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roadrunner
2.6.0
Fast simulator for SBML models
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This is the complete list of members for rr::NOMSupport, including all inherited members.
| addEmptySetNode(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
| addEmptySetNodes(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
| addMissingModifiers(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
| addSourceSinkNodes(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
| changeConstantForRules(Model *model) (defined in rr::NOMSupport) | rr::NOMSupport | |
| checkConsistency() (defined in rr::NOMSupport) | rr::NOMSupport | |
| convertLevel1ToLevel2Impl(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
| convertLevel2ToLevel1Impl(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
| convertMathMLToString(const std::string &sMathML) (defined in rr::NOMSupport) | rr::NOMSupport | static |
| convertPowImpl(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
| convertSBML(const std::string &sModel, const int &nLevel, const int &nVersion) (defined in rr::NOMSupport) | rr::NOMSupport | |
| convertSBML(const std::string &sModel, const int &nLevel, const int &nVersion, bool throwError) (defined in rr::NOMSupport) | rr::NOMSupport | |
| convertStringToMathML(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | static |
| convertTime(const std::string &sArg, const std::string &sTimeSymbol) | rr::NOMSupport | static |
| convertTimeToCSymbol(const std::string &sArg, const std::string &sTimeSymbol) (defined in rr::NOMSupport) | rr::NOMSupport | |
| exists(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| fetAnnotatedModel(const std::string &targetSBML, const std::string &sourceSBML, bool checkModelId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| fillStack(stack< std::string > &stack, SBMLSymbol &symbol) (defined in rr::NOMSupport) | rr::NOMSupport | static |
| fixCommonIssues(const std::string &sbml) (defined in rr::NOMSupport) | rr::NOMSupport | |
| fixCommonIssues(const std::string &sbml, const std::string &programName, const std::string &programVersion) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getAnnotation(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getBuiltinFunctionInfo(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getBuiltinFunctions() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getCompartmentIdBySpeciesId(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getDerivedUnitDefinition(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getElement(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getId(SBase &element) (defined in rr::NOMSupport) | rr::NOMSupport | static |
| getKineticLaw(const int &index) | rr::NOMSupport | |
| getlibSBMLVersion() (defined in rr::NOMSupport) | rr::NOMSupport | static |
| getListOfBoundarySpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getListOfBoundarySpeciesIds() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getListOfErrors() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getListOfFloatingSpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getListOfFloatingSpeciesIds() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getListOfParameters() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getMatchForSymbol(const std::string &sbmlId) | rr::NOMSupport | |
| getMetaId(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getModel() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getModelId() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getModelName() const (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNotes(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthBoundarySpeciesCompartmentName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthBoundarySpeciesId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthBoundarySpeciesName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthCompartmentId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthCompartmentName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthConstraint(const int &nIndex, std::string &sMessage) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthError(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthEvent(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthFloatingSpeciesCompartmentName(int index) | rr::NOMSupport | |
| getNthFloatingSpeciesId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthFloatingSpeciesName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthFunctionDefinition(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthGlobalParameterId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthGlobalParameterName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthInitialAssignment(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthInitialAssignmentPair(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthListOfModifiers(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthListOfProducts(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthListOfReactants(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthParameterHasValue(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthParameterId(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthParameterName(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthParameterValue(const int &nReactionIndex, const int &nParameterIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthProductName(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthProductStoichiometry(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthProductStoichiometryDouble(const int &nIndex, const int &nProduct) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthReactantName(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthReactantStoichiometry(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthReactantStoichiometryDouble(const int &nIndex, const int &nReactant) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthReactionId(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthReactionName(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthRule(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthRuleType(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNthUseValuesFromTriggerTime(const int &arg) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumBoundarySpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumCompartments() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumConstraints() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumErrors() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumEvents() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumFloatingSpecies() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumFunctionDefinitions() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumGlobalParameters() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumInitialAssignments() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumParameters(int reaction) | rr::NOMSupport | |
| getNumProducts(const int &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumReactants(const int &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getNumReactions() | rr::NOMSupport | |
| getNumRules() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getOutsideCompartment(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getParamPromotedSBML(const std::string &sArg) (defined in rr::NOMSupport) | rr::NOMSupport | static |
| getSBML() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getSBMLDocument() (defined in rr::NOMSupport) | rr::NOMSupport | |
| getSBOCapableSBML(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getSBOTerm(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| getSymbols(const ASTNode *math) | rr::NOMSupport | static |
| getValue(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| hasInitialAmount(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| hasInitialConcentration(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| hasSBOTerm(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| hasValue(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| isBoundary(const std::string &sId) | rr::NOMSupport | |
| isCompartment(const std::string &sId) | rr::NOMSupport | |
| isConstantImpl(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| isFloating(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| isReactionReversible(const int &nIndex) (defined in rr::NOMSupport) | rr::NOMSupport | |
| isSpecies(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| loadFromFile(const std::string &fileName) (defined in rr::NOMSupport) | rr::NOMSupport | |
| loadParameterPromotedSBML(const std::string &var0, const std::string &sTimeSymbol) (defined in rr::NOMSupport) | rr::NOMSupport | |
| loadSBML(const std::string &var0) (defined in rr::NOMSupport) | rr::NOMSupport | |
| loadSBML(const std::string &var0, const std::string &sTimeSymbol) (defined in rr::NOMSupport) | rr::NOMSupport | |
| multiplyCompartment(const std::string &sbmlId, std::string &compartmentId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| needEmptySetNode(Model model) (defined in rr::NOMSupport) | rr::NOMSupport | |
| needSinkNode(Model model) (defined in rr::NOMSupport) | rr::NOMSupport | |
| needSourceNode(Model model) (defined in rr::NOMSupport) | rr::NOMSupport | |
| NOMSupport() (defined in rr::NOMSupport) | rr::NOMSupport | |
| removeJD1Layout(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
| removeJD2Layout(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
| removeLayoutInformation(const std::string &sSBML) (defined in rr::NOMSupport) | rr::NOMSupport | |
| reorderAssignmentRules(deque< Rule * > &assignmentRules) | rr::NOMSupport | static |
| reorderRules(SBMLDocument &oc, Model &model) | rr::NOMSupport | static |
| replaceSymbol(ASTNode *node, const std::string &oldId, const std::string &newId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| setAnnotation(const std::string &sId, const std::string &sAnnotation) (defined in rr::NOMSupport) | rr::NOMSupport | |
| setModelId(const std::string &sId) (defined in rr::NOMSupport) | rr::NOMSupport | |
| setNotes(const std::string &sId, const std::string &sNotes) (defined in rr::NOMSupport) | rr::NOMSupport | |
| setSBOTerm(const std::string &sId, const int &nSBOTerm) (defined in rr::NOMSupport) | rr::NOMSupport | |
| setValue(const std::string &sId, const double &dValue) (defined in rr::NOMSupport) | rr::NOMSupport | |
| setValue(Model *model, const std::string &id, const double &value, const bool &throwIfNotFound) (defined in rr::NOMSupport) | rr::NOMSupport | |
| testASTTime() (defined in rr::NOMSupport) | rr::NOMSupport | |
| validateSBML(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
| validateWithConsistency(const std::string &sModel) (defined in rr::NOMSupport) | rr::NOMSupport | |
| ~NOMSupport() (defined in rr::NOMSupport) | rr::NOMSupport |
1.9.1