Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-pbdDEMO.spec'], chrootPath='/var/lib/mock/887114-fedora-30-x86_64-1556059092.612511/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ma_iwi10:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd8921cc6ee3b490ba2a78a6703afa7ce', '-D', '/var/lib/mock/887114-fedora-30-x86_64-1556059092.612511/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ma_iwi10:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-pbdDEMO.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-pbdDEMO-0.3.2-3.fc30.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-pbdDEMO.spec'], chrootPath='/var/lib/mock/887114-fedora-30-x86_64-1556059092.612511/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ma_iwi10:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5d48bba430ff46039ff22bd92e61b43b', '-D', '/var/lib/mock/887114-fedora-30-x86_64-1556059092.612511/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ma_iwi10:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-pbdDEMO.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.h2zGXE + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pbdDEMO + /usr/bin/mkdir -p pbdDEMO + cd pbdDEMO + /usr/bin/gzip -dc /builddir/build/SOURCES/pbdDEMO-0.3.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + unzip /builddir/build/SOURCES/tocbibind.zip Archive: /builddir/build/SOURCES/tocbibind.zip creating: tocbibind/ inflating: tocbibind/README inflating: tocbibind/tocbibind.dtx inflating: tocbibind/tocbibind.ins inflating: tocbibind/tocbibind.pdf + cd tocbibind + latex tocbibind.ins This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=latex) restricted \write18 enabled. BUILDSTDERR: kpathsea: Running mktexfmt latex.fmt BUILDSTDERR: mktexfmt: mktexfmt is using the following fmtutil.cnf files (in precedence order): BUILDSTDERR: mktexfmt: /usr/share/texlive/texmf-dist/web2c/fmtutil.cnf BUILDSTDERR: mktexfmt: mktexfmt is using the following fmtutil.cnf file for writing changes: BUILDSTDERR: mktexfmt: /builddir/.texlive2018/texmf-config/web2c/fmtutil.cnf BUILDSTDERR: mktexfmt [INFO]: writing formats under /builddir/.texlive2018/texmf-var/web2c BUILDSTDERR: mktexfmt [INFO]: --- remaking latex with pdftex BUILDSTDERR: mktexfmt: running `pdftex -ini -jobname=latex -progname=latex -translate-file=cp227.tcx *latex.ini' ... BUILDSTDERR: This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (INITEX) BUILDSTDERR: restricted \write18 enabled. BUILDSTDERR: (/usr/share/texlive/texmf-dist/web2c/cp227.tcx) BUILDSTDERR: entering extended mode BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/latex.ini BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/generic/tex-ini-files/pdftexconfig.tex) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/latex.ltx BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/texsys.cfg) BUILDSTDERR: ./texsys.aux found BUILDSTDERR: \@currdir set to: ./. BUILDSTDERR: Assuming \openin and \input BUILDSTDERR: have the same search path. BUILDSTDERR: Defining UNIX/DOS style filename parser. BUILDSTDERR: catcodes, registers, parameters, BUILDSTDERR: LaTeX2e <2018-04-01> patch level 5 BUILDSTDERR: hacks, control, par, spacing, files, font encodings, lengths, BUILDSTDERR: ==================================== BUILDSTDERR: Local config file fonttext.cfg used BUILDSTDERR: ==================================== BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/fonttext.cfg BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/fonttext.ltx BUILDSTDERR: === Don't modify this file, use a .cfg file instead === BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/omlenc.def) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.def) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.def) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmr.fd) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/ot1cmr.fd) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/ot1cmss.fd) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/ot1cmtt.fd))) BUILDSTDERR: ==================================== BUILDSTDERR: Local config file fontmath.cfg used BUILDSTDERR: ==================================== BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/fontmath.cfg BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/fontmath.ltx BUILDSTDERR: === Don't modify this file, use a .cfg file instead === BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmm.fd) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/omscmsy.fd) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/omxcmex.fd) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/ucmr.fd))) BUILDSTDERR: ==================================== BUILDSTDERR: Local config file preload.cfg used BUILDSTDERR: ===================================== BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/preload.cfg BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/preload.ltx)) page nos., x-ref, BUILDSTDERR: environments, center, verbatim, math definitions, boxes, title, sectioning, BUILDSTDERR: contents, floats, footnotes, index, bibliography, output, BUILDSTDERR: =========================================== BUILDSTDERR: Local configuration file hyphen.cfg used BUILDSTDERR: =========================================== BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/generic/babel/hyphen.cfg BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/generic/hyphen/hyphen.tex) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/generic/hyphen/dumyhyph.tex) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/generic/hyphen/zerohyph.tex)) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) BUILDSTDERR: (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)) BUILDSTDERR: ) ) BUILDSTDERR: Beginning to dump on file latex.fmt BUILDSTDERR: (preloaded format=latex 2019.4.23) BUILDSTDERR: 5412 strings of total length 72215 BUILDSTDERR: 50528 memory locations dumped; current usage is 144&50354 BUILDSTDERR: 3741 multiletter control sequences BUILDSTDERR: \font\nullfont=nullfont BUILDSTDERR: \font\OMX/cmex/m/n/10=cmex10 BUILDSTDERR: \font\tenln=line10 BUILDSTDERR: \font\tenlnw=linew10 BUILDSTDERR: \font\tencirc=lcircle10 BUILDSTDERR: \font\tencircw=lcirclew10 BUILDSTDERR: \font\OT1/cmr/m/n/5=cmr5 BUILDSTDERR: \font\OT1/cmr/m/n/7=cmr7 BUILDSTDERR: \font\OT1/cmr/m/n/10=cmr10 BUILDSTDERR: \font\OML/cmm/m/it/5=cmmi5 BUILDSTDERR: \font\OML/cmm/m/it/7=cmmi7 BUILDSTDERR: \font\OML/cmm/m/it/10=cmmi10 BUILDSTDERR: \font\OMS/cmsy/m/n/5=cmsy5 BUILDSTDERR: \font\OMS/cmsy/m/n/7=cmsy7 BUILDSTDERR: \font\OMS/cmsy/m/n/10=cmsy10 BUILDSTDERR: 3633 words of font info for 14 preloaded fonts BUILDSTDERR: 14 hyphenation exceptions BUILDSTDERR: Hyphenation trie of length 6081 has 183 ops out of 35111 BUILDSTDERR: 2 for language 1 BUILDSTDERR: 181 for language 0 BUILDSTDERR: 0 words of pdfTeX memory BUILDSTDERR: 0 indirect objects BUILDSTDERR: No pages of output. BUILDSTDERR: Transcript written on latex.log. BUILDSTDERR: mktexfmt [INFO]: /builddir/.texlive2018/texmf-var/web2c/pdftex/latex.fmt installed. BUILDSTDERR: mktexfmt [INFO]: Successfully rebuilt formats: 1 BUILDSTDERR: mktexfmt [INFO]: Not selected formats: 15 BUILDSTDERR: mktexfmt [INFO]: Total formats: 16 BUILDSTDERR: mktexfmt [INFO]: exiting with status 0 entering extended mode (./tocbibind.ins LaTeX2e <2018-04-01> patch level 5 (/usr/share/texlive/texmf-dist/tex/latex/base/docstrip.tex Utility: `docstrip' 2.5g <2018/05/03> English documentation <2018/05/03> ********************************************************** * This program converts documented macro-files into fast * * loadable files by stripping off (nearly) all comments! * ********************************************************** ******************************************************** * No Configuration file found, using default settings. * ******************************************************** (./tocbibind.ins *** Generating the LaTeX2e package files *** Generating file(s) ./tocbibind.sty Processing file tocbibind.dtx (usc) -> tocbibind.sty File tocbibind.dtx ended by \endinput. Lines processed: 1164 Comments removed: 860 Comments passed: 0 Codelines passed: 300 *********************************************************** * * To finish the installation you have to move the following * file(s) into a directory searched by TeX: * * tocbibind.sty * * * To produce the documentation run the files ending with * `.dtx' through LaTeX. * Process any name.idx file by: * makeindex -s gind.ist name * Process any name.glo file by: * makeindex -s gglo.ist -o name.gls name.glo * * Happy TeXing *********************************************************** ) ) ) No pages of output. Transcript written on tocbibind.log. + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.7Ur4g8 + umask 022 + cd /builddir/build/BUILD + cd pbdDEMO + . /etc/profile.d/modules.sh BUILDSTDERR: ++ '[' -z '' ']' BUILDSTDERR: ++ '[' -z /usr/share/modulefiles ']' BUILDSTDERR: ++ PS_CMD=/usr/bin/ps BUILDSTDERR: ++ '[' '!' -x /usr/bin/ps ']' BUILDSTDERR: ++ EXPR_CMD=/usr/bin/expr BUILDSTDERR: ++ '[' '!' -x /usr/bin/expr ']' BUILDSTDERR: ++ BASENAME_CMD=/usr/bin/basename BUILDSTDERR: ++ '[' '!' -x /usr/bin/basename ']' BUILDSTDERR: +++ /usr/bin/ps -p 53 -ocomm= BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/expr sh : '-*\(.*\)' BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/basename sh BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: ++ '[' -f /usr/share/lmod/lmod/init/sh ']' BUILDSTDERR: ++ . /usr/share/lmod/lmod/init/sh BUILDSTDERR: +++ LMOD_PKG=/usr/share/lmod/lmod BUILDSTDERR: +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ BUILDSTDERR: +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod BUILDSTDERR: +++ MODULESHOME=/usr/share/lmod/lmod BUILDSTDERR: +++ export LMOD_CMD BUILDSTDERR: +++ export LMOD_PKG BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: +++ export MODULESHOME BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 BUILDSTDERR: ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' BUILDSTDERR: ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export LD_LIBRARY_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LOADEDMODULES BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-x86_64 BUILDSTDERR: ++ export LOADEDMODULES BUILDSTDERR: ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MANPATH BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man:: BUILDSTDERR: ++ export MANPATH BUILDSTDERR: ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MODULEPATH BUILDSTDERR: ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core BUILDSTDERR: ++ export MODULEPATH BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin BUILDSTDERR: ++ export MPI_BIN BUILDSTDERR: ++ MPI_COMPILER=openmpi-x86_64 BUILDSTDERR: ++ export MPI_COMPILER BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi BUILDSTDERR: ++ export MPI_HOME BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 BUILDSTDERR: ++ export MPI_INCLUDE BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export MPI_LIB BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-x86_64 BUILDSTDERR: ++ export MPI_MAN BUILDSTDERR: ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON2_SITEARCH BUILDSTDERR: ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON3_SITEARCH BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH BUILDSTDERR: ++ MPI_SUFFIX=_openmpi BUILDSTDERR: ++ export MPI_SUFFIX BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 BUILDSTDERR: ++ export MPI_SYSCONFIG BUILDSTDERR: ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PATH BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin BUILDSTDERR: ++ export PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig BUILDSTDERR: ++ export PKG_CONFIG_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT__LMFILES_ BUILDSTDERR: ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 BUILDSTDERR: ++ export _LMFILES_ BUILDSTDERR: ++ _ModuleTable001_=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 BUILDSTDERR: ++ export _ModuleTable001_ BUILDSTDERR: ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== BUILDSTDERR: ++ export _ModuleTable002_ BUILDSTDERR: ++ _ModuleTable_Sz_=2 BUILDSTDERR: ++ export _ModuleTable_Sz_ BUILDSTDERR: ++ dirname /builddir/build/SOURCES/algpseudocode.sty BUILDSTDERR: ++ pwd + TEXINPUTS=.:/builddir/build/SOURCES:/builddir/build/BUILD/pbdDEMO/tocbibind: + R CMD build pbdDEMO-0.3-2 * checking for file 'pbdDEMO-0.3-2/DESCRIPTION' ... OK * preparing 'pbdDEMO': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * installing the package to build vignettes * creating vignettes ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'pbdDEMO_0.3-2.tar.gz' + tar fx pbdDEMO_0.3-2.tar.gz + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZbKRCO + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64 + cd pbdDEMO + mkdir -p /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64/usr/lib64/R/library + . /etc/profile.d/modules.sh BUILDSTDERR: ++ '[' -z '' ']' BUILDSTDERR: ++ '[' -z /usr/share/modulefiles ']' BUILDSTDERR: ++ PS_CMD=/usr/bin/ps BUILDSTDERR: ++ '[' '!' -x /usr/bin/ps ']' BUILDSTDERR: ++ EXPR_CMD=/usr/bin/expr BUILDSTDERR: ++ '[' '!' -x /usr/bin/expr ']' BUILDSTDERR: ++ BASENAME_CMD=/usr/bin/basename BUILDSTDERR: ++ '[' '!' -x /usr/bin/basename ']' BUILDSTDERR: +++ /usr/bin/ps -p 697 -ocomm= BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/expr sh : '-*\(.*\)' BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/basename sh BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: ++ '[' -f /usr/share/lmod/lmod/init/sh ']' BUILDSTDERR: ++ . /usr/share/lmod/lmod/init/sh BUILDSTDERR: +++ LMOD_PKG=/usr/share/lmod/lmod BUILDSTDERR: +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ BUILDSTDERR: +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod BUILDSTDERR: +++ MODULESHOME=/usr/share/lmod/lmod BUILDSTDERR: +++ export LMOD_CMD BUILDSTDERR: +++ export LMOD_PKG BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: +++ export MODULESHOME BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 BUILDSTDERR: ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' BUILDSTDERR: ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export LD_LIBRARY_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LOADEDMODULES BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-x86_64 BUILDSTDERR: ++ export LOADEDMODULES BUILDSTDERR: ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MANPATH BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man:: BUILDSTDERR: ++ export MANPATH BUILDSTDERR: ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MODULEPATH BUILDSTDERR: ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core BUILDSTDERR: ++ export MODULEPATH BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin BUILDSTDERR: ++ export MPI_BIN BUILDSTDERR: ++ MPI_COMPILER=openmpi-x86_64 BUILDSTDERR: ++ export MPI_COMPILER BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi BUILDSTDERR: ++ export MPI_HOME BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 BUILDSTDERR: ++ export MPI_INCLUDE BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export MPI_LIB BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-x86_64 BUILDSTDERR: ++ export MPI_MAN BUILDSTDERR: ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON2_SITEARCH BUILDSTDERR: ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON3_SITEARCH BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH BUILDSTDERR: ++ MPI_SUFFIX=_openmpi BUILDSTDERR: ++ export MPI_SUFFIX BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 BUILDSTDERR: ++ export MPI_SYSCONFIG BUILDSTDERR: ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PATH BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin BUILDSTDERR: ++ export PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig BUILDSTDERR: ++ export PKG_CONFIG_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT__LMFILES_ BUILDSTDERR: ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 BUILDSTDERR: ++ export _LMFILES_ BUILDSTDERR: ++ _ModuleTable001_=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 BUILDSTDERR: ++ export _ModuleTable001_ BUILDSTDERR: ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== BUILDSTDERR: ++ export _ModuleTable002_ BUILDSTDERR: ++ _ModuleTable_Sz_=2 BUILDSTDERR: ++ export _ModuleTable_Sz_ + OMPI_MCA_orte_allocation_required=0 + OMPI_MCA_orte_rsh_agent=/bin/false + R CMD INSTALL -l /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64/usr/lib64/R/library pbdDEMO BUILDSTDERR: * installing *source* package 'pbdDEMO' ... BUILDSTDERR: ** libs gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbdDEMO_native.c -o pbdDEMO_native.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wc.c -o wc.o gcc -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o pbdDEMO.so pbdDEMO_native.o wc.o -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64/usr/lib64/R/library/pbdDEMO/libs BUILDSTDERR: ** R BUILDSTDERR: ** data BUILDSTDERR: *** moving datasets to lazyload DB BUILDSTDERR: ** demo BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'pbdDEMO' BUILDSTDERR: finding HTML links ... done Temperature-at-Reference-Height html gbd_dmat html load_balance html mpi_example html ncvar html pbdDEMO-package html plot_dmat html read.csv.ddmatrix html timer html verify html BUILDSTDERR: ** building package indices BUILDSTDERR: ** installing vignettes BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (pbdDEMO) + test -d pbdDEMO/src + cd pbdDEMO/src + rm -f pbdDEMO_native.o wc.o pbdDEMO.so + rm -f /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 0.3.2-3.fc30 --unique-debug-suffix -0.3.2-3.fc30.x86_64 --unique-debug-src-base R-pbdDEMO-0.3.2-3.fc30.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pbdDEMO explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64/usr/lib64/R/library/pbdDEMO/libs/pbdDEMO.so extracting debug info from /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64/usr/lib64/R/library/pbdDEMO/libs/pbdDEMO.so /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 3 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.9wsCyV + umask 022 + cd /builddir/build/BUILD + cd pbdDEMO + . /etc/profile.d/modules.sh BUILDSTDERR: ++ '[' -z '' ']' BUILDSTDERR: ++ '[' -z /usr/share/modulefiles ']' BUILDSTDERR: ++ PS_CMD=/usr/bin/ps BUILDSTDERR: ++ '[' '!' -x /usr/bin/ps ']' BUILDSTDERR: ++ EXPR_CMD=/usr/bin/expr BUILDSTDERR: ++ '[' '!' -x /usr/bin/expr ']' BUILDSTDERR: ++ BASENAME_CMD=/usr/bin/basename BUILDSTDERR: ++ '[' '!' -x /usr/bin/basename ']' BUILDSTDERR: +++ /usr/bin/ps -p 936 -ocomm= BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/expr sh : '-*\(.*\)' BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/basename sh BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: ++ '[' -f /usr/share/lmod/lmod/init/sh ']' BUILDSTDERR: ++ . /usr/share/lmod/lmod/init/sh BUILDSTDERR: +++ LMOD_PKG=/usr/share/lmod/lmod BUILDSTDERR: +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ BUILDSTDERR: +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod BUILDSTDERR: +++ MODULESHOME=/usr/share/lmod/lmod BUILDSTDERR: +++ export LMOD_CMD BUILDSTDERR: +++ export LMOD_PKG BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: +++ export MODULESHOME BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 BUILDSTDERR: ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' BUILDSTDERR: ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export LD_LIBRARY_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LOADEDMODULES BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-x86_64 BUILDSTDERR: ++ export LOADEDMODULES BUILDSTDERR: ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MANPATH BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man:: BUILDSTDERR: ++ export MANPATH BUILDSTDERR: ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MODULEPATH BUILDSTDERR: ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core BUILDSTDERR: ++ export MODULEPATH BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin BUILDSTDERR: ++ export MPI_BIN BUILDSTDERR: ++ MPI_COMPILER=openmpi-x86_64 BUILDSTDERR: ++ export MPI_COMPILER BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi BUILDSTDERR: ++ export MPI_HOME BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 BUILDSTDERR: ++ export MPI_INCLUDE BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export MPI_LIB BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-x86_64 BUILDSTDERR: ++ export MPI_MAN BUILDSTDERR: ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON2_SITEARCH BUILDSTDERR: ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON3_SITEARCH BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH BUILDSTDERR: ++ MPI_SUFFIX=_openmpi BUILDSTDERR: ++ export MPI_SUFFIX BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 BUILDSTDERR: ++ export MPI_SYSCONFIG BUILDSTDERR: ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PATH BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin BUILDSTDERR: ++ export PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig BUILDSTDERR: ++ export PKG_CONFIG_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT__LMFILES_ BUILDSTDERR: ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 BUILDSTDERR: ++ export _LMFILES_ BUILDSTDERR: ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvb3Blbm1waS14ODZfNjQiLFsiZnVsbE5hbWUiXT0ibXBpL29wZW5tcGkteDg2XzY0IixbImxvYWRPcmRlciJdPTEscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ibXBpL29wZW5tcGkteDg2XzY0Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFy BUILDSTDERR: ++ export _ModuleTable001_ BUILDSTDERR: ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== BUILDSTDERR: ++ export _ModuleTable002_ BUILDSTDERR: ++ _ModuleTable_Sz_=2 BUILDSTDERR: ++ export _ModuleTable_Sz_ + OMPI_MCA_orte_allocation_required=0 + OMPI_MCA_orte_rsh_agent=/bin/false + /usr/bin/R CMD check pbdDEMO * using log directory '/builddir/build/BUILD/pbdDEMO/pbdDEMO.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'pbdDEMO/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pbdDEMO' version '0.3-2' * checking package namespace information ... OK BUILDSTDERR: * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: BUILDSTDERR: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/bioc/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/annotation/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/data/annotation/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/experiment/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib/PACKAGES' NOTE Packages which this enhances but not available for checking: 'maps' 'RColorBrewer' 'pbdNCDF4' 'pmclust' 'MixSim' 'EMCluster' 'phyclust' 'rjags' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'pbdDEMO' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'pbdDEMO-guide.Rnw' ... OK NONE * checking re-building of vignette outputs ... WARNING Error in re-building vignettes: ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'pbdDEMO-guide.tex' failed. LaTeX errors: ! LaTeX Error: File `algpseudocode.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) ! Emergency stop. l.148 ^^M ! ==> Fatal error occurred, no output PDF file produced! Calls: buildVignettes -> texi2pdf -> texi2dvi Execution halted * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE BUILDSTDERR: See BUILDSTDERR: '/builddir/build/BUILD/pbdDEMO/pbdDEMO.Rcheck/00check.log' BUILDSTDERR: for details. + exit 0 Processing files: R-pbdDEMO-0.3.2-3.fc30.x86_64 Provides: R-pbdDEMO = 0.3.2-3.fc30 R-pbdDEMO(x86-64) = 0.3.2-3.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) rtld(GNU_HASH) Obsoletes: R-pbdDEMO < 0.3.2 Processing files: R-pbdDEMO-debugsource-0.3.2-3.fc30.x86_64 Provides: R-pbdDEMO-debugsource = 0.3.2-3.fc30 R-pbdDEMO-debugsource(x86-64) = 0.3.2-3.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-pbdDEMO-debuginfo-0.3.2-3.fc30.x86_64 Provides: R-pbdDEMO-debuginfo = 0.3.2-3.fc30 R-pbdDEMO-debuginfo(x86-64) = 0.3.2-3.fc30 debuginfo(build-id) = c7de3328f29fcb8ba8c6a3a138211cc7b906c068 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-pbdDEMO-debugsource(x86-64) = 0.3.2-3.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64 Wrote: /builddir/build/RPMS/R-pbdDEMO-0.3.2-3.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/R-pbdDEMO-debugsource-0.3.2-3.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/R-pbdDEMO-debuginfo-0.3.2-3.fc30.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.f9BaYi + umask 022 + cd /builddir/build/BUILD + cd pbdDEMO + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-pbdDEMO-0.3.2-3.fc30.x86_64 + exit 0 Child return code was: 0