%global srcname autoreduce

Name:           python-%{srcname}
Version:        0.9
Release:        1%{?dist}
Summary:        Automated model reduction of nonlinear dynamical systems

License:        BSD-3-Clause
URL:            https://github.com/ayush9pandey/AutoReduce
Source:         %{pypi_source %{srcname}}

BuildArch:      noarch
BuildRequires:  python3-devel
BuildRequires:  pyproject-rpm-macros
# No python3dist() tag in Fedora for the PyPI name python-libsbml (see %%prep).
BuildRequires:  python3-libsbml
# %%check
BuildRequires:  python3-pytest

%global _description %{expand:
autoreduce takes a nonlinear ODE model, written by hand, read from SBML or
exported from BioCRNpyler, and reduces it: quasi-steady-state approximation
over every choice of fast species, time-scale separation, conservation-law
elimination and Hill-function approximations. It reports which reduced models
stay close to the full one.

It is the model-reduction companion of BioCRNpyler and bioscrape in the
Build-A-Cell toolchain.}

%description %_description

%package -n     python3-%{srcname}
Summary:        %{summary}
# Runtime dependency rpm cannot generate: Fedora's python3-libsbml carries no
# python3dist() tag for the PyPI name python-libsbml. It belongs here and not
# in the preamble -- this spec never builds a python-autoreduce package.
Requires:       python3-libsbml

%description -n python3-%{srcname} %_description

%prep
%autosetup -p1 -n %{srcname}-%{version}
# python-libsbml has no dist tag in Fedora; declared by hand above. Upstream
# floors it at 5.21.1; Fedora 43 to 45 carry 5.20.5. autoreduce uses libsbml to
# read an SBML document into species, parameters and reactions, which 5.20 does
# identically: %%check reads the SBML test models against 5.20.5.
grep -q '"python-libsbml>=5.21.1", ' pyproject.toml || { echo "python-libsbml dependency not found" >&2; exit 1; }
sed -i 's/"python-libsbml>=5.21.1", //' pyproject.toml
# requires-python is ">=3.9,<=3.14.7": a ceiling on the patch release upstream
# last tested, which excludes Fedora 44's 3.14.8 and pip refuses to install.
# Nothing in the package is tied to a patch release; %%check is the evidence.
grep -q 'requires-python = ">=3.9,<=3.14.7"' pyproject.toml || { echo "requires-python not found" >&2; exit 1; }
sed -i 's/requires-python = ">=3.9,<=3.14.7"/requires-python = ">=3.9"/' pyproject.toml

%generate_buildrequires
%pyproject_buildrequires

%build
%pyproject_wheel

%install
%pyproject_install
%pyproject_save_files -l %{srcname}

%check
# Upstream's suite: 32 pass, 4 skip. The skips are the optional integrations
# (python-control and PyDMD, which the build root does not install) and the two notebook runs,
# which need nbformat and nbconvert.
%pytest -q tests

%files -n python3-%{srcname} -f %{pyproject_files}
%doc README.md
%license LICENSE

%changelog
* Fri Oct 23 2026 Morgan Hough <morgan.hough@gmail.com> - 0.9-1
- Initial package: autoreduce 0.9 (BSD-3-Clause, read from LICENSE). Net-new
  to Fedora; pure Python.
- Two upstream metadata defects handled in %%prep: requires-python caps at
  <=3.14.7, which excludes Fedora 44's 3.14.8 (pip: "requires a different
  Python: 3.14.8 not in '<=3.14.7,>=3.9'"); and python-libsbml>=5.21.1, which
  has no dist tag in Fedora and is above the 5.20.5 on 43 to 45.
- Offline on f44 with Fedora's libsbml 5.20.5: 32 passed, 4 skipped, 0 failed.