# Copyright (c) 2014 Dave Love, Liverpool University
# Copyright (c) 2018 Dave Love, University of Manchester
# Licence: MIT, per Fedora policy

%global packname  pbdDMAT
%global rlibdir  %{_libdir}/R/library
%global cranver %(echo %version | awk -F'[.]' '{print $1"."$2"-"$3}')
# Use github source if more recent than CRAN
%global github 0

%global commit b170a3c590592950a902b0febf1bad8b97dbca2e
%global shortcommit %(c=%{commit}; echo ${c:0:7})

Name:             R-%{packname}
Version:          0.5.1
Release:          3%{?commit:.git%shortcommit}%{?dist}
Summary:          Programming with Big Data -- Distributed Matrix Methods
License:          GPLv2+
URL:              http://r-pbd.org/
%if 0%{?commit:1}
Source0:	  https://github.com/RBigData/%packname/archive/%commit/%packname-%shortcommit.tar.gz
%else
%if 0%{?github}
Source0:          https://github.com/RBigData/%packname/archive/v%cranver/%{packname}-%version.tar.gz
%else
Source0:          https://cran.r-project.org/src/contrib/Archive/pbdDMAT/%{packname}_%(echo %version | awk -F'\\.' '{print $1"."$2"-"$3}').tar.gz
%endif
%endif
Source1:	  tocbibind.sty
Requires:         R-methods R-rlecuyer R-pbdMPI >= 0.3.1 R-pbdBASE >= 0.5.0
BuildRequires:    R-devel R-methods R-rlecuyer R-pbdMPI >= 0.3.1
BuildRequires:	  R-pbdBASE >= 0.5.0 openmpi-devel tex(lastpage.sty)
BuildRequires:	  tex(multirow.sty)

%description
pbdDMAT contains high level S3 and S4 methods for creating, modifying, and
performing computations with dense, distributed matrices. This includes a
new class, 'ddmatrix', for storing all of the distributed data details. 
Computation is handled mostly by routines from the pbdBASE package.

%prep
%setup -q -c

%build
%if 0%{?github}%{?commit:1}
# Unfortunately we need to build initially at least to get DESCRIPTION
# into a suitable form to pass check and then install from that, which
# unfortunately builds again, though it's quite fast.
%_openmpi_load
export TEXINPUTS=$(dirname %SOURCE1):$TEXINPUTS
R CMD build %{packname}*
tar fx %{packname}*.tar.gz
%endif

%install
%_openmpi_load
export TEXINPUTS=$(dirname %SOURCE1):$TEXINPUTS
mkdir -p %{buildroot}%{rlibdir}
OMPI_MCA_orte_allocation_required=0 OMPI_MCA_orte_rsh_agent=/bin/false \
  R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%check
%_openmpi_load
OMPI_MCA_orte_allocation_required=0 OMPI_MCA_orte_rsh_agent=/bin/false \
  R CMD check %{packname}

%{!?_licensedir:%global license %doc}

%files
%dir %{rlibdir}/%{packname}
%license pbdDMAT/COPYING
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/html
%doc %{rlibdir}/%{packname}/DESCRIPTION
%doc %{rlibdir}/%{packname}/CITATION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/help
%{rlibdir}/%{packname}/demo
%{rlibdir}/%{packname}/examples
%{rlibdir}/%{packname}/RNACI
%{rlibdir}/%{packname}/libs
%exclude %{rlibdir}/%{packname}/tests_batch
%exclude %{rlibdir}/%{packname}/batchtests


%changelog
* Fri Sep  3 2021  <vagrant@localhost.localdomain> - 0.5.1-3b170a3c590592950a902b0febf1bad8b97dbca2e:.git%shortcommit}%{?dist}
- Use development version to fix generic function error with R 4.1
- Ship tocbibind.sty

* Thu Sep  2 2021  <vagrant@localhost.localdomain> - 0.5.1-2
- Fix Source0

* Tue Apr 23 2019 Dave Love <loveshack@fedoraproject.org> - 0.5.1-1
- New version

* Tue May  8 2018 Dave Love <loveshack@fedoraproject.org> - 0.5.0-1
- New version (corresponding to pbdR 1.0-1 release)
- Fix up to get check passing with github source

* Mon Nov 14 2016 Dave Love <loveshack@fedoraproject.org> - 0.4.2-1
- New version
- Install license

* Wed Feb 24 2016 Dave Love <loveshack@fedoraproject.org> - 0.4.0-1
- New version
- No longer noarch
- Don't BR latex

* Wed Dec 17 2014 Dave Love <d.love@liverpool.ac.uk> - 0.2.3-2
- Set MCA params when building

* Sat Nov 22 2014 Dave Love <d.love@liverpool.ac.uk> - 0.2.3-1
- initial package for Fedora