Mock Version: 2.12 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/R-pbdMPI.spec'], chrootPath='/var/lib/mock/epel-7-ppc64le-1629796790.663817/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3x9f1e3a:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3x9f1e3a:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '63047c9584be4a4e8d50621f074af0ae', '-D', '/var/lib/mock/epel-7-ppc64le-1629796790.663817/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3x9f1e3a:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/R-pbdMPI.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le Wrote: /builddir/build/SRPMS/R-pbdMPI-0.4.3-3.el7.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/R-pbdMPI.spec'], chrootPath='/var/lib/mock/epel-7-ppc64le-1629796790.663817/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3x9f1e3a:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3x9f1e3a:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '4c8f44f1978747328e265b8c4947a1c6', '-D', '/var/lib/mock/epel-7-ppc64le-1629796790.663817/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3x9f1e3a:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/R-pbdMPI.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.KZT1Cq + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pbdMPI + /usr/bin/mkdir -p pbdMPI + cd pbdMPI + /usr/bin/gzip -dc /builddir/build/SOURCES/pbdMPI_0.4-3.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LkBOjA + umask 022 + cd /builddir/build/BUILD + cd pbdMPI + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pcuH0J + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le ++ dirname /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le + cd pbdMPI + mkdir -p /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/lib64/R/library /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/lib64/openmpi/lib + . /etc/profile.d/modules.sh ++++ /bin/ps -p 31 -ocomm= +++ /bin/basename sh ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ MODULESHOME=/usr/share/Modules +++ export MODULESHOME +++ '[' '' = '' ']' +++ LOADEDMODULES= +++ export LOADEDMODULES +++ '[' /usr/share/Modules/modulefiles:/etc/modulefiles = '' ']' + module load mpi/openmpi-ppc64le ++ /usr/bin/modulecmd sh load mpi/openmpi-ppc64le + eval LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/openmpi-ppc64le' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/openmpi/bin' ';export' 'MPI_BIN;MPI_COMPILER=openmpi-ppc64le' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-ppc64le' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/openmpi' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/openmpi-ppc64le' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/openmpi/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/openmpi-ppc64le' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_openmpi' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/openmpi-ppc64le' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin' ';export' 'PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/openmpi-ppc64le' ';export' '_LMFILES_;' ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/man:/usr/local/share/man ++ export MANPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-ppc64le ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin ++ export PATH ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi ++ export PYTHONPATH ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ + export 'CFLAGS= -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8' + CFLAGS=' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8' + MPI_LIB_PATH=/usr/lib64/openmpi/lib + MPI_INCLUDE_PATH=/usr/include/openmpi-ppc64le + MPI_TYPE=OPENMPI + OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_orte_rsh_agent=/bin/false + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/lib64/R/library pbdMPI * installing *source* package 'pbdMPI' ... ** package 'pbdMPI' successfully unpacked and MD5 sums checked ** using staged installation setting mpi include path from MPI_INCLUDE setting mpi lib path from MPI_LIB_PATH checking for sed... /usr/bin/sed checking for mpicc... mpicc checking for ompi_info... ompi_info checking for pkg-config... /usr/bin/pkg-config >> TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ... checking for openpty in -lutil... yes checking for main in -lpthread... yes ******************* Results of pbdMPI package configure ***************** >> MPIRUN = /usr/lib64/openmpi/bin/mpirun >> MPIEXEC = /usr/lib64/openmpi/bin/mpiexec >> ORTERUN = /usr/lib64/openmpi/bin/orterun >> TMP_INC = >> TMP_LIB = >> TMP_LIBNAME = >> TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ... >> MPI_ROOT = >> MPITYPE = OPENMPI >> MPI_INCLUDE_PATH = /usr/include/openmpi-ppc64le >> MPI_LIBPATH = /usr/lib64/openmpi/lib >> MPI_LIBNAME = >> MPI_LIBS = -lutil -lpthread >> MPI_DEFS = -DMPI2 >> MPI_INCL2 = >> MPI_LDFLAGS = >> PKG_CPPFLAGS = -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI >> PKG_LIBS = -L/usr/lib64/openmpi/lib -lmpi -lutil -lpthread >> PROF_LDFLAGS = >> ENABLE_LD_LIBRARY_PATH = no ************************************************************************* configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.r ** libs echo "MPIRUN = /usr/lib64/openmpi/bin/mpirun" > Makeconf echo "MPIEXEC = /usr/lib64/openmpi/bin/mpiexec" >> Makeconf echo "ORTERUN = /usr/lib64/openmpi/bin/orterun" >> Makeconf echo "TMP_INC = " >> Makeconf echo "TMP_LIB = " >> Makeconf echo "TMP_LIBNAME = " >> Makeconf echo "TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ..." >> Makeconf echo "MPI_ROOT = " >> Makeconf echo "MPITYPE = OPENMPI" >> Makeconf echo "MPI_INCLUDE_PATH = /usr/include/openmpi-ppc64le" >> Makeconf echo "MPI_LIBPATH = /usr/lib64/openmpi/lib" >> Makeconf echo "MPI_LIBNAME = " >> Makeconf echo "MPI_LIBS = -lutil -lpthread" >> Makeconf echo "MPI_DEFS = -DMPI2" >> Makeconf echo "MPI_INCL2 = " >> Makeconf echo "MPI_LDFLAGS = " >> Makeconf echo "PKG_CPPFLAGS = -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI" >> Makeconf echo "PKG_LIBS = -L/usr/lib64/openmpi/lib -lmpi -lutil -lpthread" >> Makeconf echo "PROF_LDFLAGS = " >> Makeconf echo "ENABLE_LD_LIBRARY_PATH = no" >> Makeconf gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c comm_errors.c -o comm_errors.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c comm_sort_double.c -o comm_sort_double.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c comm_sort_integer.c -o comm_sort_integer.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c pkg_dl.c -o pkg_dl.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c pkg_tools.c -o pkg_tools.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd.c -o spmd.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_allgather.c -o spmd_allgather.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_allgatherv.c -o spmd_allgatherv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_allreduce.c -o spmd_allreduce.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_alltoall.c -o spmd_alltoall.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_alltoallv.c -o spmd_alltoallv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_bcast.c -o spmd_bcast.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_communicator.c -o spmd_communicator.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_communicator_spawn.c -o spmd_communicator_spawn.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_gather.c -o spmd_gather.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_gatherv.c -o spmd_gatherv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_info.c -o spmd_info.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_recv.c -o spmd_recv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_reduce.c -o spmd_reduce.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_scatter.c -o spmd_scatter.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_scatterv.c -o spmd_scatterv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_send.c -o spmd_send.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_sendrecv.c -o spmd_sendrecv.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_sendrecv_replace.c -o spmd_sendrecv_replace.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_tool.c -o spmd_tool.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_utility.c -o spmd_utility.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c spmd_wait.c -o spmd_wait.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-ppc64le -DMPI2 -DOPENMPI -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mcpu=power8 -mtune=power8 -c zzz.c -o zzz.o gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o pbdMPI.so comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o -L/usr/lib64/openmpi/lib -lmpi -lutil -lpthread -L/usr/lib64/R/lib -lR installing via 'install.libs.R' to /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/lib64/R/library/00LOCK-pbdMPI/00new/pbdMPI ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pbdMPI' finding HTML links ... done 00_pbdMPI-package html 11_d_control html 11_d_pbd_opt html aa_allgather-method html aa_allreduce-method html aa_bcast-method html aa_gather-method html aa_reduce-method html aa_scatter-method html ab_recv-method html ab_send-method html ac_irecv-method html ac_isend-method html ad_sendrecv-method html ad_sendrecv.replace-method html ae_alltoall html cc_arrange.mpi.apts html cc_comm html dd_info html dd_is.comm.null html dd_prob html dd_sourcetag html dd_wait html uu_execmpi html vv_get_jid html vv_print_cat html vv_seed html ww_comm_as_gbd html ww_comm_balance html ww_comm_read html ww_comm_write html xx_comm_Rprof html xx_comm_allpairs html xx_comm_any_all html xx_comm_base html xx_comm_dist html xx_comm_match_arg html xx_comm_pairwise html xx_comm_range html xx_comm_sort html xx_comm_stop_warning html xx_comm_timer html xx_comm_which html yy_api_apply html yy_api_task_pull html yy_get_conf_lib_winmpi html yy_pkg_tools html zz_comm_internal html zz_spmd_control html zz_spmd_internal html ** building package indices ** installing vignettes 'pbdMPI-guide.Rnw' ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdMPI) + rm -rf /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/lib64/R/library/R.css + test -d pbdMPI/src + cd pbdMPI/src + rm -f comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o pbdMPI.so Makevars + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/pbdMPI extracting debug info from /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/lib64/R/library/pbdMPI/libs/pbdMPI.so dwz: Too few files for multifile optimization /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 257 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.pMmFU0 + umask 022 + cd /builddir/build/BUILD + cd pbdMPI + MPI_LIB_PATH= + MPI_INCLUDE_PATH= + MPI_TYPE=OPENMPI + OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_orte_rsh_agent=/bin/false + /usr/bin/R CMD check pbdMPI * using log directory '/builddir/build/BUILD/pbdMPI/pbdMPI.Rcheck' * using R version 3.6.0 (2019-04-26) * using platform: powerpc64le-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'pbdMPI/DESCRIPTION' ... OK * this is package 'pbdMPI' version '0.4-3' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES' NOTE Packages which this enhances but not available for checking: 'pbdPROF', 'pbdZMQ' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'pbdMPI' can be installed ... ERROR Installation failed. See '/builddir/build/BUILD/pbdMPI/pbdMPI.Rcheck/00install.out' for details. * DONE Status: 1 ERROR, 1 NOTE See '/builddir/build/BUILD/pbdMPI/pbdMPI.Rcheck/00check.log' for details. + cat pbdMPI.Rcheck/00check.log pbdMPI.Rcheck/00install.out * using log directory '/builddir/build/BUILD/pbdMPI/pbdMPI.Rcheck' * using R version 3.6.0 (2019-04-26) * using platform: powerpc64le-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'pbdMPI/DESCRIPTION' ... OK * this is package 'pbdMPI' version '0.4-3' * checking package namespace information ... OK * checking package dependencies ... NOTE Packages which this enhances but not available for checking: 'pbdPROF', 'pbdZMQ' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'pbdMPI' can be installed ... ERROR Installation failed. See '/builddir/build/BUILD/pbdMPI/pbdMPI.Rcheck/00install.out' for details. * DONE Status: 1 ERROR, 1 NOTE * installing *source* package 'pbdMPI' ... ** package 'pbdMPI' successfully unpacked and MD5 sums checked ** using staged installation checking for sed... /usr/bin/sed checking for mpicc... F checking for ompi_info... F checking for pkg-config... /usr/bin/pkg-config Try pkg-config ... checking if pkg-config knows about OpenMPI... no >> TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ... checking for gcc... gcc -m64 -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -m64 -std=gnu99 accepts -g... yes checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no configure: error: "Cannot find mpi.h header file" ERROR: configuration failed for package 'pbdMPI' * removing '/builddir/build/BUILD/pbdMPI/pbdMPI.Rcheck/pbdMPI' + exit 0 Processing files: R-pbdMPI-0.4.3-3.el7.ppc64le Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5ASM6j + umask 022 + cd /builddir/build/BUILD + cd pbdMPI + LICENSEDIR=/builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/share/licenses/R-pbdMPI-0.4.3 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/share/licenses/R-pbdMPI-0.4.3 + cp -pr pbdMPI/COPYING /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le/usr/share/licenses/R-pbdMPI-0.4.3 + exit 0 Provides: R-pbdMPI = 0.4.3-3.el7 R-pbdMPI(ppc-64) = 0.4.3-3.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libpthread.so.0()(64bit) libutil.so.1()(64bit) rtld(GNU_HASH) Processing files: R-pbdMPI-debuginfo-0.4.3-3.el7.ppc64le Provides: R-pbdMPI-debuginfo = 0.4.3-3.el7 R-pbdMPI-debuginfo(ppc-64) = 0.4.3-3.el7 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le Wrote: /builddir/build/RPMS/R-pbdMPI-0.4.3-3.el7.ppc64le.rpm Wrote: /builddir/build/RPMS/R-pbdMPI-debuginfo-0.4.3-3.el7.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.FkqfNg + umask 022 + cd /builddir/build/BUILD + cd pbdMPI + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-pbdMPI-0.4.3-3.el7.ppc64le + exit 0 Child return code was: 0