Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c148' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8069637-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 17586 Logging PID: 17587 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 8069637, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '9523ac22557425ac04a28cd5d1d0994892d2a299', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/dolfin', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'dolfin', 'package_version': '2019.1.0.post0-52', 'project_dirname': 'zlib-ng-rebase-fedora', 'project_name': 'zlib-ng-rebase-fedora', 'project_owner': 'ljavorsk', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ljavorsk/zlib-ng-rebase-fedora/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'ljavorsk/zlib-ng-rebase-fedora--ljavorsk', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'ljavorsk', 'tags': [], 'task_id': '8069637-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/dolfin /var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ljavorsk/zlib-ng-rebase-fedora/dolfin', '/var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin'... Running: git checkout 9523ac22557425ac04a28cd5d1d0994892d2a299 -- cmd: ['git', 'checkout', '9523ac22557425ac04a28cd5d1d0994892d2a299', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin rc: 0 stdout: stderr: Note: switching to '9523ac22557425ac04a28cd5d1d0994892d2a299'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 9523ac2 automatic import of dolfin Running: copr-distgit-client sources INFO: Calling: curl -H Pragma: -o dolfin-2019.1.0.post0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ljavorsk/zlib-ng-rebase-fedora/dolfin/dolfin-2019.1.0.post0.tar.gz/md5/79a564ec8f605b8ec434366828e84b60/dolfin-2019.1.0.post0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 10.2M 100 10.2M 0 0 5081k 0 0:00:02 0:00:02 --:--:-- 5081k INFO: Reading stdout from command: md5sum dolfin-2019.1.0.post0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727283753.895608 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727283753.895608 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin/dolfin.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727283753.895608/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727283753.895608/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/f4f5d9a7fcdfd40ccef681894024d8d186d1adc68bea7d28f55eb3985cfe2962/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/f4f5d9a7fcdfd40ccef681894024d8d186d1adc68bea7d28f55eb3985cfe2962/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1727283753.895608/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 209.2 KiB/s | 7.1 KiB | 00m00s Copr repository 100% | 34.8 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 6.6 MiB/s | 701.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-9.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.3 fedora 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-1.fc42 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-1.fc42 fedora 361.9 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 295-1.fc42 fedora 186.6 KiB rpm-build x86_64 4.19.94-1.fc42 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.16.0-4.fc42 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-1.fc41 fedora 2.2 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-7.fc41 fedora 153.5 KiB authselect-libs x86_64 1.5.0-7.fc41 fedora 818.3 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.50-1.fc42 copr_base 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.fc42 fedora 2.6 MiB coreutils-common x86_64 9.5-9.fc42 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc42 copr_base 242.9 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 fedora 136.9 KiB curl x86_64 8.10.1-2.fc42 copr_base 453.3 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.0-17.fc41 fedora 199.3 KiB dwz x86_64 0.15-7.fc41 fedora 290.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils x86_64 0.191-8.fc41 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.191-8.fc41 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB elfutils-libelf x86_64 0.191-8.fc41 fedora 1.2 MiB elfutils-libs x86_64 0.191-8.fc41 fedora 646.2 KiB fedora-gpg-keys noarch 42-0.2 fedora 126.4 KiB fedora-release noarch 42-0.3 fedora 0.0 B fedora-release-identity-basic noarch 42-0.3 fedora 694.0 B fedora-repos noarch 42-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.2 fedora 2.2 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.1-2.fc42 fedora 13.0 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc x86_64 2.40.9000-1.fc42 fedora 6.7 MiB glibc-common x86_64 2.40.9000-1.fc42 fedora 1.0 MiB glibc-gconv-extra x86_64 2.40.9000-1.fc42 fedora 8.1 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-2.fc41 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.6-1.fc42 fedora 934.8 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-3.fc41 fedora 67.2 KiB libcurl x86_64 8.10.1-2.fc42 copr_base 838.4 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB libgcc x86_64 14.2.1-3.fc42 fedora 274.6 KiB libgomp x86_64 14.2.1-3.fc42 fedora 523.8 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB libnghttp2 x86_64 1.63.0-1.fc42 fedora 170.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-6.fc42 fedora 181.1 KiB libsemanage x86_64 3.7-3.fc42 fedora 298.0 KiB libsepol x86_64 3.7-3.fc42 fedora 818.0 KiB libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.5-0.fc41 fedora 202.7 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-7.fc41 fedora 266.8 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB openssl-libs x86_64 1:3.2.2-8.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-6.fc42 fedora 1.8 MiB pam-libs x86_64 1.6.1-6.fc42 fedora 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.19.94-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.19.94-1.fc42 fedora 206.7 KiB rpm-libs x86_64 4.19.94-1.fc42 fedora 722.1 KiB rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.46.0-4.fc41 fedora 1.4 MiB systemd-libs x86_64 256.5-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 fedora 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 copr_base 137.8 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B). 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Already downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/155] Verify package files 100% | 732.0 B/s | 153.0 B | 00m00s [ 2/155] Prepare transaction 100% | 1.8 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-3. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s [ 4/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 6/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 21.0 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s [ 13/155] Installing filesystem-0:3.18- 100% | 1.6 MiB/s | 212.6 KiB | 00m00s [ 14/155] Installing 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and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 20/155] Installing glibc-0:2.40.9000- 100% | 145.8 MiB/s | 6.7 MiB | 00m00s [ 21/155] Installing bash-0:5.2.32-2.fc 100% | 247.6 MiB/s | 8.2 MiB | 00m00s [ 22/155] Installing glibc-common-0:2.4 100% | 116.4 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 23/155] Installing glibc-gconv-extra- 100% | 134.7 MiB/s | 8.2 MiB | 00m00s [ 24/155] Installing zlib-ng-compat-0:2 100% | 135.4 MiB/s | 138.7 KiB | 00m00s [ 25/155] Installing 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libnghttp2-0:1.63. 100% | 167.2 MiB/s | 171.2 KiB | 00m00s [102/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [103/155] Installing coreutils-common-0 100% | 243.3 MiB/s | 11.2 MiB | 00m00s [104/155] Installing openssl-libs-1:3.2 100% | 301.1 MiB/s | 7.8 MiB | 00m00s [105/155] Installing coreutils-0:9.5-9. 100% | 154.6 MiB/s | 5.7 MiB | 00m00s [106/155] Installing ca-certificates-0: 100% | 1.2 MiB/s | 2.4 MiB | 00m02s [107/155] Installing krb5-libs-0:1.21.3 100% | 164.2 MiB/s | 2.3 MiB | 00m00s [108/155] Installing libarchive-0:3.7.6 100% | 183.0 MiB/s | 936.7 KiB | 00m00s [109/155] Installing libtirpc-0:1.3.5-0 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [110/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [111/155] Installing authselect-libs-0: 100% | 74.0 MiB/s | 833.2 KiB | 00m00s [112/155] Installing cracklib-0:2.9.11- 100% | 31.0 MiB/s | 254.3 KiB | 00m00s [113/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [114/155] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [115/155] Installing pam-0:1.6.1-6.fc42 100% | 75.1 MiB/s | 1.9 MiB | 00m00s [116/155] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB | 00m00s [117/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [118/155] Installing rpm-libs-0:4.19.94 100% | 176.7 MiB/s | 723.6 KiB | 00m00s [119/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [120/155] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.5 KiB | 00m00s [121/155] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [122/155] Installing libcurl-0:8.10.1-2 100% | 205.0 MiB/s | 839.5 KiB | 00m00s [123/155] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [124/155] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s | 2.6 MiB | 00m00s [125/155] Installing binutils-0:2.43.50 100% | 272.8 MiB/s | 27.6 MiB | 00m00s [126/155] Installing gdb-minimal-0:15.1 100% | 302.2 MiB/s | 13.0 MiB | 00m00s [127/155] Installing debugedit-0:5.0-17 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [128/155] Installing curl-0:8.10.1-2.fc 100% | 27.8 MiB/s | 455.8 KiB | 00m00s [129/155] Installing rpm-0:4.19.94-1.fc 100% | 89.5 MiB/s | 2.5 MiB | 00m00s [130/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [131/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [132/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.9 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 95.3 MiB/s | 3.7 MiB | 00m00s [153/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [155/155] Installing info-0:7.1.1-1.fc4 100% | 129.2 KiB/s | 362.3 KiB | 00m03s Warning: skipped PGP checks for 5 packages from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.50-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.fc42.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc42.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.2.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.2.noarch fedora-repos-rawhide-42-0.2.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-2.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-1.fc42.x86_64 glibc-common-2.40.9000-1.fc42.x86_64 glibc-gconv-extra-2.40.9000-1.fc42.x86_64 glibc-minimal-langpack-2.40.9000-1.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-1.fc42.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.6-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-3.fc42.x86_64 libgomp-14.2.1-3.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-3.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.0-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-295-1.fc42.noarch rpm-4.19.94-1.fc42.x86_64 rpm-build-4.19.94-1.fc42.x86_64 rpm-build-libs-4.19.94-1.fc42.x86_64 rpm-libs-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-4.fc42.x86_64 sqlite-libs-3.46.0-4.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-52.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1727283753.895608/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1727283753.895608/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-d3op4fhh/dolfin/dolfin.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-52.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727283753.895608/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1727283753.895608/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1727283753.895608/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.94-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Finish: chroot init Start: build phase for dolfin-2019.1.0.post0-52.fc42.src.rpm Start: build setup for dolfin-2019.1.0.post0-52.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-52.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 46.4 KiB/s | 1.5 KiB | 00m00s fedora 100% | 309.3 KiB/s | 7.1 KiB | 00m00s Repositories loaded. Package "pkgconf-2.3.0-1.fc42.x86_64" is already installed. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc42 copr_base 143.0 MiB chrpath x86_64 0.16-24.fc41 fedora 54.6 KiB cmake x86_64 3.28.3-7.fc41 fedora 31.6 MiB eigen3-devel noarch 3.4.0-16.fc41 fedora 8.4 MiB flexiblas-devel x86_64 3.4.4-3.fc41 fedora 4.8 MiB gcc-c++ x86_64 14.2.1-3.fc42 fedora 38.2 MiB gnupg2 x86_64 2.4.5-3.fc41 fedora 9.5 MiB hdf5-devel x86_64 1.12.1-20.fc41 fedora 3.9 MiB make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB petsc-devel x86_64 3.20.6-12.fc42 fedora 5.1 MiB pybind11-devel x86_64 2.13.1-3.fc41 fedora 846.0 KiB python3-devel x86_64 3.13.0~rc2-3.fc42 fedora 1.8 MiB python3-dijitso noarch 2019.1.0-20.fc41 fedora 272.4 KiB python3-ffc noarch 2019.1.0.post0-22.fc41 fedora 3.1 MiB python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB python3-setuptools noarch 69.2.0-8.fc41 fedora 7.2 MiB python3-ufl noarch 2019.1.0-22.fc41 fedora 2.1 MiB scotch-devel x86_64 7.0.5-1.fc42 fedora 65.2 KiB sundials-devel x86_64 6.7.0-4.fc41 fedora 11.1 MiB zlib-ng-compat-devel x86_64 2.2.2-1.fc42 copr_base 106.8 KiB Installing dependencies: Lmod x86_64 8.7.48-1.fc42 fedora 1.3 MiB SuperLU x86_64 7.0.0-1.fc42 fedora 490.3 KiB SuperLUMT-common noarch 4.0.1-3.fc41 fedora 679.2 KiB SuperLUMT64-double x86_64 4.0.1-3.fc41 fedora 161.2 KiB annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.70-1.fc42 fedora 985.6 KiB boost x86_64 1.83.0-8.fc42 copr_base 1.3 KiB boost-atomic x86_64 1.83.0-8.fc42 copr_base 25.0 KiB boost-chrono x86_64 1.83.0-8.fc42 copr_base 41.6 KiB boost-container x86_64 1.83.0-8.fc42 copr_base 69.5 KiB boost-context x86_64 1.83.0-8.fc42 copr_base 16.5 KiB boost-contract x86_64 1.83.0-8.fc42 copr_base 103.2 KiB boost-coroutine x86_64 1.83.0-8.fc42 copr_base 25.1 KiB boost-date-time x86_64 1.83.0-8.fc42 copr_base 16.3 KiB boost-fiber x86_64 1.83.0-8.fc42 copr_base 82.8 KiB boost-filesystem x86_64 1.83.0-8.fc42 copr_base 147.6 KiB boost-graph x86_64 1.83.0-8.fc42 copr_base 342.3 KiB boost-iostreams x86_64 1.83.0-8.fc42 copr_base 94.7 KiB boost-json x86_64 1.83.0-8.fc42 copr_base 329.1 KiB boost-locale x86_64 1.83.0-8.fc42 copr_base 610.3 KiB boost-log x86_64 1.83.0-8.fc42 copr_base 1.5 MiB boost-math x86_64 1.83.0-8.fc42 copr_base 662.9 KiB boost-nowide x86_64 1.83.0-8.fc42 copr_base 24.9 KiB boost-numpy3 x86_64 1.83.0-8.fc42 copr_base 57.6 KiB boost-program-options x86_64 1.83.0-8.fc42 copr_base 272.7 KiB boost-python3 x86_64 1.83.0-8.fc42 copr_base 254.4 KiB boost-random x86_64 1.83.0-8.fc42 copr_base 33.7 KiB boost-regex x86_64 1.83.0-8.fc42 copr_base 275.0 KiB boost-serialization x86_64 1.83.0-8.fc42 copr_base 441.7 KiB boost-stacktrace x86_64 1.83.0-8.fc42 copr_base 68.1 KiB boost-system x86_64 1.83.0-8.fc42 copr_base 16.3 KiB boost-test x86_64 1.83.0-8.fc42 copr_base 643.0 KiB boost-thread x86_64 1.83.0-8.fc42 copr_base 136.8 KiB boost-timer x86_64 1.83.0-8.fc42 copr_base 25.1 KiB boost-type_erasure x86_64 1.83.0-8.fc42 copr_base 58.2 KiB boost-wave x86_64 1.83.0-8.fc42 copr_base 643.8 KiB cmake-data noarch 3.28.3-7.fc41 fedora 8.0 MiB cmake-filesystem x86_64 3.28.3-7.fc41 fedora 0.0 B cmake-rpm-macros noarch 3.28.3-7.fc41 fedora 7.5 KiB cpp x86_64 14.2.1-3.fc42 fedora 35.0 MiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat x86_64 2.6.3-1.fc42 fedora 291.5 KiB flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB flexiblas-netlib64 x86_64 3.4.4-3.fc41 fedora 10.8 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB flexiblas-openblas-openmp64 x86_64 3.4.4-3.fc41 fedora 43.3 KiB gcc x86_64 14.2.1-3.fc42 fedora 104.4 MiB gcc-gfortran x86_64 14.2.1-3.fc42 fedora 37.2 MiB gcc-plugin-annobin x86_64 14.2.1-3.fc42 fedora 61.1 KiB glibc-devel x86_64 2.40.9000-1.fc42 fedora 37.8 KiB glibc-headers-x86 noarch 2.40.9000-1.fc42 fedora 2.2 MiB gnutls x86_64 3.8.7-4.fc42 fedora 3.2 MiB hdf5 x86_64 1.12.1-20.fc41 fedora 8.4 MiB hwloc-libs x86_64 2.11.1-3.fc42 fedora 2.9 MiB json-c x86_64 0.17-4.fc41 fedora 82.4 KiB jsoncpp x86_64 1.9.5-8.fc41 fedora 253.4 KiB kernel-headers x86_64 6.11.0-63.fc42 fedora 6.4 MiB libX11 x86_64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB libaec x86_64 1.1.2-2.fc41 fedora 98.1 KiB libaec-devel x86_64 1.1.2-2.fc41 fedora 11.9 KiB libassuan x86_64 2.5.7-2.fc41 fedora 163.8 KiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libfabric x86_64 1.22.0-1.fc41 fedora 5.2 MiB libgcrypt x86_64 1.11.0-3.fc41 fedora 1.5 MiB libgfortran x86_64 14.2.1-3.fc42 fedora 3.0 MiB libgpg-error x86_64 1.50-2.fc41 fedora 889.5 KiB libibverbs x86_64 51.0-4.fc41 fedora 1.2 MiB libicu x86_64 74.2-2.fc41 fedora 34.9 MiB libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB libksba x86_64 1.6.7-2.fc41 fedora 398.4 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libnl3 x86_64 3.10.0-1.fc41 fedora 1.0 MiB libpsm2 x86_64 11.2.230-5.fc41 fedora 442.5 KiB libquadmath x86_64 14.2.1-3.fc42 fedora 325.9 KiB libquadmath-devel x86_64 14.2.1-3.fc42 fedora 21.9 KiB librdmacm x86_64 51.0-4.fc41 fedora 146.2 KiB libstdc++-devel x86_64 14.2.1-3.fc42 fedora 15.4 MiB libuv x86_64 1:1.48.0-2.fc41 fedora 546.8 KiB libxcb x86_64 1.17.0-2.fc41 fedora 1.1 MiB libxcrypt-devel x86_64 4.4.36-7.fc41 fedora 30.3 KiB lua x86_64 5.4.6-6.fc41 fedora 601.7 KiB lua-filesystem x86_64 1.8.0-12.fc41 fedora 64.8 KiB lua-json noarch 1.3.4-8.fc41 fedora 59.4 KiB lua-lpeg x86_64 1.1.0-4.fc42 fedora 177.3 KiB lua-posix x86_64 36.2.1-7.fc41 fedora 599.8 KiB lua-term x86_64 0.08-4.fc41 fedora 26.9 KiB metis x86_64 5.1.0.3-6.fc41 fedora 985.2 KiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB mpi4py-common noarch 4.0.0-1.fc41 fedora 26.7 KiB mpich x86_64 4.2.2-1.fc42 fedora 7.0 MiB nettle x86_64 3.10-3.fc41 fedora 793.0 KiB npth x86_64 1.7-2.fc41 fedora 49.6 KiB numactl-libs x86_64 2.0.18-2.fc41 fedora 61.0 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB openblas-openmp64 x86_64 0.3.26-5.fc41 fedora 39.5 MiB openblas-serial x86_64 0.3.26-5.fc41 fedora 37.9 MiB petsc x86_64 3.20.6-12.fc42 fedora 20.4 MiB procps-ng x86_64 4.0.4-4.fc41 fedora 1.0 MiB pyproject-rpm-macros noarch 1.15.0-1.fc42 fedora 109.0 KiB python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 x86_64 3.13.0~rc2-3.fc42 fedora 31.8 KiB python3-fiat noarch 2019.1.0-22.fc41 fedora 842.2 KiB python3-libs x86_64 3.13.0~rc2-3.fc42 fedora 40.3 MiB python3-mpi4py-mpich x86_64 4.0.0-1.fc41 fedora 3.7 MiB python3-mpich x86_64 4.2.2-1.fc42 fedora 99.0 B python3-mpmath noarch 1.3.0-10.fc41 fedora 5.2 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-sympy x86_64 1.13.3-1.fc42 fedora 78.3 MiB rhash x86_64 1.4.4-2.fc41 fedora 349.9 KiB scotch x86_64 7.0.5-1.fc42 fedora 796.4 KiB suitesparse64 x86_64 7.7.0-2.fc41 fedora 139.9 MiB sundials x86_64 6.7.0-4.fc41 fedora 6.8 MiB tcl x86_64 1:8.6.14-2.fc41 fedora 4.2 MiB tpm2-tss x86_64 4.1.3-3.fc41 fedora 1.6 MiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB vim-filesystem noarch 2:9.1.737-1.fc42 fedora 40.0 B yaksa x86_64 0.3-6.fc41 fedora 44.9 MiB Transaction Summary: Installing: 144 packages Total size of inbound packages is 246 MiB. Need to download 138 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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boost-program-options-0:1.83. 100% | 5.3 MiB/s | 108.8 KiB | 00m00s [109/144] boost-random-0:1.83.0-8.fc42. 100% | 1.8 MiB/s | 23.8 KiB | 00m00s [110/144] boost-python3-0:1.83.0-8.fc42 100% | 5.3 MiB/s | 97.1 KiB | 00m00s [111/144] boost-stacktrace-0:1.83.0-8.f 100% | 2.3 MiB/s | 30.0 KiB | 00m00s [112/144] boost-serialization-0:1.83.0- 100% | 6.9 MiB/s | 134.2 KiB | 00m00s [113/144] boost-regex-0:1.83.0-8.fc42.x 100% | 4.7 MiB/s | 111.1 KiB | 00m00s [114/144] boost-system-0:1.83.0-8.fc42. 100% | 1.3 MiB/s | 15.2 KiB | 00m00s [115/144] boost-thread-0:1.83.0-8.fc42. 100% | 5.4 MiB/s | 61.3 KiB | 00m00s [116/144] boost-test-0:1.83.0-8.fc42.x8 100% | 9.7 MiB/s | 239.5 KiB | 00m00s [117/144] boost-timer-0:1.83.0-8.fc42.x 100% | 1.3 MiB/s | 21.2 KiB | 00m00s [118/144] boost-type_erasure-0:1.83.0-8 100% | 2.5 MiB/s | 33.4 KiB | 00m00s [119/144] boost-wave-0:1.83.0-8.fc42.x8 100% | 9.8 MiB/s | 210.1 KiB | 00m00s [120/144] mpi4py-common-0:4.0.0-1.fc41. 100% | 408.7 KiB/s | 18.4 KiB | 00m00s [121/144] python3-mpi4py-mpich-0:4.0.0- 100% | 7.0 MiB/s | 940.7 KiB | 00m00s [122/144] python3-mpich-0:4.2.2-1.fc42. 100% | 112.3 KiB/s | 10.1 KiB | 00m00s [123/144] mpich-0:4.2.2-1.fc42.x86_64 100% | 10.4 MiB/s | 2.1 MiB | 00m00s [124/144] hwloc-libs-0:2.11.1-3.fc42.x8 100% | 11.5 MiB/s | 2.1 MiB | 00m00s [125/144] libfabric-0:1.22.0-1.fc41.x86 100% | 6.2 MiB/s | 1.4 MiB | 00m00s [126/144] yaksa-0:0.3-6.fc41.x86_64 100% | 18.6 MiB/s | 8.8 MiB | 00m00s [127/144] libibverbs-0:51.0-4.fc41.x86_ 100% | 1.1 MiB/s | 435.1 KiB | 00m00s [128/144] libnl3-0:3.10.0-1.fc41.x86_64 100% | 1.0 MiB/s | 349.2 KiB | 00m00s [129/144] numactl-libs-0:2.0.18-2.fc41. 100% | 932.7 KiB/s | 30.8 KiB | 00m00s [130/144] libpsm2-0:11.2.230-5.fc41.x86 100% | 4.0 MiB/s | 200.0 KiB | 00m00s [131/144] librdmacm-0:51.0-4.fc41.x86_6 100% | 1.5 MiB/s | 72.0 KiB | 00m00s [132/144] lua-filesystem-0:1.8.0-12.fc4 100% | 964.0 KiB/s | 33.7 KiB | 00m00s [133/144] lua-json-0:1.3.4-8.fc41.noarc 100% | 634.3 KiB/s | 26.0 KiB | 00m00s [134/144] Lmod-0:8.7.48-1.fc42.x86_64 100% | 4.2 MiB/s | 265.9 KiB | 00m00s [135/144] lua-term-0:0.08-4.fc41.x86_64 100% | 616.5 KiB/s | 16.0 KiB | 00m00s [136/144] lua-posix-0:36.2.1-7.fc41.x86 100% | 4.2 MiB/s | 141.4 KiB | 00m00s [137/144] tcl-1:8.6.14-2.fc41.x86_64 100% | 16.2 MiB/s | 1.1 MiB | 00m00s [138/144] lua-lpeg-0:1.1.0-4.fc42.x86_6 100% | 1.1 MiB/s | 70.2 KiB | 00m00s [139/144] lua-0:5.4.6-6.fc41.x86_64 100% | 2.9 MiB/s | 190.9 KiB | 00m00s [140/144] procps-ng-0:4.0.4-4.fc41.x86_ 100% | 10.9 MiB/s | 366.8 KiB | 00m00s [141/144] pyproject-rpm-macros-0:1.15.0 100% | 2.4 MiB/s | 43.4 KiB | 00m00s [142/144] python-rpm-macros-0:3.13-3.fc 100% | 1.0 MiB/s | 17.7 KiB | 00m00s [143/144] python3-rpm-generators-0:14-1 100% | 1.9 MiB/s | 29.3 KiB | 00m00s [144/144] python3-rpm-macros-0:3.13-3.f 100% | 829.6 KiB/s | 12.4 KiB | 00m00s -------------------------------------------------------------------------------- [144/144] Total 100% | 26.0 MiB/s | 138.2 MiB | 00m05s Running transaction [ 1/146] Verify package files 100% | 177.0 B/s | 144.0 B | 00m01s [ 2/146] Prepare transaction 100% | 433.0 B/s | 144.0 B | 00m00s [ 3/146] Installing libgfortran-0:14.2 100% | 277.1 MiB/s | 3.0 MiB | 00m00s [ 4/146] Installing boost-system-0:1.8 100% | 16.9 MiB/s | 17.3 KiB | 00m00s [ 5/146] Installing cmake-filesystem-0 100% | 3.5 MiB/s | 7.1 KiB | 00m00s [ 6/146] Installing boost-chrono-0:1.8 100% | 41.6 MiB/s | 42.6 KiB | 00m00s [ 7/146] Installing boost-thread-0:1.8 100% | 134.5 MiB/s | 137.7 KiB | 00m00s [ 8/146] Installing libicu-0:74.2-2.fc 100% | 309.3 MiB/s | 35.0 MiB | 00m00s [ 9/146] Installing libquadmath-0:14.2 100% | 159.8 MiB/s | 327.2 KiB | 00m00s [ 10/146] Installing libmpc-0:1.3.1-6.f 100% | 81.1 MiB/s | 166.2 KiB | 00m00s [ 11/146] Installing libgpg-error-0:1.5 100% | 145.7 MiB/s | 895.4 KiB | 00m00s [ 12/146] Installing boost-regex-0:1.83 100% | 134.8 MiB/s | 276.0 KiB | 00m00s [ 13/146] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 14/146] Installing libnl3-0:3.10.0-1. 100% | 204.8 MiB/s | 1.0 MiB | 00m00s [ 15/146] Installing boost-context-0:1. 100% | 17.1 MiB/s | 17.5 KiB | 00m00s [ 16/146] Installing boost-atomic-0:1.8 100% | 25.4 MiB/s | 26.0 KiB | 00m00s [ 17/146] Installing boost-filesystem-0 100% | 145.1 MiB/s | 148.6 KiB | 00m00s [ 18/146] Installing openblas-0:0.3.26- 100% | 95.5 MiB/s | 97.8 KiB | 00m00s [ 19/146] Installing libibverbs-0:51.0- 100% | 151.7 MiB/s | 1.2 MiB | 00m00s [ 20/146] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 21/146] Installing numactl-libs-0:2.0 100% | 60.4 MiB/s | 61.9 KiB | 00m00s [ 22/146] Installing boost-date-time-0: 100% | 16.9 MiB/s | 17.3 KiB | 00m00s [ 23/146] Installing boost-container-0: 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [ 24/146] Installing metis-0:5.1.0.3-6. 100% | 193.3 MiB/s | 989.8 KiB | 00m00s [ 25/146] Installing libaec-0:1.1.2-2.f 100% | 49.1 MiB/s | 100.5 KiB | 00m00s [ 26/146] Installing hdf5-0:1.12.1-20.f 100% | 279.8 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flexiblas-netlib-0 100% | 333.3 MiB/s | 10.7 MiB | 00m00s [ 40/146] Installing SuperLU-0:7.0.0-1. 100% | 239.9 MiB/s | 491.4 KiB | 00m00s [ 41/146] Installing openblas-openmp64- 100% | 476.3 MiB/s | 39.5 MiB | 00m00s [ 42/146] Installing flexiblas-netlib64 100% | 336.7 MiB/s | 10.8 MiB | 00m00s [ 43/146] Installing flexiblas-openblas 100% | 43.1 MiB/s | 44.2 KiB | 00m00s [ 44/146] Installing openblas-serial-0: 100% | 473.8 MiB/s | 37.9 MiB | 00m00s [ 45/146] Installing suitesparse64-0:7. 100% | 436.0 MiB/s | 140.0 MiB | 00m00s [ 46/146] Installing boost-fiber-0:1.83 100% | 81.8 MiB/s | 83.7 KiB | 00m00s [ 47/146] Installing boost-log-0:1.83.0 100% | 295.1 MiB/s | 1.5 MiB | 00m00s [ 48/146] Installing boost-coroutine-0: 100% | 25.5 MiB/s | 26.2 KiB | 00m00s [ 49/146] Installing boost-graph-0:1.83 100% | 167.6 MiB/s | 343.3 KiB | 00m00s [ 50/146] Installing libassuan-0:2.5.7- 100% | 80.9 MiB/s | 165.6 KiB | 00m00s [ 51/146] Installing libgcrypt-0:1.11.0 100% | 257.0 MiB/s | 1.5 MiB | 00m00s [ 52/146] Installing libksba-0:1.6.7-2. 100% | 130.5 MiB/s | 401.0 KiB | 00m00s [ 53/146] Installing cpp-0:14.2.1-3.fc4 100% | 312.5 MiB/s | 35.0 MiB | 00m00s [ 54/146] Installing libicu-devel-0:74. 100% | 165.9 MiB/s | 5.6 MiB | 00m00s [ 55/146] Installing boost-locale-0:1.8 100% | 199.0 MiB/s | 611.2 KiB | 00m00s [ 56/146] Installing boost-type_erasure 100% | 57.8 MiB/s | 59.2 KiB | 00m00s [ 57/146] Installing boost-timer-0:1.83 100% | 25.5 MiB/s | 26.1 KiB | 00m00s [ 58/146] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB | 00m00s [ 59/146] Installing annobin-docs-0:12. 100% | 96.5 MiB/s | 98.8 KiB | 00m00s [ 60/146] Installing procps-ng-0:4.0.4- 100% | 148.7 MiB/s | 1.0 MiB | 00m00s [ 61/146] Installing lua-0:5.4.6-6.fc41 100% | 196.9 MiB/s | 604.8 KiB | 00m00s [ 62/146] Installing lua-term-0:0.08-4. 100% | 28.3 MiB/s | 28.9 KiB | 00m00s [ 63/146] Installing lua-lpeg-0:1.1.0-4 100% | 174.9 MiB/s | 179.1 KiB | 00m00s [ 64/146] Installing lua-json-0:1.3.4-8 100% | 30.9 MiB/s | 63.2 KiB | 00m00s [ 65/146] Installing tcl-1:8.6.14-2.fc4 100% | 192.1 MiB/s | 4.2 MiB | 00m00s [ 66/146] Installing lua-posix-0:36.2.1 100% | 75.0 MiB/s | 614.8 KiB | 00m00s [ 67/146] Installing lua-filesystem-0:1 100% | 32.7 MiB/s | 67.0 KiB | 00m00s [ 68/146] Installing Lmod-0:8.7.48-1.fc 100% | 50.2 MiB/s | 1.3 MiB | 00m00s [ 69/146] Installing yaksa-0:0.3-6.fc41 100% | 380.7 MiB/s | 44.9 MiB | 00m00s [ 70/146] Installing hwloc-libs-0:2.11. 100% | 356.8 MiB/s | 2.9 MiB | 00m00s [ 71/146] Installing mpi4py-common-0:4. 100% | 9.0 MiB/s | 27.7 KiB | 00m00s [ 72/146] Installing kernel-headers-0:6 100% | 121.2 MiB/s | 6.5 MiB | 00m00s [ 73/146] Installing boost-test-0:1.83. 100% | 209.8 MiB/s | 644.5 KiB | 00m00s [ 74/146] Installing boost-stacktrace-0 100% | 68.4 MiB/s | 70.0 KiB | 00m00s [ 75/146] Installing boost-serializatio 100% | 216.4 MiB/s | 443.1 KiB | 00m00s [ 76/146] Installing boost-random-0:1.8 100% | 33.9 MiB/s | 34.7 KiB | 00m00s [ 77/146] Installing boost-program-opti 100% | 133.7 MiB/s | 273.7 KiB | 00m00s [ 78/146] Installing boost-nowide-0:1.8 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 79/146] Installing boost-math-0:1.83. 100% | 216.9 MiB/s | 666.2 KiB | 00m00s [ 80/146] Installing boost-iostreams-0: 100% | 93.5 MiB/s | 95.7 KiB | 00m00s [ 81/146] Installing boost-contract-0:1 100% | 33.9 MiB/s | 104.2 KiB | 00m00s [ 82/146] Installing glibc-headers-x86- 100% | 99.4 MiB/s | 2.3 MiB | 00m00s [ 83/146] Installing libxcrypt-devel-0: 100% | 15.9 MiB/s | 32.6 KiB | 00m00s [ 84/146] Installing glibc-devel-0:2.40 100% | 13.5 MiB/s | 41.5 KiB | 00m00s [ 85/146] Installing gcc-0:14.2.1-3.fc4 100% | 325.2 MiB/s | 104.4 MiB | 00m00s [ 86/146] Installing libquadmath-devel- 100% | 22.8 MiB/s | 23.4 KiB | 00m00s [ 87/146] Installing gcc-gfortran-0:14. 100% | 303.0 MiB/s | 37.3 MiB | 00m00s [ 88/146] Installing libstdc++-devel-0: 100% | 228.8 MiB/s | 15.6 MiB | 00m00s [ 89/146] Installing gcc-c++-0:14.2.1-3 100% | 320.7 MiB/s | 38.2 MiB | 00m00s [ 90/146] Installing libXau-0:1.0.11-7. 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [ 91/146] Installing libxcb-0:1.17.0-2. 100% | 139.6 MiB/s | 1.1 MiB | 00m00s [ 92/146] Installing SuperLUMT-common-0 100% | 332.1 MiB/s | 680.2 KiB | 00m00s [ 93/146] Installing SuperLUMT64-double 100% | 158.1 MiB/s | 161.9 KiB | 00m00s [ 94/146] Installing sundials-0:6.7.0-4 100% | 261.7 MiB/s | 6.8 MiB | 00m00s [ 95/146] Installing libX11-common-0:1. 100% | 69.8 MiB/s | 1.2 MiB | 00m00s [ 96/146] Installing libX11-0:1.8.10-2. 100% | 257.1 MiB/s | 1.3 MiB | 00m00s [ 97/146] Installing petsc-0:3.20.6-12. 100% | 304.9 MiB/s | 20.4 MiB | 00m00s [ 98/146] Installing tzdata-0:2024a-9.f 100% | 28.1 MiB/s | 1.9 MiB | 00m00s [ 99/146] Installing python-pip-wheel-0 100% | 413.9 MiB/s | 1.2 MiB | 00m00s [100/146] Installing mpdecimal-0:2.5.1- 100% | 100.6 MiB/s | 206.0 KiB | 00m00s [101/146] Installing libb2-0:0.98.1-12. 100% | 7.0 MiB/s | 43.3 KiB | 00m00s [102/146] Installing python3-libs-0:3.1 100% | 223.7 MiB/s | 40.7 MiB | 00m00s [103/146] Installing python3-0:3.13.0~r 100% | 6.6 MiB/s | 33.6 KiB | 00m00s [104/146] Installing python3-numpy-1:1. 100% | 264.3 MiB/s | 44.1 MiB | 00m00s [105/146] Installing boost-python3-0:1. 100% | 124.7 MiB/s | 255.3 KiB | 00m00s [106/146] Installing mpich-0:4.2.2-1.fc 100% | 291.9 MiB/s | 7.0 MiB | 00m00s [107/146] Installing cmake-rpm-macros-0 100% | 7.9 MiB/s | 8.1 KiB | 00m00s [108/146] Installing python3-mpich-0:4. 100% | 527.3 KiB/s | 540.0 B | 00m00s [109/146] Installing python3-mpi4py-mpi 100% | 246.0 MiB/s | 3.7 MiB | 00m00s [110/146] Installing python3-dijitso-0: 100% | 91.7 MiB/s | 281.7 KiB | 00m00s [111/146] Installing boost-0:1.83.0-8.f 100% | 0.0 B/s | 1.7 KiB | 00m00s [112/146] Installing boost-numpy3-0:1.8 100% | 28.6 MiB/s | 58.6 KiB | 00m00s [113/146] Installing python3-ufl-0:2019 100% | 107.2 MiB/s | 2.1 MiB | 00m00s [114/146] Installing python3-mpmath-0:1 100% | 148.9 MiB/s | 5.2 MiB | 00m00s [115/146] Installing python3-sympy-0:1. 100% | 200.6 MiB/s | 79.2 MiB | 00m00s [116/146] Installing python3-fiat-0:201 100% | 121.0 MiB/s | 867.2 KiB | 00m00s [117/146] Installing python3-packaging- 100% | 105.8 MiB/s | 433.2 KiB | 00m00s [118/146] Installing python3-rpm-genera 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [119/146] Installing vim-filesystem-2:9 100% | 4.6 MiB/s | 4.7 KiB | 00m00s [120/146] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [121/146] Installing json-c-0:0.17-4.fc 100% | 3.1 MiB/s | 83.6 KiB | 00m00s [122/146] Installing tpm2-tss-0:4.1.3-3 100% | 158.1 MiB/s | 1.6 MiB | 00m00s [123/146] Installing nettle-0:3.10-3.fc 100% | 194.4 MiB/s | 796.1 KiB | 00m00s [124/146] Installing gnutls-0:3.8.7-4.f 100% | 249.4 MiB/s | 3.2 MiB | 00m00s [125/146] Installing scotch-0:7.0.5-1.f 100% | 156.4 MiB/s | 801.0 KiB | 00m00s [126/146] Installing rhash-0:1.4.4-2.fc 100% | 115.6 MiB/s | 355.1 KiB | 00m00s [127/146] Installing libuv-1:1.48.0-2.f 100% | 178.9 MiB/s | 549.6 KiB | 00m00s [128/146] Installing jsoncpp-0:1.9.5-8. 100% | 22.6 MiB/s | 254.9 KiB | 00m00s [129/146] Installing cmake-data-0:3.28. 100% | 57.7 MiB/s | 8.5 MiB | 00m00s [130/146] Installing cmake-0:3.28.3-7.f 100% | 322.9 MiB/s | 31.6 MiB | 00m00s [131/146] Installing npth-0:1.7-2.fc41. 100% | 49.5 MiB/s | 50.7 KiB | 00m00s [132/146] Installing gnupg2-0:2.4.5-3.f 100% | 251.1 MiB/s | 9.5 MiB | 00m00s [133/146] Installing pybind11-devel-0:2 100% | 166.8 MiB/s | 853.9 KiB | 00m00s [134/146] Installing scotch-devel-0:7.0 100% | 33.6 MiB/s | 68.9 KiB | 00m00s [135/146] Installing python3-devel-0:3. 100% | 106.7 MiB/s | 1.8 MiB | 00m00s [136/146] Installing python3-ffc-0:2019 100% | 63.9 MiB/s | 3.1 MiB | 00m00s [137/146] Installing boost-devel-0:1.83 100% | 149.7 MiB/s | 145.8 MiB | 00m01s [138/146] Installing python3-setuptools 100% | 143.7 MiB/s | 7.3 MiB | 00m00s [139/146] Installing petsc-devel-0:3.20 100% | 215.4 MiB/s | 5.2 MiB | 00m00s [140/146] Installing sundials-devel-0:6 100% | 370.6 MiB/s | 11.1 MiB | 00m00s [141/146] Installing hdf5-devel-0:1.12. 100% | 205.0 MiB/s | 3.9 MiB | 00m00s [142/146] Installing annobin-plugin-gcc 100% | 40.2 MiB/s | 987.3 KiB | 00m00s [143/146] Installing gcc-plugin-annobin 100% | 2.6 MiB/s | 62.7 KiB | 00m00s [144/146] Installing flexiblas-devel-0: 100% | 280.2 MiB/s | 4.8 MiB | 00m00s [145/146] Installing eigen3-devel-0:3.4 100% | 169.4 MiB/s | 8.5 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [146/146] Installing chrpath-0:0.16-24. 100% | 213.6 KiB/s | 56.4 KiB | 00m00s Warning: skipped PGP checks for 32 packages from repository: copr_base Complete! Finish: build setup for dolfin-2019.1.0.post0-52.fc42.src.rpm Start: rpmbuild dolfin-2019.1.0.post0-52.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.ugW5LV + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + test -d /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2SsrpV + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/lib/rpm/redhat/gpgverify --keyring=/builddir/build/SOURCES/3083BE4C722232E28AD0828CBED06106DD22BAB3.gpg --signature=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz.asc --data=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz gpgv: Signature made Fri Apr 26 07:47:43 2019 UTC gpgv: using RSA key 3083BE4C722232E28AD0828CBED06106DD22BAB3 gpgv: Good signature from "FEniCS Project Steering Council " + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + rm -rf dolfin-2019.1.0.post0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd dolfin-2019.1.0.post0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-pkgconfig-drop-irrelevant-part-from-Libs-and-Cflags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Add-missing-include-for-compatiblity-with-gcc-13.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i -r 's|pybind11==|pybind11>=|' python/setup.py + rm cmake/modules/FindBLAS.cmake + cat + sed -r -i 's/#include \n\0/' dolfin/geometry/IntersectionConstruction.cpp dolfin/mesh/MeshFunction.h + sed -r -i 's|boost/detail/endian.hpp|boost/endian/arithmetic.hpp|' dolfin/io/VTKFile.cpp dolfin/io/VTKWriter.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ykYDhF + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + mkdir -p build + cd build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DBLA_VENDOR=FlexiBLAS -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=off -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Found Boost: /usr/include (found version "1.83.0") found components: timer filesystem program_options iostreams regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3") -- Found UFC: /usr/lib/python3.13/site-packages/ffc/backends/ufc (Required is at least version "2019.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.20.6", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- SLEPc could not be found. Be sure to set SLEPC_DIR. (missing: SLEPC_FOUND) (Required is at least version "3.7") -- Checking for package 'AMD' -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib64/libflexiblas.so -- UMFPACK could not be found. Be sure to set UMFPACK_DIR. (missing: UMFPACK_INCLUDE_DIRS AMD_LIBRARIES UMFPACK_TEST_RUNS) -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- CHOLMOD could not be found. Be sure to set CHOLMOD_DIR. (missing: CHOLMOD_INCLUDE_DIRS CHOLMOD_TEST_RUNS) -- Found HDF5: /lib64/libhdf5.so (found version "1.12.1") found components: C -- Checking for Trilinos -- Unable to find Trilinos (>= 12.4.0) -- Trilinos could not be found -- Found ZLIB: /lib64/libz.so (found version "1.3.1") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * BLAS, Basic Linear Algebra Subprograms, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2019.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * UMFPACK, Sparse LU factorization library, * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/Biharmonic.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/built-in-meshes/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P1.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P3.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/Poisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done (27.5s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build 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Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/adaptivesolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/ErrorControl.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/GoalFunctional.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/Extrapolation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/marking.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:30: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here 110 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here 110 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ 84 | HDF5Interface::add_attribute(fid, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here 168 | store_object(vector.mpi_comm(), vector, t, _vector_times, _name, "/Vector"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ 84 | HDF5Interface::add_attribute(fid, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here 168 | store_object(vector.mpi_comm(), vector, t, _vector_times, _name, "/Vector"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o -MF CMakeFiles/dolfin.dir/ale/ALE.cpp.o.d -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/ALE.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -MF CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o.d -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/MeshDisplacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"1e5e8d5476f82af05ab9c93365d99f971e0284d6\" -MD -MT dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o -MF CMakeFiles/dolfin.dir/common/defines.cpp.o.d -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/defines.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o -MF CMakeFiles/dolfin.dir/common/init.cpp.o.d -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o -MF CMakeFiles/dolfin.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/MPI.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/HarmonicSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o -MF CMakeFiles/dolfin.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/Timer.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -MF CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o.d -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/UniqueIdGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o -MF CMakeFiles/dolfin.dir/common/timing.cpp.o.d -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/timing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o -MF CMakeFiles/dolfin.dir/common/utils.cpp.o.d -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o -MF CMakeFiles/dolfin.dir/common/Variable.cpp.o.d -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/assemble.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/assemble_local.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -MF CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o.d -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/AssemblerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/Assembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/Assembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -MF CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DiscreteOperators.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o -MF CMakeFiles/dolfin.dir/fem/Equation.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/Equation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp: In static member function ‘static void dolfin::DofMapBuilder::compute_node_reordering(dolfin::IndexMap&, std::vector&, const std::unordered_map >&, const std::vector&, const std::vector >&, const std::vector&, const std::set&, MPI_Comm)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp:1663:13: warning: unused variable ‘it’ [-Wunused-variable] 1663 | for (auto it : old_to_new_local) | ^~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -MF CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o.d -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/fem_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/FiniteElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o -MF CMakeFiles/dolfin.dir/fem/Form.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/Form.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearTimeDependentProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp: In member function ‘void dolfin::LinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 114 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: note: use reference type to prevent copying 114 | for (const auto bc: _bcs) | ^~ | & make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LocalAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LocalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshForm.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp: In member function ‘void dolfin::NonlinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 156 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: note: use reference type to prevent copying 156 | for (const auto bc: _bcs) | ^~ | & make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -MF CMakeFiles/dolfin.dir/fem/PointSource.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PointSource.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o -MF CMakeFiles/dolfin.dir/fem/solve.cpp.o.d -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -MF CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp: In static member function ‘static std::shared_ptr dolfin::PETScDMCollection::create_transfer_matrix(const dolfin::FunctionSpace&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp:545:15: warning: unused variable ‘mend’ [-Wunused-variable] 545 | std::size_t mend = finemap->ownership_range().second; | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/SparsityPatternBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/SystemAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o -MF CMakeFiles/dolfin.dir/fem/UFC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/UFC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/CoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o -MF CMakeFiles/dolfin.dir/function/assign.cpp.o.d -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/assign.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o -MF CMakeFiles/dolfin.dir/function/Constant.cpp.o.d -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/Constant.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o -MF CMakeFiles/dolfin.dir/function/Expression.cpp.o.d -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/Expression.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/FunctionAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/FunctionAXPY.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/FunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o -MF CMakeFiles/dolfin.dir/function/Function.cpp.o.d -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/GenericFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshCoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -MF CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o.d -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/LagrangeInterpolator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshSubSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/SpecialFacetFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/SpecialFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/BoxMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/IntervalMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/RectangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/SphericalShellMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/UnitDiscMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/UnitTetrahedronMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/UnitTriangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/BoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/CollisionPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp: In static member function ‘static std::vector > dolfin::ConvexTriangulation::_triangulate_1d(const std::vector&, std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:238:10: warning: variable ‘collinear’ set but not used [-Wunused-but-set-variable] 238 | bool collinear = true; | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 42 | for (const Point p : simplex) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: note: use reference type to prevent copying 42 | for (const Point p : simplex) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&, const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 52 | for (const Point p : simplex_0) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: note: use reference type to prevent copying 52 | for (const Point p : simplex_0) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 57 | for (const Point p : simplex_1) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: note: use reference type to prevent copying 57 | for (const Point p : simplex_1) | ^ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -MF CMakeFiles/dolfin.dir/geometry/intersect.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/intersect.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GenericBoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -MF CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/MeshPointIntersection.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o -MF CMakeFiles/dolfin.dir/geometry/Point.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/IntersectionConstruction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/predicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/predicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -MF CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/BoostGraphOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp: In static member function ‘static int32_t dolfin::GraphBuilder::compute_nonlocal_dual_graph(MPI_Comm, const boost::multi_array&, const dolfin::CellType&, int64_t, std::vector >&, FacetCellMap&, std::set&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp:364:21: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 364 | const std::int8_t num_vertices_per_cell = cell_type.num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -MF CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/ParMETIS.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -MF CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -MF CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o.d -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/SCOTCH.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o -MF CMakeFiles/dolfin.dir/io/base64.cpp.o.d -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/base64.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -MF CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/ZoltanInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -MF CMakeFiles/dolfin.dir/io/GenericFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/GenericFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o -MF CMakeFiles/dolfin.dir/io/File.cpp.o.d -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp: In member function ‘void dolfin::File::init(MPI_Comm, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:150:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:21: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:63: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:35: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:28: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here 95 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here 101 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here 107 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here 113 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_smake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' tring]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:119:12: required from here 119 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here 125 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here 131 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here 137 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here 143 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:151:14: required from here 151 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here 95 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here 101 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here 107 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here 113 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here 125 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here 131 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here 137 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here 143 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static hid_t dolfin::HDF5Interface::open_file(MPI_Comm, std::string, std::string, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:96:10: warning: unused variable ‘status’ [-Wunused-variable] 96 | herr_t status = H5Pclose(plist_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::close_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:104:10: warning: unused variable ‘status’ [-Wunused-variable] 104 | herr_t status = H5Fclose(hdf5_file_handle); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::flush_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:110:10: warning: unused variable ‘status’ [-Wunused-variable] 110 | herr_t status = H5Fflush(hdf5_file_handle, H5F_SCOPE_GLOBAL); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::string dolfin::HDF5Interface::get_attribute_type(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:135:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 135 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::delete_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:196:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 196 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::vector > dolfin::HDF5Interface::list_attributes(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:234:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 234 | herr_t status = H5Aiterate2(dset_id, H5_INDEX_NAME, H5_ITER_INC, &n, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:250:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 250 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:272:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 272 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_dataset(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:303:10: warning: unused variable ‘status’ [-Wunused-variable] 303 | herr_t status = H5Pclose(lapl_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::add_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:336:14: warning: unused variable ‘status’ [-Wunused-variable] 336 | herr_t status = H5Gclose(group_id_vis); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::dataset_rank(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:359:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 359 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector dolfin::HDF5Interface::get_dataset_shape(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:387:13: warning: unused variable ‘ndims’ [-Wunused-variable] 387 | const int ndims = H5Sget_simple_extent_dims(space, size.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:391:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 391 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::num_datasets_in_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:405:10: warning: unused variable ‘status’ [-Wunused-variable] 405 | herr_t status = H5Gget_info_by_name(hdf5_file_handle, group_name.c_str(), | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector > dolfin::HDF5Interface::dataset_list(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:418:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 418 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfin.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/pugixml.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5File.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Mesh&, std::size_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:446:24: warning: unused variable ‘num_cells’ [-Wunused-variable] 446 | const std::int64_t num_cells | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:918:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 918 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435, from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:23: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::read(dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1067:21: warning: unused variable ‘num_global_dofs’ [-Wunused-variable] 1067 | const std::size_t num_global_dofs = vector_shape[0]; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:172:31: required from here 172 | HDF5Interface::write_dataset(_hdf5_file_id, dataset_name, local_data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | local_range, global_size, mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here 181 | HDF5Interface::add_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here 222 | HDF5Interface::get_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:257:30: required from here 257 | HDF5Interface::read_dataset(_hdf5_file_id, dataset_name, local_range, data); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:465:33: required from here 465 | HDF5Interface::add_attribute(_hdf5_file_id, topology_dataset, "celltype", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 | CellType::type2string(cell_type)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1046:30: required from here 1046 | HDF5Interface::read_dataset(_hdf5_file_id, cells_dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 | cell_range, input_cells); | ~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1058:30: required from here 1058 | HDF5Interface::read_dataset(_hdf5_file_id, cell_dofs_dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 | std::make_pair(x_cell_dofs.front(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 | x_cell_dofs.back()), | ~~~~~~~~~~~~~~~~~~~~ 1061 | input_cell_dofs); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1640:33: required from here 1640 | HDF5Interface::get_attribute(_hdf5_file_id, topology_path, "celltype", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1641 | cell_type_str); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1820:30: required from here 1820 | HDF5Interface::read_dataset(_hdf5_file_id, topology_path, cell_data_range, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1821 | topology_data); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here 181 | HDF5Interface::add_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here 222 | HDF5Interface::get_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long int; std::string = std::__cxx11::basic_string]’ 277 | HDF5Interface::write_dataset(_hdf5_file_id, dset_name, data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | range, global_size, use_mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:450:15: required from here 450 | write_data(topology_dataset, topological_data, global_size, mpi_io); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = int; std::string = std::__cxx11::basic_string]’ 277 | HDF5Interface::write_dataset(_hdf5_file_id, dset_name, data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | range, global_size, use_mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:925:13: required from here 925 | write_data(name + "/cell_dofs", cell_dofs, global_size, mpi_io); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 277 | HDF5Interface::write_dataset(_hdf5_file_id, dset_name, data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | range, global_size, use_mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:929:13: required from here 929 | write_data(name + "/x_cell_dofs", x_cell_dofs, global_size, mpi_io); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1191 | HDF5Interface::add_attribute(_hdf5_file_id, name, "dimension", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 | mesh_values.dim()); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here 1085 | write_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1257 | HDF5Interface::get_attribute(_hdf5_file_id, name, "dimension", dim); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here 1091 | read_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1191 | HDF5Interface::add_attribute(_hdf5_file_id, name, "dimension", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 | mesh_values.dim()); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here 1085 | write_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1257 | HDF5Interface::get_attribute(_hdf5_file_id, name, "dimension", dim); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here 1091 | read_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -MF CMakeFiles/dolfin.dir/io/SVGFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/SVGFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -MF CMakeFiles/dolfin.dir/io/RAWFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/RAWFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/VTKWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/VTKFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DOM.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp: In static member function ‘static void dolfin::X3DOM::add_menu_color_tab(pugi::xml_node&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp:933:18: warning: variable ‘br_node’ set but not used [-Wunused-but-set-variable] 933 | pugi::xml_node br_node = xml_node.append_child("br"); | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::load_xml_doc(pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:403:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 403 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:26: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::save_xml_doc(const pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:467:63: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 467 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_global_to_cell_dof(std::vector > >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:212:23: warning: unused variable ‘D’ [-Wunused-variable] 212 | const std::size_t D = mesh.topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_dof_map(std::vector >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:291:23: warning: unused variable ‘D’ [-Wunused-variable] 291 | const std::size_t D = mesh.topology().dim(); | ^ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write_checkpoint(const dolfin::Function&, std::string, double, Encoding, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:152:28: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 152 | pugi::xml_parse_result result = _xml_doc->load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:184:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 184 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write(const dolfin::Function&, double, Encoding)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:417:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 417 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::add_function(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Function&, std::string, const dolfin::Mesh&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1268:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 1268 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435, from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:20: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read(dolfin::Mesh&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1326:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1326 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read_checkpoint(dolfin::Function&, std::string, int64_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1445:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1445 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::build_mesh_quadratic(dolfin::Mesh&, const dolfin::CellType&, int64_t, int64_t, int, int, const pugi::xml_node&, const pugi::xml_node&, const boost::filesystem::path&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1566:13: warning: unused variable ‘num_edges_per_cell’ [-Wunused-variable] 1566 | const int num_edges_per_cell = cell_type.num_entities(1); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:778:29: required from here 778 | read_mesh_value_collection(mvc_int, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:792:29: required from here 792 | read_mesh_value_collection(mvc, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:797:29: required from here 797 | read_mesh_value_collection(mvc, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' olfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1119:21: required from here 1119 | read_mesh_function(mf, name); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1127:21: required from here 1127 | read_mesh_function(meshfunction, name); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1137:21: required from here 1137 | read_mesh_function(meshfunction, name); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here 606 | add_data_item(comm, xml_node, h5_id, h5_path, x_int, shape, number_type); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1949 | HDF5Interface::add_attribute(h5_id, h5_path, "partition", partitions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here 606 | add_data_item(comm, xml_node, h5_id, h5_path, x_int, shape, number_type); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:391:16: required from here 391 | add_data_item(_mpi_comm.comm(), attribute_node, h5_id, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | "/VisualisationVector/0", data_values, {num_values, width}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1293:16: required from here 1293 | add_data_item(mpi_comm, fe_attribute_node, h5_id, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1294 | h5_path + "/x_cell_dofs", x_cell_dofs, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | {num_x_cell_dofs_global, 1}, "UInt"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long unsigned int; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1509:31: required from here 1509 | = get_dataset(_mpi_comm.comm(), cells_dataitem, parent_path); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = int; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1526:36: required from here 1526 | = get_dataset(_mpi_comm.comm(), cell_dofs_dataitem, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1527 | parent_path, | ~~~~~~~~~~~~ 1528 | std::make_pair(x_cell_dofs.front(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1529 | x_cell_dofs.back())); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = double; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1541:26: required from here 1541 | = get_dataset(_mpi_comm.comm(), vector_dataitem, parent_path, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1542 | input_vector_range); | ~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long int; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1729:55: required from here 1729 | const auto topology_data = get_dataset(local_mesh_data.mpi_comm(), | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1730 | topology_dataset_node, | ~~~~~~~~~~~~~~~~~~~~~~ 1731 | relative_path); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1949 | HDF5Interface::add_attribute(h5_id, h5_path, "partition", partitions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here 606 | add_data_item(comm, xml_node, h5_id, h5_path, x_int, shape, number_type); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1827:16: required from ‘static void dolfin::XDMFFile::add_topology_data(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Mesh&, int) [with T = long int; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1827 | add_data_item(comm, topology_node, h5_id, h5_path, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1828 | topology_data, shape, number_type); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1159:36: required from here 1159 | add_topology_data(comm, grid_node, h5_id, path_prefix, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 | mesh, tdim); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLTable.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -MF CMakeFiles/dolfin.dir/io/xmlutils.cpp.o.d -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/xmlutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLVector.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/Amesos2LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/BelosKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XYZFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XYZFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/BlockMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/BlockVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/CoordinateMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/DefaultFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/GenericLinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/Ifpack2Preconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/GenericMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -MF CMakeFiles/dolfin.dir/la/IndexMap.cpp.o.d -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/IndexMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/KrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/LinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/LinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/MueluPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScLinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp: In member function ‘void dolfin::PETScKrylovSolver::monitor(bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:500:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 500 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:29: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScObject.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SLEPcEigenSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o -MF CMakeFiles/dolfin.dir/la/solve.cpp.o.d -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -MF CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o.d -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TensorLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::insert_full_rows_local(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:261:21: warning: unused variable ‘ghosted_size0’ [-Wunused-variable] 261 | const std::size_t ghosted_size0 = | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::apply()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:384:21: warning: unused variable ‘proc_number’ [-Wunused-variable] 384 | const std::size_t proc_number = _mpi_comm.rank(); | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TpetraFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TpetraMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TpetraVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -MF CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o.d -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TrilinosParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -MF CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o.d -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/test_nullspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -MF CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o.d -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/VectorSpaceBasis.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o -MF CMakeFiles/dolfin.dir/log/Event.cpp.o.d -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o -MF CMakeFiles/dolfin.dir/log/log.cpp.o.d -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/log.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o -MF CMakeFiles/dolfin.dir/log/LogManager.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/LogManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o -MF CMakeFiles/dolfin.dir/log/Logger.cpp.o.d -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o -MF CMakeFiles/dolfin.dir/log/LogStream.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/LogStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o -MF CMakeFiles/dolfin.dir/log/Progress.cpp.o.d -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Progress.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o -MF CMakeFiles/dolfin.dir/math/basic.cpp.o.d -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/basic.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -MF CMakeFiles/dolfin.dir/math/Lagrange.cpp.o.d -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/Lagrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o -MF CMakeFiles/dolfin.dir/log/Table.cpp.o.d -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o -MF CMakeFiles/dolfin.dir/math/Legendre.cpp.o.d -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/legendre.hpp:16, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp:24: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Cell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Cell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -MF CMakeFiles/dolfin.dir/mesh/CellType.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/CellType.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/DynamicMeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Edge.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Edge.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Face.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Face.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/DistributedMeshTools.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/FacetCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Facet.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Facet.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/IntervalCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/HexahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/LocalMeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshConnectivity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshDomains.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshGeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshHierarchy.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshQuality.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:149:42: warning: variable ‘insert’ set but not used [-Wunused-but-set-variable] 149 | std::pair insert | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:167:21: warning: unused variable ‘num_cells’ [-Wunused-variable] 167 | const std::size_t num_cells = mesh.num_cells(); | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:204:35: warning: unused variable ‘colors_old’ [-Wunused-variable] 204 | const std::vector& colors_old = mesh_coloring->second.first; | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp: In static member function ‘static int32_t dolfin::MeshPartitioning::distribute_cells(MPI_Comm, const dolfin::LocalMeshData&, const std::vector&, const std::map >&, boost::multi_array&, std::vector&, std::vector&, std::map >&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp:727:21: warning: unused variable ‘num_local_cells’ [-Wunused-variable] 727 | const std::size_t num_local_cells = mesh_data.topology.cell_vertices.size(); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshTopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/PeriodicBoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/PointCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_overlap(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: warning: loop variable ‘cutting’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: note: use reference type to prevent copying 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_interface(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: warning: loop variable ‘cut_i’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 931 | for (const auto cut_i: cmap) | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: note: use reference type to prevent copying 931 | for (const auto cut_i: cmap) | ^~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: warning: loop variable ‘boundary_cell_index_j’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: note: use reference type to prevent copying 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ | & make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/QuadrilateralCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/SubDomain.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/SubMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/TetrahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/TriangleCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/TopologyComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -MF CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp: In member function ‘void dolfin::MultiStageScheme::_check_arguments()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 228 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: note: use reference type to prevent copying 228 | for (const auto bc: _bcs) | ^~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 260 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: note: use reference type to prevent copying 260 | for (const auto bc: _bcs) | ^~ | & make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/RKSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/PointIntegralSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/NewtonSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp: In member function ‘void dolfin::PETScSNESSolver::set_linear_solver_parameters()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:520:79: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 520 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:35: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In constructor ‘dolfin::PETScTAOSolver::PETScTAOSolver(MPI_Comm, std::string, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:99:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 99 | ierr = TaoSetHessianRoutine(_tao, _matH.mat(), _matP.mat(), nullptr, nullptr); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:34, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:31: /usr/include/petsc/petsctao.h:361:87: note: declared here 361 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::init(dolfin::OptimisationProblem&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:226:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use "TaoSetSolution()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 226 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:328:88: note: declared here 328 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetSolution()", ) static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:237:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use "TaoSetObjectiveAndGradient()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 237 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, FormFunctionGradient, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:357:100: note: declared here 357 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetObjectiveAndGradient()", ) static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:239:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 239 | ierr = TaoSetHessianRoutine(_tao, nullptr, nullptr, FormHessian, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:361:87: note: declared here 361 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In static member function ‘static PetscErrorCode dolfin::PETScTAOSolver::FormHessian(Tao, Vec, Mat, Mat, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:391:47: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 391 | PetscErrorCode ierr = TaoSetHessianRoutine(tao, nullptr, H, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 392 | nullptr, nullptr); | ~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:361:87: note: declared here 361 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:580:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 580 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/GlobalParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘std::size_t dolfin::TAOLinearBoundSolver::solve(const dolfin::PETScMatrix&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:175:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use "TaoSetSolution()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 175 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:29: /usr/include/petsc/petsctao.h:328:88: note: declared here 328 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetSolution()", ) static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:184:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use "TaoSetObjectiveAndGradient()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 184 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 185 | __TAOFormFunctionGradientQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:357:100: note: declared here 357 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetObjectiveAndGradient()", ) static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:188:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 188 | ierr = TaoSetHessianRoutine(_tao, A->mat(), A->mat(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | __TAOFormHessianQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:361:87: note: declared here 361 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘void dolfin::TAOLinearBoundSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:416:86: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 416 | ierr = KSPMonitorSet(ksp, (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:31: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In static member function ‘static PetscErrorCode dolfin::TAOLinearBoundSolver::__TAOMonitor(Tao, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:54: warning: unknown conversion type character ‘\x09’ in format [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:59: warning: format ‘%g’ expects argument of type ‘double’, but argument 3 has type ‘PetscInt’ {aka ‘int’} [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ~^ ~~~ | | | | | PetscInt {aka int} | double | %d /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:41: warning: too many arguments for format [-Wformat-extra-args] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp In file included from /usr/include/c++/14/set:62, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.h:22, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:21: In member function ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:1705:25: warning: ‘MEM[(struct _Rb_tree_node_base * &)&temp + 24]’ may be used uninitialized [-Wmaybe-uninitialized] 1705 | if (__x._M_root() != nullptr) | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.h:26: /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:191:45: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_color’ may be used uninitialized [-Wmaybe-uninitialized] 191 | _M_header._M_color = __from._M_header._M_color; | ~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:193:44: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_left’ may be used uninitialized [-Wmaybe-uninitialized] 193 | _M_header._M_left = __from._M_header._M_left; | ~~~~~~~~~~~~~~~~~^~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:194:45: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_right’ may be used uninitialized [-Wmaybe-uninitialized] 194 | _M_header._M_right = __from._M_header._M_right; | ~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:196:30: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_node_count’ may be used uninitialized [-Wmaybe-uninitialized] 196 | _M_node_count = __from._M_node_count; | ~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:1705:25: warning: ‘MEM[(struct _Rb_tree_node_base * &)&temp + 24]’ may be used uninitialized [-Wmaybe-uninitialized] 1705 | if (__x._M_root() != nullptr) | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:193:44: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_left’ may be used uninitialized [-Wmaybe-uninitialized] 193 | _M_header._M_left = __from._M_header._M_left; | ~~~~~~~~~~~~~~~~~^~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:194:45: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_right’ may be used uninitialized [-Wmaybe-uninitialized] 194 | _M_header._M_right = __from._M_header._M_right; | ~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:196:30: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_node_count’ may be used uninitialized [-Wmaybe-uninitialized] 196 | _M_node_count = __from._M_node_count; | ~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -MF CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/BisectionRefinement1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -MF CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/LocalMeshCoarsening.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/ParallelRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfin.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/refine.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -MF CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/PlazaRefinementND.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o -MF CMakeFiles/dolfin.dir/ts/CVode.cpp.o.d -o CMakeFiles/dolfin.dir/ts/CVode.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ts/CVode.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp: In static member function ‘static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp:323:19: warning: unused variable ‘twin_marker’ [-Wunused-variable] 323 | const int twin_marker = refinement_markers[bisection_twin]; | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Linking CXX shared library libdolfin.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects 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CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib64/libboost_timer.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libboost_iostreams.so /lib64/libhdf5.so /lib64/libz.so /usr/lib64/libboost_regex.so /usr/lib64/libpetsc.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2019.1.0 libdolfin.so.2019.1 libdolfin.so make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles 0 ++ python3 -c 'import ffc; print(ffc.get_include_path())' + ffc_path=/usr/lib/python3.13/site-packages/ffc/backends/ufc ++ pkgconf --cflags eigen3 + eigen_options=-I/usr/include/eigen3 + sed -r -i 's|Cflags:.*|\0 -I/usr/lib/python3.13/site-packages/ffc/backends/ufc -I/usr/include/eigen3|' dolfin.pc + /usr/bin/make install DESTDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build 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'/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 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Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/SparsityPattern.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/SUNDIALSNVector.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/TensorLayout.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/test_nullspace.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/TpetraFactory.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/TpetraMatrix.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/TpetraVector.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/TrilinosParameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/TrilinosPreconditioner.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/Vector.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/la/VectorSpaceBasis.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/dolfin_log.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/Event.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/Logger.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/log.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/LogLevel.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/LogManager.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/LogStream.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/Progress.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/log/Table.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/math/basic.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/math/dolfin_math.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/math/Lagrange.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/math/Legendre.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/BoundaryComputation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/BoundaryMesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Cell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/CellType.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/DistributedMeshTools.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/dolfin_mesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/DomainBoundary.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/DynamicMeshEditor.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Edge.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Face.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/FacetCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Facet.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/HexahedronCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/IntervalCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/LocalMeshData.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/LocalMeshValueCollection.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshColoring.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshConnectivity.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshData.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshDomains.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshEditor.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshEntity.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshEntityIteratorBase.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshEntityIterator.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshFunction.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshGeometry.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Mesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshQuality.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshRelation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/PointCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/SubDomain.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/SubMesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/dolfin copying dolfin/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin creating build/lib.linux-x86_64-cpython-313/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-x86_64-cpython-313/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-x86_64-cpython-313/dolfin/common creating build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/function.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-x86_64-cpython-313/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-x86_64-cpython-313/dolfin/function creating build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-x86_64-cpython-313/dolfin/fem creating build/lib.linux-x86_64-cpython-313/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-x86_64-cpython-313/dolfin/la creating build/lib.linux-x86_64-cpython-313/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/io creating build/lib.linux-x86_64-cpython-313/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-x86_64-cpython-313/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-x86_64-cpython-313/dolfin/jit creating build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-x86_64-cpython-313/dolfin/mesh creating build/lib.linux-x86_64-cpython-313/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-x86_64-cpython-313/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-x86_64-cpython-313/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-x86_64-cpython-313/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-x86_64-cpython-313/dolfin/multistage creating build/lib.linux-x86_64-cpython-313/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin/parameter creating build/lib.linux-x86_64-cpython-313/dolfin_utils creating build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert creating build/lib.linux-x86_64-cpython-313/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-x86_64-cpython-313/dolfin_utils/test creating build/lib.linux-x86_64-cpython-313/fenics copying fenics/__init__.py -> build/lib.linux-x86_64-cpython-313/fenics running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:202 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:21 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Checking for package 'PETSc4Py' -- PETSc4py could not be found. Be sure to set PYTHONPATH appropriately. (missing: PETSC4PY_INCLUDE_DIRS PETSC4PY_VERSION) Traceback (most recent call last): File "", line 1, in import mpi4py; print(mpi4py.get_include()) ^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'mpi4py' -- Could NOT find MPI4PY (missing: MPI4PY_INCLUDE_DIR) -- Configuring done (1.7s) jfa: mpi4py not found -- Generating done (0.0s) -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313 Change Dir: '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' [ 4%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/dolfin.cpp.o -MF CMakeFiles/cpp.dir/src/dolfin.cpp.o.d -o CMakeFiles/cpp.dir/src/dolfin.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/dolfin.cpp [ 9%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/parameter.cpp.o -MF CMakeFiles/cpp.dir/src/parameter.cpp.o.d -o CMakeFiles/cpp.dir/src/parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/parameter.cpp [ 14%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/adaptivity.cpp.o -MF CMakeFiles/cpp.dir/src/adaptivity.cpp.o.d -o CMakeFiles/cpp.dir/src/adaptivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/adaptivity.cpp [ 19%] Building CXX object CMakeFiles/cpp.dir/src/ale.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ale.cpp.o -MF CMakeFiles/cpp.dir/src/ale.cpp.o.d -o CMakeFiles/cpp.dir/src/ale.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/ale.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/src/common.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/common.cpp.o -MF CMakeFiles/cpp.dir/src/common.cpp.o.d -o CMakeFiles/cpp.dir/src/common.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/common.cpp [ 28%] Building CXX object CMakeFiles/cpp.dir/src/fem.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/fem.cpp.o -MF CMakeFiles/cpp.dir/src/fem.cpp.o.d -o CMakeFiles/cpp.dir/src/fem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/fem.cpp [ 33%] Building CXX object CMakeFiles/cpp.dir/src/function.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/function.cpp.o -MF CMakeFiles/cpp.dir/src/function.cpp.o.d -o CMakeFiles/cpp.dir/src/function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/function.cpp [ 38%] Building CXX object CMakeFiles/cpp.dir/src/generation.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/generation.cpp.o -MF CMakeFiles/cpp.dir/src/generation.cpp.o.d -o CMakeFiles/cpp.dir/src/generation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/generation.cpp [ 42%] Building CXX object CMakeFiles/cpp.dir/src/geometry.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/geometry.cpp [ 47%] Building CXX object CMakeFiles/cpp.dir/src/graph.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/graph.cpp.o -MF CMakeFiles/cpp.dir/src/graph.cpp.o.d -o CMakeFiles/cpp.dir/src/graph.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/graph.cpp [ 52%] Building CXX object CMakeFiles/cpp.dir/src/log.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/log.cpp.o -MF CMakeFiles/cpp.dir/src/log.cpp.o.d -o CMakeFiles/cpp.dir/src/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/log.cpp [ 57%] Building CXX object CMakeFiles/cpp.dir/src/math.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/math.cpp.o -MF CMakeFiles/cpp.dir/src/math.cpp.o.d -o CMakeFiles/cpp.dir/src/math.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/math.cpp [ 61%] Building CXX object CMakeFiles/cpp.dir/src/mesh.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/mesh.cpp.o -MF CMakeFiles/cpp.dir/src/mesh.cpp.o.d -o CMakeFiles/cpp.dir/src/mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:27: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = bool; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 206 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1707:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1707 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:429:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 206 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1707:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1707 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:430:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = double; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 206 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1707:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1707 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:431:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = long unsigned int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 206 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1707:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1707 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:432:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ [ 66%] Building CXX object CMakeFiles/cpp.dir/src/multistage.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/multistage.cpp.o -MF CMakeFiles/cpp.dir/src/multistage.cpp.o.d -o CMakeFiles/cpp.dir/src/multistage.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/multistage.cpp [ 71%] Building CXX object CMakeFiles/cpp.dir/src/ts.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ts.cpp.o -MF CMakeFiles/cpp.dir/src/ts.cpp.o.d -o CMakeFiles/cpp.dir/src/ts.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/ts.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/src/io.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/io.cpp.o -MF CMakeFiles/cpp.dir/src/io.cpp.o.d -o CMakeFiles/cpp.dir/src/io.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/io.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/io.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ [ 80%] Building CXX object CMakeFiles/cpp.dir/src/la.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/la.cpp.o -MF CMakeFiles/cpp.dir/src/la.cpp.o.d -o CMakeFiles/cpp.dir/src/la.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/la.cpp [ 85%] Building CXX object CMakeFiles/cpp.dir/src/nls.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/nls.cpp.o -MF CMakeFiles/cpp.dir/src/nls.cpp.o.d -o CMakeFiles/cpp.dir/src/nls.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/nls.cpp [ 90%] Building CXX object CMakeFiles/cpp.dir/src/refinement.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/refinement.cpp.o -MF CMakeFiles/cpp.dir/src/refinement.cpp.o.d -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -MF CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o.d -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-313/dolfin/cpp.cpython-313-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,cpp.cpython-313-x86_64-linux-gnu.so -o /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-313/dolfin/cpp.cpython-313-x86_64-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1.0 /usr/lib64/libboost_timer.so /lib64/libhdf5.so /usr/lib64/libpetsc.so /usr/bin/strip /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-313/dolfin/cpp.cpython-313-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' [100%] Built target cpp gmake[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-313/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pAnvZQ + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + '[' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT ++ dirname /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build + mkdir /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + cd build + /usr/bin/make install DESTDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving 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'/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-order -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-plot -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/dolfin.conf -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-version -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/fenics-version -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-get-demos -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo -- Installing: 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin copying build/lib.linux-x86_64-cpython-313/dolfin/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-313/dolfin/common/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-313/dolfin/common/plotting.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-313/dolfin/common/timer.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/argument.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/constant.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/expression.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/function.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/functionspace.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/jit.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/multimeshfunction.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/multimeshfunctionspace.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-313/dolfin/function/specialfunctions.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/adaptivesolving.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/assembling.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/dirichletbc.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/errorcontrolgenerator.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/form.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/formmanipulations.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/interpolation.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/multimeshdirichletbc.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/norms.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/problem.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/projection.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/solvers.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-313/dolfin/fem/solving.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-313/dolfin/la/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-313/dolfin/la/solver.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io copying build/lib.linux-x86_64-cpython-313/dolfin/io/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-313/dolfin/jit/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-313/dolfin/jit/jit.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-313/dolfin/jit/pybind11jit.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/ale.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/meshfunction.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/meshvaluecollection.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/subdomain.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/svgtools.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-313/dolfin/mesh/ufl_util.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-313/dolfin/multistage/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-313/dolfin/multistage/factorize.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-313/dolfin/multistage/multistagescheme.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-313/dolfin/multistage/multistagesolvers.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-313/dolfin/multistage/rushlarsenschemes.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter copying build/lib.linux-x86_64-cpython-313/dolfin/parameter/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter copying build/lib.linux-x86_64-cpython-313/dolfin/cpp.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert/abaqus.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert/meshconvert.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-313/dolfin_utils/meshconvert/xml_writer.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-313/dolfin_utils/test/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-313/dolfin_utils/test/fixtures.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-313/dolfin_utils/test/paths.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-313/dolfin_utils/test/skips.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics copying build/lib.linux-x86_64-cpython-313/fenics/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/timer.py to timer.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/argument.py to argument.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/constant.py to constant.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/expression.py to expression.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/function.py to function.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/functionspace.py to functionspace.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/jit.py to jit.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/assembling.py to assembling.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/form.py to form.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/interpolation.py to interpolation.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/norms.py to norms.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/problem.py to problem.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/projection.py to projection.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/solvers.py to solvers.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/solving.py to solving.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/solver.py to solver.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/jit.py to jit.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/ale.py to ale.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/subdomain.py to subdomain.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/svgtools.py to svgtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/factorize.py to factorize.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-313.pyc /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/paths.py to paths.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/skips.py to skips.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpgdztxz_p.py' /usr/bin/python3 /tmp/tmpgdztxz_p.py /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' removing /tmp/tmpgdztxz_p.py running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics_dolfin-2019.1.0-py3.13.egg-info running install_scripts + rm -rfv /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/__pycache__ + sed -r -i '1 {s|#!/usr/bin/env python.*|#!/usr/bin/python3|}' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-order /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-plot /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-convert + rm /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/dolfin.conf + chrpath /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-x86_64-linux-gnu.so /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-x86_64-linux-gnu.so: RUNPATH=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64 + chrpath --delete /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-x86_64-linux-gnu.so + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2019.1.0.post0-52.fc42 --unique-debug-suffix -2019.1.0.post0-52.fc42.x86_64 --unique-debug-src-base dolfin-2019.1.0.post0-52.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/dolfin-2019.1.0.post0-52.fc42.x86_64 9132 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-x86_64-linux-gnu.so Found '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT' in installed files; aborting + : + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/dolfin-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/fenics-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/dolfin-get-demos from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/plotting.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/plotting.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/timer.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/argument.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/constant.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/expression.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/functionspace.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/functionspace.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/jit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/expression.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/multimeshfunction.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/multimeshfunctionspace.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/specialfunctions.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/function.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/adaptivesolving.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/adaptivesolving.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/assembling.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/dirichletbc.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/interpolation.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/errorcontrolgenerator.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/multimeshdirichletbc.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/form.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/norms.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/formmanipulations.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/problem.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/projection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/solvers.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/solving.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/solving.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/__pycache__/solver.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/__pycache__/pybind11jit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/__pycache__/jit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/ale.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/svgtools.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/meshfunction.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/meshvaluecollection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/svgtools.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/ufl_util.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__pycache__/subdomain.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/factorize.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/multistagescheme.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/multistagescheme.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/multistagesolvers.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/function.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/rushlarsenschemes.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/abaqus.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/abaqus.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/meshconvert.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/xml_writer.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/fixtures.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/paths.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/paths.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/skips.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/meshconvert.cpython-313.opt-1.pyc: replacing with normalized version Scanned 196 directories and 1194 files, processed 67 inodes, 67 modified (22 replaced + 45 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/dolfin-2019.1.0.post0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.aOjY4P + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + ctest -V -j2 UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/DartConfiguration.tcl Test project /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 Constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! + RPM_EC=0 ++ jobs -p + exit 0 Processing files: dolfin-2019.1.0.post0-52.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.B5lQRR + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + cd dolfin-2019.1.0.post0 + DOCDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/doc/dolfin + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/doc/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/README.rst /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/doc/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Qxpigz + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + cd dolfin-2019.1.0.post0 + LICENSEDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/COPYING /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/COPYING.LESSER /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/AUTHORS /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Provides: dolfin = 2019.1.0.post0-52.fc42 dolfin(x86-64) = 2019.1.0.post0-52.fc42 libdolfin.so.2019.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash libboost_filesystem.so.1.83.0()(64bit) libboost_iostreams.so.1.83.0()(64bit) libboost_program_options.so.1.83.0()(64bit) libboost_timer.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpetsc.so.3.20()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dolfin-devel-2019.1.0.post0-52.fc42.x86_64 Provides: dolfin-devel = 2019.1.0.post0-52.fc42 dolfin-devel(x86-64) = 2019.1.0.post0-52.fc42 pkgconfig(dolfin) = 2019.1.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libdolfin.so.2019.1()(64bit) Processing files: python3-dolfin-2019.1.0.post0-52.fc42.x86_64 Provides: python-dolfin = 2019.1.0.post0-52.fc42 python3-dolfin = 2019.1.0.post0-52.fc42 python3-dolfin(x86-64) = 2019.1.0.post0-52.fc42 python3.13-dolfin = 2019.1.0.post0-52.fc42 python3.13dist(fenics-dolfin) = 2019.1 python3dist(fenics-dolfin) = 2019.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.13dist(fenics-dijitso) < 2019.2~~ with python3.13dist(fenics-dijitso) >= 2019.1) (python3.13dist(fenics-ffc) < 2019.2~~ with python3.13dist(fenics-ffc) >= 2019.1) (python3.13dist(fenics-ufl) < 2019.2~~ with python3.13dist(fenics-ufl) >= 2019.1) /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libdolfin.so.2019.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) python3.13dist(pkgconfig) python3.13dist(pybind11) >= 2.2.4 rtld(GNU_HASH) Obsoletes: python-dolfin < 2019.1.0.post0-52.fc42 Processing files: dolfin-doc-2019.1.0.post0-52.fc42.noarch Provides: dolfin-doc = 2019.1.0.post0-52.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash Processing files: dolfin-debugsource-2019.1.0.post0-52.fc42.x86_64 Provides: dolfin-debugsource = 2019.1.0.post0-52.fc42 dolfin-debugsource(x86-64) = 2019.1.0.post0-52.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dolfin-debuginfo-2019.1.0.post0-52.fc42.x86_64 Provides: debuginfo(build-id) = 08f6162d480d1dfa0404a5b11e8e86aeafa21e0b dolfin-debuginfo = 2019.1.0.post0-52.fc42 dolfin-debuginfo(x86-64) = 2019.1.0.post0-52.fc42 libdolfin.so.2019.1.0-2019.1.0.post0-52.fc42.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dolfin-debugsource(x86-64) = 2019.1.0.post0-52.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT Wrote: /builddir/build/RPMS/dolfin-doc-2019.1.0.post0-52.fc42.noarch.rpm Wrote: /builddir/build/RPMS/dolfin-2019.1.0.post0-52.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debugsource-2019.1.0.post0-52.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-dolfin-2019.1.0.post0-52.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-devel-2019.1.0.post0-52.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debuginfo-2019.1.0.post0-52.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.2bQhyE + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + test -d /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/dolfin-2019.1.0.post0-build + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild dolfin-2019.1.0.post0-52.fc42.src.rpm Finish: build phase for dolfin-2019.1.0.post0-52.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1727283753.895608/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-52.fc42.src.rpm) Config(child) 12 minutes 38 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "x86_64" }, { "name": "dolfin-doc", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "noarch" }, { "name": "dolfin-devel", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "x86_64" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "src" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "x86_64" }, { "name": "dolfin-debugsource", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "x86_64" }, { "name": "dolfin-debuginfo", "epoch": null, "version": "2019.1.0.post0", "release": "52.fc42", "arch": "x86_64" } ] } RPMResults finished