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roadrunner
2.6.0
Fast simulator for SBML models
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wrapper class to change the solve() method of SteadyStateSolver types. More...
#include <PresimulationDecorator.h>
Public Member Functions | |
| PresimulationDecorator (SteadyStateSolver *solver) | |
| construct a PresimulationDecorator from a solver. More... | |
| double | solve () override |
| Solver * | construct (ExecutableModel *executableModel) const override |
| Constructs a new Solver of a given type. More... | |
| SteadyStateSolverDecorator ()=default | |
| SteadyStateSolverDecorator (SteadyStateSolver *solver) | |
Public Member Functions inherited from rr::SteadyStateSolverDecorator | |
| SteadyStateSolverDecorator (SteadyStateSolver *solver) | |
| void | syncWithModel (ExecutableModel *m) override |
| Base decorator delegates all work to the wrapped steady state solver. More... | |
| double | solve () override |
| std::string | getName () const override |
| Gets the name associated with this Solver type. More... | |
| std::string | getDescription () const override |
| Gets the description associated with this Solver type. More... | |
| std::string | getHint () const override |
| Gets the hint associated with this Solver type. More... | |
| void | resetSettings () override |
| Implements settings shared by all steady state solvers. | |
Public Member Functions inherited from rr::SteadyStateSolver | |
| virtual void | loadConfigSettings () |
| std::string | toString () const override |
| Return a std::string representation of the solver. More... | |
| std::string | toRepr () const override |
| Return std::string representation a la Python repr method. More... | |
| Solver ()=default | |
| Solver (ExecutableModel *model) | |
Public Member Functions inherited from rr::Solver | |
| Solver (ExecutableModel *model) | |
| void | updateSettings (Dictionary *inputSettings) |
| Update settings values. More... | |
| std::vector< std::string > | getSettings () const |
| Get a list of all settings for this solver. More... | |
| std::unordered_map< std::string, Setting > & | getSettingsMap () |
| get settings for this solver More... | |
| virtual Setting | getValue (const std::string &key) const |
| Get the value of an integrator setting. More... | |
| virtual Setting | hasValue (const std::string &key) const |
| Return true if this setting is supported by the integrator. More... | |
| virtual size_t | getNumParams () const |
| Get the number of parameters. More... | |
| virtual std::string | getParamName (size_t n) const |
| Get the name of the parameter at index n. More... | |
| virtual std::string | getParamDisplayName (int n) const |
| Get the display name of the parameter at index n. More... | |
| virtual std::string | getParamHint (int n) const |
| Get the hint of the parameter at index n. More... | |
| virtual std::string | getParamDesc (int n) const |
| Get the description of the parameter at index n. More... | |
| virtual std::string | getValueAsString (const std::string &key) |
| Wrapper for getValue which converts output to a specific type. More... | |
| virtual void | setValue (const std::string &key, Setting value) |
| virtual std::string | getSettingsRepr () const |
| Get the solver settings as a std::string. More... | |
| virtual std::string | settingsPyDictRepr () const |
| Python dictionary-style std::string representation of settings. More... | |
| const std::string & | getDisplayName (const std::string &key) const |
| Gets the hint associated with a given key. More... | |
| const std::string & | getHint (const std::string &key) const |
| Gets the hint associated with a given key. More... | |
| const std::string & | getDescription (const std::string &key) const |
| Gets the description associated with a given key. More... | |
| Setting::TypeId | getType (const std::string &key) const |
| Gets the type associated with a given key. More... | |
| virtual ExecutableModel * | getModel () const |
| returns the pointer to the ExecutableModel | |
| virtual std::string | getName () const=0 |
| Gets the name associated with this Solver type. More... | |
| virtual std::string | getHint () const=0 |
| Gets the hint associated with this Solver type. More... | |
| virtual std::string | getDescription () const=0 |
| Gets the description associated with this Solver type. More... | |
Additional Inherited Members | |
Public Types inherited from rr::Solver | |
| using | SettingsList = std::vector< std::string > |
| using | SettingsMap = std::unordered_map< std::string, Setting > |
| using | DisplayNameMap = std::unordered_map< std::string, std::string > |
| using | HintMap = std::unordered_map< std::string, std::string > |
| using | DescriptionMap = std::unordered_map< std::string, std::string > |
Public Attributes inherited from rr::Solver | |
| SettingsList | sorted_settings |
| SettingsMap | settings |
| DisplayNameMap | display_names_ |
| HintMap | hints |
| DescriptionMap | descriptions |
Protected Member Functions inherited from rr::Solver | |
| void | addSetting (const std::string &name, const Setting &val, const std::string &display_name, const std::string &hint, const std::string &description) |
Protected Attributes inherited from rr::SteadyStateSolverDecorator | |
| SteadyStateSolver * | solver_ |
Protected Attributes inherited from rr::Solver | |
| ExecutableModel * | mModel = nullptr |
| non-owning pointer to model | |
wrapper class to change the solve() method of SteadyStateSolver types.
Pass a solver to the PresimulationDecorator. The resulting object can be used as a SteadyStateSolver; the solve() method of which will apply presimulation to a steadyState calculation.
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explicit |
construct a PresimulationDecorator from a solver.
Use the presimulation_time solver option to set the time point to integrate to before computing steady state.
| solver | pointer to instantiated SteadyStateSolver type. |
options already present in the solver or the model associated with the solver are respected.
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overridevirtual |
Constructs a new Solver of a given type.
the caller is responsible for deleting memory associated with the returned Solver*.
Implements rr::Registrable.