%global octpkg iso2mesh Name: octave-%{octpkg} Version: 1.9.6 Release: 18%{?dist} Summary: A 3D surface and volumetric mesh generator for MATLAB/Octave # Main package: GPLv3+ # Meshfix: GPLv2+ # JMeshLib: GPLv2+ # Tetgen: AGPLv3+ # Automatically converted from old format: GPLv3+ and GPLv2+ and AGPLv3+ - review is highly recommended. License: GPL-3.0-or-later AND GPL-2.0-or-later AND AGPL-3.0-or-later URL: http://iso2mesh.sf.net # the following utilities are called internally by iso2mesh (stored under a private folder), # this is needed for making outputs reproducible Source0: https://github.com/fangq/iso2mesh/archive/v%{version}/%{octpkg}-%{version}.tar.gz Source1: https://github.com/fangq/cork/archive/v0.9.1/cork-0.9.1.tar.gz Source2: https://github.com/fangq/meshfix/archive/v1.2.2/meshfix-1.2.2.tar.gz Source3: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/tetgen1.5.1.tar.gz # Policy CMP0064 is not set: Support new TEST if() operator. # See also https://github.com/CGAL/cgal/issues/5857 Patch0: iso2mesh-1.9.6-CMakeCMP0064.patch # Fix the incorrect detection of Boost version # > -- NOTICE: This program requires Boost >= 1.34.1, and will not be compiled. Patch1: iso2mesh-1.9.6-recent_Boost_version.patch Patch2: octave-iso2mesh-c99.patch ExcludeArch: armv7hl BuildRequires: make BuildRequires: cmake CGAL-devel SuperLU-devel gcc-c++ zlib-devel octave-devel %if 0%{?fedora} >=32 Requires: octave mpfr-devel boost-devel SuperLU octave-jsonlab octave-jnifti octave-zmat %else Requires: octave CGAL SuperLU octave-jsonlab octave-jnifti octave-zmat %endif Requires(post): octave Requires(postun): octave %description Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox, designed for easy creation of high quality surface and tetrahedral meshes from 3D volumetric images. It contains a rich set of mesh processing scripts/programs, working either independently or interacting with external free meshing utilities. Iso2Mesh toolbox can directly convert a 3D image stack, including binary, segmented or gray-scale images such as MRI or CT scans, into quality volumetric meshes. This makes it particularly suitable for multi-modality medical imaging data analysis and multi-physics modeling. Iso2Mesh is cross-platform and is compatible with both MATLAB and GNU Octave. %package -n %{octpkg}-demos Summary: Example datasets and scripts for the Iso2Mesh toolbox BuildArch: noarch Requires: octave octave-%{octpkg} Recommends: %{octpkg}-demos %description -n %{octpkg}-demos This package contains the demo script and sample datasets for octave-%{octpkg}. %prep %setup -q -b 1 -n %{octpkg}-%{version} %setup -q -T -D -b 2 -n meshfix-1.2.2 %setup -q -T -D -b 3 -n %{octpkg}-%{version} %patch -P 0 -z .bak -p1 %patch -P 1 -z .bak -p1 rm -rf tools/cork rm -rf tools/meshfix rm -rf tools/tetgen mv ../cork-0.9.1 tools/cork mv ../meshfix-1.2.2 tools/meshfix mv ../tetgen1.5.1 tools/tetgen %patch -P 2 -p1 rm -rf bin/*.mex* bin/*.exe bin/*.dll cp COPYING.txt COPYING mkdir -p inst/ rm -rf base64decode base64encode fast_match_bracket gzipdecode gzipencode \ jdatadecode jdataencode jnifticreate loadjnifti loadjson loadmsgpack \ loadnifti loadubjson lz4decode lz4encode lz4hcdecode lz4hcencode lzipdecode \ lzipencode lzmadecode lzmaencode match_bracket nestbracket2dim nifticreate \ nii2jnii niicodemap niiformat readnifti savebnii savejnifti savejnii \ savemsgpack savenifti saveubjson zlibdecode zlibencode mv *.m inst/ mv img2mesh.fig inst/ # Fix jmeshlib build flags sed -e "s|-Wall|%{optflags}|;s|^LIBS = |&$RPM_LD_FLAGS |" \ -i tools/meshfix/contrib/JMeshLib/test/Makefile # Link FlexiBLAS instead of BLAS sed -e "s| blas| flexiblas|" -i tools/meshfix/CMakeLists.txt # Fix tetgen build flags sed -e "s|^\(CXXFLAGS = \).*|\1%{optflags} $RPM_LD_FLAGS|" \ -e "s|-O0|%{optflags} $RPM_LD_FLAGS|" \ -i tools/tetgen/makefile %build %set_build_flags %if 0%{?__isa_bits} == 32 # Reduce the debuginfo level to avoid virtual memory exhaustion CXXFLAGS="${CXXFLAGS-} -g1" %endif pushd tools # can't use make_build macro below because parallel make with CGAL exhausts # vm's memory and crash the building process, use sequential make instead make USERCCFLAGS="%{optflags}" popd pushd bin ln -s tetgen1.5 tetgen popd mkdir inst/bin pushd bin for exec in *; do ln -s %{_libexecdir}/%{octpkg}/$exec ../inst/bin/$exec done popd %octave_pkg_build %if 0%{?fedora} <=30 %global octave_tar_suffix any-none %endif %install %octave_pkg_install install -m 0755 -vd %{buildroot}%{_libexecdir}/%{octpkg} install -m 0755 -vp bin/* %{buildroot}%{_libexecdir}/%{octpkg}/ %post %octave_cmd pkg rebuild %preun %octave_pkg_preun %postun %octave_cmd pkg rebuild %files %license COPYING.txt %doc README.txt %doc Content.txt %doc AUTHORS.txt %doc ChangeLog.txt %dir %{octpkgdir} %dir %{octpkgdir}/doc %dir %{octpkgdir}/bin %{_libexecdir}/%{octpkg} %{octpkgdir}/doc/* %{octpkgdir}/bin/* %{octpkgdir}/*.m %{octpkgdir}/*.fig %doc %{octpkgdir}/doc-cache %{octpkgdir}/packinfo %files -n %{octpkg}-demos %license COPYING.txt %doc sample %changelog * Sun Sep 08 2024 Antonio Trande - 1.9.6-18 - Rebuild for SuperLU-7.0.0 * Wed Aug 07 2024 Miroslav Suchý - 1.9.6-17 - convert license to SPDX * Thu Jul 18 2024 Fedora Release Engineering - 1.9.6-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Thu Jan 25 2024 Fedora Release Engineering - 1.9.6-15 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Sun Jan 21 2024 Fedora Release Engineering - 1.9.6-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Thu Jul 20 2023 Fedora Release Engineering - 1.9.6-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Jul 07 2023 Antonio Trande - 1.9.6-12 - Rebuild for SuperLU-6.0.0 * Fri Apr 14 2023 Florian Weimer - 1.9.6-11 - Port to C99 * Sun Apr 09 2023 Orion Poplawski - 1.9.6-10 - Rebuild for octave 8.1.0 * Thu Jan 19 2023 Fedora Release Engineering - 1.9.6-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Jul 22 2022 Fedora Release Engineering - 1.9.6-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jun 01 2022 Orion Poplawski - 1.9.6-7 - Rebuild for octave 7.1 * Fri May 06 2022 Iñaki Úcar - 1.9.6-6 - https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager * Thu Jan 20 2022 Fedora Release Engineering - 1.9.6-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Sat Oct 30 2021 Antonio Trande - 1.9.6-3 - Rebuild for SuperLU-5.3.0 * Thu Jul 22 2021 Qianqian Fang - 1.9.6-3 - Apply makefile patch by Laurent Rineau, fix CGAL build error on F35, fix #1917433 * Tue Jan 26 2021 Fedora Release Engineering - 1.9.6-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Fri Sep 04 2020 Qianqian Fang - 1.9.6-1 - New upstream release 1.9.6 * Sat Aug 01 2020 Fedora Release Engineering - 1.9.1-7 - Fix cgal build error on F34 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue Jul 28 2020 Fedora Release Engineering - 1.9.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Wed Jan 29 2020 Fedora Release Engineering - 1.9.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Mon Nov 25 2019 Jerry James - 1.9.1-4 - Rebuild for mpfr 4 - Use Fedora build flags when building jmeshlib and tetgen * Fri Oct 11 2019 Qianqian Fang - 1.9.1-3 - Define octave package-level dependency via the DESCRIPTION file - Remove gmp-devel from Requires * Thu Oct 10 2019 Qianqian Fang - 1.9.1-2 - Fix licenses - Move binaries to libexec * Wed Oct 02 2019 Qianqian Fang - 1.9.1-1 - Initial package