|
roadrunner
2.6.0
Fast simulator for SBML models
|
This is the complete list of members for rr::CModelGenerator, including all inherited members.
| cleanEquation(ASTNode *ast) | rr::CompiledModelGenerator | protectedstatic |
| cleanEquation(const std::string &equation) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedstatic |
| CModelGenerator(const std::string &tempFolder, const std::string &supportCodeFolder, const std::string &compiler) (defined in rr::CModelGenerator) | rr::CModelGenerator | |
| CompiledModelGenerator() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| createModel(const std::string &sbml, uint options) (defined in rr::CModelGenerator) | rr::CModelGenerator | virtual |
| expressionContainsSymbol(ASTNode *ast, const std::string &symbol) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| expressionContainsSymbol(const std::string &expression, const std::string &symbol) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| getCompiler() | rr::CModelGenerator | virtual |
| getHeaderCode() | rr::CModelGenerator | |
| getInfo() | rr::CompiledModelGenerator | protectedvirtual |
| getSourceCode() (defined in rr::CModelGenerator) | rr::CModelGenerator | |
| getSourceCodeFileName() (defined in rr::CModelGenerator) | rr::CModelGenerator | |
| getSpecies(const std::string &id) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| getTemporaryDirectory() | rr::CModelGenerator | virtual |
| initializeL0(int &nrRows, int &nrCols) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| mComputeAndAssignConsevationLaws (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| mFixAmountCompartments (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| mLibStruct | rr::CompiledModelGenerator | protected |
| mNOM | rr::CompiledModelGenerator | protected |
| ms | rr::CompiledModelGenerator | protected |
| mWarnings (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| numAdditionalRates() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| readCompartments() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| readGlobalParameters() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| readLocalParameters(const int &numReactions, std::vector< int > &localParameterDimensions, int &totalLocalParmeters) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| reset() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| setCompiler(const std::string &compiler) | rr::CModelGenerator | virtual |
| setTemporaryDirectory(const std::string &path) (defined in rr::CModelGenerator) | rr::CModelGenerator | virtual |
| substituteTerms(const std::string &reactionName, const std::string &inputEquation, bool bFixAmounts) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| substituteTerms(const int &numReactions, const std::string &reactionName, const std::string &equation) (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| writeComputeAllRatesOfChange(CodeBuilder &sb, const int &numIndependentSpecies, const int &numDependentSpecies, ls::DoubleMatrix &L0)=0 (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedpure virtual |
| writeDouble(const double &value, const std::string &format="%G") (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protected |
| writeUpdateDependentSpecies(CodeBuilder &sb, const int &numIndependentSpecies, const int &numDependentSpecies, ls::DoubleMatrix &L0)=0 (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedpure virtual |
| ~CModelGenerator() (defined in rr::CModelGenerator) | rr::CModelGenerator | virtual |
| ~CompiledModelGenerator() (defined in rr::CompiledModelGenerator) | rr::CompiledModelGenerator | protectedvirtual |
1.9.1