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roadrunner
2.6.0
Fast simulator for SBML models
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This is the complete list of members for rr::CompiledExecutableModel, including all inherited members.
| applyEventAssignment(int eventId, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| applyEvents(double timeEnd, const unsigned char *previousEventStatus, const double *initialState, double *finalState) | rr::CompiledExecutableModel | virtual |
| applyPendingEvents(double timeEnd) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| cAssignRates_a (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cAssignRates_b (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| ccomputeAllRatesOfChange (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| ccomputeConservedTotals (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| ccomputeEventPriorities (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cComputeReactionRates (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| ccomputeRules (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cconvertToAmounts (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cconvertToConcentrations (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cevalEvents (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cevalInitialAssignments (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cevalModel (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cgetConcentration (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cGetCurrentValues (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cgetModelName (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cgetNumLocalParameters (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cinitializeInitialConditions (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cInitializeRateRuleSymbols (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cInitializeRates (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cInitModel (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cInitModelData (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| CompiledExecutableModel(const ModelSymbols &symbols, ModelSharedLibrary *dll) | rr::CompiledExecutableModel | |
| CompiledModelState (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | friend |
| computeAllRatesOfChange() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| computeConservedTotals() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| computeEventPriorites() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| computeRules() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| convertToAmounts() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| convertToConcentrations() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| cresetEvents (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| csetBoundaryConditions (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| csetCompartmentVolumes (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| csetConcentration (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| csetInitialConditions (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| csetParameterValues (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| ctestConstraints (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| cupdateDependentSpeciesValues (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| evalEventAssignment(int eventId) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| evalEvents(const double time, const double *y) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| evalInitialAssignments() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| evalInitialConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| evalReactionRates() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| eventAssignment(int eventId) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| ExecutableModel() | rr::ExecutableModel | |
| ExecutableModelFlags enum name | rr::ExecutableModel | |
| getAmount(const int i) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| getAssignmentRuleIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getBoundarySpeciesAmounts(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getBoundarySpeciesAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getBoundarySpeciesCompartmentIndex(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getBoundarySpeciesConcentrations(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getBoundarySpeciesConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getBoundarySpeciesId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getBoundarySpeciesId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getBoundarySpeciesIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getBoundarySpeciesInitAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getBoundarySpeciesInitConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getCompartmentId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getCompartmentId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getCompartmentIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getCompartmentIndexForBoundarySpecies(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getCompartmentIndexForFloatingSpecies(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getCompartmentInitVolumes(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getCompartmentInitVolumes(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getCompartmentVolumes(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getCompartmentVolumes(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getConservedMoietyId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getConservedMoietyId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getConservedMoietyIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getConservedMoietyValues(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getConservedMoietyValues(size_t len, int const *indx, double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getConservedSumChanged() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getEventDelays(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getEventId(int) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getEventId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getEventIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getEventIndex(const std::string &) | rr::CompiledExecutableModel | virtual |
| getEventListener(int) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getEventListener(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getEventPriorities(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getEventRoots(double time, const double *y, double *gdot) | rr::CompiledExecutableModel | virtual |
| getEventTriggers(int len, const int *indx, unsigned char *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getEventTriggers(size_t len, const int *indx, unsigned char *values)=0 | rr::ExecutableModel | pure virtual |
| getExecutableModelDesc() const | rr::CompiledExecutableModel | inlinevirtual |
| getFlags() const | rr::CompiledExecutableModel | inlinevirtual |
| getFloatingSpeciesAmountRate(int index, const double *reactionRates) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesAmountRate(size_t index, const double *reactionRates)=0 | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesAmountRates(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesAmountRates(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesAmounts(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesConcentration(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| getFloatingSpeciesConcentrationRates(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesConcentrationRates(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesConcentrations(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getFloatingSpeciesId(size_t index)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesIndex(const std::string &name) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getFloatingSpeciesInitAmounts(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesInitAmounts(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getFloatingSpeciesInitConcentrations(int len, int const *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getFloatingSpeciesInitConcentrations(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getGlobalParameterId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getGlobalParameterId(size_t index)=0 | rr::ExecutableModel | pure virtual |
| getGlobalParameterIndex(const std::string &name) | rr::CompiledExecutableModel | virtual |
| getGlobalParameterInitValues(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getGlobalParameterValues(int len, int const *indx, double *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getGlobalParameterValues(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getIds(int types, std::list< std::string > &ids) | rr::CompiledExecutableModel | virtual |
| getInfo() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getInitialAssignmentIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getModelName() | rr::CompiledExecutableModel | virtual |
| getNextPendingEventTime(bool pop) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getNumBoundarySpecies() | rr::CompiledExecutableModel | virtual |
| getNumCompartments() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getNumConservedMoieties() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getNumDepFloatingSpecies() | rr::CompiledExecutableModel | virtual |
| getNumEvents() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getNumFloatingSpecies() | rr::CompiledExecutableModel | virtual |
| getNumGlobalParameters() | rr::CompiledExecutableModel | virtual |
| getNumIndFloatingSpecies() | rr::CompiledExecutableModel | virtual |
| getNumLocalParameters(int reactionId) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getNumPiecewiseTriggers()=0 | rr::ExecutableModel | pure virtual |
| getNumRateRules() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getNumReactions() | rr::CompiledExecutableModel | virtual |
| getPendingEventSize() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getPiecewiseTriggerRoots(double time, const double *y, double *gdot)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getRandom() | rr::CompiledExecutableModel | virtual |
| getRandomSeed() | rr::CompiledExecutableModel | virtual |
| getRateRuleIds(std::list< std::string > &)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| getRateRuleRates(size_t len, int const *indx, double *values) | rr::ExecutableModel | virtual |
| getRateRuleSymbols() const =0 | rr::ExecutableModel | pure virtual |
| getRateRuleValues(double *rateRuleValues) | rr::CompiledExecutableModel | virtual |
| getReactionId(int index) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getReactionId(size_t index)=0 | rr::ExecutableModel | pure virtual |
| getReactionIndex(const std::string &reactionName) | rr::CompiledExecutableModel | virtual |
| getReactionRates(int len, const int *indx, double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getReactionRates(size_t len, int const *indx, double *values)=0 | rr::ExecutableModel | pure virtual |
| getStateVector(double *stateVector) | rr::CompiledExecutableModel | virtual |
| getStateVectorId(int index) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getStateVectorId(size_t index)=0 | rr::ExecutableModel | pure virtual |
| getStateVectorRate(double time, const double *y, double *dydt=0) | rr::CompiledExecutableModel | virtual |
| getStoichiometry(int speciesIndex, int reactionIndex) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::getStoichiometry(int index)=0 | rr::ExecutableModel | pure virtual |
| getStoichiometryId(size_t index)=0 | rr::ExecutableModel | pure virtual |
| getStoichiometryIndex(const std::string &)=0 | rr::ExecutableModel | pure virtual |
| getStoichiometryIndex(const std::string &, const std::string &)=0 | rr::ExecutableModel | pure virtual |
| getStoichiometryMatrix(int *rows, int *cols, double **data) | rr::CompiledExecutableModel | virtual |
| getSupportedIdTypes() | rr::CompiledExecutableModel | virtual |
| getTime() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| getValue(const std::string &id) | rr::CompiledExecutableModel | virtual |
| initializeInitialConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| initializeRateRuleSymbols() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| initializeRates() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| INTEGRATION enum value | rr::ExecutableModel | |
| mAssignments (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mAssignmentTimes (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mConservedSumChanged (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mData | rr::CompiledExecutableModel | |
| mDLL (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mDummyDouble (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mDummyDoubleArray (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mDummyInt (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| mIntegrationStartTime (defined in rr::ExecutableModel) | rr::ExecutableModel | protected |
| mIsInitialized | rr::CompiledExecutableModel | |
| modelStates (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| ms (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| OPTIMIZE_REACTION_RATE_SELECTION enum value | rr::ExecutableModel | |
| PopDiscard enum value | rr::CompiledExecutableModel | |
| popState(unsigned options=0) | rr::CompiledExecutableModel | virtual |
| print(std::ostream &stream) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| pushState(unsigned options=0) | rr::CompiledExecutableModel | virtual |
| removePendingAssignmentForIndex(int eventIndex) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| reset() | rr::CompiledExecutableModel | virtual |
| reset(int options) | rr::CompiledExecutableModel | virtual |
| resetEvents() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| retestEvents(const double &timeEnd, const std::vector< int > &handledEvents, std::vector< int > &removeEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| retestEvents(const double &timeEnd, std::vector< int > &handledEvents, const bool &assignOldState) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| retestEvents(const double &timeEnd, const std::vector< int > &handledEvents, const bool &assignOldState, std::vector< int > &removeEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| saveState(std::ostream &out) (defined in rr::ExecutableModel) | rr::ExecutableModel | inlinevirtual |
| setBoundaryConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setBoundarySpeciesAmounts(size_t len, int const *indx, double const *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setBoundarySpeciesAmounts(size_t len, int const *indx, double const *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setBoundarySpeciesConcentrations(int len, int const *indx, double const *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::setBoundarySpeciesConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setBoundarySpeciesInitAmounts(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setBoundarySpeciesInitConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setCompartmentInitVolumes(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::setCompartmentInitVolumes(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setCompartmentVolumes() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setCompartmentVolumes(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setCompartmentVolumes(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setCompartmentVolumes(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setConcentration(int index, double value) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| setConservedMoietyValues(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setConservedMoietyValues(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setConservedSumChanged(bool) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setEventListener(int, rr::EventListenerPtr) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setEventListener(size_t index, EventListenerPtr eventHandler)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setFlags(uint32_t) | rr::CompiledExecutableModel | inlinevirtual |
| setFloatingSpeciesAmounts(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setFloatingSpeciesAmounts(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setFloatingSpeciesAmounts(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setFloatingSpeciesConcentrations(int len, int const *indx, double const *values) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::setFloatingSpeciesConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setFloatingSpeciesInitAmounts(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::setFloatingSpeciesInitAmounts(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setFloatingSpeciesInitConcentrations(int len, int const *indx, double const *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| rr::ExecutableModel::setFloatingSpeciesInitConcentrations(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setGlobalParameterInitValues(size_t len, int const *indx, double const *values)=0 | rr::ExecutableModel | pure virtual |
| setGlobalParameterValues(int len, int const *indx, const double *values) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setGlobalParameterValues(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setGlobalParameterValues(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setInitialConditions() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setIntegration(bool value) | rr::ExecutableModel | inlineprotected |
| setIntegrationStartTime(double time) (defined in rr::ExecutableModel) | rr::ExecutableModel | virtual |
| setParameterValues() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setRandomSeed(int64_t) | rr::CompiledExecutableModel | virtual |
| setRateRuleValues(const double *rateRuleValues) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setStateVector(const double *stateVector) | rr::CompiledExecutableModel | virtual |
| setStoichiometries(size_t len, int const *indx, const double *values)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setStoichiometries(size_t len, int const *indx, const double *values, bool strict)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setStoichiometry(int index, double value)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setStoichiometry(int speciesIndex, int reactionIndex, double value)=0 (defined in rr::ExecutableModel) | rr::ExecutableModel | pure virtual |
| setTime(double _time) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| setupDLLFunctions() | rr::CompiledExecutableModel | virtual |
| setupModelData() | rr::CompiledExecutableModel | |
| setValue(const std::string &id, double value) | rr::CompiledExecutableModel | virtual |
| sortEventsByPriority(std::vector< Event > &firedEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| sortEventsByPriority(std::vector< int > &firedEvents) (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| StateStackOptions enum name | rr::CompiledExecutableModel | |
| stoichiometryMatrix (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | |
| testConstraints() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| updateDependentSpeciesValues() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| ~CompiledExecutableModel() (defined in rr::CompiledExecutableModel) | rr::CompiledExecutableModel | virtual |
| ~ExecutableModel() | rr::ExecutableModel | inlinevirtual |
1.9.1