiB |  00m00s
[ 40/115] libxcrypt-devel-0:4.4.36-7.fc 100% | 757.3 KiB/s |  28.8 KiB |  00m00s
[ 41/115] kernel-headers-0:6.11.0-63.fc 100% |  27.7 MiB/s |   1.6 MiB |  00m00s
[ 42/115] autoconf-0:2.72-3.fc41.noarch 100% |  17.6 MiB/s | 829.7 KiB |  00m00s
[ 43/115] perl-Class-Struct-0:0.68-511. 100% |   1.0 MiB/s |  22.0 KiB |  00m00s
[ 44/115] perl-File-stat-0:1.14-511.fc4 100% | 708.6 KiB/s |  17.0 KiB |  00m00s
[ 45/115] perl-threads-1:2.40-511.fc41. 100% |   2.7 MiB/s |  58.4 KiB |  00m00s
[ 46/115] perl-Thread-Queue-0:3.14-511. 100% | 888.0 KiB/s |  21.3 KiB |  00m00s
[ 47/115] perl-ExtUtils-Constant-0:0.25 100% |   1.4 MiB/s |  43.7 KiB |  00m00s
[ 48/115] perl-ExtUtils-Install-0:2.22- 100% |   1.4 MiB/s |  43.6 KiB |  00m00s
[ 49/115] perl-Devel-PPPort-0:3.72-512. 100% |   5.1 MiB/s | 221.0 KiB |  00m00s
[ 50/115] perl-File-Compare-0:1.100.800 100% | 550.5 KiB/s |  13.2 KiB |  00m00s
[ 51/115] perl-ExtUtils-ParseXS-1:3.51- 100% |   5.9 MiB/s | 187.3 KiB |  00m00s
[ 52/115] perl-Text-Tabs+Wrap-0:2024.00 100% | 840.4 KiB/s |  21.9 KiB |  00m00s
[ 53/115] perl-vars-0:1.05-511.fc41.noa 100% | 539.9 KiB/s |  13.0 KiB |  00m00s
[ 54/115] systemtap-sdt-dtrace-0:5.2~pr 100% |   2.1 MiB/s |  67.9 KiB |  00m00s
[ 55/115] systemtap-sdt-devel-0:5.2~pre 100% |   1.9 MiB/s |  67.3 KiB |  00m00s
[ 56/115] perl-DynaLoader-0:1.56-511.fc 100% |   1.1 MiB/s |  25.9 KiB |  00m00s
[ 57/115] perl-SelectSaver-0:1.02-511.f 100% | 467.4 KiB/s |  11.7 KiB |  00m00s
[ 58/115] perl-Socket-4:2.038-511.fc41. 100% |   2.2 MiB/s |  55.9 KiB |  00m00s
[ 59/115] perl-Encode-4:3.21-511.fc41.p 100% |  22.2 MiB/s |   1.0 MiB |  00m00s
[ 60/115] perl-Symbol-0:1.09-511.fc41.n 100% | 589.8 KiB/s |  14.2 KiB |  00m00s
[ 61/115] perl-locale-0:1.12-511.fc41.n 100% | 565.8 KiB/s |  13.6 KiB |  00m00s
[ 62/115] perl-mro-0:1.29-511.fc41.ppc6 100% |   1.4 MiB/s |  30.1 KiB |  00m00s
[ 63/115] perl-overloading-0:0.02-511.f 100% | 536.1 KiB/s |  12.9 KiB |  00m00s
[ 64/115] perl-Pod-Perldoc-0:3.28.01-51 100% |   3.4 MiB/s |  86.1 KiB |  00m00s
[ 65/115] perl-podlators-1:6.0.2-2.fc41 100% |   5.7 MiB/s | 128.8 KiB |  00m00s
[ 66/115] emacs-filesystem-1:30.0-3.fc4 100% | 285.7 KiB/s |   7.1 KiB |  00m00s
[ 67/115] perl-Data-Dumper-0:2.189-512. 100% |   2.7 MiB/s |  57.8 KiB |  00m00s
[ 68/115] m4-0:1.4.19-10.fc41.ppc64le   100% |  10.8 MiB/s | 321.3 KiB |  00m00s
[ 69/115] perl-File-Copy-0:2.41-511.fc4 100% | 803.3 KiB/s |  20.1 KiB |  00m00s
[ 70/115] perl-File-Find-0:1.44-511.fc4 100% |   1.2 MiB/s |  25.3 KiB |  00m00s
[ 71/115] perl-threads-shared-0:1.69-51 100% |   1.8 MiB/s |  46.4 KiB |  00m00s
[ 72/115] perl-AutoSplit-0:5.74-511.fc4 100% | 696.4 KiB/s |  21.6 KiB |  00m00s
[ 73/115] perl-ExtUtils-MakeMaker-2:7.7 100% |   9.2 MiB/s | 292.9 KiB |  00m00s
[ 74/115] python3-0:3.13.0~rc2-3.fc42.p 100% |   1.1 MiB/s |  27.8 KiB |  00m00s
[ 75/115] perl-Getopt-Std-0:1.14-511.fc 100% | 744.9 KiB/s |  15.6 KiB |  00m00s
[ 76/115] perl-MIME-Base64-0:3.16-511.f 100% |   1.2 MiB/s |  31.0 KiB |  00m00s
[ 77/115] python3-pyparsing-0:3.1.2-7.f 100% |   7.5 MiB/s | 277.4 KiB |  00m00s
[ 78/115] perl-Storable-1:3.32-511.fc41 100% |   4.6 MiB/s | 102.7 KiB |  00m00s
[ 79/115] groff-base-0:1.23.0-7.fc41.pp 100% |  27.6 MiB/s |   1.1 MiB |  00m00s
[ 80/115] perl-HTTP-Tiny-0:0.088-512.fc 100% |   1.4 MiB/s |  55.8 KiB |  00m00s
[ 81/115] perl-IPC-Open3-0:1.22-511.fc4 100% | 839.2 KiB/s |  21.8 KiB |  00m00s
[ 82/115] perl-Term-Cap-0:1.18-511.fc41 100% |   1.0 MiB/s |  22.1 KiB |  00m00s
[ 83/115] perl-Pod-Simple-1:3.45-511.fc 100% |   7.9 MiB/s | 219.0 KiB |  00m00s
[ 84/115] perl-Term-ANSIColor-0:5.01-51 100% |   1.8 MiB/s |  47.7 KiB |  00m00s
[ 85/115] perl-B-0:1.89-511.fc41.ppc64l 100% |   7.6 MiB/s | 179.4 KiB |  00m00s
[ 86/115] perl-ExtUtils-Manifest-1:1.75 100% |   1.3 MiB/s |  34.1 KiB |  00m00s
[ 87/115] perl-ExtUtils-Command-2:7.70- 100% | 440.0 KiB/s |  14.1 KiB |  00m00s
[ 88/115] perl-Test-Harness-1:3.50-1.fc 100% |   7.7 MiB/s | 277.0 KiB |  00m00s
[ 89/115] perl-version-9:0.99.33-1.fc42 100% |   2.5 MiB/s |  63.8 KiB |  00m00s
[ 90/115] perl-lib-0:0.65-511.fc41.ppc6 100% | 400.6 KiB/s |  14.8 KiB |  00m00s
[ 91/115] perl-IO-Socket-SSL-0:2.089-1. 100% |   8.1 MiB/s | 231.2 KiB |  00m00s
[ 92/115] perl-Mozilla-CA-0:20240730-1. 100% | 594.1 KiB/s |  14.3 KiB |  00m00s
[ 93/115] perl-Net-SSLeay-0:1.94-7.fc41 100% |  12.2 MiB/s | 388.2 KiB |  00m00s
[ 94/115] perl-Time-Local-2:1.350-511.f 100% |   1.1 MiB/s |  34.5 KiB |  00m00s
[ 95/115] perl-Pod-Escapes-1:1.07-511.f 100% | 733.8 KiB/s |  19.8 KiB |  00m00s
[ 96/115] perl-if-0:0.61.000-511.fc41.n 100% | 498.7 KiB/s |  14.0 KiB |  00m00s
[ 97/115] ncurses-0:6.5-2.20240629.fc41 100% |  14.1 MiB/s | 431.8 KiB |  00m00s
[ 98/115] perl-Benchmark-0:1.25-511.fc4 100% | 721.8 KiB/s |  26.7 KiB |  00m00s
[ 99/115] expat-0:2.6.3-1.fc42.ppc64le  100% |   3.8 MiB/s | 119.5 KiB |  00m00s
[100/115] libb2-0:0.98.1-12.fc41.ppc64l 100% |   1.0 MiB/s |  25.3 KiB |  00m00s
[101/115] mpdecimal-0:2.5.1-16.fc41.ppc 100% |   3.6 MiB/s | 103.0 KiB |  00m00s
[102/115] python-pip-wheel-0:24.2-2.fc4 100% |  27.3 MiB/s |   1.2 MiB |  00m00s
[103/115] python3-libs-0:3.13.0~rc2-3.f 100% |  35.8 MiB/s |   9.2 MiB |  00m00s
[104/115] perl-IO-Socket-IP-0:0.42-512. 100% | 804.2 KiB/s |  41.8 KiB |  00m00s
[105/115] tzdata-0:2024a-9.fc41.noarch  100% |   9.4 MiB/s | 714.7 KiB |  00m00s
[106/115] perl-AutoLoader-0:5.74-511.fc 100% |   1.0 MiB/s |  21.2 KiB |  00m00s
[107/115] perl-URI-0:5.29-1.fc42.noarch 100% |   5.2 MiB/s | 137.7 KiB |  00m00s
[108/115] perl-MIME-Base32-0:1.303-21.f 100% | 853.0 KiB/s |  20.5 KiB |  00m00s
[109/115] perl-libnet-0:3.15-512.fc41.n 100% |   5.7 MiB/s | 128.5 KiB |  00m00s
[110/115] perl-Digest-MD5-0:2.59-5.fc41 100% |   1.5 MiB/s |  36.3 KiB |  00m00s
[111/115] perl-FileHandle-0:2.05-511.fc 100% | 644.1 KiB/s |  15.5 KiB |  00m00s
[112/115] perl-Digest-0:1.20-511.fc41.n 100% |   1.2 MiB/s |  24.9 KiB |  00m00s
[113/115] annobin-plugin-gcc-0:12.70-1. 100% |  25.0 MiB/s | 974.0 KiB |  00m00s
[114/115] gcc-plugin-annobin-0:14.2.1-3 100% |   1.6 MiB/s |  57.5 KiB |  00m00s
[115/115] annobin-docs-0:12.70-1.fc42.n 100% |   3.7 MiB/s |  92.0 KiB |  00m00s
--------------------------------------------------------------------------------
[115/115] Total                         100% |  38.6 MiB/s |  74.7 MiB |  00m02s
Running transaction
[  1/117] Verify package files          100% | 142.0   B/s | 115.0   B |  00m01s
[  2/117] Prepare transaction           100% | 942.0   B/s | 115.0   B |  00m00s
[  3/117] Installing htslib-0:1.15.1-6. 100% | 128.0 MiB/s |   2.0 MiB |  00m00s
[  4/117] Installing libmpc-0:1.3.1-6.f 100% | 113.0 MiB/s | 347.1 KiB |  00m00s
[  5/117] Installing cpp-0:14.2.1-3.fc4 100% | 103.0 MiB/s |  32.4 MiB |  00m00s
[  6/117] Installing annobin-docs-0:12. 100% |  12.1 MiB/s |  98.8 KiB |  00m00s
[  7/117] Installing tzdata-0:2024a-9.f 100% |   7.0 MiB/s |   1.9 MiB |  00m00s
[  8/117] Installing python-pip-wheel-0 100% | 177.4 MiB/s |   1.2 MiB |  00m00s
[  9/117] Installing mpdecimal-0:2.5.1- 100% | 107.4 MiB/s | 330.0 KiB |  00m00s
[ 10/117] Installing libb2-0:0.98.1-12. 100% |  99.2 MiB/s | 203.2 KiB |  00m00s
[ 11/117] Installing expat-0:2.6.3-1.fc 100% |  42.2 MiB/s | 605.4 KiB |  00m00s
[ 12/117] Installing python3-libs-0:3.1 100% |  86.0 MiB/s |  51.0 MiB |  00m01s
[ 13/117] Installing python3-0:3.13.0~r 100% | 104.2 MiB/s | 213.5 KiB |  00m00s
[ 14/117] Installing python3-pyparsing- 100% |  89.9 MiB/s |   1.0 MiB |  00m00s
[ 15/117] Installing systemtap-sdt-dtra 100% |  88.0 MiB/s | 180.2 KiB |  00m00s
[ 16/117] Installing ncurses-0:6.5-2.20 100% |  76.1 MiB/s |   1.8 MiB |  00m00s
[ 17/117] Installing groff-base-0:1.23. 100% |  74.7 MiB/s |   5.4 MiB |  00m00s
[ 18/117] Installing perl-Digest-0:1.20 100% |  18.1 MiB/s |  37.1 KiB |  00m00s
[ 19/117] Installing perl-B-0:1.89-511. 100% |  24.8 MiB/s | 609.3 KiB |  00m00s
[ 20/117] Installing perl-FileHandle-0: 100% |   9.5 MiB/s |   9.8 KiB |  00m00s
[ 21/117] Installing perl-Digest-MD5-0: 100% |  76.0 MiB/s | 233.4 KiB |  00m00s
[ 22/117] Installing perl-Data-Dumper-0 100% |  64.8 MiB/s | 265.3 KiB |  00m00s
[ 23/117] Installing perl-MIME-Base32-0 100% |  15.7 MiB/s |  32.2 KiB |  00m00s
[ 24/117] Installing perl-libnet-0:3.15 100% |  57.6 MiB/s | 294.7 KiB |  00m00s
[ 25/117] Installing perl-IO-Socket-IP- 100% |  49.1 MiB/s | 100.5 KiB |  00m00s
[ 26/117] Installing perl-AutoLoader-0: 100% |  20.5 MiB/s |  20.9 KiB |  00m00s
[ 27/117] Installing perl-URI-0:5.29-1. 100% |  25.8 MiB/s | 263.8 KiB |  00m00s
[ 28/117] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[ 29/117] Installing perl-File-Path-0:2 100% |  63.0 MiB/s |  64.5 KiB |  00m00s
[ 30/117] Installing perl-locale-0:1.12 100% |   6.7 MiB/s |   6.9 KiB |  00m00s
[ 31/117] Installing perl-Mozilla-CA-0: 100% |   5.3 MiB/s |  10.8 KiB |  00m00s
[ 32/117] Installing perl-Time-Local-2: 100% |  34.5 MiB/s |  70.6 KiB |  00m00s
[ 33/117] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 34/117] Installing perl-if-0:0.61.000 100% |   6.1 MiB/s |   6.2 KiB |  00m00s
[ 35/117] Installing perl-Net-SSLeay-0: 100% |  90.0 MiB/s |   1.6 MiB |  00m00s
[ 36/117] Installing perl-IO-Socket-SSL 100% |  76.8 MiB/s | 707.4 KiB |  00m00s
[ 37/117] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 38/117] Installing perl-POSIX-0:2.20- 100% |  96.0 MiB/s | 393.3 KiB |  00m00s
[ 39/117] Installing perl-IPC-Open3-0:1 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[ 40/117] Installing perl-Term-ANSIColo 100% |  48.4 MiB/s |  99.2 KiB |  00m00s
[ 41/117] Installing perl-Term-Cap-0:1. 100% |  29.9 MiB/s |  30.6 KiB |  00m00s
[ 42/117] Installing perl-HTTP-Tiny-0:0 100% |  50.2 MiB/s | 154.2 KiB |  00m00s
[ 43/117] Installing perl-Pod-Simple-1: 100% |  69.6 MiB/s | 570.5 KiB |  00m00s
[ 44/117] Installing perl-File-Temp-1:0 100% |  80.1 MiB/s | 164.1 KiB |  00m00s
[ 45/117] Installing perl-Socket-4:2.03 100% |  89.1 MiB/s | 273.8 KiB |  00m00s
[ 46/117] Installing perl-SelectSaver-0 100% |   2.5 MiB/s |   2.6 KiB |  00m00s
[ 47/117] Installing perl-Symbol-0:1.09 100% |   7.0 MiB/s |   7.2 KiB |  00m00s
[ 48/117] Installing perl-File-stat-0:1 100% |  12.7 MiB/s |  13.1 KiB |  00m00s
[ 49/117] Installing perl-podlators-1:6 100% |  78.5 MiB/s | 321.4 KiB |  00m00s
[ 50/117] Installing perl-Pod-Perldoc-0 100% |  41.3 MiB/s | 169.3 KiB |  00m00s
[ 51/117] Installing perl-Fcntl-0:1.18- 100% | 108.3 MiB/s | 221.8 KiB |  00m00s
[ 52/117] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[ 53/117] Installing perl-base-0:2.27-5 100% |  12.6 MiB/s |  12.9 KiB |  00m00s
[ 54/117] Installing perl-mro-0:1.29-51 100% | 102.7 MiB/s | 210.4 KiB |  00m00s
[ 55/117] Installing perl-IO-0:1.55-511 100% |  78.9 MiB/s | 323.1 KiB |  00m00s
[ 56/117] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[ 57/117] Installing perl-Pod-Usage-4:2 100% |  42.2 MiB/s |  86.3 KiB |  00m00s
[ 58/117] Installing perl-Errno-0:1.38- 100% |   8.6 MiB/s |   8.8 KiB |  00m00s
[ 59/117] Installing perl-Scalar-List-U 100% |  68.8 MiB/s | 281.6 KiB |  00m00s
[ 60/117] Installing perl-constant-0:1. 100% |  26.7 MiB/s |  27.4 KiB |  00m00s
[ 61/117] Installing perl-parent-1:0.24 100% |  10.5 MiB/s |  10.7 KiB |  00m00s
[ 62/117] Installing perl-File-Basename 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[ 63/117] Installing perl-vars-0:1.05-5 100% |   4.2 MiB/s |   4.3 KiB |  00m00s
[ 64/117] Installing perl-overload-0:1. 100% |  70.3 MiB/s |  71.9 KiB |  00m00s
[ 65/117] Installing perl-Getopt-Std-0: 100% |  11.5 MiB/s |  11.7 KiB |  00m00s
[ 66/117] Installing perl-MIME-Base64-0 100% |  54.7 MiB/s | 224.1 KiB |  00m00s
[ 67/117] Installing perl-Storable-1:3. 100% |  91.3 MiB/s | 373.9 KiB |  00m00s
[ 68/117] Installing perl-Getopt-Long-1 100% |  47.9 MiB/s | 147.2 KiB |  00m00s
[ 69/117] Installing perl-Exporter-0:5. 100% |  54.3 MiB/s |  55.6 KiB |  00m00s
[ 70/117] Installing perl-Carp-0:1.54-5 100% |  46.6 MiB/s |  47.7 KiB |  00m00s
[ 71/117] Installing perl-PathTools-0:3 100% |  69.6 MiB/s | 356.5 KiB |  00m00s
[ 72/117] Installing perl-DynaLoader-0: 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[ 73/117] Installing perl-Encode-4:3.21 100% | 140.6 MiB/s |   5.9 MiB |  00m00s
[ 74/117] Installing perl-libs-4:5.40.0 100% |  52.7 MiB/s |  11.6 MiB |  00m00s
[ 75/117] Installing perl-interpreter-4 100% |  98.9 MiB/s | 303.9 KiB |  00m00s
[ 76/117] Installing perl-File-Find-0:1 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 77/117] Installing perl-File-Copy-0:2 100% |  19.7 MiB/s |  20.2 KiB |  00m00s
[ 78/117] Installing perl-File-Compare- 100% |   6.0 MiB/s |   6.1 KiB |  00m00s
[ 79/117] Installing perl-ExtUtils-Pars 100% |  65.9 MiB/s | 405.1 KiB |  00m00s
[ 80/117] Installing perl-threads-1:2.4 100% |  86.3 MiB/s | 265.1 KiB |  00m00s
[ 81/117] Installing perl-threads-share 100% |  76.1 MiB/s | 233.8 KiB |  00m00s
[ 82/117] Installing perl-Thread-Queue- 100% |  29.7 MiB/s |  30.4 KiB |  00m00s
[ 83/117] Installing perl-ExtUtils-Comm 100% |   9.9 MiB/s |  10.2 KiB |  00m00s
[ 84/117] Installing perl-ExtUtils-Mani 100% |  42.2 MiB/s |  86.3 KiB |  00m00s
[ 85/117] Installing perl-Devel-PPPort- 100% | 113.6 MiB/s |   1.0 MiB |  00m00s
[ 86/117] Installing perl-ExtUtils-Cons 100% |  42.8 MiB/s |  87.6 KiB |  00m00s
[ 87/117] Installing perl-AutoSplit-0:5 100% |  23.0 MiB/s |  23.5 KiB |  00m00s
[ 88/117] Installing perl-lib-0:0.65-51 100% |   8.7 MiB/s |   8.9 KiB |  00m00s
[ 89/117] Installing perl-version-9:0.9 100% |  71.1 MiB/s | 291.4 KiB |  00m00s
[ 90/117] Installing perl-Benchmark-0:1 100% |  35.9 MiB/s |  36.7 KiB |  00m00s
[ 91/117] Installing perl-Test-Harness- 100% |  23.7 MiB/s | 582.4 KiB |  00m00s
[ 92/117] Installing perl-ExtUtils-Inst 100% |  42.6 MiB/s |  87.2 KiB |  00m00s
[ 93/117] Installing perl-ExtUtils-Make 100% |  72.7 MiB/s | 744.8 KiB |  00m00s
[ 94/117] Installing m4-0:1.4.19-10.fc4 100% |   7.3 MiB/s | 739.0 KiB |  00m00s
[ 95/117] Installing emacs-filesystem-1 100% | 531.2 KiB/s | 544.0   B |  00m00s
[ 96/117] Installing autoconf-0:2.72-3. 100% | 127.2 MiB/s |   2.8 MiB |  00m00s
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[ 98/117] Installing systemtap-sdt-deve 100% |  29.9 MiB/s | 183.8 KiB |  00m00s
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[102/117] Installing perl-devel-4:5.40. 100% | 149.1 MiB/s |   8.1 MiB |  00m00s
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warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead
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Warning: skipped PGP checks for 1 package from repository: copr_base
Complete!
Finish: build setup for bcftools-1.15.1-10.fc42.src.rpm
Start: rpmbuild bcftools-1.15.1-10.fc42.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1721174400
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.aOBr1a
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ test -d /builddir/build/BUILD/bcftools-1.15.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.15.1-build
+ /usr/bin/rm -rf /builddir/build/BUILD/bcftools-1.15.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.15.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.15.1-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.50EjGX
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ rm -rf bcftools-1.15.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.15.1.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.15.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (bcftools-1.15.1-aarch64-fix-vcf_plugin-tests.patch):
+ echo 'Patch #0 (bcftools-1.15.1-aarch64-fix-vcf_plugin-tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file plugins/fill-tags.c
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ZaGaTp
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.15.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
--- ./htslib-1.15.1/configure.backup	2022-04-07 15:42:52.000000000 +0000
+++ ./htslib-1.15.1/configure	2024-09-25 16:28:48.643738838 +0000
@@ -1697,7 +1697,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=ppc64le-redhat-linux --host=ppc64le-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for ppc64le-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j5 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.15.1"' > version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tabix.o tabix.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfindex.o vcfindex.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfquery.o vcfquery.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfisec.o vcfisec.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcffilter.o vcffilter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsom.o vcfsom.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfstats.o vcfstats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfgtcheck.o vcfgtcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfview.o vcfview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfroh.o vcfroh.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfnorm.o vcfnorm.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconcat.o vcfconcat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfmerge.o vcfmerge.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcmp.o vcmp.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcall.o vcfcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gvcf.o gvcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib64/perl5/CORE  -c -o filter.o filter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfannotate.o vcfannotate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tsv2vcf.o tsv2vcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mcall.o mcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o reheader.o reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfhead.o vcfhead.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o HMM.o HMM.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcnv.o vcfcnv.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconvert.o vcfconvert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bin.o bin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o version.o version.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o hclust.o hclust.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ploidy.o ploidy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o smpl_ilist.o smpl_ilist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o consensus.o consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o regidx.o regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o convert.o convert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfbuf.o vcfbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup.o mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o cols.o cols.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsort.o vcfsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam_sample.o bam_sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o dist.o dist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o extsort.o extsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o em.o em.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ccall.o ccall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o str_finder.o str_finder.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o kmin.o kmin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o prob1.o prob1.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o peakfit.o peakfit.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-rbuf.o test/test-rbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o abuf.o abuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o polysomy.o polysomy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-regidx.o test/test-regidx.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/GTsubset.so version.c plugins/GTsubset.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/GTisec.so version.c plugins/GTisec.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/allele-length.so version.c plugins/allele-length.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o csq.o csq.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/counts.so version.c plugins/counts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/contrast.so version.c plugins/contrast.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/dosage.so version.c plugins/dosage.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/fixref.so version.c plugins/fixref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/frameshifts.so version.c plugins/frameshifts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/fill-tags.so version.c plugins/fill-tags.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/impute-info.so version.c plugins/impute-info.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/gvcfz.so version.c plugins/gvcfz.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/missing2ref.so version.c plugins/missing2ref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/indel-stats.so version.c plugins/indel-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/mendelian.so version.c plugins/mendelian.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/parental-origin.so version.c plugins/parental-origin.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/prune.so version.c plugins/prune.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/scatter.so version.c plugins/scatter.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/setGT.so version.c plugins/setGT.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/tag2tag.so version.c plugins/tag2tag.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/split.so version.c plugins/split.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/split-vep.so version.c plugins/split-vep.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/trio-stats.so version.c plugins/trio-stats.c 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/test-rbuf test/test-rbuf.o -lz  
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DUSE_GPL -c -o main.o main.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/trio-dnm2.so version.c plugins/trio-dnm2.c 
gcc  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib64/perl5/CORE  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
gcc -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1  -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1  -fstack-protector-strong -L/usr/local/lib  -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.CeCYV9
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ '[' /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.15.1-build
+ mkdir /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/run-roh.pl misc/vcfutils.pl /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.15.1-10.fc42 --unique-debug-suffix -1.15.1-10.fc42.ppc64le --unique-debug-src-base bcftools-1.15.1-10.fc42.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1
find-debuginfo: starting
Extracting debug info from 39 files
DWARF-compressing 39 files
sepdebugcrcfix: Updated 39 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.15.1-10.fc42.ppc64le
5400 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
Scanned 19 directories and 208 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/bcftools-1.15.1-build/SPECPARTS/rpm-debuginfo.specpart
+ /usr/bin/add-determinism --brp -j5 /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.OeuRq1
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.15.1
+ ldd bcftools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fff90ef0000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
test_usage:
	bcftools
./test/test.pl: module IO::Pty not found; skipping usage tests
test_tabix:
	tabix /tmp/MRsIiV9Kal/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/MRsIiV9Kal/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H /tmp/MRsIiV9Kal/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -s /tmp/MRsIiV9Kal/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -s /tmp/MRsIiV9Kal/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -s /tmp/MRsIiV9Kal/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -s /tmp/MRsIiV9Kal/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -s /tmp/MRsIiV9Kal/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -s /tmp/MRsIiV9Kal/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools index -n /tmp/MRsIiV9Kal/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools stats -s - /tmp/MRsIiV9Kal/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/misc/plot-vcfstats -m /tmp/MRsIiV9Kal/check.1.chk /tmp/MRsIiV9Kal/check.2.chk /tmp/MRsIiV9Kal/check.3.chk /tmp/MRsIiV9Kal/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools stats -s -  /tmp/MRsIiV9Kal/stats.a.vcf.gz /tmp/MRsIiV9Kal/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools stats -s B  /tmp/MRsIiV9Kal/stats.a.vcf.gz /tmp/MRsIiV9Kal/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools stats -s -  /tmp/MRsIiV9Kal/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -n =2 /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -n =2 /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -n =2 -i"STRLEN(REF)==2" /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -n =2 -c both /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -n =2 -c both /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -n =2 -c any /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -n =2 -c any /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -C -c any /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -C -c any /tmp/MRsIiV9Kal/isec.a.vcf.gz /tmp/MRsIiV9Kal/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec --no-version   -T /tmp/MRsIiV9Kal/isec.tab.gz /tmp/MRsIiV9Kal/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob  -T /tmp/MRsIiV9Kal/isec.tab.gz /tmp/MRsIiV9Kal/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/MRsIiV9Kal/isec-miss.1.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/MRsIiV9Kal/isec-miss.1.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/MRsIiV9Kal/isec-miss.1.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/MRsIiV9Kal/isec-miss.1.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/MRsIiV9Kal/isec-miss.2.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/MRsIiV9Kal/isec-miss.2.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/MRsIiV9Kal/isec-miss.2.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools isec -Ob -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/MRsIiV9Kal/isec-miss.2.1.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.2.vcf.gz /tmp/MRsIiV9Kal/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -i AF:join /tmp/MRsIiV9Kal/merge.join.a.vcf.gz /tmp/MRsIiV9Kal/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -i AF:join /tmp/MRsIiV9Kal/merge.join.a.vcf.gz /tmp/MRsIiV9Kal/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -i AF:join /tmp/MRsIiV9Kal/merge.join.a.bcf /tmp/MRsIiV9Kal/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -i AF:join /tmp/MRsIiV9Kal/merge.join.a.bcf /tmp/MRsIiV9Kal/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 1 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 1 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 1 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 1 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 2 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 2 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 2 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 2 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 3 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 3 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 3 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 3 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 4 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 4 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 4 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 4 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 5 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 5 /tmp/MRsIiV9Kal/merge.LPL.a.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.b.vcf.gz /tmp/MRsIiV9Kal/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 5 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 5 /tmp/MRsIiV9Kal/merge.LPL.a.bcf /tmp/MRsIiV9Kal/merge.LPL.b.bcf /tmp/MRsIiV9Kal/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/MRsIiV9Kal/merge.a.vcf.gz /tmp/MRsIiV9Kal/merge.b.vcf.gz /tmp/MRsIiV9Kal/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/MRsIiV9Kal/merge.a.vcf.gz /tmp/MRsIiV9Kal/merge.b.vcf.gz /tmp/MRsIiV9Kal/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/MRsIiV9Kal/merge.a.bcf /tmp/MRsIiV9Kal/merge.b.bcf /tmp/MRsIiV9Kal/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/MRsIiV9Kal/merge.a.bcf /tmp/MRsIiV9Kal/merge.b.bcf /tmp/MRsIiV9Kal/merge.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -Fx /tmp/MRsIiV9Kal/merge.a.vcf.gz /tmp/MRsIiV9Kal/merge.b.vcf.gz /tmp/MRsIiV9Kal/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -Fx /tmp/MRsIiV9Kal/merge.a.vcf.gz /tmp/MRsIiV9Kal/merge.b.vcf.gz /tmp/MRsIiV9Kal/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -Fx /tmp/MRsIiV9Kal/merge.a.bcf /tmp/MRsIiV9Kal/merge.b.bcf /tmp/MRsIiV9Kal/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -Fx /tmp/MRsIiV9Kal/merge.a.bcf /tmp/MRsIiV9Kal/merge.b.bcf /tmp/MRsIiV9Kal/merge.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -0 /tmp/MRsIiV9Kal/merge.a.vcf.gz /tmp/MRsIiV9Kal/merge.b.vcf.gz /tmp/MRsIiV9Kal/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -0 /tmp/MRsIiV9Kal/merge.a.vcf.gz /tmp/MRsIiV9Kal/merge.b.vcf.gz /tmp/MRsIiV9Kal/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -0 /tmp/MRsIiV9Kal/merge.a.bcf /tmp/MRsIiV9Kal/merge.b.bcf /tmp/MRsIiV9Kal/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -0 /tmp/MRsIiV9Kal/merge.a.bcf /tmp/MRsIiV9Kal/merge.b.bcf /tmp/MRsIiV9Kal/merge.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m none /tmp/MRsIiV9Kal/merge.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m none /tmp/MRsIiV9Kal/merge.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m none /tmp/MRsIiV9Kal/merge.2.a.bcf /tmp/MRsIiV9Kal/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m none /tmp/MRsIiV9Kal/merge.2.a.bcf /tmp/MRsIiV9Kal/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m both /tmp/MRsIiV9Kal/merge.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m both /tmp/MRsIiV9Kal/merge.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m both /tmp/MRsIiV9Kal/merge.2.a.bcf /tmp/MRsIiV9Kal/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m both /tmp/MRsIiV9Kal/merge.2.a.bcf /tmp/MRsIiV9Kal/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m all /tmp/MRsIiV9Kal/merge.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m all /tmp/MRsIiV9Kal/merge.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m all /tmp/MRsIiV9Kal/merge.2.a.bcf /tmp/MRsIiV9Kal/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m all /tmp/MRsIiV9Kal/merge.2.a.bcf /tmp/MRsIiV9Kal/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/MRsIiV9Kal/merge.3.a.vcf.gz /tmp/MRsIiV9Kal/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/MRsIiV9Kal/merge.3.a.vcf.gz /tmp/MRsIiV9Kal/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/MRsIiV9Kal/merge.3.a.bcf /tmp/MRsIiV9Kal/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/MRsIiV9Kal/merge.3.a.bcf /tmp/MRsIiV9Kal/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m id /tmp/MRsIiV9Kal/merge.4.a.vcf.gz /tmp/MRsIiV9Kal/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m id /tmp/MRsIiV9Kal/merge.4.a.vcf.gz /tmp/MRsIiV9Kal/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples -m id /tmp/MRsIiV9Kal/merge.4.a.bcf /tmp/MRsIiV9Kal/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples -m id /tmp/MRsIiV9Kal/merge.4.a.bcf /tmp/MRsIiV9Kal/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/gvcf.merge.1.vcf.gz /tmp/MRsIiV9Kal/gvcf.merge.2.vcf.gz /tmp/MRsIiV9Kal/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/gvcf.merge.1.vcf.gz /tmp/MRsIiV9Kal/gvcf.merge.2.vcf.gz /tmp/MRsIiV9Kal/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/gvcf.merge.1.bcf /tmp/MRsIiV9Kal/gvcf.merge.2.bcf /tmp/MRsIiV9Kal/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/gvcf.merge.1.bcf /tmp/MRsIiV9Kal/gvcf.merge.2.bcf /tmp/MRsIiV9Kal/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.2.b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.2.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.2.b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - -i SRC:join /tmp/MRsIiV9Kal/merge.gvcf.3.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - -i SRC:join /tmp/MRsIiV9Kal/merge.gvcf.3.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.4.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.4.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.4.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.4.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.5.a.vcf.gz /tmp/MRsIiV9Kal/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.5.a.vcf.gz /tmp/MRsIiV9Kal/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.5.a.bcf /tmp/MRsIiV9Kal/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.5.a.bcf /tmp/MRsIiV9Kal/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.6.a.vcf.gz /tmp/MRsIiV9Kal/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.6.a.vcf.gz /tmp/MRsIiV9Kal/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.6.a.bcf /tmp/MRsIiV9Kal/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.6.a.bcf /tmp/MRsIiV9Kal/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.7.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.7.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.7.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.7.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.8.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.8.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.8.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/MRsIiV9Kal/merge.gvcf.8.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/MRsIiV9Kal/merge.7.a.vcf.gz /tmp/MRsIiV9Kal/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/MRsIiV9Kal/merge.7.a.vcf.gz /tmp/MRsIiV9Kal/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/MRsIiV9Kal/merge.7.a.bcf /tmp/MRsIiV9Kal/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/MRsIiV9Kal/merge.7.a.bcf /tmp/MRsIiV9Kal/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf /tmp/MRsIiV9Kal/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf /tmp/MRsIiV9Kal/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9c.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9d.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf /tmp/MRsIiV9Kal/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/MRsIiV9Kal/merge.gvcf.9a.bcf /tmp/MRsIiV9Kal/merge.gvcf.9b.bcf /tmp/MRsIiV9Kal/merge.gvcf.9c.bcf /tmp/MRsIiV9Kal/merge.gvcf.9d.bcf /tmp/MRsIiV9Kal/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.b.vcf.gz /tmp/MRsIiV9Kal/merge.gvcf.10.a.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/MRsIiV9Kal/merge.gvcf.10.b.bcf /tmp/MRsIiV9Kal/merge.gvcf.10.a.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.noidx.a.vcf.gz /tmp/MRsIiV9Kal/merge.noidx.b.vcf.gz /tmp/MRsIiV9Kal/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.noidx.a.vcf.gz /tmp/MRsIiV9Kal/merge.noidx.b.vcf.gz /tmp/MRsIiV9Kal/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.noidx.a.bcf /tmp/MRsIiV9Kal/merge.noidx.b.bcf /tmp/MRsIiV9Kal/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.noidx.a.bcf /tmp/MRsIiV9Kal/merge.noidx.b.bcf /tmp/MRsIiV9Kal/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --no-index /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version --no-index /tmp/MRsIiV9Kal/merge.noidx.a.bcf /tmp/MRsIiV9Kal/merge.noidx.b.bcf /tmp/MRsIiV9Kal/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob --no-index /tmp/MRsIiV9Kal/merge.noidx.a.bcf /tmp/MRsIiV9Kal/merge.noidx.b.bcf /tmp/MRsIiV9Kal/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.8.a.vcf.gz /tmp/MRsIiV9Kal/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.8.a.vcf.gz /tmp/MRsIiV9Kal/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.8.a.bcf /tmp/MRsIiV9Kal/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.8.a.bcf /tmp/MRsIiV9Kal/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.8.a.vcf.gz /tmp/MRsIiV9Kal/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.8.a.vcf.gz /tmp/MRsIiV9Kal/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.8.a.bcf /tmp/MRsIiV9Kal/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.8.a.bcf /tmp/MRsIiV9Kal/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.9.a.vcf.gz /tmp/MRsIiV9Kal/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.9.a.vcf.gz /tmp/MRsIiV9Kal/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version  /tmp/MRsIiV9Kal/merge.9.a.bcf /tmp/MRsIiV9Kal/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob  /tmp/MRsIiV9Kal/merge.9.a.bcf /tmp/MRsIiV9Kal/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.9.a.vcf.gz /tmp/MRsIiV9Kal/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.9.a.vcf.gz /tmp/MRsIiV9Kal/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.9.a.bcf /tmp/MRsIiV9Kal/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/MRsIiV9Kal/merge.9.a.bcf /tmp/MRsIiV9Kal/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/MRsIiV9Kal/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/MRsIiV9Kal/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/MRsIiV9Kal/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%RSX\t%VKX\n' /tmp/MRsIiV9Kal/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/MRsIiV9Kal/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/MRsIiV9Kal/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/MRsIiV9Kal/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/MRsIiV9Kal/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/MRsIiV9Kal/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/MRsIiV9Kal/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/MRsIiV9Kal/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/MRsIiV9Kal/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/MRsIiV9Kal/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/MRsIiV9Kal/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%LINE' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/MRsIiV9Kal/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/MRsIiV9Kal/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/MRsIiV9Kal/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/MRsIiV9Kal/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/MRsIiV9Kal/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/MRsIiV9Kal/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/MRsIiV9Kal/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/MRsIiV9Kal/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/MRsIiV9Kal/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/MRsIiV9Kal/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/MRsIiV9Kal/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/MRsIiV9Kal/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/MRsIiV9Kal/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/MRsIiV9Kal/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/MRsIiV9Kal/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/MRsIiV9Kal/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/MRsIiV9Kal/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.56.out' /tmp/MRsIiV9Kal/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/view.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/MRsIiV9Kal/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/MRsIiV9Kal/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/MRsIiV9Kal/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/MRsIiV9Kal/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/MRsIiV9Kal/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/MRsIiV9Kal/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/MRsIiV9Kal/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/MRsIiV9Kal/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/MRsIiV9Kal/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/MRsIiV9Kal/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/MRsIiV9Kal/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/MRsIiV9Kal/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/MRsIiV9Kal/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/MRsIiV9Kal/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/MRsIiV9Kal/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/MRsIiV9Kal/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/MRsIiV9Kal/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/MRsIiV9Kal/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/MRsIiV9Kal/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/MRsIiV9Kal/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/MRsIiV9Kal/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/MRsIiV9Kal/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/MRsIiV9Kal/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/MRsIiV9Kal/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt /tmp/MRsIiV9Kal/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt /tmp/MRsIiV9Kal/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt /tmp/MRsIiV9Kal/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt /tmp/MRsIiV9Kal/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.txt /tmp/MRsIiV9Kal/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.txt /tmp/MRsIiV9Kal/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/MRsIiV9Kal/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/MRsIiV9Kal/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -cx -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -cx -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m- /tmp/MRsIiV9Kal/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m- /tmp/MRsIiV9Kal/norm.split.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m- /tmp/MRsIiV9Kal/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m- /tmp/MRsIiV9Kal/norm.split.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m- --force /tmp/MRsIiV9Kal/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m- --force /tmp/MRsIiV9Kal/norm.split.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m- /tmp/MRsIiV9Kal/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m- /tmp/MRsIiV9Kal/norm.split.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m- --keep-sum AD /tmp/MRsIiV9Kal/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m- --keep-sum AD /tmp/MRsIiV9Kal/norm.split.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.split.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m+ /tmp/MRsIiV9Kal/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m+ /tmp/MRsIiV9Kal/norm.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m+ /tmp/MRsIiV9Kal/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m+ /tmp/MRsIiV9Kal/norm.merge.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m+ /tmp/MRsIiV9Kal/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m+ /tmp/MRsIiV9Kal/norm.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m+ -s /tmp/MRsIiV9Kal/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m+ -s /tmp/MRsIiV9Kal/norm.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -Nc s -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.setref.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -Nc s -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.setref.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.telomere.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa /tmp/MRsIiV9Kal/norm.telomere.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d snps /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d snps /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d indels /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d indels /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d both /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d both /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d all /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d all /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d none /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d none /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d exact /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d exact /tmp/MRsIiV9Kal/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d none /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d none /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d exact /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d exact /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d indels /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d indels /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d any /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d any /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d both /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d both /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -d snps /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -d snps /tmp/MRsIiV9Kal/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -c s -a -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.2.fa /tmp/MRsIiV9Kal/norm.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -c s -a -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.2.fa /tmp/MRsIiV9Kal/norm.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -c s -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.iupac.fa /tmp/MRsIiV9Kal/norm.iupac.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -c s -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.iupac.fa /tmp/MRsIiV9Kal/norm.iupac.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -c s -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.3.fa /tmp/MRsIiV9Kal/norm.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -c s -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.3.fa /tmp/MRsIiV9Kal/norm.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  --atomize --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  --atomize --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  --atomize --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  --atomize --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/MRsIiV9Kal/atomize.split.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  --atomize --atom-overlaps . /tmp/MRsIiV9Kal/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  --atomize --atom-overlaps . /tmp/MRsIiV9Kal/atomize.split.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m +both /tmp/MRsIiV9Kal/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m +both /tmp/MRsIiV9Kal/norm.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm --no-version  -m +any /tmp/MRsIiV9Kal/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools norm -Ob  -m +any /tmp/MRsIiV9Kal/norm.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -f PASS -Xks NA00003 /tmp/MRsIiV9Kal/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -f PASS -Xks NA00003 /tmp/MRsIiV9Kal/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -xs NA00003 /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -xs NA00003 /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -p /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -p /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -P /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -P /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -Hu /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -GVsnps /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -GVsnps /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -s ^NA00003 /tmp/MRsIiV9Kal/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -s ^NA00003 /tmp/MRsIiV9Kal/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version  /tmp/MRsIiV9Kal/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob  /tmp/MRsIiV9Kal/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -G /tmp/MRsIiV9Kal/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -G /tmp/MRsIiV9Kal/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -HG /tmp/MRsIiV9Kal/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -a /tmp/MRsIiV9Kal/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -a /tmp/MRsIiV9Kal/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -asA /tmp/MRsIiV9Kal/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -asA /tmp/MRsIiV9Kal/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -asB /tmp/MRsIiV9Kal/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -asB /tmp/MRsIiV9Kal/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -asA /tmp/MRsIiV9Kal/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -asA /tmp/MRsIiV9Kal/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/MRsIiV9Kal/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/MRsIiV9Kal/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/MRsIiV9Kal/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/MRsIiV9Kal/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i'TXT0="text"' /tmp/MRsIiV9Kal/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.chrs.tab /tmp/MRsIiV9Kal/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.chrs.tab /tmp/MRsIiV9Kal/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -i 'POS>=3062917' /tmp/MRsIiV9Kal/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -i 'POS>=3062917' /tmp/MRsIiV9Kal/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/MRsIiV9Kal/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/MRsIiV9Kal/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/idx.2.bed /tmp/MRsIiV9Kal/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/idx.3.bed /tmp/MRsIiV9Kal/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/idx.4.bed /tmp/MRsIiV9Kal/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -Ht 2 /tmp/MRsIiV9Kal/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -Ht 3 /tmp/MRsIiV9Kal/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/MRsIiV9Kal/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -C5:nonmajor /tmp/MRsIiV9Kal/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -c6:nonmajor /tmp/MRsIiV9Kal/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -q0.3:major /tmp/MRsIiV9Kal/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/MRsIiV9Kal/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/MRsIiV9Kal/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/MRsIiV9Kal/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -H -a /tmp/MRsIiV9Kal/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.sites.txt /tmp/MRsIiV9Kal/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.sites.txt /tmp/MRsIiV9Kal/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.sites.txt.gz /tmp/MRsIiV9Kal/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.sites.txt.gz /tmp/MRsIiV9Kal/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/MRsIiV9Kal/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/regions.tab /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/regions.tab /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/MRsIiV9Kal/regions.tab.gz /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/MRsIiV9Kal/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/MRsIiV9Kal/regions.tab.gz /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/MRsIiV9Kal/regions.bed /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/MRsIiV9Kal/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/MRsIiV9Kal/regions.bed /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/MRsIiV9Kal/regions.bed.gz /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/MRsIiV9Kal/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/MRsIiV9Kal/regions.bed.gz /tmp/MRsIiV9Kal/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/MRsIiV9Kal/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/MRsIiV9Kal/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots4.vcf.gz  -c +INFO /tmp/MRsIiV9Kal/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots4.vcf.gz  -c +INFO /tmp/MRsIiV9Kal/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots11.vcf.gz  -c FMT /tmp/MRsIiV9Kal/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots11.vcf.gz  -c FMT /tmp/MRsIiV9Kal/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/MRsIiV9Kal/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/MRsIiV9Kal/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/MRsIiV9Kal/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/MRsIiV9Kal/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/MRsIiV9Kal/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate20.src.vcf.gz  -c  FMT/GT /tmp/MRsIiV9Kal/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate20.src.vcf.gz  -c  FMT/GT /tmp/MRsIiV9Kal/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate20.src.vcf.gz  -c +FMT/GT /tmp/MRsIiV9Kal/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate20.src.vcf.gz  -c +FMT/GT /tmp/MRsIiV9Kal/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate20.src.vcf.gz  -c -FMT/GT /tmp/MRsIiV9Kal/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate20.src.vcf.gz  -c -FMT/GT /tmp/MRsIiV9Kal/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate21.txt /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate21.txt /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/MRsIiV9Kal/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/MRsIiV9Kal/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate24.src.vcf.gz  -c XX /tmp/MRsIiV9Kal/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate24.src.vcf.gz  -c XX /tmp/MRsIiV9Kal/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate26.tab.gz  -c CHROM,POS,~POS /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate26.tab.gz  -c CHROM,POS,~POS /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots.id.vcf.gz  -c ALT /tmp/MRsIiV9Kal/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots.id.vcf.gz  -c ALT /tmp/MRsIiV9Kal/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -a /tmp/MRsIiV9Kal/annots.id.vcf.gz  -c +ALT /tmp/MRsIiV9Kal/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/MRsIiV9Kal/annots.id.vcf.gz  -c +ALT /tmp/MRsIiV9Kal/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/MRsIiV9Kal/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/MRsIiV9Kal/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/MRsIiV9Kal/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/MRsIiV9Kal/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/MRsIiV9Kal/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/MRsIiV9Kal/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +missing2ref --no-version /tmp/MRsIiV9Kal/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +missing2ref --no-version /tmp/MRsIiV9Kal/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +setGT --no-version /tmp/MRsIiV9Kal/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-AN-AC --no-version /tmp/MRsIiV9Kal/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-AN-AC --no-version /tmp/MRsIiV9Kal/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +dosage /tmp/MRsIiV9Kal/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +dosage /tmp/MRsIiV9Kal/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +dosage /tmp/MRsIiV9Kal/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +dosage /tmp/MRsIiV9Kal/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +dosage /tmp/MRsIiV9Kal/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +dosage /tmp/MRsIiV9Kal/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixploidy --no-version /tmp/MRsIiV9Kal/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixploidy --no-version /tmp/MRsIiV9Kal/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +guess-ploidy /tmp/MRsIiV9Kal/view.PL.vcf.gz -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +guess-ploidy /tmp/MRsIiV9Kal/view.PL.bcf -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +guess-ploidy /tmp/MRsIiV9Kal/view.GL.vcf.gz -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +guess-ploidy /tmp/MRsIiV9Kal/view.GL.bcf -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/MRsIiV9Kal/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/MRsIiV9Kal/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/MRsIiV9Kal/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/MRsIiV9Kal/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +add-variantkey /tmp/MRsIiV9Kal/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +add-variantkey /tmp/MRsIiV9Kal/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +variantkey-hex /tmp/MRsIiV9Kal/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +variantkey-hex /tmp/MRsIiV9Kal/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +allele-length /tmp/MRsIiV9Kal/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +allele-length /tmp/MRsIiV9Kal/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/MRsIiV9Kal/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTisec /tmp/MRsIiV9Kal/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-switch-rate /tmp/MRsIiV9Kal/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-switch-rate /tmp/MRsIiV9Kal/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-stats /tmp/MRsIiV9Kal/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-stats /tmp/MRsIiV9Kal/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-stats /tmp/MRsIiV9Kal/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-stats /tmp/MRsIiV9Kal/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +smpl-stats /tmp/MRsIiV9Kal/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +smpl-stats /tmp/MRsIiV9Kal/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +indel-stats /tmp/MRsIiV9Kal/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +indel-stats /tmp/MRsIiV9Kal/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +indel-stats /tmp/MRsIiV9Kal/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +indel-stats /tmp/MRsIiV9Kal/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +indel-stats /tmp/MRsIiV9Kal/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +indel-stats /tmp/MRsIiV9Kal/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +ad-bias /tmp/MRsIiV9Kal/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +af-dist /tmp/MRsIiV9Kal/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +af-dist /tmp/MRsIiV9Kal/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -i /tmp/MRsIiV9Kal/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -i /tmp/MRsIiV9Kal/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fixref /tmp/MRsIiV9Kal/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/MRsIiV9Kal/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/MRsIiV9Kal/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/MRsIiV9Kal/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/MRsIiV9Kal/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/MRsIiV9Kal/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/MRsIiV9Kal/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/MRsIiV9Kal/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/MRsIiV9Kal/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/MRsIiV9Kal/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/MRsIiV9Kal/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/MRsIiV9Kal/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/MRsIiV9Kal/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.vcf.gz -t mom1,dad1,child1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.bcf -t mom1,dad1,child1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.vcf.gz -t mom1,dad1,child1 -m+ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.bcf -t mom1,dad1,child1 -m+ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.vcf.gz -t mom1,dad1,child1 -mx | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.bcf -t mom1,dad1,child1 -mx | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.vcf.gz -t mom1,dad1,child1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.bcf -t mom1,dad1,child1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.vcf.gz -t mom1,dad1,child1 -mu | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +mendelian /tmp/MRsIiV9Kal/mendelian.bcf -t mom1,dad1,child1 -mu | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +contrast /tmp/MRsIiV9Kal/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.5.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.6.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.7.bcf -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.8.bcf -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/MRsIiV9Kal/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +gvcfz /tmp/MRsIiV9Kal/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +gvcfz /tmp/MRsIiV9Kal/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +gvcfz /tmp/MRsIiV9Kal/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +gvcfz /tmp/MRsIiV9Kal/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +gvcfz /tmp/MRsIiV9Kal/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +gvcfz /tmp/MRsIiV9Kal/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +remove-overlaps /tmp/MRsIiV9Kal/remove-overlaps.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +remove-overlaps /tmp/MRsIiV9Kal/remove-overlaps.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +remove-overlaps /tmp/MRsIiV9Kal/remove-overlaps.vcf.gz -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +remove-overlaps /tmp/MRsIiV9Kal/remove-overlaps.bcf -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split-vep /tmp/MRsIiV9Kal/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +parental-origin /tmp/MRsIiV9Kal/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/MRsIiV9Kal/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/MRsIiV9Kal/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N 1st /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N 1st /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/MRsIiV9Kal/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/MRsIiV9Kal/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.1   && cd /tmp/MRsIiV9Kal/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.2 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.smpl.1.2.txt  && cd /tmp/MRsIiV9Kal/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.3 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.smpl.1.3.txt  && cd /tmp/MRsIiV9Kal/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.4 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/MRsIiV9Kal/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.5 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/MRsIiV9Kal/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.6 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/MRsIiV9Kal/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.1.vcf -o /tmp/MRsIiV9Kal/split.1.7 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.grp.1.1.txt  && cd /tmp/MRsIiV9Kal/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/split.2.vcf -o /tmp/MRsIiV9Kal/split.2.1   && cd /tmp/MRsIiV9Kal/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +scatter /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/scatter.1.vcf -o /tmp/MRsIiV9Kal/scatter.1.1 -n 3 && cd /tmp/MRsIiV9Kal/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +scatter /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/scatter.1.vcf -o /tmp/MRsIiV9Kal/scatter.1.2 -s 21,22 && cd /tmp/MRsIiV9Kal/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools +scatter /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/scatter.1.vcf -o /tmp/MRsIiV9Kal/scatter.1.3 -s 21,22 -x X && cd /tmp/MRsIiV9Kal/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version   /tmp/MRsIiV9Kal/concat.1.a.vcf.gz /tmp/MRsIiV9Kal/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob   /tmp/MRsIiV9Kal/concat.1.a.vcf.gz /tmp/MRsIiV9Kal/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version   /tmp/MRsIiV9Kal/concat.1.a.bcf /tmp/MRsIiV9Kal/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob   /tmp/MRsIiV9Kal/concat.1.a.bcf /tmp/MRsIiV9Kal/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -a  /tmp/MRsIiV9Kal/concat.2.a.vcf.gz /tmp/MRsIiV9Kal/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -a  /tmp/MRsIiV9Kal/concat.2.a.vcf.gz /tmp/MRsIiV9Kal/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -a  /tmp/MRsIiV9Kal/concat.2.a.bcf /tmp/MRsIiV9Kal/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -a  /tmp/MRsIiV9Kal/concat.2.a.bcf /tmp/MRsIiV9Kal/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -aD  /tmp/MRsIiV9Kal/concat.2.a.vcf.gz /tmp/MRsIiV9Kal/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -aD  /tmp/MRsIiV9Kal/concat.2.a.vcf.gz /tmp/MRsIiV9Kal/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -aD  /tmp/MRsIiV9Kal/concat.2.a.bcf /tmp/MRsIiV9Kal/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -aD  /tmp/MRsIiV9Kal/concat.2.a.bcf /tmp/MRsIiV9Kal/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/MRsIiV9Kal/concat.3.a.vcf.gz /tmp/MRsIiV9Kal/concat.3.b.vcf.gz /tmp/MRsIiV9Kal/concat.3.0.vcf.gz /tmp/MRsIiV9Kal/concat.3.c.vcf.gz /tmp/MRsIiV9Kal/concat.3.d.vcf.gz /tmp/MRsIiV9Kal/concat.3.e.vcf.gz /tmp/MRsIiV9Kal/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/MRsIiV9Kal/concat.3.a.vcf.gz /tmp/MRsIiV9Kal/concat.3.b.vcf.gz /tmp/MRsIiV9Kal/concat.3.0.vcf.gz /tmp/MRsIiV9Kal/concat.3.c.vcf.gz /tmp/MRsIiV9Kal/concat.3.d.vcf.gz /tmp/MRsIiV9Kal/concat.3.e.vcf.gz /tmp/MRsIiV9Kal/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/MRsIiV9Kal/concat.3.a.bcf /tmp/MRsIiV9Kal/concat.3.b.bcf /tmp/MRsIiV9Kal/concat.3.0.bcf /tmp/MRsIiV9Kal/concat.3.c.bcf /tmp/MRsIiV9Kal/concat.3.d.bcf /tmp/MRsIiV9Kal/concat.3.e.bcf /tmp/MRsIiV9Kal/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/MRsIiV9Kal/concat.3.a.bcf /tmp/MRsIiV9Kal/concat.3.b.bcf /tmp/MRsIiV9Kal/concat.3.0.bcf /tmp/MRsIiV9Kal/concat.3.c.bcf /tmp/MRsIiV9Kal/concat.3.d.bcf /tmp/MRsIiV9Kal/concat.3.e.bcf /tmp/MRsIiV9Kal/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 2977397846
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --naive-force /tmp/MRsIiV9Kal/naive_concat.0.bcf /tmp/MRsIiV9Kal/naive_concat.1.bcf /tmp/MRsIiV9Kal/naive_concat.2.bcf /tmp/MRsIiV9Kal/naive_concat.3.bcf /tmp/MRsIiV9Kal/naive_concat.4.bcf /tmp/MRsIiV9Kal/naive_concat.5.bcf /tmp/MRsIiV9Kal/naive_concat.6.bcf /tmp/MRsIiV9Kal/naive_concat.7.bcf /tmp/MRsIiV9Kal/naive_concat.8.bcf /tmp/MRsIiV9Kal/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --naive /tmp/MRsIiV9Kal/naive_concat.0.vcf.gz /tmp/MRsIiV9Kal/naive_concat.1.vcf.gz /tmp/MRsIiV9Kal/naive_concat.2.vcf.gz /tmp/MRsIiV9Kal/naive_concat.3.vcf.gz /tmp/MRsIiV9Kal/naive_concat.4.vcf.gz /tmp/MRsIiV9Kal/naive_concat.5.vcf.gz /tmp/MRsIiV9Kal/naive_concat.6.vcf.gz /tmp/MRsIiV9Kal/naive_concat.7.vcf.gz /tmp/MRsIiV9Kal/naive_concat.8.vcf.gz /tmp/MRsIiV9Kal/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l  /tmp/MRsIiV9Kal/concat.4.a.vcf.gz /tmp/MRsIiV9Kal/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l  /tmp/MRsIiV9Kal/concat.4.a.vcf.gz /tmp/MRsIiV9Kal/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l  /tmp/MRsIiV9Kal/concat.4.a.bcf /tmp/MRsIiV9Kal/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l  /tmp/MRsIiV9Kal/concat.4.a.bcf /tmp/MRsIiV9Kal/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/MRsIiV9Kal/concat.5.a.vcf.gz /tmp/MRsIiV9Kal/concat.5.b.vcf.gz /tmp/MRsIiV9Kal/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/MRsIiV9Kal/concat.5.a.vcf.gz /tmp/MRsIiV9Kal/concat.5.b.vcf.gz /tmp/MRsIiV9Kal/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/MRsIiV9Kal/concat.5.a.bcf /tmp/MRsIiV9Kal/concat.5.b.bcf /tmp/MRsIiV9Kal/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/MRsIiV9Kal/concat.5.a.bcf /tmp/MRsIiV9Kal/concat.5.b.bcf /tmp/MRsIiV9Kal/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat --no-version -l --ligate-force  /tmp/MRsIiV9Kal/concat.5.a.bcf /tmp/MRsIiV9Kal/concat.5.b.bcf /tmp/MRsIiV9Kal/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools concat -Ob -l --ligate-force  /tmp/MRsIiV9Kal/concat.5.a.bcf /tmp/MRsIiV9Kal/concat.5.b.bcf /tmp/MRsIiV9Kal/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.hdr /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.hdr /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.hdr /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples2 /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples2 /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples3 /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples3 /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples4 /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples4 /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/empty.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/empty.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.empty.hdr /tmp/MRsIiV9Kal/empty.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/empty.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.empty.hdr /tmp/MRsIiV9Kal/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/MRsIiV9Kal/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.fai /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.fai /tmp/MRsIiV9Kal/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.fai /tmp/MRsIiV9Kal/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.fai /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.fai /tmp/MRsIiV9Kal/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/reheader.fai /tmp/MRsIiV9Kal/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/MRsIiV9Kal/rename.map -Ov /tmp/MRsIiV9Kal/annotate.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/MRsIiV9Kal/rename.map -Ob /tmp/MRsIiV9Kal/annotate.bcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/MRsIiV9Kal/rename.map -Ov /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/MRsIiV9Kal/rename.map -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids --3N6 /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --tag PL /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --tag PL /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids /tmp/MRsIiV9Kal/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --vcf-ids /tmp/MRsIiV9Kal/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --3N6 /tmp/MRsIiV9Kal/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --3N6 /tmp/MRsIiV9Kal/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --3N6 --vcf-ids /tmp/MRsIiV9Kal/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --3N6 --vcf-ids /tmp/MRsIiV9Kal/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h -,.,. /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h .,-,. /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h .,-,. --vcf-ids /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h .,.,- /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -H /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -H /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --haplegendsample -,.,. /tmp/MRsIiV9Kal/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample -,. /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample -,. --vcf-ids /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample .,- /tmp/MRsIiV9Kal/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa /tmp/MRsIiV9Kal/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view -Ob /tmp/MRsIiV9Kal/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/convert.23andme | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa  -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa  -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab -c /tmp/MRsIiV9Kal/consensus.1.chain.new >/dev/null; cat /tmp/MRsIiV9Kal/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab -c /tmp/MRsIiV9Kal/consensus.2.chain.new >/dev/null; cat /tmp/MRsIiV9Kal/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.tab -c /tmp/MRsIiV9Kal/consensus.3.chain.new >/dev/null; cat /tmp/MRsIiV9Kal/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -H 1  -c /tmp/MRsIiV9Kal/consensus.4.chain.new >/dev/null; cat /tmp/MRsIiV9Kal/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus2.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus6.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.12.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.13.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.14.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.12.fa --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus2.fa -M N -m /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.18.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools consensus /tmp/MRsIiV9Kal/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/consensus.19.fa   
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -b /tmp/MRsIiV9Kal/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob -b /tmp/MRsIiV9Kal/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -b /tmp/MRsIiV9Kal/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob -b /tmp/MRsIiV9Kal/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.gff3 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.chr.gff3 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.2.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,GT /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,PL /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,GT /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,PL /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -p s1,s1 /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 /tmp/MRsIiV9Kal/gtcheck.2.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0  /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gtcheck.3.pairs /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 --n-matches 4 /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -p B,C,B,D /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,GT -H /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,PL -H /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,GT -H /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,PL -H /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/MRsIiV9Kal/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/MRsIiV9Kal/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -u GT -e 30 /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -u GT -e 300 /tmp/MRsIiV9Kal/gtcheck.1.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck -u PL -e 30 /tmp/MRsIiV9Kal/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck  /tmp/MRsIiV9Kal/gtcheck.ntop.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck --n-matches 2 /tmp/MRsIiV9Kal/gtcheck.ntop.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/bcftools gtcheck  /tmp/MRsIiV9Kal/gtcheck.5.vcf.gz -g /tmp/MRsIiV9Kal/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok


Number of tests:
    total   .. 1725
    passed  .. 1725
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.15.1-10.fc42.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.XuDGNm
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ cd bcftools-1.15.1
+ DOCDIR=/builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/AUTHORS /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/NEWS /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.UaZ0Ic
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ cd bcftools-1.15.1
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.15.1-build/bcftools-1.15.1/LICENSE /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.15.1-10.fc42 bcftools(ppc-64) = 1.15.1-10.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libperl.so.5.40()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.15.1-10.fc42.ppc64le
Provides: bcftools-debugsource = 1.15.1-10.fc42 bcftools-debugsource(ppc-64) = 1.15.1-10.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.15.1-10.fc42.ppc64le
Provides: bcftools-debuginfo = 1.15.1-10.fc42 bcftools-debuginfo(ppc-64) = 1.15.1-10.fc42 debuginfo(build-id) = 112dc773c0346060eff8c2b5f8dc56adc2c83e71 debuginfo(build-id) = 1519aa18a3a90bc83b2a5b73a4e13e32fcb09d68 debuginfo(build-id) = 2994193aa97eeacb62682ccb72c2115026fd738c debuginfo(build-id) = 31d5224750c50bef3a90cf8482114682d65dd45f debuginfo(build-id) = 37644da0a5bc4718b490d6446bb09327989c0ffb debuginfo(build-id) = 389f34a8eeb1467dde1e3d32bcef2456a6f1a920 debuginfo(build-id) = 3cd4f39e865cdb179c41fd490989ede7c11c0939 debuginfo(build-id) = 3deaf632420f7edf1585f6b4c8dcc52dc02e4106 debuginfo(build-id) = 4335629b80bfeceae18ad64c589c9d7a64768250 debuginfo(build-id) = 46bd3ce6364ce803553d0598c0812c8b9eef2497 debuginfo(build-id) = 510fa5918516cd8278cea2e16435fb97140d9f9c debuginfo(build-id) = 5531d05246be41744131168c18ea1376c0e084f2 debuginfo(build-id) = 57b47698fa3065dfed0ec43847e3813fb7882e37 debuginfo(build-id) = 57cba6e94b26200330c1c6acfcc0e8d8aecf8d56 debuginfo(build-id) = 5a7d0b3d6a72059f74eb23f682fbbe5a3d04d9f9 debuginfo(build-id) = 611853de9cd52c62c941b86f40b00a3cc22975cc debuginfo(build-id) = 6f1620eeb0e55f91a8c60a62dc96c223c0ac0d84 debuginfo(build-id) = 7d469defac5935879a37fd02379f017cf3b1ccb1 debuginfo(build-id) = 89df492302eb7a3f8496a1e2498b51c13cf2fa1c debuginfo(build-id) = 8c9dc5c4d3866388619859d8c2f619399e56fc19 debuginfo(build-id) = 93817e77a11687d18bc211dabfd8e0e28840320b debuginfo(build-id) = 96b52b438d65136c0a67b001f8da314e0c3ecb01 debuginfo(build-id) = a0b3e6802560e46543bbc25e8c3c36f3a61f4632 debuginfo(build-id) = a6970fc59372cc32b20e37b04fe00aebec33157a debuginfo(build-id) = a6ffabb76e08613ea92abdd45c7d7d2f80d616e1 debuginfo(build-id) = b00c2b5711a37f1bf3ef238a4dd2f5462e024ba4 debuginfo(build-id) = bbcefc90c60fbeafcf7add57bbe9eaf288dc3ca9 debuginfo(build-id) = bf18438d4854aba04e4bd198550f9a3e60c212df debuginfo(build-id) = c1b66d3f4f437e8eda497d5db14a56e24f93e404 debuginfo(build-id) = c3c33973f57c26dc7fbbfefd62b456df37c4fc14 debuginfo(build-id) = c5c78a495824fe7ecbc5e91e9cbcaf63b58a83e7 debuginfo(build-id) = d6505602441b9547ce5d601bd390c03a0c88faa4 debuginfo(build-id) = db19a8d8afa76bfc9d71c8c1ef871e727dd26eb5 debuginfo(build-id) = dbb38caca0474fb47c0d10d8c21339f1f767d5fa debuginfo(build-id) = dca346af3c0c1a8ad63fffbad0c3339819fd1d82 debuginfo(build-id) = ec12ee31fcb48a10b1db2faed7af812222e252c9 debuginfo(build-id) = f1ef2020572d60261c64f70dc295a2fd7f29b596 debuginfo(build-id) = f50c7428a8433e80049e1d4c66fc8373709d97f3 debuginfo(build-id) = f9a3571b3e76699e5f91fba1885909c0ea073e93
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(ppc-64) = 1.15.1-10.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.15.1-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.15.1-10.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.15.1-10.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.15.1-10.fc42.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.W93H6e
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.15.1-build
+ test -d /builddir/build/BUILD/bcftools-1.15.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.15.1-build
+ rm -rf /builddir/build/BUILD/bcftools-1.15.1-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.15.1-10.fc42.src.rpm
Finish: build phase for bcftools-1.15.1-10.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1727281667.714033/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.15.1-10.fc42.src.rpm) Config(child) 1 minutes 33 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.15.1",
            "release": "10.fc42",
            "arch": "src"
        },
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.15.1",
            "release": "10.fc42",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.15.1",
            "release": "10.fc42",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.15.1",
            "release": "10.fc42",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished