Warning: Permanently added '54.243.6.91' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10271887-fedora-43-x86_64 --chroot fedora-43-x86_64 Version: 1.6 PID: 21455 Logging PID: 21457 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10271887, 'buildroot_pkgs': [], 'chroot': 'fedora-43-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '1a637140228ba72b6c97088cde51268973d0bfcf', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'freesurfer', 'package_version': '8.2.0-2', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-43-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '10271887-fedora-43-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer', '/var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer'... Running: git checkout 1a637140228ba72b6c97088cde51268973d0bfcf -- cmd: ['git', 'checkout', '1a637140228ba72b6c97088cde51268973d0bfcf', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer rc: 0 stdout: stderr: Note: switching to '1a637140228ba72b6c97088cde51268973d0bfcf'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1a63714 automatic import of freesurfer Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading freesurfer-8.2.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o freesurfer-8.2.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/freesurfer/freesurfer-8.2.0.tar.gz/md5/46be514b2e435f456fded3fde94e2aaa/freesurfer-8.2.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 389M 100 389M 0 0 395M 0 --:--:-- --:--:-- --:--:-- 395M INFO: Reading stdout from command: md5sum freesurfer-8.2.0.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer/freesurfer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1774820887.469191 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.2, NVR = mock-6.7-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer/freesurfer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1774820887.469191 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer/freesurfer.spec) Config(fedora-43-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-bootstrap-1774820887.469191/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:43 INFO: Pulling image: registry.fedoraproject.org/fedora:43 INFO: Tagging container image as mock-bootstrap-eb20f118-5a85-48eb-b3f9-92ca77349741 INFO: Checking that 2725cbeac00dedf4e55943f5147f9a9629cdab87ed943633d4e2f998615f689f image matches host's architecture INFO: Copy content of container 2725cbeac00dedf4e55943f5147f9a9629cdab87ed943633d4e2f998615f689f to /var/lib/mock/fedora-43-x86_64-bootstrap-1774820887.469191/root INFO: mounting 2725cbeac00dedf4e55943f5147f9a9629cdab87ed943633d4e2f998615f689f with podman image mount INFO: image 2725cbeac00dedf4e55943f5147f9a9629cdab87ed943633d4e2f998615f689f as /var/lib/containers/storage/overlay/007726a12ccfb20a1add749940f71a43dd7d24766b2b4f0f75d08fb8563798eb/merged INFO: umounting image 2725cbeac00dedf4e55943f5147f9a9629cdab87ed943633d4e2f998615f689f (/var/lib/containers/storage/overlay/007726a12ccfb20a1add749940f71a43dd7d24766b2b4f0f75d08fb8563798eb/merged) with podman image umount INFO: Removing image mock-bootstrap-eb20f118-5a85-48eb-b3f9-92ca77349741 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-1774820887.469191/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.x86_64 rpm-sequoia-1.10.1-1.fc43.x86_64 dnf5-5.2.18.0-2.fc43.x86_64 dnf5-plugins-5.2.18.0-2.fc43.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 34.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 91.3 KiB/s | 27.4 KiB | 00m00s updates 100% | 122.9 KiB/s | 24.6 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.7-8.fc43 updates 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 43-26 updates 20.5 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42-10.fc43 updates 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.13-4.fc43 fedora 388.8 KiB info x86_64 7.2-7.fc43 updates 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-11.fc43 fedora 182.9 KiB rpm-build x86_64 6.0.1-1.fc43 updates 287.5 KiB sed x86_64 4.9-5.fc43 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-67.fc43 fedora 386.3 KiB util-linux x86_64 2.41.3-7.fc43 updates 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-4.fc43 updates 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-3.fc43 updates 2.3 MiB alternatives x86_64 1.33-3.fc43 updates 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.4-1.fc43 updates 378.8 KiB binutils x86_64 2.45.1-4.fc43 updates 27.3 MiB build-reproducibility-srpm-macros noarch 0.6.0-3.fc43 updates 735.0 B bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-1.2.fc43 updates 2.7 MiB coreutils-common x86_64 9.7-8.fc43 updates 11.3 MiB crypto-policies noarch 20251125-1.git63291f8.fc43 updates 147.1 KiB curl x86_64 8.15.0-5.fc43 updates 461.5 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc43 fedora 2.3 MiB debugedit x86_64 5.2-3.fc43 fedora 214.0 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc43 fedora 148.1 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils x86_64 0.194-1.fc43 updates 2.9 MiB elfutils-debuginfod-client x86_64 0.194-1.fc43 updates 84.0 KiB elfutils-default-yama-scope noarch 0.194-1.fc43 updates 1.8 KiB elfutils-libelf x86_64 0.194-1.fc43 updates 1.1 MiB elfutils-libs x86_64 0.194-1.fc43 updates 687.5 KiB fedora-gpg-keys noarch 43-1 fedora 131.2 KiB fedora-release noarch 43-26 updates 0.0 B fedora-release-identity-basic noarch 43-26 updates 631.0 B fedora-repos noarch 43-1 fedora 4.9 KiB file x86_64 5.46-8.fc43 fedora 100.2 KiB file-libs x86_64 5.46-8.fc43 fedora 11.9 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 2-1.fc43 fedora 2.1 KiB gdb-minimal x86_64 17.1-4.fc43 updates 13.6 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42-10.fc43 updates 6.7 MiB glibc-common x86_64 2.42-10.fc43 updates 1.0 MiB glibc-gconv-extra x86_64 2.42-10.fc43 updates 7.2 MiB gmp x86_64 1:6.3.0-4.fc43 fedora 811.2 KiB gnat-srpm-macros noarch 7-1.fc43 updates 1.0 KiB gnulib-l10n noarch 20241231-1.fc43 fedora 655.0 KiB gnupg2 x86_64 2.4.9-5.fc43 updates 6.6 MiB gnupg2-dirmngr x86_64 2.4.9-5.fc43 updates 618.4 KiB gnupg2-gpg-agent x86_64 2.4.9-5.fc43 updates 671.4 KiB gnupg2-gpgconf x86_64 2.4.9-5.fc43 updates 250.0 KiB gnupg2-keyboxd x86_64 2.4.9-5.fc43 updates 201.4 KiB gnupg2-verify x86_64 2.4.9-5.fc43 updates 348.5 KiB gnutls x86_64 3.8.12-1.fc43 updates 3.7 MiB go-srpm-macros noarch 3.8.0-1.fc43 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-6.fc43 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.22.2-2.fc43 updates 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.4-1.fc43 updates 955.3 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.3-7.fc43 updates 262.4 KiB libbrotli x86_64 1.2.0-1.fc43 updates 865.4 KiB libcap x86_64 2.76-3.fc43 fedora 209.1 KiB libcap-ng x86_64 0.9.2-1.fc43 updates 65.0 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.15.0-5.fc43 updates 903.2 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.3-7.fc43 updates 380.4 KiB libffi x86_64 3.5.2-1.fc43 updates 83.8 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-7.fc43 updates 266.6 KiB libgcrypt x86_64 1.11.1-3.fc43 updates 1.6 MiB libgomp x86_64 15.2.1-7.fc43 updates 541.5 KiB libgpg-error x86_64 1.55-2.fc43 fedora 915.3 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.3-7.fc43 updates 33.9 KiB libmount x86_64 2.41.3-7.fc43 updates 372.7 KiB libnghttp2 x86_64 1.66.0-2.fc43 fedora 162.2 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-5.fc43 fedora 193.1 KiB libsemanage x86_64 3.9-4.fc43 fedora 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.3-7.fc43 updates 180.5 KiB libssh x86_64 0.11.4-1.fc43 updates 571.8 KiB libssh-config noarch 0.11.4-1.fc43 updates 277.0 B libstdc++ x86_64 15.2.1-7.fc43 updates 2.8 MiB libtasn1 x86_64 4.21.0-1.fc43 updates 176.7 KiB libtool-ltdl x86_64 2.5.4-8.fc43 updates 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.29-4.fc43 fedora 171.3 KiB libuuid x86_64 2.41.3-7.fc43 updates 37.4 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.5.2-1.fc43 updates 285.3 KiB libxml2 x86_64 2.12.10-5.fc43 fedora 1.7 MiB libzstd x86_64 1.5.7-2.fc43 fedora 799.9 KiB lua-libs x86_64 5.4.8-4.fc43 updates 281.9 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.13-1.fc43 updates 658.1 KiB openssl-libs x86_64 1:3.5.4-2.fc43 updates 8.9 MiB p11-kit x86_64 0.26.2-1.fc43 updates 2.5 MiB p11-kit-trust x86_64 0.26.2-1.fc43 updates 466.5 KiB package-notes-srpm-macros noarch 0.5-15.fc43 updates 1.6 KiB pam-libs x86_64 1.7.1-4.fc43 updates 126.8 KiB pcre2 x86_64 10.47-1.fc43 updates 702.6 KiB pcre2-syntax noarch 10.47-1.fc43 updates 281.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20260116-1.fc43 updates 70.4 KiB pyproject-srpm-macros noarch 1.18.7-1.fc43 updates 1.9 KiB python-srpm-macros noarch 3.14-5.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.18-1.fc43 updates 500.0 B qt6-srpm-macros noarch 6.10.2-1.fc43 updates 472.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 6.0.1-1.fc43 updates 3.1 MiB rpm-build-libs x86_64 6.0.1-1.fc43 updates 264.4 KiB rpm-libs x86_64 6.0.1-1.fc43 updates 933.7 KiB rpm-sequoia x86_64 1.10.1-1.fc43 updates 2.4 MiB rpm-sign-libs x86_64 6.0.1-1.fc43 updates 39.7 KiB rust-srpm-macros noarch 28.4-1.fc43 updates 5.5 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs x86_64 258.7-1.fc43 updates 2.3 MiB systemd-standalone-sysusers x86_64 258.7-1.fc43 updates 293.6 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.3-7.fc43 updates 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-4.fc43 updates 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.3.3-2.fc43 updates 161.7 KiB zstd x86_64 1.5.7-2.fc43 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 170 packages Total size of inbound packages is 59 MiB. Need to download 0 B. After this operation, 200 MiB extra will be used (install 200 MiB, remove 0 B). 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libssh-config-0:0.11.4-1.fc43 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [170/170] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/172] Verify package files 100% | 729.0 B/s | 170.0 B | 00m00s [ 2/172] Prepare transaction 100% | 3.7 KiB/s | 170.0 B | 00m00s [ 3/172] Installing libgcc-0:15.2.1-7. 100% | 131.0 MiB/s | 268.3 KiB | 00m00s [ 4/172] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/172] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 6/172] Installing fedora-release-ide 100% | 0.0 B/s | 888.0 B | 00m00s [ 7/172] Installing fedora-gpg-keys-0: 100% | 43.7 MiB/s | 179.0 KiB | 00m00s [ 8/172] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/172] Installing fedora-release-com 100% | 24.2 MiB/s | 24.8 KiB | 00m00s [ 10/172] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/172] Installing setup-0:2.15.0-26. 100% | 47.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/172] Installing filesystem-0:3.18- 100% | 2.6 MiB/s | 212.8 KiB | 00m00s [ 13/172] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 14/172] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [ 15/172] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 16/172] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 17/172] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 18/172] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 19/172] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 20/172] Installing gnulib-l10n-0:2024 100% | 161.6 MiB/s | 661.9 KiB | 00m00s [ 21/172] Installing coreutils-common-0 100% | 332.1 MiB/s | 11.3 MiB | 00m00s [ 22/172] Installing ncurses-base-0:6.5 100% | 69.0 MiB/s | 353.5 KiB | 00m00s [ 23/172] Installing bash-0:5.3.0-2.fc4 100% | 247.9 MiB/s | 8.4 MiB | 00m00s [ 24/172] Installing glibc-common-0:2.4 100% | 53.7 MiB/s | 1.0 MiB | 00m00s [ 25/172] Installing glibc-gconv-extra- 100% | 270.7 MiB/s | 7.3 MiB | 00m00s [ 26/172] Installing glibc-0:2.42-10.fc 100% | 163.5 MiB/s | 6.7 MiB | 00m00s [ 27/172] Installing ncurses-libs-0:6.5 100% | 232.6 MiB/s | 952.8 KiB | 00m00s [ 28/172] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 29/172] Installing zlib-ng-compat-0:2 100% | 158.7 MiB/s | 162.6 KiB | 00m00s [ 30/172] Installing bzip2-libs-0:1.0.8 100% | 79.8 MiB/s | 81.7 KiB | 00m00s [ 31/172] Installing libgpg-error-0:1.5 100% | 50.0 MiB/s | 921.1 KiB | 00m00s [ 32/172] Installing libstdc++-0:15.2.1 100% | 355.5 MiB/s | 2.8 MiB | 00m00s [ 33/172] Installing xz-libs-1:5.8.1-4. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 34/172] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 35/172] Installing libgcrypt-0:1.11.1 100% | 393.8 MiB/s | 1.6 MiB | 00m00s [ 36/172] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB | 00m00s [ 37/172] Installing gmp-1:6.3.0-4.fc43 100% | 264.8 MiB/s | 813.5 KiB | 00m00s [ 38/172] Installing libuuid-0:2.41.3-7 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [ 39/172] Installing popt-0:1.19-9.fc43 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 40/172] Installing npth-0:1.8-3.fc43. 100% | 49.5 MiB/s | 50.7 KiB | 00m00s [ 41/172] Installing libblkid-0:2.41.3- 100% | 257.3 MiB/s | 263.5 KiB | 00m00s [ 42/172] Installing libzstd-0:1.5.7-2. 100% | 391.2 MiB/s | 801.1 KiB | 00m00s [ 43/172] Installing elfutils-libelf-0: 100% | 373.7 MiB/s | 1.1 MiB | 00m00s [ 44/172] Installing sqlite-libs-0:3.50 100% | 303.3 MiB/s | 1.5 MiB | 00m00s [ 45/172] Installing libxcrypt-0:4.5.2- 100% | 140.6 MiB/s | 288.0 KiB | 00m00s [ 46/172] Installing gnupg2-gpgconf-0:2 100% | 17.6 MiB/s | 252.1 KiB | 00m00s [ 47/172] Installing libattr-0:2.5.2-6. 100% | 24.8 MiB/s | 25.4 KiB | 00m00s [ 48/172] Installing libacl-0:2.3.2-4.f 100% | 35.9 MiB/s | 36.8 KiB | 00m00s [ 49/172] Installing libunistring-0:1.1 100% | 287.8 MiB/s | 1.7 MiB | 00m00s [ 50/172] Installing libidn2-0:2.3.8-2. 100% | 181.9 MiB/s | 558.7 KiB | 00m00s [ 51/172] Installing libtasn1-0:4.21.0- 100% | 21.8 MiB/s | 178.6 KiB | 00m00s [ 52/172] Installing crypto-policies-0: 100% | 33.6 MiB/s | 172.2 KiB | 00m00s [ 53/172] Installing dwz-0:0.16-2.fc43. 100% | 17.6 MiB/s | 288.5 KiB | 00m00s [ 54/172] Installing gnupg2-verify-0:2. 100% | 24.4 MiB/s | 349.9 KiB | 00m00s [ 55/172] Installing mpfr-0:4.2.2-2.fc4 100% | 271.6 MiB/s | 834.4 KiB | 00m00s [ 56/172] Installing gawk-0:5.3.2-2.fc4 100% | 86.5 MiB/s | 1.8 MiB | 00m00s [ 57/172] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.1 KiB | 00m00s [ 58/172] Installing unzip-0:6.0-67.fc4 100% | 27.2 MiB/s | 389.8 KiB | 00m00s [ 59/172] Installing file-libs-0:5.46-8 100% | 564.6 MiB/s | 11.9 MiB | 00m00s [ 60/172] Installing file-0:5.46-8.fc43 100% | 7.1 MiB/s | 101.7 KiB | 00m00s [ 61/172] Installing libeconf-0:0.7.9-2 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 62/172] Installing libsepol-0:3.9-2.f 100% | 267.9 MiB/s | 822.9 KiB | 00m00s [ 63/172] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [ 64/172] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 65/172] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 66/172] Installing libcap-ng-0:0.9.2- 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [ 67/172] Installing audit-libs-0:4.1.4 100% | 186.2 MiB/s | 381.4 KiB | 00m00s [ 68/172] Installing pam-libs-0:1.7.1-4 100% | 126.1 MiB/s | 129.1 KiB | 00m00s [ 69/172] Installing libcap-0:2.76-3.fc 100% | 14.0 MiB/s | 214.3 KiB | 00m00s [ 70/172] Installing systemd-libs-0:258 100% | 333.8 MiB/s | 2.3 MiB | 00m00s [ 71/172] Installing lua-libs-0:5.4.8-4 100% | 138.3 MiB/s | 283.3 KiB | 00m00s [ 72/172] Installing alternatives-0:1.3 100% | 4.4 MiB/s | 63.8 KiB | 00m00s [ 73/172] Installing pcre2-0:10.47-1.fc 100% | 229.2 MiB/s | 704.1 KiB | 00m00s [ 74/172] Installing libselinux-0:3.9-5 100% | 189.8 MiB/s | 194.4 KiB | 00m00s [ 75/172] Installing grep-0:3.12-2.fc43 100% | 55.7 MiB/s | 1.0 MiB | 00m00s [ 76/172] Installing sed-0:4.9-5.fc43.x 100% | 47.0 MiB/s | 865.5 KiB | 00m00s [ 77/172] Installing findutils-1:4.10.0 100% | 92.9 MiB/s | 1.9 MiB | 00m00s [ 78/172] Installing xz-1:5.8.1-4.fc43. 100% | 66.6 MiB/s | 1.3 MiB | 00m00s [ 79/172] Installing libmount-0:2.41.3- 100% | 182.5 MiB/s | 373.8 KiB | 00m00s [ 80/172] Installing libffi-0:3.5.2-1.f 100% | 83.2 MiB/s | 85.2 KiB | 00m00s [ 81/172] Installing p11-kit-0:0.26.2-1 100% | 114.1 MiB/s | 2.5 MiB | 00m00s [ 82/172] Installing p11-kit-trust-0:0. 100% | 19.1 MiB/s | 468.2 KiB | 00m00s [ 83/172] Installing openssl-libs-1:3.5 100% | 330.0 MiB/s | 8.9 MiB | 00m00s [ 84/172] Installing coreutils-0:9.7-8. 100% | 147.4 MiB/s | 5.5 MiB | 00m00s [ 85/172] Installing ca-certificates-0: 100% | 1.7 MiB/s | 2.5 MiB | 00m01s [ 86/172] Installing gzip-0:1.13-4.fc43 100% | 25.7 MiB/s | 394.4 KiB | 00m00s [ 87/172] Installing libfsverity-0:1.6- 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 88/172] Installing rpm-sequoia-0:1.10 100% | 337.8 MiB/s | 2.4 MiB | 00m00s [ 89/172] Installing libevent-0:2.1.12- 100% | 288.7 MiB/s | 886.8 KiB | 00m00s [ 90/172] Installing util-linux-core-0: 100% | 74.0 MiB/s | 1.5 MiB | 00m00s [ 91/172] Installing tar-2:1.35-6.fc43. 100% | 128.6 MiB/s | 3.0 MiB | 00m00s [ 92/172] Installing libsemanage-0:3.9- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 93/172] Installing systemd-standalone 100% | 19.2 MiB/s | 294.2 KiB | 00m00s [ 94/172] Installing rpm-libs-0:6.0.1-1 100% | 228.3 MiB/s | 935.3 KiB | 00m00s [ 95/172] Installing libusb1-0:1.0.29-4 100% | 18.8 MiB/s | 172.9 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 96/172] Installing tpm2-tss-0:4.1.3-8 100% | 224.6 MiB/s | 1.6 MiB | 00m00s [ 97/172] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [ 98/172] Installing gnupg2-gpg-agent-0 100% | 27.5 MiB/s | 675.4 KiB | 00m00s [ 99/172] Installing zstd-0:1.5.7-2.fc4 100% | 95.0 MiB/s | 1.7 MiB | 00m00s [100/172] Installing zip-0:3.0-44.fc43. 100% | 42.6 MiB/s | 698.4 KiB | 00m00s [101/172] Installing gnupg2-keyboxd-0:2 100% | 28.3 MiB/s | 202.7 KiB | 00m00s [102/172] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [103/172] Installing liblastlog2-0:2.41 100% | 5.9 MiB/s | 36.0 KiB | 00m00s [104/172] Installing libfdisk-0:2.41.3- 100% | 186.3 MiB/s | 381.6 KiB | 00m00s [105/172] Installing nettle-0:3.10.1-2. 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [106/172] Installing gnutls-0:3.8.12-1. 100% | 332.6 MiB/s | 3.7 MiB | 00m00s [107/172] Installing libxml2-0:2.12.10- 100% | 85.2 MiB/s | 1.7 MiB | 00m00s [108/172] Installing libarchive-0:3.8.4 100% | 233.7 MiB/s | 957.2 KiB | 00m00s [109/172] Installing bzip2-0:1.0.8-21.f 100% | 7.0 MiB/s | 99.8 KiB | 00m00s [110/172] Installing add-determinism-0: 100% | 115.1 MiB/s | 2.3 MiB | 00m00s [111/172] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [112/172] Installing cpio-0:2.15-6.fc43 100% | 64.7 MiB/s | 1.1 MiB | 00m00s [113/172] Installing diffutils-0:3.12-3 100% | 82.2 MiB/s | 1.6 MiB | 00m00s [114/172] Installing ed-0:1.22.2-1.fc43 100% | 9.8 MiB/s | 150.4 KiB | 00m00s [115/172] Installing patch-0:2.8-2.fc43 100% | 15.6 MiB/s | 224.3 KiB | 00m00s [116/172] Installing libgomp-0:15.2.1-7 100% | 265.1 MiB/s | 542.9 KiB | 00m00s [117/172] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [118/172] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [119/172] Installing pkgconf-0:2.3.0-3. 100% | 5.9 MiB/s | 91.0 KiB | 00m00s [120/172] Installing pkgconf-pkg-config 100% | 118.2 KiB/s | 1.8 KiB | 00m00s [121/172] Installing gdbm-libs-1:1.23-1 100% | 64.2 MiB/s | 131.6 KiB | 00m00s [122/172] Installing cyrus-sasl-lib-0:2 100% | 109.3 MiB/s | 2.3 MiB | 00m00s [123/172] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [124/172] Installing openldap-0:2.6.13- 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [125/172] Installing gnupg2-dirmngr-0:2 100% | 30.3 MiB/s | 621.1 KiB | 00m00s [126/172] Installing gnupg2-0:2.4.9-5.f 100% | 226.4 MiB/s | 6.6 MiB | 00m00s [127/172] Installing rpm-sign-libs-0:6. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [128/172] Installing gpgverify-0:2.2-3. 100% | 0.0 B/s | 9.4 KiB | 00m00s [129/172] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [130/172] Installing libnghttp2-0:1.66. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [131/172] Installing keyutils-libs-0:1. 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [132/172] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.2 KiB | 00m00s [133/172] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [134/172] Installing krb5-libs-0:1.22.2 100% | 333.9 MiB/s | 2.3 MiB | 00m00s [135/172] Installing libssh-0:0.11.4-1. 100% | 280.2 MiB/s | 573.9 KiB | 00m00s [136/172] Installing libbrotli-0:1.2.0- 100% | 282.4 MiB/s | 867.7 KiB | 00m00s [137/172] Installing libcurl-0:8.15.0-5 100% | 294.4 MiB/s | 904.3 KiB | 00m00s [138/172] Installing curl-0:8.15.0-5.fc 100% | 16.8 MiB/s | 464.0 KiB | 00m00s [139/172] Installing rpm-0:6.0.1-1.fc43 100% | 66.1 MiB/s | 2.6 MiB | 00m00s [140/172] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [141/172] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [142/172] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [143/172] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [144/172] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/172] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [146/172] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [147/172] Installing elfutils-libs-0:0. 100% | 224.4 MiB/s | 689.3 KiB | 00m00s [148/172] Installing elfutils-debuginfo 100% | 5.3 MiB/s | 86.3 KiB | 00m00s [149/172] Installing elfutils-0:0.194-1 100% | 127.4 MiB/s | 2.9 MiB | 00m00s [150/172] Installing binutils-0:2.45.1- 100% | 285.2 MiB/s | 27.4 MiB | 00m00s [151/172] Installing gdb-minimal-0:17.1 100% | 238.7 MiB/s | 13.6 MiB | 00m00s [152/172] Installing debugedit-0:5.2-3. 100% | 13.3 MiB/s | 217.3 KiB | 00m00s [153/172] Installing rpm-build-libs-0:6 100% | 129.5 MiB/s | 265.2 KiB | 00m00s [154/172] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [155/172] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [156/172] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [157/172] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [158/172] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [159/172] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [160/172] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [161/172] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [162/172] Installing rpm-build-0:6.0.1- 100% | 18.1 MiB/s | 296.4 KiB | 00m00s [163/172] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [164/172] Installing redhat-rpm-config- 100% | 92.3 MiB/s | 189.1 KiB | 00m00s [165/172] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [166/172] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [167/172] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [168/172] Installing python-srpm-macros 100% | 25.8 MiB/s | 52.8 KiB | 00m00s [169/172] Installing util-linux-0:2.41. 100% | 91.7 MiB/s | 3.6 MiB | 00m00s [170/172] Installing shadow-utils-2:4.1 100% | 116.7 MiB/s | 4.0 MiB | 00m00s [171/172] Installing which-0:2.23-3.fc4 100% | 5.2 MiB/s | 85.7 KiB | 00m00s [172/172] Installing info-0:7.2-7.fc43. 100% | 187.8 KiB/s | 354.3 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-3.fc43.x86_64 alternatives-1.33-3.fc43.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.4-1.fc43.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45.1-4.fc43.x86_64 build-reproducibility-srpm-macros-0.6.0-3.fc43.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-1.2.fc43.noarch coreutils-9.7-8.fc43.x86_64 coreutils-common-9.7-8.fc43.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20251125-1.git63291f8.fc43.noarch curl-8.15.0-5.fc43.x86_64 cyrus-sasl-lib-2.1.28-33.fc43.x86_64 debugedit-5.2-3.fc43.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc43.x86_64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.194-1.fc43.x86_64 elfutils-debuginfod-client-0.194-1.fc43.x86_64 elfutils-default-yama-scope-0.194-1.fc43.noarch elfutils-libelf-0.194-1.fc43.x86_64 elfutils-libs-0.194-1.fc43.x86_64 fedora-gpg-keys-43-1.noarch fedora-release-43-26.noarch fedora-release-common-43-26.noarch fedora-release-identity-basic-43-26.noarch fedora-repos-43-1.noarch file-5.46-8.fc43.x86_64 file-libs-5.46-8.fc43.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc43.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-17.1-4.fc43.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42-10.fc43.x86_64 glibc-common-2.42-10.fc43.x86_64 glibc-gconv-extra-2.42-10.fc43.x86_64 glibc-minimal-langpack-2.42-10.fc43.x86_64 gmp-6.3.0-4.fc43.x86_64 gnat-srpm-macros-7-1.fc43.noarch gnulib-l10n-20241231-1.fc43.noarch gnupg2-2.4.9-5.fc43.x86_64 gnupg2-dirmngr-2.4.9-5.fc43.x86_64 gnupg2-gpg-agent-2.4.9-5.fc43.x86_64 gnupg2-gpgconf-2.4.9-5.fc43.x86_64 gnupg2-keyboxd-2.4.9-5.fc43.x86_64 gnupg2-verify-2.4.9-5.fc43.x86_64 gnutls-3.8.12-1.fc43.x86_64 go-srpm-macros-3.8.0-1.fc43.noarch gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.13-4.fc43.x86_64 ima-evm-utils-libs-1.6.2-6.fc43.x86_64 info-7.2-7.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.22.2-2.fc43.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.4-1.fc43.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.3-7.fc43.x86_64 libbrotli-1.2.0-1.fc43.x86_64 libcap-2.76-3.fc43.x86_64 libcap-ng-0.9.2-1.fc43.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.15.0-5.fc43.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.3-7.fc43.x86_64 libffi-3.5.2-1.fc43.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-7.fc43.x86_64 libgcrypt-1.11.1-3.fc43.x86_64 libgomp-15.2.1-7.fc43.x86_64 libgpg-error-1.55-2.fc43.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.3-7.fc43.x86_64 libmount-2.41.3-7.fc43.x86_64 libnghttp2-1.66.0-2.fc43.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-5.fc43.x86_64 libsemanage-3.9-4.fc43.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.3-7.fc43.x86_64 libssh-0.11.4-1.fc43.x86_64 libssh-config-0.11.4-1.fc43.noarch libstdc++-15.2.1-7.fc43.x86_64 libtasn1-4.21.0-1.fc43.x86_64 libtool-ltdl-2.5.4-8.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-4.fc43.x86_64 libuuid-2.41.3-7.fc43.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.5.2-1.fc43.x86_64 libxml2-2.12.10-5.fc43.x86_64 libzstd-1.5.7-2.fc43.x86_64 lua-libs-5.4.8-4.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.13-1.fc43.x86_64 openssl-libs-3.5.4-2.fc43.x86_64 p11-kit-0.26.2-1.fc43.x86_64 p11-kit-trust-0.26.2-1.fc43.x86_64 package-notes-srpm-macros-0.5-15.fc43.noarch pam-libs-1.7.1-4.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.47-1.fc43.x86_64 pcre2-syntax-10.47-1.fc43.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20260116-1.fc43.noarch pyproject-srpm-macros-1.18.7-1.fc43.noarch python-srpm-macros-3.14-5.fc43.noarch qt5-srpm-macros-5.15.18-1.fc43.noarch qt6-srpm-macros-6.10.2-1.fc43.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-11.fc43.noarch rpm-6.0.1-1.fc43.x86_64 rpm-build-6.0.1-1.fc43.x86_64 rpm-build-libs-6.0.1-1.fc43.x86_64 rpm-libs-6.0.1-1.fc43.x86_64 rpm-sequoia-1.10.1-1.fc43.x86_64 rpm-sign-libs-6.0.1-1.fc43.x86_64 rust-srpm-macros-28.4-1.fc43.noarch sed-4.9-5.fc43.x86_64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.2-2.fc43.x86_64 systemd-libs-258.7-1.fc43.x86_64 systemd-standalone-sysusers-258.7-1.fc43.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-67.fc43.x86_64 util-linux-2.41.3-7.fc43.x86_64 util-linux-core-2.41.3-7.fc43.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-4.fc43.x86_64 xz-libs-5.8.1-4.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.3.3-2.fc43.x86_64 zstd-1.5.7-2.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1774742400 Wrote: /builddir/build/SRPMS/freesurfer-8.2.0-2.fc43.src.rpm RPM build warnings: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-x86_64-1774820887.469191/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-wg3g474i/freesurfer/freesurfer.spec) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/freesurfer-8.2.0-2.fc43.src.rpm) Config(fedora-43-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-bootstrap-1774820887.469191/root. INFO: reusing tmpfs at /var/lib/mock/fedora-43-x86_64-bootstrap-1774820887.469191/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-x86_64-1774820887.469191/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.x86_64 rpm-sequoia-1.10.1-1.fc43.x86_64 dnf5-5.2.18.0-2.fc43.x86_64 dnf5-plugins-5.2.18.0-2.fc43.x86_64 Finish: chroot init Start: build phase for freesurfer-8.2.0-2.fc43.src.rpm Start: build setup for freesurfer-8.2.0-2.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1774742400 Wrote: /builddir/build/SRPMS/freesurfer-8.2.0-2.fc43.src.rpm RPM build warnings: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Updating and loading repositories: Copr repository 100% | 3.8 KiB/s | 1.5 KiB | 00m00s fedora 100% | 32.7 KiB/s | 27.4 KiB | 00m01s updates 100% | 35.8 KiB/s | 24.6 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: InsightToolkit5-devel x86_64 5.4.5-15.fc43 copr_base 28.3 MiB blas-devel x86_64 3.12.0-10.fc43 fedora 132.4 KiB cmake x86_64 3.31.11-1.fc43 updates 34.5 MiB expat-devel x86_64 2.7.3-1.fc43 updates 208.4 KiB freeglut-devel x86_64 3.8.0-1.fc43 updates 2.3 MiB gcc-c++ x86_64 15.2.1-7.fc43 updates 41.4 MiB gcc-gfortran x86_64 15.2.1-7.fc43 updates 40.4 MiB gifticlib-devel x86_64 1.0.9-29.fc43 fedora 22.2 KiB lapack-devel x86_64 3.12.0-10.fc43 fedora 1.6 MiB libX11-devel x86_64 1.8.13-1.fc43 updates 1.0 MiB libXi-devel x86_64 1.8.2-3.fc43 fedora 132.5 KiB libXmu-devel x86_64 1.2.1-4.fc43 fedora 66.2 KiB libXt-devel x86_64 1.3.1-3.fc43 fedora 1.6 MiB libjpeg-turbo-devel x86_64 3.1.3-1.fc43 updates 353.9 KiB libpng-devel x86_64 2:1.6.55-1.fc43 updates 887.7 KiB libtiff-devel x86_64 4.7.1-1.fc43 updates 805.2 KiB libxml2-devel x86_64 2.12.10-5.fc43 fedora 3.4 MiB ninja-build x86_64 1.13.1-4.fc43 fedora 480.7 KiB openssl-devel x86_64 1:3.5.4-2.fc43 updates 4.6 MiB python3-devel x86_64 3.14.3-1.fc43 updates 1.9 MiB tetgen-devel x86_64 1.5.0-30.fc43 fedora 131.6 KiB vtk-devel x86_64 9.5.2-11.fc43 copr_base 30.2 MiB xxd x86_64 2:9.2.240-1.fc43 updates 33.4 KiB zlib-ng-compat-devel x86_64 2.3.3-2.fc43 updates 107.0 KiB Installing dependencies: CharLS x86_64 2.4.3-2.fc43 updates 336.1 KiB InsightToolkit5 x86_64 5.4.5-15.fc43 copr_base 39.2 MiB InsightToolkit5-vtk x86_64 5.4.5-15.fc43 copr_base 1.1 MiB InsightToolkit5-vtk-devel x86_64 5.4.5-15.fc43 copr_base 22.4 KiB PEGTL-devel x86_64 2.8.3-13.fc43 fedora 678.1 KiB SDL3 x86_64 3.4.0-3.fc43 updates 3.0 MiB abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB abseil-cpp x86_64 20250814.1-1.fc43 fedora 2.5 MiB adwaita-cursor-theme noarch 49.0-1.fc43 fedora 11.4 MiB adwaita-icon-theme noarch 49.0-1.fc43 fedora 1.2 MiB adwaita-icon-theme-legacy noarch 46.2-4.fc43 fedora 2.1 MiB annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc x86_64 12.99-1.fc43 fedora 1.0 MiB armadillo x86_64 12.8.1-7.fc43 fedora 82.0 KiB arpack x86_64 3.9.1-7.fc43 fedora 641.8 KiB at-spi2-atk x86_64 2.58.4-1.fc43 updates 283.7 KiB at-spi2-core x86_64 2.58.4-1.fc43 updates 1.5 MiB atk x86_64 2.58.4-1.fc43 updates 248.6 KiB autoconf noarch 2.72-7.fc43 fedora 2.8 MiB automake noarch 1.18.1-2.fc43 fedora 1.8 MiB avahi-glib x86_64 0.9~rc2-6.fc43 fedora 19.6 KiB avahi-libs x86_64 0.9~rc2-6.fc43 fedora 171.6 KiB blas x86_64 3.12.0-10.fc43 fedora 1.8 MiB blas64 x86_64 3.12.0-10.fc43 fedora 1.3 MiB blas64_ x86_64 3.12.0-10.fc43 fedora 1.3 MiB blosc x86_64 1.21.6-7.fc43 fedora 126.2 KiB boost x86_64 1.83.0-17.fc43 fedora 1.3 KiB boost-atomic x86_64 1.83.0-17.fc43 fedora 20.9 KiB boost-chrono x86_64 1.83.0-17.fc43 fedora 37.5 KiB boost-container x86_64 1.83.0-17.fc43 fedora 65.4 KiB boost-context x86_64 1.83.0-17.fc43 fedora 12.4 KiB boost-contract x86_64 1.83.0-17.fc43 fedora 99.1 KiB boost-coroutine x86_64 1.83.0-17.fc43 fedora 21.1 KiB boost-date-time x86_64 1.83.0-17.fc43 fedora 12.2 KiB boost-devel x86_64 1.83.0-17.fc43 fedora 143.0 MiB boost-fiber x86_64 1.83.0-17.fc43 fedora 78.7 KiB boost-filesystem x86_64 1.83.0-17.fc43 fedora 143.6 KiB boost-graph x86_64 1.83.0-17.fc43 fedora 363.1 KiB boost-iostreams x86_64 1.83.0-17.fc43 fedora 90.6 KiB boost-json x86_64 1.83.0-17.fc43 fedora 333.1 KiB boost-locale x86_64 1.83.0-17.fc43 fedora 617.7 KiB boost-log x86_64 1.83.0-17.fc43 fedora 1.5 MiB boost-math x86_64 1.83.0-17.fc43 fedora 642.6 KiB boost-nowide x86_64 1.83.0-17.fc43 fedora 20.8 KiB boost-numpy3 x86_64 1.83.0-17.fc43 fedora 57.6 KiB boost-program-options x86_64 1.83.0-17.fc43 fedora 280.8 KiB boost-python3 x86_64 1.83.0-17.fc43 fedora 258.2 KiB boost-random x86_64 1.83.0-17.fc43 fedora 29.6 KiB boost-regex x86_64 1.83.0-17.fc43 fedora 291.1 KiB boost-serialization x86_64 1.83.0-17.fc43 fedora 441.6 KiB boost-stacktrace x86_64 1.83.0-17.fc43 fedora 59.8 KiB boost-system x86_64 1.83.0-17.fc43 fedora 12.2 KiB boost-test x86_64 1.83.0-17.fc43 fedora 647.2 KiB boost-thread x86_64 1.83.0-17.fc43 fedora 132.7 KiB boost-timer x86_64 1.83.0-17.fc43 fedora 21.0 KiB boost-type_erasure x86_64 1.83.0-17.fc43 fedora 54.1 KiB boost-wave x86_64 1.83.0-17.fc43 fedora 868.3 KiB brotli x86_64 1.2.0-1.fc43 updates 33.6 KiB brotli-devel x86_64 1.2.0-1.fc43 updates 65.9 KiB bubblewrap x86_64 0.11.0-2.fc43 fedora 135.0 KiB bzip2-devel x86_64 1.0.8-21.fc43 fedora 309.8 KiB cairo x86_64 1.18.4-2.fc43 fedora 1.8 MiB cairo-devel x86_64 1.18.4-2.fc43 fedora 2.3 MiB cairo-gobject x86_64 1.18.4-2.fc43 fedora 31.1 KiB cfitsio x86_64 4.6.3-1.fc43 updates 1.9 MiB cgnslib x86_64 4.5.1-1.fc43 updates 1.3 MiB cgnslib-common noarch 4.5.1-1.fc43 updates 508.9 KiB cgnslib-devel x86_64 4.5.1-1.fc43 updates 159.7 KiB cgnslib-libs x86_64 4.5.1-1.fc43 updates 900.4 KiB cmake-data noarch 3.31.11-1.fc43 updates 8.5 MiB cmake-filesystem x86_64 3.31.11-1.fc43 updates 0.0 B cmake-rpm-macros noarch 3.31.11-1.fc43 updates 8.2 KiB colord-libs x86_64 1.4.8-2.fc43 fedora 830.7 KiB cpp x86_64 15.2.1-7.fc43 updates 38.0 MiB cups-filesystem noarch 1:2.4.16-7.fc43 updates 0.0 B cups-libs x86_64 1:2.4.16-7.fc43 updates 618.7 KiB dbus x86_64 1:1.16.0-4.fc43 fedora 0.0 B dbus-libs x86_64 1:1.16.0-4.fc43 fedora 345.5 KiB dcmtk x86_64 3.7.0-1.fc43 copr_base 40.8 MiB dcmtk-devel x86_64 3.7.0-1.fc43 copr_base 14.7 MiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB double-conversion x86_64 3.4.0-1.fc43 updates 97.9 KiB double-conversion-devel x86_64 3.4.0-1.fc43 updates 103.7 KiB duktape x86_64 2.7.0-10.fc43 fedora 615.8 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B expat x86_64 2.7.3-1.fc43 updates 301.1 KiB fftw x86_64 3.3.10-16.fc43 fedora 182.0 KiB fftw-devel x86_64 3.3.10-16.fc43 fedora 284.2 KiB fftw-libs x86_64 3.3.10-16.fc43 fedora 0.0 B fftw-libs-double x86_64 3.3.10-16.fc43 fedora 3.4 MiB fftw-libs-long x86_64 3.3.10-16.fc43 fedora 1.5 MiB fftw-libs-quad x86_64 3.3.10-16.fc43 fedora 2.5 MiB fftw-libs-single x86_64 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perl-FileHandle noarch 2.05-522.fc43 updates 9.4 KiB perl-Getopt-Long noarch 1:2.58-520.fc43 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-522.fc43 updates 11.2 KiB perl-HTTP-Tiny noarch 0.090-521.fc43 fedora 154.4 KiB perl-IO x86_64 1.55-522.fc43 updates 147.4 KiB perl-IO-Socket-IP noarch 0.43-521.fc43 fedora 100.3 KiB perl-IO-Socket-SSL noarch 2.095-2.fc43 fedora 714.5 KiB perl-IPC-Open3 noarch 1.24-522.fc43 updates 27.7 KiB perl-MIME-Base32 noarch 1.303-24.fc43 fedora 30.7 KiB perl-MIME-Base64 x86_64 3.16-520.fc43 fedora 42.0 KiB perl-Net-SSLeay x86_64 1.94-11.fc43 fedora 1.3 MiB perl-POSIX x86_64 2.23-522.fc43 updates 229.5 KiB perl-PathTools x86_64 3.94-520.fc43 fedora 180.0 KiB perl-Pod-Escapes noarch 1:1.07-520.fc43 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-521.fc43 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-3.fc43 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-520.fc43 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.70-1.fc43 fedora 144.9 KiB perl-SelectSaver noarch 1.02-522.fc43 updates 2.2 KiB perl-Socket x86_64 4:2.040-2.fc43 fedora 120.3 KiB perl-Storable x86_64 1:3.37-521.fc43 fedora 231.2 KiB perl-Symbol noarch 1.09-522.fc43 updates 6.8 KiB perl-Term-ANSIColor noarch 5.01-521.fc43 fedora 97.5 KiB perl-Term-Cap noarch 1.18-520.fc43 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-520.fc43 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-520.fc43 fedora 22.6 KiB perl-Thread-Queue noarch 3.14-520.fc43 fedora 28.9 KiB perl-Time-Local noarch 2:1.350-520.fc43 fedora 69.0 KiB perl-URI noarch 5.34-2.fc43 updates 268.0 KiB perl-base noarch 2.27-522.fc43 updates 12.6 KiB perl-constant noarch 1.33-521.fc43 fedora 26.2 KiB perl-if noarch 0.61.000-522.fc43 updates 5.8 KiB perl-interpreter x86_64 4:5.42.1-522.fc43 updates 118.6 KiB perl-libnet noarch 3.15-521.fc43 fedora 289.4 KiB perl-libs x86_64 4:5.42.1-522.fc43 updates 11.5 MiB perl-locale noarch 1.13-522.fc43 updates 6.1 KiB perl-mro x86_64 1.29-522.fc43 updates 41.6 KiB perl-overload noarch 1.40-522.fc43 updates 71.6 KiB perl-overloading noarch 0.02-522.fc43 updates 4.9 KiB perl-parent noarch 1:0.244-520.fc43 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-520.fc43 fedora 317.5 KiB perl-threads x86_64 1:2.43-520.fc43 fedora 115.1 KiB perl-threads-shared x86_64 1.70-520.fc43 fedora 83.6 KiB perl-vars noarch 1.05-522.fc43 updates 3.9 KiB pixman x86_64 0.46.2-2.fc43 fedora 710.3 KiB pixman-devel x86_64 0.46.2-2.fc43 fedora 56.1 KiB poppler x86_64 25.07.0-3.fc43 updates 3.8 MiB poppler-data noarch 0.4.11-10.fc43 fedora 12.3 MiB proj x86_64 9.6.2-2.fc43 fedora 4.5 MiB proj-data noarch 9.6.2-2.fc43 fedora 9.3 MiB proj-devel x86_64 9.6.2-2.fc43 fedora 561.6 KiB protobuf x86_64 3.19.6-18.fc43 fedora 3.3 MiB publicsuffix-list noarch 20260116-1.fc43 updates 342.2 KiB pugixml x86_64 1.15-1.fc43 fedora 274.7 KiB pugixml-devel x86_64 1.15-1.fc43 fedora 67.2 KiB pyproject-rpm-macros noarch 1.18.7-1.fc43 updates 115.5 KiB python-pip-wheel noarch 25.1.1-18.fc43 fedora 1.2 MiB python-rpm-macros noarch 3.14-5.fc43 fedora 23.2 KiB python3 x86_64 3.14.3-1.fc43 updates 28.9 KiB python3-libs x86_64 3.14.3-1.fc43 updates 43.2 MiB python3-numpy x86_64 1:2.3.5-1.fc43 updates 41.4 MiB python3-numpy-f2py x86_64 1:2.3.5-1.fc43 updates 2.1 MiB python3-packaging noarch 25.0-7.fc43 fedora 607.4 KiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-5.fc43 fedora 6.5 KiB python3-vtk x86_64 9.5.2-11.fc43 copr_base 102.7 MiB qt6-filesystem x86_64 6.10.2-1.fc43 updates 0.0 B qt6-qtbase x86_64 6.10.2-2.fc43 updates 13.2 MiB qt6-qtbase-common noarch 6.10.2-2.fc43 updates 76.0 B qt6-qtbase-devel x86_64 6.10.2-2.fc43 updates 21.9 MiB qt6-qtbase-gui x86_64 6.10.2-2.fc43 updates 26.3 MiB qt6-qtbase-ibase x86_64 6.10.2-2.fc43 updates 157.9 KiB qt6-qtbase-mysql x86_64 6.10.2-2.fc43 updates 113.7 KiB qt6-qtbase-odbc x86_64 6.10.2-2.fc43 updates 145.2 KiB qt6-qtbase-postgresql x86_64 6.10.2-2.fc43 updates 129.5 KiB qt6-qtdeclarative x86_64 6.10.2-2.fc43 updates 55.1 MiB qt6-qtdeclarative-devel x86_64 6.10.2-2.fc43 updates 23.8 MiB qt6-qtsvg x86_64 6.10.2-1.fc43 updates 886.2 KiB qt6-rpm-macros noarch 6.10.2-1.fc43 updates 3.0 KiB rav1e-libs x86_64 0.8.1-2.fc43 updates 3.1 MiB re2 x86_64 2:20251105-1.fc43 updates 583.4 KiB rhash x86_64 1.4.5-3.fc43 fedora 351.1 KiB sdl2-compat x86_64 2.32.64-1.fc43 updates 408.4 KiB shared-mime-info x86_64 2.4-2.fc43 fedora 5.2 MiB snappy x86_64 1.2.2-2.fc43 fedora 71.8 KiB spirv-tools-libs x86_64 2026.1-2.fc43 updates 5.9 MiB sqlite x86_64 3.50.2-2.fc43 fedora 1.8 MiB sqlite-devel x86_64 3.50.2-2.fc43 fedora 684.1 KiB svt-av1-libs x86_64 3.1.2-1.fc43 fedora 5.6 MiB sysprof-capture-devel x86_64 49.0-1.fc43 fedora 803.7 KiB tcl8 x86_64 1:8.6.16-2.fc43 fedora 4.2 MiB tetgen x86_64 1.5.0-30.fc43 fedora 648.3 KiB thrift x86_64 0.20.0-8.fc43 fedora 5.5 MiB tk8 x86_64 1:8.6.16-2.fc43 fedora 3.1 MiB tslib x86_64 1.23-2.fc43 fedora 416.1 KiB tzdata noarch 2026a-1.fc43 updates 1.6 MiB unixODBC x86_64 2.3.14-2.fc43 updates 1.0 MiB uriparser x86_64 1.0.0-1.fc43 updates 178.8 KiB utf8cpp-devel noarch 4.0.8-1.fc43 fedora 140.8 KiB utf8proc x86_64 2.10.0-2.fc43 fedora 372.0 KiB vim-filesystem noarch 2:9.2.240-1.fc43 updates 40.0 B vtk x86_64 9.5.2-11.fc43 copr_base 175.3 MiB vtk-qt x86_64 9.5.2-11.fc43 copr_base 1.4 MiB vulkan-headers noarch 1.4.341.0-1.fc43 updates 36.1 MiB vulkan-loader x86_64 1.4.341.0-1.fc43 updates 569.6 KiB vulkan-loader-devel x86_64 1.4.341.0-1.fc43 updates 8.0 KiB wayland-devel x86_64 1.24.0-1.fc43 fedora 691.9 KiB xcb-util x86_64 0.4.1-8.fc43 fedora 26.3 KiB xcb-util-cursor x86_64 0.1.5-4.fc43 fedora 23.2 KiB xcb-util-image x86_64 0.4.1-8.fc43 fedora 22.2 KiB xcb-util-keysyms x86_64 0.4.1-8.fc43 fedora 16.7 KiB xcb-util-renderutil x86_64 0.3.10-8.fc43 fedora 24.4 KiB xcb-util-wm x86_64 0.4.2-8.fc43 fedora 81.2 KiB xerces-c x86_64 3.3.0-8.fc43 fedora 3.8 MiB xkeyboard-config noarch 2.46-1.fc43 updates 10.2 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-5.fc43 fedora 1.7 MiB xprop x86_64 1.2.8-4.fc43 fedora 54.7 KiB xz-devel x86_64 1:5.8.1-4.fc43 updates 258.8 KiB Transaction Summary: Installing: 517 packages Total size of inbound packages is 494 MiB. 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Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1774742400 Wrote: /builddir/build/SRPMS/freesurfer-8.2.0-2.fc43.src.rpm RPM build warnings: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Updating and loading repositories: Copr repository 100% | 30.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 116.0 KiB/s | 27.4 KiB | 00m00s updates 100% | 201.5 KiB/s | 24.6 KiB | 00m00s Repositories loaded. Nothing to do. Package "InsightToolkit5-devel-5.4.5-15.fc43.x86_64" is already installed. Package "blas-devel-3.12.0-10.fc43.x86_64" is already installed. Package "cmake-3.31.11-1.fc43.x86_64" is already installed. Package "expat-devel-2.7.3-1.fc43.x86_64" is already installed. Package "freeglut-devel-3.8.0-1.fc43.x86_64" is already installed. Package "gcc-c++-15.2.1-7.fc43.x86_64" is already installed. Package "gcc-gfortran-15.2.1-7.fc43.x86_64" is already installed. Package "gifticlib-devel-1.0.9-29.fc43.x86_64" is already installed. Package "lapack-devel-3.12.0-10.fc43.x86_64" is already installed. Package "libX11-devel-1.8.13-1.fc43.x86_64" is already installed. Package "libXi-devel-1.8.2-3.fc43.x86_64" is already installed. Package "libXmu-devel-1.2.1-4.fc43.x86_64" is already installed. Package "libXt-devel-1.3.1-3.fc43.x86_64" is already installed. Package "libjpeg-turbo-devel-3.1.3-1.fc43.x86_64" is already installed. Package "libpng-devel-2:1.6.55-1.fc43.x86_64" is already installed. Package "libtiff-devel-4.7.1-1.fc43.x86_64" is already installed. Package "libxml2-devel-2.12.10-5.fc43.x86_64" is already installed. Package "ninja-build-1.13.1-4.fc43.x86_64" is already installed. Package "openssl-devel-1:3.5.4-2.fc43.x86_64" is already installed. Package "python3-devel-3.14.3-1.fc43.x86_64" is already installed. Package "tetgen-devel-1.5.0-30.fc43.x86_64" is already installed. Package "vtk-devel-9.5.2-11.fc43.x86_64" is already installed. Package "xxd-2:9.2.240-1.fc43.x86_64" is already installed. Package "zlib-ng-compat-devel-2.3.3-2.fc43.x86_64" is already installed. Finish: build setup for freesurfer-8.2.0-2.fc43.src.rpm Start: rpmbuild freesurfer-8.2.0-2.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1774742400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.cdafFR Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NqFOII + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + cd /builddir/build/BUILD/freesurfer-8.2.0-build + rm -rf freesurfer-8.2.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/freesurfer-8.2.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd freesurfer-8.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/freesurfer-fedora-host-os.patch + /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i 's/COND_ExtractConditions(CTNBOOLEAN(\*callback) ())/COND_ExtractConditions(CTNBOOLEAN(*callback) (CONDITION, const char*))/' packages/dicom/condition.h + sed -i 's/COND_EstablishCallback(void (\*callback) ())/COND_EstablishCallback(void (*callback) (CONDITION, const char*))/' packages/dicom/condition.h + sed -i 's/LST_Sort(LST_HEAD \*\* list, size_t nodeSize, int (\*compare) ())/LST_Sort(LST_HEAD ** list, size_t nodeSize, int (*compare) (LST_NODE*, LST_NODE*))/' packages/dicom/lst.h + sed -i 's/add_compile_options(-w -fPIC)/add_compile_options(-w -fPIC -std=gnu89)/' packages/CMakeLists.txt + sed -i '/^ glut$/d;/^ gifti$/d;/^ tetgen$/d' packages/CMakeLists.txt + cat + cat + sed -i '\|/packages/gifti|d' utils/CMakeLists.txt + sed -i $'/target_link_libraries(utils/,/)/{\n s/\\bgifti\\b/giftiio/\n}' utils/CMakeLists.txt + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i 's|${CMAKE_SOURCE_DIR}/packages/tetgen|/usr/include|g' '{}' + + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i '/target_link_libraries/s/\btetgen\b/tet/g' '{}' + + sed -i 's/target_link_libraries(vtkutils tiff)/target_link_libraries(vtkutils tiff VTK::CommonCore VTK::CommonDataModel VTK::RenderingCore VTK::RenderingOpenGL2 VTK::FiltersCore VTK::FiltersSources VTK::ImagingCore)/' vtkutils/CMakeLists.txt + sed -i 's/VTK_LEGACY(void SetColorSpaceToHSVNoWrap())/\/\/ VTK_LEGACY removed/' vtkutils/vtkRGBATransferFunction.h + sed -i '/^void vtkRGBATransferFunction::SetColorSpaceToHSVNoWrap/,/^}/s/^/\/\//' vtkutils/vtkRGBATransferFunction.cxx + sed -i '/^install(CODE.*build-stamp/d' CMakeLists.txt + sed -i '/symlink(.*python.*bin.*python3)/d' CMakeLists.txt + echo '# Disabled for RPM build — no fspython' + sed -i 's|\${CMAKE_INSTALL_PREFIX}/\${INSTALL_DESTINATION}|$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/\${INSTALL_DESTINATION}|g' cmake/functions.cmake + sed -i $'/^function(install_append_help/,/^endfunction()/c\\\nfunction(install_append_help SCRIPT HELPTEXT DESTINATION)\\\n install_configured(${SCRIPT} DESTINATION ${DESTINATION})\\\n install(FILES ${HELPTEXT} DESTINATION docs/xml)\\\n add_test(${SCRIPT}_help_test bash -c "xmllint --noout ${CMAKE_CURRENT_SOURCE_DIR}/${HELPTEXT}")\\\nendfunction()' cmake/functions.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.r6fLg0 + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error' + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive' + export 'FFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -GNinja -DMINIMAL=ON -DBUILD_GUIS=OFF -DDISTRIBUTE_FSPYTHON=OFF -DINSTALL_PYTHON_DEPENDENCIES=OFF -DTIFF_SYSLIBS=ON -DGLUT_SYSLIBS=ON -DMARTINOS_BUILD=OFF -DWARNING_AS_ERROR=OFF -DBUILD_FORTRAN=ON -DINTEGRATE_SAMSEG=ON -DLINK_SHARED_AS_NEEDED=ON -DVTK_DIR=/usr/lib64/cmake/vtk -DITK_DIR=/usr/lib64/cmake/ITK-5.4 -DCMAKE_INSTALL_PREFIX=/usr/lib/freesurfer CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- The Fortran compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran - skipped CMake Warning at CMakeLists.txt:74 (message): FS_PACKAGES_DIR is NOT defined - build will be limited -- For HOST_OS=Fedora FSPYTHON_INSTALL_PREFIX=/usr/lib/freesurfer -- For HOST_OS=Fedora lineprof disabled -- For HOST_OS=Fedora TIFF_SYSLIBS=ON -- For HOST_OS=Fedora INTEGRATE_SAMSEG=ON -- No build type selected - defaulting to Release -- For HOST_OS=Fedora QT_SYSLIBS=ON -- For HOST_OS=Fedora VTK_SYSLIBS=ON -- For HOST_OS=Fedora ITK_SYSLIBS=ON -- For HOST_OS=Fedora GLUT_SYSLIBS=ON -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- For HOST_OS=Fedora C/C++ standard set to 17 for gcc/g++ version 15 -- Could NOT find PETSC (missing: PETSC_INCLUDE_DIR) -- Could NOT find ANN (missing: ANN_INCLUDE_DIR ANN_LIBRARIES) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Could NOT find OpenCV (missing: OpenCV_INCLUDE_DIR OpenCV_LIBRARIES) -- OpenSSL_INCLUDE_DIR=/usr/include -- OpenSSL_LIB_DIR=/lib64 -- Found X11: /usr/include -- For HOST_OS=Fedora X11_LIBRARIES=/usr/lib64/libX11.so;/usr/lib64/libXmu.so;/usr/lib64/libXt.so -- For HOST_OS=Fedora X11_INCLUDE_DIR=/usr/include -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") -- Found utf8cpp: /usr/include/utf8cpp -- Found JsonCpp: /usr/lib64/libjsoncpp.so (found suitable version "1.9.6", minimum required is "0.7.0") -- Found PEGTL: /usr/include/tao (found suitable version "2.8.3", minimum required is "2.0.0") -- Found PNG: /usr/lib64/libpng.so (found version "1.6.55") -- Found EXPAT: /usr/lib64/libexpat.so (found suitable version "2.7.3", minimum required is "2.5.0") -- Found LZ4: /usr/lib64/liblz4.so (found version "1.10.0") -- Found LZMA: /usr/lib64/liblzma.so (found version "5.8.1") -- Found JPEG: /usr/lib64/libjpeg.so (found version "62") -- Found TIFF: /usr/lib64/libtiff.so (found version "4.7.1") -- Could NOT find freetype (missing: freetype_DIR) -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.13.3") -- Found double-conversion: /usr/lib64/libdouble-conversion.so -- For HOST_OS=Fedora VTK_DIR=/usr/lib64/cmake/vtk -- Found HDF5: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libhdf5.so (found version "1.14.6") found components: CXX C HL -- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.3", minimum required is "3.14") found components: Interpreter Development.Module Development.Embed -- Performing Test HAVE_STDATOMIC -- Performing Test HAVE_STDATOMIC - Success -- Found WrapAtomic: TRUE -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found WrapOpenGL: TRUE -- Found WrapVulkanHeaders: /usr/include -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.10") -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.6") found components: C HL -- Found NetCDF: netcdf (found version "4.9.2") -- Found THEORA: /usr/lib64/libtheora.so -- Found OGG: /usr/lib64/libogg.so -- Found LibHaru: /usr/lib64/libhpdf.so (found suitable version "2.4.5", minimum required is "2.3.0") -- Found LibPROJ: /usr/lib64/libproj.so (found version "9.6.2") -- Found SQLite3: /usr/include (found version "3.50.2") -- Could NOT find freetype (missing: freetype_DIR) -- For HOST_OS=Fedora ITK_DIR=/usr/lib/cmake/ITK-5.4 -- Compiling source under build tree /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build CMake Deprecation Warning at packages/dcm2niix/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at packages/dcm2niix/ucm.cmake:13 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): packages/dcm2niix/CMakeLists.txt:6 (include) -- Performing Test ARM_CRC -- Performing Test ARM_CRC - Failed -- Performing Test HAS_SSE2 -- Performing Test HAS_SSE2 - Failed -- Build with JNIFTI support, USE_JNIFTI is ON -- For HOST_OS=Fedora dcm2niix ZLIB_IMPLEMENTATION=Miniz ZLIB_ROOT= CMake Deprecation Warning at packages/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.0 dev1 -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- For HOST_OS=Fedora CMAKE_CXX_COMPILER_ID=GNU -- For HOST_OS=Fedora CMAKE_CXX_FLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -- CMAKE_CXX_COMPILER_ID=GNU -- For HOST_OS Fedora CMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle CMake Warning at talairach_avi/CMakeLists.txt:82 (message): Not linking FORTRAN executables with static libgfortran -- Configuring done (6.0s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j8 --verbose Change Dir: 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/autoencoder.cpp.o -MF utils/CMakeFiles/utils.dir/autoencoder.cpp.o.d -o utils/CMakeFiles/utils.dir/autoencoder.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} 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-isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/annotation.cpp.o -MF utils/CMakeFiles/utils.dir/annotation.cpp.o.d -o utils/CMakeFiles/utils.dir/annotation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [210/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/Bruker.cpp.o -MF utils/CMakeFiles/utils.dir/Bruker.cpp.o.d -o utils/CMakeFiles/utils.dir/Bruker.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/Bruker.cpp [212/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/corio.cpp.o -MF utils/CMakeFiles/utils.dir/corio.cpp.o.d -o utils/CMakeFiles/utils.dir/corio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/corio.cpp [213/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cmat.cpp.o -MF utils/CMakeFiles/utils.dir/cmat.cpp.o.d -o utils/CMakeFiles/utils.dir/cmat.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cmat.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cmat.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cmat.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [214/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/class_array.cpp.o -MF utils/CMakeFiles/utils.dir/class_array.cpp.o.d -o utils/CMakeFiles/utils.dir/class_array.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/class_array.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/class_array.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/class_array.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [215/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ctrpoints.cpp.o -MF utils/CMakeFiles/utils.dir/ctrpoints.cpp.o.d -o utils/CMakeFiles/utils.dir/ctrpoints.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ctrpoints.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/ctrpoints.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ctrpoints.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [216/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/connectcomp.cpp.o -MF utils/CMakeFiles/utils.dir/connectcomp.cpp.o.d -o utils/CMakeFiles/utils.dir/connectcomp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/connectcomp.cpp [217/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DmyDisableOpenJPEG -DmyEnableJNIFTI -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -static-libstdc++ -static-libgcc -DNDEBUG -static-libstdc++ -static-libgcc -std=c++17 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -w -fPIC -std=gnu89 -MD -MT packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o -MF packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o.d -o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix/nii_dicom_batch.cpp [218/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dct.cpp.o -MF utils/CMakeFiles/utils.dir/dct.cpp.o.d -o utils/CMakeFiles/utils.dir/dct.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dct.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/dct.h:35, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dct.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [219/902] : && /usr/bin/cmake -E rm -f packages/dcm2niix/libdcm2niixfs.a && /usr/bin/ar qc packages/dcm2niix/libdcm2niixfs.a packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/dcm2niix_fswrapper.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/jpg_0XC3.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/ujpeg.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nifti1_io_core.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_foreign.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_ortho.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/cJSON.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/base64.cpp.o && /usr/bin/ranlib packages/dcm2niix/libdcm2niixfs.a && : [220/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/diag.cpp.o -MF utils/CMakeFiles/utils.dir/diag.cpp.o.d -o utils/CMakeFiles/utils.dir/diag.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/diag.cpp [221/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cvector.cpp.o -MF utils/CMakeFiles/utils.dir/cvector.cpp.o.d -o utils/CMakeFiles/utils.dir/cvector.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cvector.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cvector.h:19, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cvector.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [222/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/colortab.cpp.o -MF utils/CMakeFiles/utils.dir/colortab.cpp.o.d -o utils/CMakeFiles/utils.dir/colortab.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/colortab.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/colortab.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [226/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/evschutils.cpp.o -MF utils/CMakeFiles/utils.dir/evschutils.cpp.o.d -o utils/CMakeFiles/utils.dir/evschutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/evschutils.cpp [229/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cma.cpp.o -MF utils/CMakeFiles/utils.dir/cma.cpp.o.d -o utils/CMakeFiles/utils.dir/cma.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gtm.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp: In function ‘MRI* MRIaqueductSeg(MRI*, MRI*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:2311:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2311 | for(int n=0; n < aqcrs.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:2312:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2312 | for(int m=0; m < v3crs.size(); m++){ | ~~^~~~~~~~~~~~~~ [230/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fio.cpp.o -MF utils/CMakeFiles/utils.dir/fio.cpp.o.d -o utils/CMakeFiles/utils.dir/fio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In function ‘int makelocallink(char*, char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1005:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1005 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1030:8: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1030 | chdir(cwd); | ~~~~~^~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In member function ‘int TSV::read(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1047:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1047 | fgets(line,5000,fp); | ~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In function ‘fio_dirname(char const*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:636:26: warning: pointer ‘pname_27’ may be used after ‘free’ [-Wuse-after-free] 636 | if (l == 0 || pname[0] == '/') | ~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:634:9: note: call to ‘free’ here 634 | free(pname); | ~~~~^~~~~~~ [231/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/flash.cpp.o -MF utils/CMakeFiles/utils.dir/flash.cpp.o.d -o utils/CMakeFiles/utils.dir/flash.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/flash.cpp [232/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/filter.cpp.o -MF utils/CMakeFiles/utils.dir/filter.cpp.o.d -o utils/CMakeFiles/utils.dir/filter.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/filter.cpp [233/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dti.cpp.o -MF utils/CMakeFiles/utils.dir/dti.cpp.o.d -o utils/CMakeFiles/utils.dir/dti.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp: In function ‘MATRIX* DTIloadBVectors(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:907:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 907 | fscanf(fp,"%lf %lf %lf",&gx,&gy,&gz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:912:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 912 | fscanf(fp,"%lf %lf %lf",&gx,&gy,&gz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:918:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 918 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][1])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:920:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 920 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][2])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:922:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 922 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][3])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [234/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_cost_function.cpp.o -MF utils/CMakeFiles/utils.dir/fs_cost_function.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_cost_function.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_cost_function.cpp [235/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dtk.fs.cpp.o -MF utils/CMakeFiles/utils.dir/dtk.fs.cpp.o.d -o utils/CMakeFiles/utils.dir/dtk.fs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dtk.fs.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/dtk.fs.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [236/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_powell.cpp.o -MF utils/CMakeFiles/utils.dir/fs_powell.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_powell.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fs_powell.cpp [240/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsenv.cpp.o -MF utils/CMakeFiles/utils.dir/fsenv.cpp.o.d -o utils/CMakeFiles/utils.dir/fsenv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsenv.cpp [241/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fscnpy.cpp.o -MF utils/CMakeFiles/utils.dir/fscnpy.cpp.o.d -o utils/CMakeFiles/utils.dir/fscnpy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp: In member function ‘void fscnpy::__parse_header_dictionary(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 330 | for (int i = 0; i < __shape.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:356:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 356 | for (int n = 0; n < __shape.size(); n++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:219:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 219 | fread(magic_string, 1, __magic_string_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:228:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fread(&__major_version, 1, 1, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:229:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fread(&__minor_version, 1, 1, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:234:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread(&__header_len, 1, __header_len_bytes[__major_version-1], __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:238:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fread(dict, 1, __header_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:245:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fread(restheader, 1, restheader_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [242/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsinit.cpp.o -MF utils/CMakeFiles/utils.dir/fsinit.cpp.o.d -o utils/CMakeFiles/utils.dir/fsinit.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsinit.cpp [243/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o -MF utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o.d -o utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsPrintHelp.cpp [244/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/DICOMRead.cpp.o -MF utils/CMakeFiles/utils.dir/DICOMRead.cpp.o.d -o utils/CMakeFiles/utils.dir/DICOMRead.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp: In function ‘int DumpSiemensAsciiAlt(const char*, FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:2824:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2824 | for(nthchar=0; nthchar < strlen(tmpstr); nthchar++){ | ~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:19: In function ‘sprintf’, inlined from ‘DICOMRead3(char const*, bool, std::vector >, std::allocator > > >**)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:6123:12: /usr/include/bits/stdio2.h:30:34: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘prephitmp_160’ [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [245/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fcd.cpp.o -MF utils/CMakeFiles/utils.dir/fcd.cpp.o.d -o utils/CMakeFiles/utils.dir/fcd.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fcd.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fcd.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fcd.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [246/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fstagsio.cpp.o -MF utils/CMakeFiles/utils.dir/fstagsio.cpp.o.d -o utils/CMakeFiles/utils.dir/fstagsio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fstagsio.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fstagsio.cpp:8: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [247/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fmriutils.cpp.o -MF utils/CMakeFiles/utils.dir/fmriutils.cpp.o.d -o utils/CMakeFiles/utils.dir/fmriutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp: In function ‘MRI* MRIframeMean(MRI*, MRI*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:1687:49: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1687 | if(FrameWeight.size()!=0 && FrameWeight.size()!=vol->nframes){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp: In function ‘MRI* fMRIextractFrames(MRI*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:2418:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2418 | for(int n=0; n < framelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:2435:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2435 | for(int n=0; n < framelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ [248/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsglm.cpp.o -MF utils/CMakeFiles/utils.dir/fsglm.cpp.o.d -o utils/CMakeFiles/utils.dir/fsglm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsglm.cpp [249/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o -MF utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o.d -o utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearprior.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcalinearprior.hpp:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearprior.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [250/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsgdf.cpp.o -MF utils/CMakeFiles/utils.dir/fsgdf.cpp.o.d -o utils/CMakeFiles/utils.dir/fsgdf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:68: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘FSGD* gdfRead(const char*, const char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:291:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 291 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:299:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | fscanf(fp,"%d",&version); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘FSGD* gdfReadV1(const char*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:428:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 428 | fscanf(fp,"%s",tag); | ~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:436:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 436 | fscanf(fp,"%d",&version); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:535:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 535 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:560:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:581:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 581 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:611:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 611 | fscanf(fp,"%s",gd->varlabel[m]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:633:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 633 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:635:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 635 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:637:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 637 | fscanf(fp,"%d %d",&gd->fieldcol[m],&gd->datacol[m]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:644:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 644 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:687:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 687 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:715:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 715 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘int gdfCountItemsOnLine(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:961:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 961 | fgets(tmpstr,10000,fp); | ~~~~~^~~~~~~~~~~~~~~~~ [251/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o -MF utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o.d -o utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearnode.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcalinearnode.hpp:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcalinearnode.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [252/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcaboundary.cpp.o -MF utils/CMakeFiles/utils.dir/gcaboundary.cpp.o.d -o utils/CMakeFiles/utils.dir/gcaboundary.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcaboundary.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcaboundary.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcaboundary.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [253/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gclass.cpp.o -MF utils/CMakeFiles/utils.dir/gclass.cpp.o.d -o utils/CMakeFiles/utils.dir/gclass.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gclass.cpp [254/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/getdelim.cpp.o -MF utils/CMakeFiles/utils.dir/getdelim.cpp.o.d -o utils/CMakeFiles/utils.dir/getdelim.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/getdelim.cpp [255/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/getline.cpp.o -MF utils/CMakeFiles/utils.dir/getline.cpp.o.d -o utils/CMakeFiles/utils.dir/getline.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/getline.cpp [256/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o -MF utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamcomputeLabelsLinearCPU.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamcomputeLabelsLinearCPU.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [257/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcautils.cpp.o -MF utils/CMakeFiles/utils.dir/gcautils.cpp.o.d -o utils/CMakeFiles/utils.dir/gcautils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcautils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcautils.hpp:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcautils.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [258/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/geos.cpp.o -MF utils/CMakeFiles/utils.dir/geos.cpp.o.d -o utils/CMakeFiles/utils.dir/geos.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/geos.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/geos.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/geos.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [259/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gw_utils.cpp.o -MF utils/CMakeFiles/utils.dir/gw_utils.cpp.o.d -o utils/CMakeFiles/utils.dir/gw_utils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_utils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gw_utils.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_utils.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [260/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcsa.cpp.o -MF utils/CMakeFiles/utils.dir/gcsa.cpp.o.d -o utils/CMakeFiles/utils.dir/gcsa.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [261/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o -MF utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o.d -o utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_ic2562.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gw_ic2562.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [262/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gifti.cpp.o -MF utils/CMakeFiles/utils.dir/gifti.cpp.o.d -o utils/CMakeFiles/utils.dir/gifti.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gifti.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gifti.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gifti.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [263/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/hips.cpp.o -MF utils/CMakeFiles/utils.dir/hips.cpp.o.d -o utils/CMakeFiles/utils.dir/hips.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/hips.cpp [264/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o -MF utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorphtestutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorphtestutils.hpp:34, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorphtestutils.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [265/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gtm.cpp.o -MF utils/CMakeFiles/utils.dir/gtm.cpp.o.d -o utils/CMakeFiles/utils.dir/gtm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gtm.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp: In function ‘int MRIgtmSeg(GTMSEG*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 111 | for(int n=0; n < gtmseg->mergesegids.size(); n++) printf("%d ",gtmseg->mergesegids[n]); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:120:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int n=0; n < gtmseg->mergesegids.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [266/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/histo.cpp.o -MF utils/CMakeFiles/utils.dir/histo.cpp.o.d -o utils/CMakeFiles/utils.dir/histo.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/histo.cpp [267/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/hippo.cpp.o -MF utils/CMakeFiles/utils.dir/hippo.cpp.o.d -o utils/CMakeFiles/utils.dir/hippo.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/hippo.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/hippo.cpp:5: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [268/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic12.cpp.o -MF utils/CMakeFiles/utils.dir/ic12.cpp.o.d -o utils/CMakeFiles/utils.dir/ic12.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic12.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic12.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [269/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic163842.cpp.o -MF utils/CMakeFiles/utils.dir/ic163842.cpp.o.d -o utils/CMakeFiles/utils.dir/ic163842.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic163842.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic163842.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [270/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic42.cpp.o -MF utils/CMakeFiles/utils.dir/ic42.cpp.o.d -o utils/CMakeFiles/utils.dir/ic42.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic42.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic42.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [271/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic2562.cpp.o -MF utils/CMakeFiles/utils.dir/ic2562.cpp.o.d -o utils/CMakeFiles/utils.dir/ic2562.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic2562.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic2562.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [272/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/intensity_eig.cpp.o -MF utils/CMakeFiles/utils.dir/intensity_eig.cpp.o.d -o utils/CMakeFiles/utils.dir/intensity_eig.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/intensity_eig.cpp [273/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects 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-DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto 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-DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem 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-DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic642.cpp.o -MF utils/CMakeFiles/utils.dir/ic642.cpp.o.d -o utils/CMakeFiles/utils.dir/ic642.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic642.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ic642.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [277/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO 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-DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem 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-DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/icosahedron.cpp.o -MF utils/CMakeFiles/utils.dir/icosahedron.cpp.o.d -o utils/CMakeFiles/utils.dir/icosahedron.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/icosahedron.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/icosahedron.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [282/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_conform.cpp.o -MF utils/CMakeFiles/utils.dir/mri_conform.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_conform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_conform.cpp [292/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mideface.cpp.o -MF utils/CMakeFiles/utils.dir/mideface.cpp.o.d -o utils/CMakeFiles/utils.dir/mideface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp: In member function ‘MRI* MiDeface::EmbedCode(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 585 | for(int n=0; n < strlen(embedded_code); n++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:588:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 588 | for(int n=0; n < strlen(version); n++) | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp: In member function ‘int MiDeface::EmbedCodeCheck(const MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:610:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for(int n=0; n < strlen(embedded_code); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ [293/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/matrix.cpp.o -MF utils/CMakeFiles/utils.dir/matrix.cpp.o.d -o utils/CMakeFiles/utils.dir/matrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/matrix.cpp [294/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamorph.cpp.o -MF utils/CMakeFiles/utils.dir/gcamorph.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamorph.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorph.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcamorph.cpp:48: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [295/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gca.cpp.o -MF utils/CMakeFiles/utils.dir/gca.cpp.o.d -o utils/CMakeFiles/utils.dir/gca.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp: In function ‘GCA_SAMPLE* GCAfindStableSamples(GCA*, int*, int, float, int*, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:30: warning: comparison between two arrays [-Warray-compare] 4960 | if (((means[0] <= min_unknown) || (means[0] >= max_unknown))) /* disabled check */ | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:30: note: use unary ‘+’ which decays operands to pointers or ‘&(means[0])[0] <= &min_unknown[0]’ to compare the addresses /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:59: warning: comparison between two arrays [-Warray-compare] 4960 | if (((means[0] <= min_unknown) || (means[0] >= max_unknown))) /* disabled check */ | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:59: note: use unary ‘+’ which decays operands to pointers or ‘&(means[0])[0] >= &max_unknown[0]’ to compare the addresses In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [296/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/label.cpp.o -MF utils/CMakeFiles/utils.dir/label.cpp.o.d -o utils/CMakeFiles/utils.dir/label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/label.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [297/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_level_set.cpp.o -MF utils/CMakeFiles/utils.dir/mri_level_set.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_level_set.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_level_set.cpp [298/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_identify.cpp.o -MF utils/CMakeFiles/utils.dir/mri_identify.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_identify.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_identify.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_identify.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [299/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o -MF utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_fastmarching.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_fastmarching.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:24: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [300/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriBSpline.cpp.o -MF utils/CMakeFiles/utils.dir/mriBSpline.cpp.o.d -o utils/CMakeFiles/utils.dir/mriBSpline.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriBSpline.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriBSpline.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [301/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriclass.cpp.o -MF utils/CMakeFiles/utils.dir/mriclass.cpp.o.d -o utils/CMakeFiles/utils.dir/mriclass.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriclass.cpp [302/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_tess.cpp.o -MF utils/CMakeFiles/utils.dir/mri_tess.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_tess.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_tess.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_tess.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [303/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri2.cpp.o -MF utils/CMakeFiles/utils.dir/mri2.cpp.o.d -o utils/CMakeFiles/utils.dir/mri2.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIrescaleBySeg(MRI*, MRI*, std::vector, double, MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:275:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | for(int n=0; n < ids.size(); n++){ | ~~^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRImax(MRI*, MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1821:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1821 | for (unsigned int f = 0; f < frames; f++) { | ~~^~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1822:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1822 | for (unsigned int c = 0; c < cols; c++) { | ~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1823:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1823 | for (unsigned int r = 0; r < rows; r++) { | ~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1824:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1824 | for (unsigned int s = 0; s < slices; s++) { | ~~^~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIvolTopoFix(MRI*, int, MRI*, int, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:5838:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5838 | for(int k=1; k < crs.size(); k++) | ~~^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int BinarizeMRI::dump(MRI*, const MRI*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:6627:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6627 | for(int n=0; n < matchlist.size(); n++) fprintf(m_debugfp,"%d ",matchlist[n]); | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int BinarizeMRI::qualifies(const MRI*, const MRI*, int, int, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:6679:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6679 | for(int n=0; n < matchlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRItpfpfnSeg(MRI*, MRI*, std::vector, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7568 | for(int n=0; n < segids.size(); n++) printf("%d ",segids[n]); | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIcropAroundCRS(MRI*, double*, int*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7662:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7662 | for(int n=0; n < iKeep.size(); n++) printf("%d ",iKeep[n]); | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7734:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7734 | for(int n=0; n < iKeep.size(); n++) if(val == iKeep[n]) hit = 1; | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int SpatialCor::read(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8032:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8032 | fscanf(fp,"%*s %d",&this->nmask); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8033:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8033 | fscanf(fp,"%*s %lf",&this->xsum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8034:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8034 | fscanf(fp,"%*s %lf",&this->x2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8035:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8035 | fscanf(fp,"%*s %lf",&this->dx2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8036:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8036 | fscanf(fp,"%*s %lf",&this->xmn); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8037:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8037 | fscanf(fp,"%*s %lf",&this->ysum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8038:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8038 | fscanf(fp,"%*s %lf",&this->y2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8039:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8039 | fscanf(fp,"%*s %lf",&this->dy2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8040:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8040 | fscanf(fp,"%*s %lf",&this->ymn); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8041:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8041 | fscanf(fp,"%*s %lf",&this->xysum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8042:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8042 | fscanf(fp,"%*s %lf",&this->num); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8043:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8043 | fscanf(fp,"%*s %lf",&this->den); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8044:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8044 | fscanf(fp,"%*s %lf",&this->pcc); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [304/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mricurv.cpp.o -MF utils/CMakeFiles/utils.dir/mricurv.cpp.o.d -o utils/CMakeFiles/utils.dir/mricurv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mricurv.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri_topology.h:17, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mricurv.h:17, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mricurv.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [305/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRIio_old.cpp.o -MF utils/CMakeFiles/utils.dir/MRIio_old.cpp.o.d -o utils/CMakeFiles/utils.dir/MRIio_old.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRIio_old.cpp [306/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrihisto.cpp.o -MF utils/CMakeFiles/utils.dir/mrihisto.cpp.o.d -o utils/CMakeFiles/utils.dir/mrihisto.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp: In function ‘MRIhistoEqualizeRegion(MRI*, MRI*, int, MRI_REGION*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:461:28: warning: dangling pointer ‘region_2’ to ‘tmp’ may be used [-Wdangling-pointer=] 461 | MRIgetEqualizeHistoRegion(mri_src, histo_eq, low, region, 1); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:453:16: note: ‘tmp’ declared here 453 | MRI_REGION tmp; | ^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:462:38: warning: dangling pointer ‘region_2’ to ‘tmp’ may be used [-Wdangling-pointer=] 462 | mri_dst = MRIapplyHistogramToRegion(mri_src, mri_dst, histo_eq, region); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:453:16: note: ‘tmp’ declared here 453 | MRI_REGION tmp; | ^~~ [307/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_topology.cpp.o -MF utils/CMakeFiles/utils.dir/mri_topology.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri_topology.h:17, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [308/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriflood.cpp.o -MF utils/CMakeFiles/utils.dir/mriflood.cpp.o.d -o utils/CMakeFiles/utils.dir/mriflood.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriflood.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriflood.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [309/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriprob.cpp.o -MF utils/CMakeFiles/utils.dir/mriprob.cpp.o.d -o utils/CMakeFiles/utils.dir/mriprob.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriprob.cpp [310/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrinorm.cpp.o -MF utils/CMakeFiles/utils.dir/mrinorm.cpp.o.d -o utils/CMakeFiles/utils.dir/mrinorm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrinorm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/ctrpoints.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrinorm.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [311/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o -MF utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_compVolFrac.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mris_compVolFrac.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_compVolFrac.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [312/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrifilter.cpp.o -MF utils/CMakeFiles/utils.dir/mrifilter.cpp.o.d -o utils/CMakeFiles/utils.dir/mrifilter.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrifilter.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrifilter.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [313/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisegment.cpp.o -MF utils/CMakeFiles/utils.dir/mrisegment.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisegment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisegment.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisegment.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [314/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mripolv.cpp.o -MF utils/CMakeFiles/utils.dir/mripolv.cpp.o.d -o utils/CMakeFiles/utils.dir/mripolv.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mripolv.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mripolv.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [315/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o -MF utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_fastmarching.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_fastmarching.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/vector:70, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:24: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [316/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrimorph.cpp.o -MF utils/CMakeFiles/utils.dir/mrimorph.cpp.o.d -o utils/CMakeFiles/utils.dir/mrimorph.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrimorph.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrimorph.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [317/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o -MF utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o.d -o utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/MRISrigidBodyAlignGlobal.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp: In function ‘MRISrigidBodyAlignGlobal_findMinSSE(double*, double*, double*, double*, MRIS*, INTEGRATION_PARMS*, float, float, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:530:52: warning: array subscript 1 is above array bounds of ‘struct Center[1]’ [-Warray-bounds=] 530 | if (outCenters[oci].center_sse > outCenters[i].center_sse) oci = i; | ~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:154:11: note: while referencing ‘outCenters’ 154 | Centers outCenters; | ^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:475:62: warning: array subscript 1 is above array bounds of ‘struct Center[1]’ [-Warray-bounds=] 475 | if (outCenters[oci].center_sse < outCenters[i].center_sse) oci = i; | ~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:154:11: note: while referencing ‘outCenters’ 154 | Centers outCenters; | ^~~~~~~~~~ [318/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri.cpp.o -MF utils/CMakeFiles/utils.dir/mri.cpp.o.d -o utils/CMakeFiles/utils.dir/mri.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/timer.h:4, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/romp_support.h:47, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:32: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp: In member function ‘void MRI::loadITKImage(itk::Image::Pointer, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:15: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:41: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:68: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [319/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o -MF utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_sphshapepvf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mris_sphshapepvf.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mris_sphshapepvf.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [320/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriset.cpp.o -MF utils/CMakeFiles/utils.dir/mriset.cpp.o.d -o utils/CMakeFiles/utils.dir/mriset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp: In function ‘MRI* MRIerodeAndReplaceLabel(MRI*, int, int, int, int, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:720:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 720 | for(int n = 0; n < edgecrs.size(); n++){ | ~~^~~~~~~~~~~~~~~~ [321/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriio.cpp.o -MF utils/CMakeFiles/utils.dir/mriio.cpp.o.d -o utils/CMakeFiles/utils.dir/mriio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/autoencoder.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:51: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/error.h:6, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrishash.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:54: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp: In function ‘ReadAnalyzeHeader(char const*, int*, int*, int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:4934:28: warning: pointer ‘hdr_25’ used after ‘free’ [-Wuse-after-free] 4934 | hdr->dime.datatype)); | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:4928:9: note: call to ‘free’ here 4928 | free(hdr); | ~~~~^~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp: In function ‘MRIwrite(MRI*, char const*, std::vector >*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:1353:30: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1353 | sprintf(tmp, "%s%s.%s", fname_copy, ((*mriVector)[n])->fnamePostFixes, ext); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:27: In function ‘sprintf’, inlined from ‘MRIwrite(MRI*, char const*, std::vector >*, int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:1353:16: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [322/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrishash.cpp.o -MF utils/CMakeFiles/utils.dir/mrishash.cpp.o.d -o utils/CMakeFiles/utils.dir/mrishash.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrishash.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrishash.cpp:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [323/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o -MF utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o.d -o utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:8: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp: In member function ‘void GradUnwarp::printCoeff()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:334:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 334 | for (; i < strlen(arrs); i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp: In member function ‘void GradUnwarp::read_siemens_coeff(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:106:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:112:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 112 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:121:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 121 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:130:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:137:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 137 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [324/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisp.cpp.o -MF utils/CMakeFiles/utils.dir/mrisp.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisp.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [325/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_base.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:61, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_base.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:60: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [326/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:61, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:60: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [327/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_compute_dxyz.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_compute_dxyz.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_compute_dxyz.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [328/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io_stl.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io_stl.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [329/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.cpp:18: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [330/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [331/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.h:3, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int mrisReadGeoFilePositions(MRI_SURFACE*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3506:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3506 | fscanf(fp, "%e %e %e", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3509:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3509 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int mrisReadTriangleFilePositions(MRI_SURFACE*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5452:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5452 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5453:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5453 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* MRISreadVTK(MRI_SURFACE*, const char*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:2961:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2961 | fscanf(fp, "%f %f %f", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3017:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3017 | fscanf(fp, "%d ", &facepoints); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3025:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3025 | fscanf(fp, "%d", &vno); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRIS* MRISreadOverAlloc_old(const char*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:4052:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4052 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadAsciiFile(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3361:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3361 | fscanf(fp, "%f %f %f %d\n", &x, &y, &z, &rip); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3372:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3372 | fscanf(fp, "%d ", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3383:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3383 | fscanf(fp, "%d\n", &rip); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadGeoFile(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3436:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3436 | fscanf(fp, "%e %e %e", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3439:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3439 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3446:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3446 | fscanf(fp, "%d ", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3454:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3454 | fscanf(fp, "-%d\n", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadTriangleFile(const char*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5510:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5510 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5511:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5511 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5599:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5599 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRIS* __MRISreadQuadrangleFile(const char*, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:6474:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6474 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘SMALL_SURFACE* mrisReadTriangleFileVertexPositionsOnly(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5399 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5400:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5400 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int MRISreadDecimation(MRI_SURFACE*, char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5746:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5746 | fscanf(fptr, "%*s"); | ~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5747:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5747 | fscanf(fptr, "%d", &d); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5751:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5751 | fscanf(fptr, "%d", &d); | ~~~~~~^~~~~~~~~~~~~~~~ [332/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties_faster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties_faster.cpp:3: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [333/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_project.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_project.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_project.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [334/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sphere_interp.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_sphere_interp.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sphere_interp.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [335/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [336/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [337/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp: In function ‘int MRISfindNeighborsAtVertex_new(MRIS*, int, int, size_t, int*, int*, bool)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:1405:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1405 | if (neighborCount > listCapacity) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp: In function ‘int MRISisNextSpatOrderedNeighbor(MRIS*, int, int, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:3399:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3399 | for(int n=0; n < vnolist.size(); n++) if(vnotest == vnolist[n]) return(0); | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/const.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:24: In member function ‘FixedSizeArray::operator[](unsigned long)’, inlined from ‘MRISgetSpatOrderedNeighbors(MRIS*, int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:3369:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h:145:55: warning: array subscript 4 is above array bounds of ‘int[3]’ [-Warray-bounds=] 145 | T& operator[](size_t i) { return v[i]; } | ~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h: In function ‘MRISgetSpatOrderedNeighbors(MRIS*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/base.h:155:7: note: while referencing ‘v’ 155 | T v[SIZE]; | ^ [338/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_sseTerms.h:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp: In function ‘double MRISpointSetLocationError(MRIS*, double, json*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp:1939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1939 | for(int i = 0; i < PointSet["points"].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [339/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp: In member function ‘int AutoDetGWStats::ReadStream(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8057:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8057 | fscanf(fp,"%*s %d",&hemicode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8058:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8058 | fscanf(fp,"%*s %lf",&white_border_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8059:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8059 | fscanf(fp,"%*s %lf",&white_border_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8060:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8060 | fscanf(fp,"%*s %lf",&white_outside_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8061:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8061 | fscanf(fp,"%*s %lf",&white_inside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8062:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8062 | fscanf(fp,"%*s %lf",&white_outside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8063:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8063 | fscanf(fp,"%*s %lf",&pial_border_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8064:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8064 | fscanf(fp,"%*s %lf",&pial_border_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8065:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8065 | fscanf(fp,"%*s %lf",&pial_outside_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8066:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8066 | fscanf(fp,"%*s %lf",&pial_inside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8067:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8067 | fscanf(fp,"%*s %lf",&pial_outside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8068:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8068 | fscanf(fp,"%*s %d\n",&use_mode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8069:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8069 | fscanf(fp,"%*s %f",&variablesigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8070:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8070 | fscanf(fp,"%*s %lf",&std_scale); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8071:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8071 | fscanf(fp,"%*s %f",&adWHITE_MATTER_MEAN); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8072:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8072 | fscanf(fp,"%*s %f",&MAX_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8073:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8073 | fscanf(fp,"%*s %f",&MIN_BORDER_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8074:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8074 | fscanf(fp,"%*s %f",&MAX_BORDER_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8075:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8075 | fscanf(fp,"%*s %f",&MAX_GRAY); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8076:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8076 | fscanf(fp,"%*s %f",&MID_GRAY); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8077:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8077 | fscanf(fp,"%*s %f",&MIN_GRAY_AT_CSF_BORDER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8078:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8078 | fscanf(fp,"%*s %f",&MAX_GRAY_AT_CSF_BORDER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8079:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8079 | fscanf(fp,"%*s %f",&MIN_CSF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8080:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8080 | fscanf(fp,"%*s %f",&adMAX_CSF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8081:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8081 | fscanf(fp,"%*s %f",&white_mean); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8082:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8082 | fscanf(fp,"%*s %f",&white_mode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8083:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8083 | fscanf(fp,"%*s %f",&white_std); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8084:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8084 | fscanf(fp,"%*s %f",&gray_mean); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8085:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8085 | fscanf(fp,"%*s %f",&gray_mode ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8086:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8086 | fscanf(fp,"%*s %f",&gray_std); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8087:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8087 | fscanf(fp,"%*s %f",&min_border_white); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8088:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8088 | fscanf(fp,"%*s %f",&max_border_white); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8089:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8089 | fscanf(fp,"%*s %f",&min_gray_at_white_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8090:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8090 | fscanf(fp,"%*s %f",&max_gray); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8091:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8091 | fscanf(fp,"%*s %f",&min_gray_at_csf_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8092:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8092 | fscanf(fp,"%*s %f",&max_gray_at_csf_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8093:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8093 | fscanf(fp,"%*s %f",&min_csf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8094:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8094 | fscanf(fp,"%*s %f",&max_csf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8095:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8095 | fscanf(fp,"%*s %lf",&max_gray_scale); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8096:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8096 | fscanf(fp,"%*s %lf",&max_scale_down); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [340/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_vals.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_vals.cpp:19: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [341/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o -MF utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o.d -o utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISurfOverlay.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/MRISurfOverlay.h:5, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/MRISurfOverlay.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [342/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriTransform.cpp.o -MF utils/CMakeFiles/utils.dir/mriTransform.cpp.o.d -o utils/CMakeFiles/utils.dir/mriTransform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriTransform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriTransform.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [343/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisutils.cpp.o -MF utils/CMakeFiles/utils.dir/mrisutils.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRIS* MRISaverageSurfaces(std::vector, MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:4182:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4182 | for(int n=1; n < surfs.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRIS* MRISupsampleSplit(MRIS*, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:3872:10: warning: ignoring return value of ‘int mkstemp(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3872 | mkstemp(tmpfile); | ~~~~~~~^~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRISfindPath(int*, int, int, int*, int*, MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1881:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1881 | check[closest_vno] = FALSE; /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1841:25: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ 1841 | check = (char *)calloc(mris->nvertices, sizeof(char)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [344/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pgmstubs.cpp.o -MF utils/CMakeFiles/utils.dir/pgmstubs.cpp.o.d -o utils/CMakeFiles/utils.dir/pgmstubs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pgmstubs.cpp [345/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrivoxel.cpp.o -MF 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/prime.cpp.o -MF utils/CMakeFiles/utils.dir/prime.cpp.o.d -o utils/CMakeFiles/utils.dir/prime.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/prime.cpp [350/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp:17: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [351/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/offset.cpp.o -MF utils/CMakeFiles/utils.dir/offset.cpp.o.d -o utils/CMakeFiles/utils.dir/offset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/offset.cpp [352/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/path.cpp.o -MF utils/CMakeFiles/utils.dir/path.cpp.o.d -o utils/CMakeFiles/utils.dir/path.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/path.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:23: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp: In function ‘PathReadMany(char*, int*, PATH***)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:165:29: warning: pointer ‘path_171’ may be used after ‘free’ [-Wuse-after-free] 165 | if (path) free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:163:19: note: call to ‘free’ here 163 | free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:183:29: warning: pointer ‘path_171’ may be used after ‘free’ [-Wuse-after-free] 183 | if (path) free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:181:19: note: call to ‘free’ here 181 | free(path); | ~~~~^~~~~~ [353/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rbf.cpp.o -MF utils/CMakeFiles/utils.dir/rbf.cpp.o.d -o utils/CMakeFiles/utils.dir/rbf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rbf.cpp [354/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/warpfield.cpp.o -MF utils/CMakeFiles/utils.dir/warpfield.cpp.o.d -o utils/CMakeFiles/utils.dir/warpfield.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/warpfield.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/warpfield.cpp:6: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [355/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/region.cpp.o -MF utils/CMakeFiles/utils.dir/region.cpp.o.d -o utils/CMakeFiles/utils.dir/region.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/region.cpp [356/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/randomfields.cpp.o -MF utils/CMakeFiles/utils.dir/randomfields.cpp.o.d -o utils/CMakeFiles/utils.dir/randomfields.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [357/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/realm.cpp.o -MF utils/CMakeFiles/utils.dir/realm.cpp.o.d -o utils/CMakeFiles/utils.dir/realm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/realm.h:54, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [358/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/registerio.cpp.o -MF utils/CMakeFiles/utils.dir/registerio.cpp.o.d -o utils/CMakeFiles/utils.dir/registerio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/registerio.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/registerio.cpp:15: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [359/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rbm.cpp.o -MF utils/CMakeFiles/utils.dir/rbm.cpp.o.d -o utils/CMakeFiles/utils.dir/rbm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rbm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/rbm.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rbm.cpp:24: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [360/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rforest.cpp.o -MF utils/CMakeFiles/utils.dir/rforest.cpp.o.d -o utils/CMakeFiles/utils.dir/rforest.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rforest.cpp [361/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rgb.cpp.o -MF utils/CMakeFiles/utils.dir/rgb.cpp.o.d -o utils/CMakeFiles/utils.dir/rgb.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rgb.cpp [362/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/retinotopy.cpp.o -MF utils/CMakeFiles/utils.dir/retinotopy.cpp.o.d -o utils/CMakeFiles/utils.dir/retinotopy.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [363/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/selxavgio.cpp.o -MF utils/CMakeFiles/utils.dir/selxavgio.cpp.o.d -o utils/CMakeFiles/utils.dir/selxavgio.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp: In function ‘SXADAT* ld_sxadat(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:142:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 142 | fscanf(fp, "%*s %f", &sxa->TR); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:143:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 143 | fscanf(fp, "%*s %f", &sxa->TimeWindow); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:144:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 144 | fscanf(fp, "%*s %f", &sxa->TPreStim); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:145:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fscanf(fp, "%*s %d", &sxa->Nc); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:146:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | fscanf(fp, "%*s %d", &sxa->Nh); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:153:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fscanf(fp, "%*s %f", &sxa->TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:154:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fscanf(fp, "%*s %f", &sxa->DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:156:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:158:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | for (n = 0; n < sxa->Nc; n++) fscanf(fp, "%d", &sxa->npercond[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:159:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 159 | fscanf(fp, "%*s %d", &sxa->nruns); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:160:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 160 | fscanf(fp, "%*s %d", &sxa->ntp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:161:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fscanf(fp, "%*s %d", &sxa->nrows); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:162:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fscanf(fp, "%*s %d", &sxa->ncols); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:163:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 163 | fscanf(fp, "%*s %d", &sxa->nskip); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:164:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fscanf(fp, "%*s %d", &sxa->DTOrder); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:165:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 165 | fscanf(fp, "%*s %f", &sxa->RescaleFactor); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:166:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 166 | fscanf(fp, "%*s %f", &sxa->HanningRadius); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:167:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | fscanf(fp, "%*s %d", &sxa->nNoiseAC); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:168:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | fscanf(fp, "%*s %d", &sxa->BrainAirSeg); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:169:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 169 | fscanf(fp, "%*s %d", &sxa->GammaFit); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:171:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:172:47: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 172 | for (n = 0; n < sxa->GammaFit; n++) fscanf(fp, "%f", &sxa->gfDelta[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:173:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 173 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:174:47: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | for (n = 0; n < sxa->GammaFit; n++) fscanf(fp, "%f", &sxa->gfTau[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:176:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fscanf(fp, "%*s %d", &sxa->NullCondId); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:180:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:185:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | fscanf(fp, "%f", &sxa->SumXtX[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:192:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 192 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:197:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 197 | fscanf(fp, "%f", &sxa->hCovMtx[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:202:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:204:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | for (n = 0; n < sxa->Nc; n++) fscanf(fp, "%d", &sxa->CondIdMap[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [364/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/romp_support.cpp.o -MF utils/CMakeFiles/utils.dir/romp_support.cpp.o.d -o utils/CMakeFiles/utils.dir/romp_support.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/romp_support.cpp [366/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/resample.cpp.o -MF utils/CMakeFiles/utils.dir/resample.cpp.o.d -o utils/CMakeFiles/utils.dir/resample.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/resample.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/resample.cpp:67: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [367/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rfa.cpp.o -MF utils/CMakeFiles/utils.dir/rfa.cpp.o.d -o utils/CMakeFiles/utils.dir/rfa.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfa.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfa.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [368/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/signa.cpp.o -MF utils/CMakeFiles/utils.dir/signa.cpp.o.d -o utils/CMakeFiles/utils.dir/signa.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp: In function ‘MRI* signaRead(char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp:300:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 300 | fread(&MRISseq_vox(mri, 0, 0, slice, frame), sizeof(short), mri->width * mri->height, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp:305:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 305 | fread(&MRISvox(mri, 0, 0, slice), sizeof(short), mri->width * mri->height, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [369/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rfutils.cpp.o -MF utils/CMakeFiles/utils.dir/rfutils.cpp.o.d -o utils/CMakeFiles/utils.dir/rfutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/rfutils.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [370/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/svm.cpp.o -MF utils/CMakeFiles/utils.dir/svm.cpp.o.d -o utils/CMakeFiles/utils.dir/svm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/svm.cpp [371/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pointset.cpp.o -MF utils/CMakeFiles/utils.dir/pointset.cpp.o.d -o utils/CMakeFiles/utils.dir/pointset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pointset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/pointset.cpp:10: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [372/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tags.cpp.o -MF utils/CMakeFiles/utils.dir/tags.cpp.o.d -o utils/CMakeFiles/utils.dir/tags.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp: In function ‘int TAGread(FILE*, void*, long long int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:77:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 77 | fread(buf, sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp: In function ‘MATRIX* TAGreadMatrix(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:186:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fscanf(fp, "%s", buf); // get past "AutoAlign"/"Matrix" string | ~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:189:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | fscanf(fp, "%f", &(M->rptr[r][c])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [373/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/timer.cpp.o -MF utils/CMakeFiles/utils.dir/timer.cpp.o.d -o utils/CMakeFiles/utils.dir/timer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/timer.cpp [374/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/talairachex.cpp.o -MF utils/CMakeFiles/utils.dir/talairachex.cpp.o.d -o utils/CMakeFiles/utils.dir/talairachex.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/talairachex.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/talairachex.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/talairachex.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/talairachex.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [375/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tukey.cpp.o -MF utils/CMakeFiles/utils.dir/tukey.cpp.o.d -o utils/CMakeFiles/utils.dir/tukey.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tukey.cpp [376/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tritri.cpp.o -MF utils/CMakeFiles/utils.dir/tritri.cpp.o.d -o utils/CMakeFiles/utils.dir/tritri.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tritri.cpp [377/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/surfcluster.cpp.o -MF utils/CMakeFiles/utils.dir/surfcluster.cpp.o.d -o utils/CMakeFiles/utils.dir/surfcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/resample.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [378/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tfce.cpp.o -MF utils/CMakeFiles/utils.dir/tfce.cpp.o.d -o utils/CMakeFiles/utils.dir/tfce.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/surfcluster.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp: In member function ‘MRI* TFCE::voxcor(MRI*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:53:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 53 | for(n=0; n < maxstatlist.size(); n++) if(v < maxstatlist[n]) break; | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:55:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 55 | if(n!=maxstatlist.size()){ | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp: In member function ‘int TFCE::write_vector_double(char*, std::vector)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:81:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 81 | for(int n=0; n TFCE::read_vector_double(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:101:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | fscanf(fp,"%lf",&v); | ~~~~~~^~~~~~~~~~~~~ [379/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/surfgrad.cpp.o -MF utils/CMakeFiles/utils.dir/surfgrad.cpp.o.d -o utils/CMakeFiles/utils.dir/surfgrad.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRISedgeLengthCost(MRIS*, double, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1523:19: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 1523 | tx[e->vtxno[0]] += gradv0->rptr[1][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:11: note: ‘tx’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1527:19: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 1527 | ty[e->vtxno[1]] += gradv1->rptr[2][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:15: note: ‘ty’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1528:19: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 1528 | tz[e->vtxno[1]] += gradv1->rptr[3][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:19: note: ‘tz’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRISedgeAngleCost(MRIS*, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1743:28: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 1743 | tx[e->vtxno[wrtvtxno]] += gradv->rptr[1][1]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:11: note: ‘tx’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1744:28: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 1744 | ty[e->vtxno[wrtvtxno]] += gradv->rptr[1][2]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:15: note: ‘ty’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1745:28: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 1745 | tz[e->vtxno[wrtvtxno]] += gradv->rptr[1][3]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:19: note: ‘tz’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRIScornerDotCost(MRIS*, double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2533:17: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 2533 | tx[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][1]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:11: note: ‘tx’ was declared here 2495 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2534:17: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 2534 | ty[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][2]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:15: note: ‘ty’ was declared here 2495 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2535:17: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 2535 | tz[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][3]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:19: note: ‘tz’ was declared here 2495 | double *tx,*ty,*tz; | ^~ [380/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/version.cpp.o -MF utils/CMakeFiles/utils.dir/version.cpp.o.d -o utils/CMakeFiles/utils.dir/version.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/version.cpp [381/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/vertexRotator.cpp.o -MF utils/CMakeFiles/utils.dir/vertexRotator.cpp.o.d -o utils/CMakeFiles/utils.dir/vertexRotator.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/vertexRotator.cpp [382/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/stats.cpp.o -MF utils/CMakeFiles/utils.dir/stats.cpp.o.d -o utils/CMakeFiles/utils.dir/stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘STAT_TABLE* LoadStatTableFS(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:70:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | fgets(tmpstr, 100000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:91:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:96:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:106:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘STAT_TABLE* InitStatTableFromMRI(MRI*, const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:371:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fgets(tmpstr, 100000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:396:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 396 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:401:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 401 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:407:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:409:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fgets(tmpstr, 100000, fp); // skip till end of line | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘SV* StatReadVolume(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:508:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fscanf(fp, "%*s %f", &TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:509:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 509 | fscanf(fp, "%*s %d", &DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:579:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 579 | fscanf(fp, "%d %d %d", &width, &height, &nframes); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:605:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 605 | fscanf(fp, "%d %d %d", &width, &height, &nframes); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘SV* StatReadVolume2(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:772:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 772 | fscanf(fp, "%*s %f", &TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:773:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 773 | fscanf(fp, "%*s %d", &DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [383/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp:8: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp: In static member function ‘static MRI* VentFix::ExpandSegIndices(MRI*, int, MRI*, int, int, int, int*, fsPointSet&, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp:164:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 164 | for(int n=0; n < idx.size(); n++){ | ~~^~~~~~~~~~~~ [440/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/svm -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -DNDEBUG -std=c++17 -w -fPIC -std=gnu89 -MD -MT packages/svm/CMakeFiles/svm.dir/svm-sketch.cpp.o -MF packages/svm/CMakeFiles/svm.dir/svm-sketch.cpp.o.d -o packages/svm/CMakeFiles/svm.dir/svm-sketch.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/svm/svm-sketch.cpp [449/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/transform.cpp.o -MF utils/CMakeFiles/utils.dir/transform.cpp.o.d -o utils/CMakeFiles/utils.dir/transform.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In function ‘double* SegRegCost(MRI*, MRI*, double*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4692:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4692 | for (unsigned int c = 0; c < f->width; c++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4693:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4693 | for (unsigned int r = 0; r < f->height; r++) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4694:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4694 | for (unsigned int s = 0; s < f->depth; s++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In member function ‘int RegLandmarks::WriteCoords(const char*, const LTA*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:5630:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5630 | for(int n=0; n < sxyz.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In member function ‘fsPointSet RegLandmarks::Coords2PointSet(const LTA*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:5649:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5649 | for(int n=0; n < sxyz.size(); n++){ | ~~^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In function ‘LTA* ltaReadFileEx(const char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:3138:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3138 | fscanf(fp, "mean = %f %f %f\n", <->x0, <->y0, <->z0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:3139:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3139 | fscanf(fp, "sigma = %f\n", <->sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [450/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/targetpointset.cpp.o -MF utils/CMakeFiles/utils.dir/targetpointset.cpp.o.d -o utils/CMakeFiles/utils.dir/targetpointset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::PruneByAngle()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::PruneByDistance()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:62:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 62 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::WriteAsPatch(const char*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:138:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for(int n=0; n < vtxlist.size(); n++) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘MRI* SurfacePointSet::MakeMask()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:166:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘double SurfacePointSet::CostAndGrad(double, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:183:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 183 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::Print(FILE*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:207:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 207 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘fsPointSet SurfacePointSet::VerticesToPointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:224:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 224 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘fsPointSet SurfacePointSet::ConvertToPointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:245:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::MapPointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:292:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 292 | for(int i = 0; i < PointSet["points"].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:334:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 334 | for(int n=0; n < m_shl.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 348 | for(int n=0; n < psvtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 354 | for(int k=0; k < psvtxlist.size(); k++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:387:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 387 | for(int n=psvtxlist.size(); n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:398:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for(int n=0; n < vtxlist.size(); n++) surf->vertices[vtxlist[n]].val = 0; | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:410:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 410 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:430:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 430 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In destructor ‘SurfacePointSet::~SurfacePointSet()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:462:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for(int n=0; n < m_shl.size(); n++) SurfHopListFree(&m_shl[n]); | ~~^~~~~~~~~~~~~~ [451/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/voxlist.cpp.o -MF utils/CMakeFiles/utils.dir/voxlist.cpp.o.d -o utils/CMakeFiles/utils.dir/voxlist.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [452/902] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkArrowPipeline.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkArrowPipeline.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkArrowPipeline.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkArrowPipeline.cxx [454/902] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkRGBATransferFunction.cxx [455/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_and/CMakeFiles/mri_and.dir/mri_and.cpp.o -MF mri_and/CMakeFiles/mri_and.dir/mri_and.cpp.o.d -o mri_and/CMakeFiles/mri_and.dir/mri_and.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_and/mri_and.cpp [456/902] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkInflatePolyData.cxx [457/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_and/CMakeFiles/mri_or.dir/mri_or.cpp.o -MF mri_and/CMakeFiles/mri_or.dir/mri_or.cpp.o.d -o mri_and/CMakeFiles/mri_or.dir/mri_or.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_and/mri_or.cpp [458/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/xml2 -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/volcluster.cpp.o -MF utils/CMakeFiles/utils.dir/volcluster.cpp.o.d -o utils/CMakeFiles/utils.dir/volcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::GrowOne(std::vector, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2351:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2351 | for(int n=0; n < nbrs.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::Clusterize()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2371:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2371 | if(pointno >= this->voxlist.size()) break; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2379 | if(pointno >= this->voxlist.size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::ClusterSummarize(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2408:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2408 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::PrintClusterSum(FILE*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2456:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2456 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::WritePointSet(char*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2468:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2468 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::SortClusters(MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2490:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2490 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::PruneClusters(double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2513:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2513 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::MaxClusterSize()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2546:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2546 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘std::vector SpatTempCluster::GetClusterSizes()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2556:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2556 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In function ‘CHT* CHTread(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1078:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1078 | fgets(tmpstr, 1000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1092:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1092 | fgets(tmpstr, 1000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1141:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1141 | fscanf(fp, "%lf ", &dummy); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1142:45: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1142 | for (v = 0; v < cht->n_sthr; v++) fscanf(fp, "%d ", &(cht->hits[i][v])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In function ‘CLUSTER_SIM_DATA* CSDread(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1320:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1320 | fscanf(fp, "%s", tag); | ~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1322:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1322 | fscanf(fp, "%s", csd->simtype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1324:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1324 | fscanf(fp, "%s", csd->anattype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1326:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1326 | fscanf(fp, "%s", csd->subject); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1327:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1327 | fscanf(fp, "%s", csd->hemi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1331:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1331 | fscanf(fp, "%lf", &(csd->thresh)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1333:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | fscanf(fp, "%lf", &(csd->threshsign)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1335:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1335 | fscanf(fp, "%ld", &(csd->seed)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1337:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1337 | fscanf(fp, "%s", csd->contrast); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1339:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1339 | fscanf(fp, "%lf", &csd->nullfwhm); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1341:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1341 | fscanf(fp, "%lf", &csd->varfwhm); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1343:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1343 | fscanf(fp, "%lf", &csd->searchspace); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1345:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1345 | fscanf(fp, "%d", &(nrepstmp)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1359:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1359 | fscanf(fp, "%d", &(csd->nreps)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1363:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1363 | fscanf(fp, "%d", &(csd->FixGroupSubjectArea)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1365:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1365 | fgets(tmpstr, 1000, fp); // not an interesting line, so get past it | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1370:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1370 | fscanf(fp, "%d", &(csd->nClusters[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1371:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1371 | fscanf(fp, "%lf", &(csd->MaxClusterSize[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1372:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1372 | fscanf(fp, "%lf", &(csd->MaxSig[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1378:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1378 | fscanf(fp, "%lf", &d); | ~~~~~~^~~~~~~~~~~~~~~ [459/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -MF mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o.d -o mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [460/902] : && /usr/bin/cmake -E rm -f utils/libutils.a && /usr/bin/ar qc utils/libutils.a utils/CMakeFiles/utils.dir/afni.cpp.o utils/CMakeFiles/utils.dir/annotation.cpp.o utils/CMakeFiles/utils.dir/argparse.cpp.o utils/CMakeFiles/utils.dir/autoencoder.cpp.o utils/CMakeFiles/utils.dir/bfileio.cpp.o utils/CMakeFiles/utils.dir/box.cpp.o utils/CMakeFiles/utils.dir/Bruker.cpp.o utils/CMakeFiles/utils.dir/chklc.cpp.o utils/CMakeFiles/utils.dir/class_array.cpp.o utils/CMakeFiles/utils.dir/cluster.cpp.o utils/CMakeFiles/utils.dir/cma.cpp.o 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utils/CMakeFiles/utils.dir/tags.cpp.o utils/CMakeFiles/utils.dir/talairachex.cpp.o utils/CMakeFiles/utils.dir/targetpointset.cpp.o utils/CMakeFiles/utils.dir/timer.cpp.o utils/CMakeFiles/utils.dir/transform.cpp.o utils/CMakeFiles/utils.dir/tritri.cpp.o utils/CMakeFiles/utils.dir/tukey.cpp.o utils/CMakeFiles/utils.dir/utils.cpp.o utils/CMakeFiles/utils.dir/ventfix.cpp.o utils/CMakeFiles/utils.dir/version.cpp.o utils/CMakeFiles/utils.dir/vertexRotator.cpp.o utils/CMakeFiles/utils.dir/vlabels.cpp.o utils/CMakeFiles/utils.dir/volcluster.cpp.o utils/CMakeFiles/utils.dir/voxlist.cpp.o utils/CMakeFiles/utils.dir/xDebug.cpp.o utils/CMakeFiles/utils.dir/xTypes.cpp.o utils/CMakeFiles/utils.dir/xVoxel.cpp.o && /usr/bin/ranlib utils/libutils.a && : [461/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsDenoiseImageFs && xxd -i AntsDenoiseImageFs.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs/AntsDenoiseImageFs.help.xml.h [462/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs && xxd -i AntsN4BiasFieldCorrectionFs.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.help.xml.h [463/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert && xxd -i lta_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert/lta_convert.help.xml.h [464/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/io && xxd -i fs_temp_file.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io/fs_temp_file.help.xml.h [465/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/io && xxd -i fs_temp_dir.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io/fs_temp_dir.help.xml.h [466/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_add_xform_to_header && xxd -i mri_add_xform_to_header.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header/mri_add_xform_to_header.help.xml.h [467/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg && xxd -i mri_aparc2aseg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg/mri_aparc2aseg.help.xml.h [468/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg && xxd -i mri_surf2volseg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg/mri_surf2volseg.help.xml.h [469/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label && xxd -i mri_ca_label.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label/mri_ca_label.help.xml.h [470/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize && xxd -i mri_ca_normalize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize/mri_ca_normalize.help.xml.h [471/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_register && xxd -i mri_ca_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register/mri_ca_register.help.xml.h [472/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc && xxd -i mri_cc.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc/mri_cc.help.xml.h [473/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap && xxd -i mri_compute_seg_overlap.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap/mri_compute_seg_overlap.help.xml.h [474/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert && xxd -i mri_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert/mri_convert.help.xml.h [475/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg && xxd -i mri_edit_wm_with_aseg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.help.xml.h [476/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register && xxd -i mri_em_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register/mri_em_register.help.xml.h [477/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill && xxd -i mri_fill.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill/mri_fill.help.xml.h [478/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations && xxd -i mri_fuse_segmentations.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations/mri_fuse_segmentations.help.xml.h [479/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gcut && xxd -i mri_gcut.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut/mri_gcut.help.xml.h [480/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mask && xxd -i mri_mask.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask/mri_mask.help.xml.h [481/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc && xxd -i mri_pretess.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc/mri_pretess.help.xml.h [482/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc && xxd -i mris_extract_main_component.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc/mris_extract_main_component.help.xml.h [483/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize && xxd -i mri_normalize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize/mri_normalize.help.xml.h [484/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize && xxd -i mri_long_normalize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize/mri_long_normalize.help.xml.h [485/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_refine_seg && xxd -i mri_refine_seg.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg/mri_refine_seg.help.xml.h [486/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_remove_neck && xxd -i mri_remove_neck.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck/mri_remove_neck.help.xml.h [487/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i mri_robust_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/mri_robust_register.help.xml.h [488/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i mri_robust_template.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/mri_robust_template.help.xml.h [489/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -MF mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o.d -o mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:84:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [490/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i lta_diff.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/lta_diff.help.xml.h [491/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap && xxd -i mri_seg_overlap.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap/mri_seg_overlap.help.xml.h [492/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segment && xxd -i mri_segment.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment/mri_segment.help.xml.h [493/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep && xxd -i mri_si_prep.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep/mri_si_prep.help.xml.h [494/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats && xxd -i mri_segstats.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats/mri_segstats.help.xml.h [495/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_tessellate && xxd -i mri_tessellate.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate/mri_tessellate.help.xml.h [496/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed && xxd -i mri_watershed.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed/mri_watershed.help.xml.h [497/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats && xxd -i mris_anatomical_stats.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats/mris_anatomical_stats.help.xml.h [498/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_diff && xxd -i mris_annot_diff.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff/mris_annot_diff.help.xml.h [499/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_label && xxd -i mris_ca_label.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label/mris_ca_label.help.xml.h [500/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc && xxd -i mris_calc.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc/mris_calc.help.xml.h [501/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_convert && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_convert && xxd -i mris_convert.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_convert/mris_convert.help.xml.h [502/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature && xxd -i mris_curvature.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature/mris_curvature.help.xml.h [503/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset && xxd -i mris_defects_pointset.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset/mris_defects_pointset.help.xml.h [504/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology && xxd -i mris_fix_topology.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology/mris_fix_topology.help.xml.h [505/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_euler_number && xxd -i mris_euler_number.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number/mris_euler_number.help.xml.h [506/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_inflate && xxd -i mris_inflate.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate/mris_inflate.help.xml.h [507/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology && xxd -i mris_remove_intersection.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology/mris_remove_intersection.help.xml.h [508/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_jacobian && xxd -i mris_jacobian.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian/mris_jacobian.help.xml.h [509/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mris_make_surfaces.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mris_make_surfaces.help.xml.h [510/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mris_place_surface.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mris_place_surface.help.xml.h [511/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mri_stopmask.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mri_stopmask.help.xml.h [512/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register && xxd -i mris_register.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register/mris_register.help.xml.h [513/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize && xxd -i mris_skeletonize.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize/mris_skeletonize.help.xml.h [514/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere && xxd -i mris_sphere.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere/mris_sphere.help.xml.h [515/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth && xxd -i mris_smooth.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth/mris_smooth.help.xml.h [516/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask && xxd -i mris_volmask.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask/mris_volmask.help.xml.h [517/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_paint && xxd -i mrisp_paint.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint/mrisp_paint.help.xml.h [518/902] cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd && cd /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd && xxd -i talairach_afd.help.xml /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd/talairach_afd.help.xml.h [519/902] /usr/bin/g++ -DGLAD_API_CALL_EXPORT -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkRGBAColorTransferFunction.cxx [520/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -MF mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o.d -o mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_overlap/mri_compute_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_overlap/mri_compute_overlap.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [521/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -MF mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o.d -o mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_brainvol_stats/mri_brainvol_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_brainvol_stats/mri_brainvol_stats.cpp:10: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [522/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -MF mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o.d -o mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [523/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -MF mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o.d -o mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [524/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -MF mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o.d -o mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:181: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:299:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [525/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT io/CMakeFiles/fs_temp_file.dir/fs_temp_file.cpp.o -MF io/CMakeFiles/fs_temp_file.dir/fs_temp_file.cpp.o.d -o io/CMakeFiles/fs_temp_file.dir/fs_temp_file.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/io/fs_temp_file.cpp [526/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT io/CMakeFiles/fs_temp_dir.dir/fs_temp_dir.cpp.o -MF io/CMakeFiles/fs_temp_dir.dir/fs_temp_dir.cpp.o.d -o io/CMakeFiles/fs_temp_dir.dir/fs_temp_dir.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/io/fs_temp_dir.cpp [527/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -MF mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o.d -o mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_add_xform_to_header/mri_add_xform_to_header.cpp [528/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -MF lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o.d -o lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [529/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -MF mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o.d -o mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [530/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -MF mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o.d -o mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [531/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -MF mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o.d -o mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_register/mri_ca_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_register/mri_ca_register.cpp:54: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [532/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -MF mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o.d -o mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:225:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 225 | for (i = 0 ; i < NSTRUCTURES ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:591:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 591 | for (norm_samples = i = 0 ; i < NSTRUCTURES ; i++) | ^ [533/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -MF mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o.d -o mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘MRI* insert_wm_segmentation(MRI*, MRI*, int, int, GCA*, TRANSFORM*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:2170:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2170 | for (n = 0 ; n < NEDITABLE_LABELS ; n++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int preprocess(MRI*, MRI*, GCA*, TRANSFORM*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:2349:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2349 | for (i = 0 ; i < NEXPANDABLE_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int MRIinsertFromSeg(MRI*, MRI*, std::vector, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:5494:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5494 | for(int n=0; n < InsertFromSegIndices.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:5500:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5500 | for(int n=0; n < InsertFromSegIndices.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:276:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 276 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [534/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -MF mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o.d -o mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 311 | for (i = 0 ; i < NLABELS ; i++) | ^ [535/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -MF mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o.d -o mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap/mri_compute_seg_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap/mri_compute_seg_overlap.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [536/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign -fopenmp -MD -MT mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -MF mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o.d -o mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_make_uchar.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_make_uchar.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics [537/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign-field -fopenmp -MD -MT AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -MF AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o.d -o AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsDenoiseImageFs/AntsDenoiseImageFs.cpp [538/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -MF mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o.d -o mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:43: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:235:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [539/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -MF mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o.d -o mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:168:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [540/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -MF mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o.d -o mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_deface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_deface.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [541/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -MF mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o.d -o mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:144: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:231:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [542/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign -fopenmp -MD -MT mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -MF mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o.d -o mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics [543/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -MF mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o.d -o mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:339:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 339 | for(int n=0; n < psno.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘std::vector ReadFrameList(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:788:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 788 | if(nread == -1) break; | ~~~~~~^~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘double GetPVal(double, std::vector, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:946:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 946 | for(int n=0; n < vallist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘std::vector > GetPStackNos(int, int, int, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1003:41: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1003 | while(ntries < nperm*2 && psno.size() < nperm){ | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1011:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1011 | for(int k=0; k < psno.size(); k++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:142:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 142 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In member function ‘int DualPerm::mergedirs(const char*, const char**, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1037:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1037 | fscanf(fp,"%lu\n",&seedlist[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:282:24: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 282 | sprintf(cdir,"%s/%s",glmdir,dpm->glm->Cname[0]); | ^ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:30: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:282:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 1001) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:287:22: warning: ‘/Xg.dat’ directive writing 7 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 287 | sprintf(fname,"%s/Xg.dat",glmdir); | ^~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:287:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 1007 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:289:22: warning: ‘/C.dat’ directive writing 6 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 289 | sprintf(fname,"%s/C.dat",glmdir); | ^~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:289:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 7 and 1006 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:291:22: warning: ‘/mask.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 291 | sprintf(fname,"%s/mask.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:291:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:294:22: warning: ‘/beta.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 294 | sprintf(fname,"%s/beta.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:294:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:296:22: warning: ‘/rvar.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 296 | sprintf(fname,"%s/rvar.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:296:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:298:22: warning: ‘/gamma.nii.gz’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 298 | sprintf(fname,"%s/gamma.nii.gz",cdir); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:298:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:302:22: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 302 | sprintf(fname,"%s/sig.nii.gz",cdir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:302:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [544/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/findtranslation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/findtranslation.cpp:76: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [545/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -MF mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o.d -o mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [546/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -MF mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o.d -o mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation/mri_edit_segmentation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation/mri_edit_segmentation.cpp:28: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [547/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [548/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/mri_em_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_em_register/mri_em_register.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [549/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -MF mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o.d -o mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_largest_CC/mri_extract_largest_CC.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_extract_largest_CC/mri_extract_largest_CC.cpp:40: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [550/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -MF mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o.d -o mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.cpp:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [551/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -MF mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o.d -o mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations/mri_fuse_segmentations.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations/mri_fuse_segmentations.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [552/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -MF mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o.d -o mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:220: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:348:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 348 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [553/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -MF mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o.d -o mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_gcut/mri_gcut.cpp [554/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign-field -fopenmp -MD -MT AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -MF AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o.d -o AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:74:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for(int n = 2; n < rescaleopts.size(); n++) rescaleids.push_back(atoi(rescaleopts[n].c_str())); | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:76:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 76 | for(int n = 0; n < rescaleids.size(); n++) printf("%d ",rescaleids[n]); | ~~^~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign-field’ may have been intended to silence earlier diagnostics [555/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -MF mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o.d -o mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_info/mri_info.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_info/mri_info.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [556/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -MF mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o.d -o mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp:58: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [557/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -MF mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o.d -o mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp: In function ‘int read_mat(int, char**, int, MATRIX*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:198:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 198 | fscanf(fin, "%s", subject_name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:199:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fscanf(fin, "%f", &ipr); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:200:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fscanf(fin, "%f", &st); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:201:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | fscanf(fin, "%f", &brightness); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:202:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | MATRIX_RELT(in_mat, 1, 2), MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:204:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 | MATRIX_RELT(in_mat, 2, 2), MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:206:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 206 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:208:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 208 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 4, 1), MATRIX_RELT(in_mat, 4, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 | MATRIX_RELT(in_mat, 4, 3), MATRIX_RELT(in_mat, 4, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:229:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), MATRIX_RELT(in_mat, 1, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 | MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:231:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), MATRIX_RELT(in_mat, 2, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:233:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fscanf(fin, "%f %f %f %f;", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:244:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 244 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), MATRIX_RELT(in_mat, 1, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 | MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:246:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), MATRIX_RELT(in_mat, 2, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 | MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:248:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 248 | fscanf(fin, "%f %f %f %f;", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:250:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 4, 1), MATRIX_RELT(in_mat, 4, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | MATRIX_RELT(in_mat, 4, 3), MATRIX_RELT(in_mat, 4, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [558/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -MF mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o.d -o mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:2084:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2084 | for (i = 0 ; i < NLABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:2764:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2764 | for (i = 0 ; i < NLABELS ; i++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:3034:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3034 | for (i = 0 ; i < NLABELS ; i++) | ^ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [559/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -MF mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o.d -o mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_log_likelihood/mri_log_likelihood.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_log_likelihood/mri_log_likelihood.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [560/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -MF mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o.d -o mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2vol/mri_label2vol.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_label2vol/mri_label2vol.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [561/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -MF mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o.d -o mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mask/mri_mask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mask/mri_mask.cpp:44: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [562/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -MF mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o.d -o mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_mc.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_mc.cpp:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [563/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -MF mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o.d -o mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [564/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -MF mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o.d -o mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mris_extract_main_component.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mris_extract_main_component.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [565/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -MF mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o.d -o mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_long_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_long_normalize.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [566/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -MF mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o.d -o mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_pretess.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_pretess.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [567/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -MF mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o.d -o mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp:38: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp:743:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 743 | for (i = 0 ; i < NWM_LABELS ; i++) | ^ [568/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/glut -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -MF mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o.d -o mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_probedicom/mri_probedicom.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_probedicom/mri_probedicom.cpp:57: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [569/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -MF mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o.d -o mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_hypointensities/mri_relabel_hypointensities.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_hypointensities/mri_relabel_hypointensities.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [570/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -MF mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o.d -o mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp:88:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 88 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [571/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -MF mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o.d -o mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_remove_neck/mri_remove_neck.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_remove_neck/mri_remove_neck.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [572/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [573/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [574/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -MF mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o.d -o mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_refine_seg/mri_refine_seg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_refine_seg/mri_refine_seg.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [575/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp:34: /usr/include/ITK-5.4/vcl_iostream.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp:45: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [576/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [577/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.h:34, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.cpp:20: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [578/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [579/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_template.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.h:35, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_template.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [580/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [581/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [582/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [583/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [584/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [585/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [586/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [587/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [588/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp:30: /usr/include/ITK-5.4/vcl_iostream.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [589/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [590/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [591/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [592/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.h:35, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp:27: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [593/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [594/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [595/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_create_tests.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_create_tests.cpp:47: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [596/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [597/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [598/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [599/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/15/bits/stl_uninitialized.h:637:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/15/bits/stl_vector.h:1989:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/15/bits/stl_vector.h:1974:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/15/bits/stl_uninitialized.h:273:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 273 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [600/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [601/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -MF mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o.d -o mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:72: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:128:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [602/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -MF mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o.d -o mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_gradient_info.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_gradient_info.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [603/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -MF mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o.d -o mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segment/mri_segment.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segment/mri_segment.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [604/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -MF mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o.d -o mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp:165: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [605/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -MF mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o.d -o mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp:80:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [606/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -MF mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o.d -o mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:49: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp: In function ‘int LoadDavidsTable(char*, int**, double**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:388:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 388 | for (n=strlen(segname)-4;n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp: In function ‘MRI* MRIrescaleBySeg(MRI*, MRI*, std::vector, double, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:2669:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2669 | for(int k=0; k < segids.size(); k++) printf("%2d ",segids[k]); | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:2679:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2679 | for(int k=0; k < segids.size(); k++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:1589:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1589 | fscanf(fptmp,"%lf",&stiv); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [609/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -MF mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o.d -o mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [610/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -MF mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o.d -o mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:310: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:515:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 515 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [611/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -MF mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o.d -o mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:190:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:1060:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1060 | fscanf(fp,"%lf",&fwhm); | ~~~~~~^~~~~~~~~~~~~~~~ [612/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -MF mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o.d -o mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_tessellate/mri_tessellate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_tessellate/mri_tessellate.cpp:82: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [613/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -MF mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o.d -o mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap/mri_seg_overlap.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap/mri_seg_overlap.cpp:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [614/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -MF mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o.d -o mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:29: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:90:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [615/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -MF mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o.d -o mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp:46: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [616/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -MF mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o.d -o mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp:9: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [617/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -MF mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o.d -o mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2vol/mri_vol2vol.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_vol2vol/mri_vol2vol.cpp:469: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [618/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -MF mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o.d -o mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [619/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -MF mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o.d -o mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_diff/mris_annot_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_annot_diff/mris_annot_diff.cpp:4: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [620/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -MF mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o.d -o mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [621/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -MF mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o.d -o mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp: In function ‘int MRIScomputeNeighbors(MRI_SURFACE*, float)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:674:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 674 | for (n = 0 ; n < nbrs ; n++) | ~~^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:717:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | for (n = 0 ; n < nbrs ; n++) | ~~^~~~~~ [622/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -MF mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o.d -o mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:24:9: warning: ‘_ISOC99_SOURCE’ redefined 24 | #define _ISOC99_SOURCE | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/15/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/15/x86_64-redhat-linux/bits/c++config.h:2641, from /usr/include/c++/15/cstdint:40, from : /usr/include/features.h:216:10: note: this is the location of the previous definition 216 | # define _ISOC99_SOURCE 1 | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:45: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp: In function ‘short int CURV_copy(float*, float*, int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:1128:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1128 | for(i=0; in_points; n++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp: In function ‘e_FILEACCESS CURV_fileRead(char*, long unsigned int*, float**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:2006:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2006 | for(i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [624/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -MF mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o.d -o mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [625/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -MF mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o.d -o mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcautils.hpp:23, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:52: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [626/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -MF mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o.d -o mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature_stats/mris_curvature_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_curvature_stats/mris_curvature_stats.cpp:41: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [627/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -MF mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o.d -o mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_euler_number/mris_euler_number.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_euler_number/mris_euler_number.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [628/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -MF mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o.d -o mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_divide_parcellation/mris_divide_parcellation.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_divide_parcellation/mris_divide_parcellation.cpp:119: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [629/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -MF mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o.d -o mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset/mris_defects_pointset.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset/mris_defects_pointset.cpp:7: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [630/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -MF mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o.d -o mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_fix_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_fix_topology.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [631/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -MF mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o.d -o mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:92: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:383:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [632/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -MF mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o.d -o mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_remove_intersection.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_remove_intersection.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [633/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -MF mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o.d -o mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_inflate/mris_inflate.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_inflate/mris_inflate.cpp:39: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [634/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -MF mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o.d -o mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_jacobian/mris_jacobian.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_jacobian/mris_jacobian.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [635/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -MF mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o.d -o mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:55, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [636/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -MF mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o.d -o mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:140: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:214:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 214 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘label2annotationV2()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:30: warning: ‘%s’ directive writing between 1 and 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 966 | sprintf(report, "%s%s%d", report, (mapped_count) ? ", " : " ", labelmapped); | ^~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:27: note: directive argument in the range [0, 2147483647] 966 | sprintf(report, "%s%s%d", report, (mapped_count) ? ", " : " ", labelmapped); | ^~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:128: In function ‘sprintf’, inlined from ‘label2annotationV2()’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 3 and 1036 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:30:34: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘report’ [-Wrestrict] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘label2annotationV2()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:957:12: note: destination object referenced by ‘restrict’-qualified argument 1 was declared here 957 | char report[1024] = {'\0'}; | ^~~~~~ [637/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -MF mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o.d -o mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:265:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 265 | for (sno = 0; sno < SURFACES ; sno++) | ^ [638/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -MF mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o.d -o mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp:68:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 68 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [639/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:435:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [640/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:86:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [641/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_refine_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_refine_surfaces.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [642/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -MF mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o.d -o mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:391:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 391 | for (sno = 0; sno < SURFACES ; sno++) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:158:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [643/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -MF mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o.d -o mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth/mris_smooth.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_smooth/mris_smooth.cpp:32: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [644/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_mef_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_mef_surfaces.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [645/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -MF mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o.d -o mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::nmasknbrs(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int n=0; n < nbrlist.size(); n++) if(MRIgetVoxVal(m_mask,nbrlist[n],0,0,0)>0) nnbrs++; | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘void SurfSkeleton::get_termbranch()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:124:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::get_branches()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:138:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for(int n=0; n < terminals.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:156:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | for(int k=0; k < nbrlist.size(); k++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::erodeable(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:188:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int n = 0; n < nbrlist.size(); n++) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:193:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | if(n==nbrlist.size()-1 && m==0) last0=1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::write_pointset(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:275:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::write_label(char*, char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 299 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::skeletonize()’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:355:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 355 | for(int eno=0; eno < edgelist.size(); eno++){ | ~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:393:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [646/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -MF mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o.d -o mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_sphere.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_sphere.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [647/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:42: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:54: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTarget(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] > (1.0/pow(10,this->minPGrey)) && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:202:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 202 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > (1.0/pow(10,this->minPGrey)) && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:248:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 248 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:280:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 280 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:291:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:303:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 303 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTargetO(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:350:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 350 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:362:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 362 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] >1.0e-20 && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:461:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > 1e-15 && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:507:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 507 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:539:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 539 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:550:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 550 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:562:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 562 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘std::vector > MRIS_MultimodalRefinement::GetMeanAndVariance(MRIS*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:629:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 629 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 641 | for(int n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(int i = 0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [649/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/face.cpp [650/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -MF mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o.d -o mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_surface_stats/mris_surface_stats.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_surface_stats/mris_surface_stats.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [651/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/globals.cpp [652/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/loop.cpp [653/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -MF mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o.d -o mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_thickness.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_thickness.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [654/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.cpp:16: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:76:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/refwrap.h:41, from /usr/include/c++/15/deque:69, from /usr/include/c++/15/queue:68, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:20: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [655/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -MF mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o.d -o mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_gradient.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_gradient.cpp:37: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [656/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/patchdisk.cpp [657/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/segment.cpp [658/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -MF mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o.d -o mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp:34: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [659/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/vertex.cpp [660/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -MF mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o.d -o mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness_diff/mris_thickness_diff.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_thickness_diff/mris_thickness_diff.cpp:36: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [661/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topo_fixer.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topo_fixer.cpp:35: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [662/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:21: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:76:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:16: /usr/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [663/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:113: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:127: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTarget(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] > (1.0/pow(10,this->minPGrey)) && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:202:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 202 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > (1.0/pow(10,this->minPGrey)) && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:248:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 248 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:280:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 280 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:291:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:303:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 303 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTargetO(MRIS*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:350:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 350 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:362:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 362 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] >1.0e-20 && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:461:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > 1e-15 && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:507:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 507 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:539:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 539 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:550:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 550 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:562:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 562 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘std::vector > MRIS_MultimodalRefinement::GetMeanAndVariance(MRIS*, MRI*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:629:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 629 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 641 | for(int n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(int i = 0; i >, int, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:2101:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2101 | for(int n=0; n < crslist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:339:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [664/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [665/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.h:20, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [666/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:165:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 165 | for (i = 0; i < 4; i++) printf ("%10d", hdr.dime.dim[i + 1]); printf ("\n"); | ^~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:165:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 165 | for (i = 0; i < 4; i++) printf ("%10d", hdr.dime.dim[i + 1]); printf ("\n"); | ^~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:114:30: warning: ‘.hdr’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 114 | sprintf (imgfile, "%s.hdr", imgroot); | ^~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:114:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 260 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:182:30: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 182 | sprintf (imgfile, "%s.img", imgroot); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:182:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 260 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [667/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [668/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [669/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [670/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:138:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 138 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:23: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:138:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:141:32: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 141 | sprintf (outfile, "%s%s.img", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:141:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:217:32: warning: ‘.hdr’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 217 | sprintf (outfile, "%s%s.hdr", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:217:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:225:34: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 225 | sprintf (outfile, "%s%s.img", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:225:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [671/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [672/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [673/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [674/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c: In function ‘Inithdr’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:83:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 244 [-Wstringop-truncation] 83 | strncpy (phdr->hist.exp_time, string + 11, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:84:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 235 [-Wstringop-truncation] 84 | strncpy (phdr->hist.generated, string + 20, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:92:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 255 [-Wstringop-truncation] 92 | strncpy (phdr->hist.originator, string, 9); | ^ [675/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [676/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [677/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:90:38: warning: ‘_flip’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 90 | sprintf (outroot, "%s_flip", imgroot); | ^~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:90:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:99:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 99 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:99:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [678/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [679/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [680/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [681/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [682/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:94:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 94 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:18: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:94:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:98:54: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 98 | if (!strlen (outroot)) sprintf (outroot, "%sz", imgroot); | ^ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:98:25: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 257 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [683/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [684/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [685/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [686/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:94:30: warning: ‘.4dfp.ifh’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 94 | sprintf (filespc, "%s.4dfp.ifh", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:94:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:112:30: warning: ‘.4dfp.hdr’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 112 | sprintf (filespc, "%s.4dfp.hdr", imgroot); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:112:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [687/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c: In function ‘Inithdr’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:83:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 244 [-Wstringop-truncation] 83 | strncpy (phdr->hist.exp_time, string + 11, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:84:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 235 [-Wstringop-truncation] 84 | strncpy (phdr->hist.generated, string + 20, 9); | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:92:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 255 [-Wstringop-truncation] 92 | strncpy (phdr->hist.originator, string, 9); | ^ [688/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [689/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [690/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [691/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -MF mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o.d -o mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_paint/mrisp_paint.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mrisp_paint/mrisp_paint.cpp:30: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [692/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3dd.c [693/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [694/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:148:64: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 148 | if (!strlen (outroot)) sprintf (outroot, "%s_%s", imgroot, trailer); | ^ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:23: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:148:26: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [695/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_open_quiet’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:69:42: warning: ‘.conc’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 69 | sprintf (conc_block->lstfile, "%s.conc", conc_block->lstroot); | ^~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:19: In function ‘sprintf’, inlined from ‘conc_open_quiet’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:69:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_open’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:129:42: warning: ‘.conc’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 129 | sprintf (conc_block->lstfile, "%s.conc", conc_block->lstroot); | ^~~~~ In function ‘sprintf’, inlined from ‘conc_open’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:129:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_new’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:253:45: warning: ‘.conc’ directive writing 5 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 253 | sprintf (conc_block->outfile, "%s_%s.conc", conc_block->lstroot, trailer); | ^~~~~ In function ‘sprintf’, inlined from ‘conc_new’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:253:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 7 or more bytes (assuming 262) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [696/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [697/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [698/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [699/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [700/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [701/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [702/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [703/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [704/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [705/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -MF talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o.d -o talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:33: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘VECTOR* ReadMeanVect(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:383:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘MATRIX* ReadCovMat(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:437:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘double* LoadProbas(char*, int*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:561:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 561 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:596:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 596 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ [706/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:48: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [707/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [708/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [709/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:127:36: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 127 | sprintf (filespc, "%s.4dfp.img", imgroot[j]); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:22: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:127:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:164:36: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 164 | sprintf (filespc, "%s.4dfp.img", imgroot[j]); | ^~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:164:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [710/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [711/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [712/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [713/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [714/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [715/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [716/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [717/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [718/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [719/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [720/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [721/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [722/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [723/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [724/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [725/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [726/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [727/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [728/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [729/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c:112:51: warning: variable ‘vdim’ set but not used [-Wunused-but-set-variable] 112 | int xdim, ydim, zdim, vdim, idim, isbig, isbigm, orientm; | ^~~~ [730/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [731/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [732/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 124 | jndex=3 | ^~~~~ [733/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [734/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [735/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [736/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [737/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/MRISOBBTree.h:26, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:31: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘void Cleanup(std::vector&, std::vector&)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:958:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 958 | for (int n = 0; n < surfDistVector.size(); n++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘void SaveSurfaceDistances(std::vector&, std::string, std::string)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:970:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 970 | for (int n = 0; n < surfDistVector.size(); n++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ [738/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [739/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [740/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:25:38: 25 | real*4 flips(3,3)/-1.,+1.,-1., ! transverse | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:26:38: 26 | & -1.,+1.,+1., ! coronal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:27:38: 27 | & +1.,+1.,+1./ ! sagittal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:29:16: 29 | k=iori-1 ! ifh.orientation | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:53:132: 53 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:55:132: 55 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:44:21: 44 | character*256 rcsid/'$Id: ft4imgo.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [741/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [742/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f.o [743/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [744/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:10: 3 | a=x'7fffffff' | 1 Warning: Hexadecimal constant at (1) uses nonstandard X instead of Z /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:8: 3 | a=x'7fffffff' | 1 Warning: BOZ literal constant at (1) is neither a DATA statement value nor an actual argument of INT/REAL/DBLE/CMPLX intrinsic subprogram [745/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:28:132: 28 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:30:132: 30 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:68:132: 68 | 1 ldefined=ldefined.and.ix(k).gt.0.and.ix(k).le.mx(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:19:21: 19 | character*256 rcsid/'$Id: ft4imgn.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [746/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [747/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:18:27: 18 | integer*4 imgdim(3) ! assumed positive | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:19:27: 19 | real*4 voxdim(3) ! assumed positive | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:26:47: 26 | 1 centere(k)=voxdim(k)*float(imgdim(k)/2) ! as in cross_realign3d_4dfp | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:26:132: 26 | 1 centere(k)=voxdim(k)*float(imgdim(k)/2) ! as in cross_realign3d_4dfp | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:28:38: 28 | call img2vrt(voxdim,centere,e) ! as in cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:29:38: 29 | call vrt2img(voxdim,centere,f) ! as in cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:30:39: 30 | call img2vrt(mmppixo,centero,o) ! as in t4imgs_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:31:39: 31 | call vrt2img(mmppixt,centert,t) ! as in t4imgs_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:33:36: 33 | call matmul(t4atl,o,temp1,4) ! target (atlas) FORTRAN index to virtual | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:34:36: 34 | call matmul(t,temp1,temp2,4) ! to source FORTRAN index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:35:38: 35 | call matmul(f2c,temp2,temp1,4) ! to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:36:36: 36 | call matmul(e,temp1,temp2,4) ! to virtual | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:37:40: 37 | call matmul(t4mat,temp2,temp1,4) ! frame align as computed by cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:38:33: 38 | call matmul(f,temp1,t4,4) ! to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:43:22: 43 | real*4 t4(4,4) ! target FORTRAN index to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:44:34: 44 | real*4 imgt(nxt,nyt,nzt,4) ! source image and spline coefficients | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:45:32: 45 | real*4 imgo(nxo,nyo,nzo) ! target | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:55:132: 55 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:57:132: 57 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:48:17: 48 | logical*4 ldebug/.false./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] [748/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [749/902] /usr/bin/g++ -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_GUI -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -MF tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o.d -o tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp In file included from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:108: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void make_backup(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:3958:11: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3958 | system(command); | ~~~~~~^~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void goto_point(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4040:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4040 | fscanf(fp,"%f %f %f",&xpt,&ypt,&zpt); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_images(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4455:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4455 | fscanf(fptr,"%*s %d",&imnr0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4456:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4456 | fscanf(fptr,"%*s %d",&imnr1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4457:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4457 | fscanf(fptr,"%*s %d",&ptype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4458:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4458 | fscanf(fptr,"%*s %d",&xnum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4459:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4459 | fscanf(fptr,"%*s %d",&ynum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4460:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4460 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4461:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4461 | fscanf(fptr,"%*s %f",&ps); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4462:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4462 | fscanf(fptr,"%*s %f",&st); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4463:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4463 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4464:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4464 | fscanf(fptr,"%*s %f",&xx0); /* strtx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4465:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4465 | fscanf(fptr,"%*s %f",&xx1); /* endx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4466:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4466 | fscanf(fptr,"%*s %f",&yy0); /* strty */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4467:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4467 | fscanf(fptr,"%*s %f",&yy1); /* endy */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4468:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4468 | fscanf(fptr,"%*s %f",&zz0); /* strtz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4469:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4469 | fscanf(fptr,"%*s %f",&zz1); /* endz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4512:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4512 | fread(buf,sizeof(char),bufsize,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_second_images(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4553:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4553 | fscanf(fptr,"%*s %d",&imnr0_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4554:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4554 | fscanf(fptr,"%*s %d",&imnr1_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4555:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4555 | fscanf(fptr,"%*s %d",&ptype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4556:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4556 | fscanf(fptr,"%*s %d",&xnum_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4557:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4557 | fscanf(fptr,"%*s %d",&ynum_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4558:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4558 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4559:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4559 | fscanf(fptr,"%*s %lf",&ps_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4560:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4560 | fscanf(fptr,"%*s %lf",&st_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4561:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4561 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4562:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4562 | fscanf(fptr,"%*s %f",&xx0_2); /* strtx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4563:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4563 | fscanf(fptr,"%*s %f",&xx1_2); /* endx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4564:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4564 | fscanf(fptr,"%*s %f",&yy0_2); /* strty */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4565:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4565 | fscanf(fptr,"%*s %f",&yy1_2); /* endy */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4566:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4566 | fscanf(fptr,"%*s %f",&zz0_2); /* strtz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4567:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4567 | fscanf(fptr,"%*s %f",&zz1_2); /* endz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4612:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4612 | fread(buf_2,sizeof(float),bufsize_2,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_float_images(float***, char*, int, int, int, int, short int**)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4780:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4780 | fread(*buf,sizeof(char),HEADERSIZE,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4805:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4805 | fread(*buf,sizeof(short),bufsize,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘MATRIX* Load4x4(char*)’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:5346:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5346 | fgets(s,1000,fp); | ~~~~~^~~~~~~~~~~ [750/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [751/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/compute_vox2vox.c [752/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [753/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [754/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 124 | jndex=3 | ^~~~~ [755/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [756/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [757/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [758/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [759/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [760/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [761/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [762/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [763/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:10: 3 | a=x'7fffffff' | 1 Warning: Hexadecimal constant at (1) uses nonstandard X instead of Z /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:8: 3 | a=x'7fffffff' | 1 Warning: BOZ literal constant at (1) is neither a DATA statement value nor an actual argument of INT/REAL/DBLE/CMPLX intrinsic subprogram [764/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [765/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [766/902] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [767/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [768/902] : && /usr/bin/cmake -E rm -f packages/svm/libsvm.a && /usr/bin/ar qc packages/svm/libsvm.a packages/svm/CMakeFiles/svm.dir/svm-data-param.cpp.o packages/svm/CMakeFiles/svm.dir/svm-kernel.cpp.o packages/svm/CMakeFiles/svm.dir/svm-lib-c.cpp.o packages/svm/CMakeFiles/svm.dir/svm-lib.cpp.o packages/svm/CMakeFiles/svm.dir/svm-model.cpp.o packages/svm/CMakeFiles/svm.dir/svm-param.cpp.o packages/svm/CMakeFiles/svm.dir/svm-similarity.cpp.o packages/svm/CMakeFiles/svm.dir/svm-sketch.cpp.o && /usr/bin/ranlib packages/svm/libsvm.a && : [769/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:25:38: 25 | real*4 flips(3,3)/-1.,+1.,-1., ! transverse | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:26:38: 26 | & -1.,+1.,+1., ! coronal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:27:38: 27 | & +1.,+1.,+1./ ! sagittal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:29:16: 29 | k=iori-1 ! ifh.orientation | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:53:132: 53 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:55:132: 55 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:44:21: 44 | character*256 rcsid/'$Id: ft4imgo.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [770/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [771/902] : && /usr/bin/cmake -E rm -f vtkutils/libvtkutils.a && /usr/bin/ar qc vtkutils/libvtkutils.a vtkutils/CMakeFiles/vtkutils.dir/vtkFreesurferLookupTable.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkArrowPipeline.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o && /usr/bin/ranlib vtkutils/libvtkutils.a && : [772/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 124 | jndex=3 | ^~~~~ [773/902] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f.o /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:64:23: 64 | real*4 d(-nx/2:nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:65:45: 65 | real*4 g(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:66:45: 66 | real*4 h(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:70:12: 70 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:71:12: 71 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:72:12: 72 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:74:132: 74 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:75:132: 75 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:76:132: 76 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:83:22: 83 | do 3 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:84:132: 84 | do 3 iy=-ny/2,ny/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:85:132: 85 | do 3 ix=-nx/2,nx/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:89:132: 89 | 3 call splint3dvl(f,nx,ny,nz,d2xf,d2yf,d2zf,x,y,z,g(ix,iy,iz),h(ix,iy,iz)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:91:22: 91 | do 4 ix=-nx/2,nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:92:132: 92 | 4 d(ix)=float(ix0)+del*float(ix) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:95:23: 95 | do 51 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:99:20: 99 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:100:86: 100 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(g(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:105:23: 105 | do 61 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:109:20: 109 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:110:86: 110 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(h(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:125:45: 125 | real*4 g(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:126:23: 126 | real*4 d(-nx/2:nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:130:12: 130 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:131:12: 131 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:132:12: 132 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:134:132: 134 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:135:132: 135 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:136:132: 136 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:143:22: 143 | do 3 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:144:132: 144 | do 3 iy=-ny/2,ny/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:145:132: 145 | do 3 ix=-nx/2,nx/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:150:132: 150 | 3 g(ix,iy,iz)=v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:152:22: 152 | do 4 ix=-nx/2,nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:153:132: 153 | 4 d(ix)=float(ix0)+del*float(ix) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:156:23: 156 | do 51 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:160:20: 160 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:161:86: 161 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(g(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:210:132: 210 | do 21 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 21 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:254:132: 254 | do 31 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 31 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:301:132: 301 | do 31 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 31 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:351:132: 351 | 1 a(iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:355:132: 355 | 2 a(iz+nz*(iz+1))=1./6. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:359:132: 359 | do 11 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 11 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:446:12: 446 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:447:12: 447 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:448:12: 448 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:450:132: 450 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:451:132: 451 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:452:132: 452 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:487:132: 487 | 11 write (*,"()") | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:504:12: 504 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:505:12: 505 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:506:12: 506 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:508:132: 508 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:509:132: 509 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:510:132: 510 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:534:132: 534 | 11 write (*,"(10f10.4)")x,v,grad,(grad(i)-test(i),i=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1) [774/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=utils/CMakeFiles/fsPrintHelp.dir/link.d utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -o utils/fsPrintHelp packages/xml2/libxml2.a /usr/lib64/libz.so && : [775/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=io/CMakeFiles/fs_temp_file.dir/link.d io/CMakeFiles/fs_temp_file.dir/fs_temp_file.cpp.o -o io/fs_temp_file utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [776/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=io/CMakeFiles/fs_temp_dir.dir/link.d io/CMakeFiles/fs_temp_dir.dir/fs_temp_dir.cpp.o -o io/fs_temp_dir utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [777/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_and/CMakeFiles/mri_or.dir/link.d mri_and/CMakeFiles/mri_or.dir/mri_or.cpp.o -o mri_and/mri_or utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [778/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_and/CMakeFiles/mri_and.dir/link.d mri_and/CMakeFiles/mri_and.dir/mri_and.cpp.o -o mri_and/mri_and utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [779/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=lta_convert/CMakeFiles/lta_convert.dir/link.d lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -o lta_convert/lta_convert utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [780/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/link.d AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -o AntsDenoiseImageFs/AntsDenoiseImageFs utils/libutils.a /usr/lib64/libITKCommon-5.4.so.1 packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm -lm -ldl && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [781/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/link.d mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -o mri_add_xform_to_header/mri_add_xform_to_header utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [782/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/link.d AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -o AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs utils/libutils.a /usr/lib64/libITKCommon-5.4.so.1 packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm -lm -ldl && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [783/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_annotation2label/CMakeFiles/mri_annotation2label.dir/link.d mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -o mri_annotation2label/mri_annotation2label utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [784/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/link.d mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -o mri_aparc2aseg/mri_aparc2aseg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [785/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/link.d mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -o mri_aparc2wmseg/mri_aparc2wmseg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [786/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/link.d mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -o mri_aparc2aseg/mri_surf2volseg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [787/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_binarize/CMakeFiles/mri_binarize.dir/link.d mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -o mri_binarize/mri_binarize utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [788/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/link.d mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -o mri_brainvol_stats/mri_brainvol_stats utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [789/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/link.d mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -o mri_ca_normalize/mri_ca_normalize utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [790/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_label/CMakeFiles/mri_ca_label.dir/link.d mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -o mri_ca_label/mri_ca_label utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [791/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cc/CMakeFiles/mri_cc.dir/link.d mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -o mri_cc/mri_cc utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [792/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_register/CMakeFiles/mri_ca_register.dir/link.d mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -o mri_ca_register/mri_ca_register utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [793/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/link.d mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -o mri_compute_overlap/mri_compute_overlap utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [794/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concat/CMakeFiles/mri_concat.dir/link.d mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -o mri_concat/mri_concat utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [795/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/link.d mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -o mri_compute_seg_overlap/mri_compute_seg_overlap utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [796/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/link.d mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -o mri_concatenate_lta/mri_concatenate_lta utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [797/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_convert/CMakeFiles/mri_make_uchar.dir/link.d mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -o mri_convert/mri_make_uchar utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [798/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_convert/CMakeFiles/mri_convert.dir/link.d mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -o mri_convert/mri_convert utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [799/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_coreg/CMakeFiles/mri_coreg.dir/link.d mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -o mri_coreg/mri_coreg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [800/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_deface/CMakeFiles/mri_deface.dir/link.d mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -o mri_deface/mri_deface utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [801/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_deface/CMakeFiles/mri_defacer.dir/link.d mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -o mri_deface/mri_defacer utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [802/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_diff/CMakeFiles/mri_diff.dir/link.d mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -o mri_diff/mri_diff utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [803/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dualperm/CMakeFiles/mri_dualperm.dir/link.d mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -o mri_dualperm/mri_dualperm utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [804/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/link.d mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -o mri_edit_segmentation/mri_edit_segmentation utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [805/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/link.d mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -o mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [806/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/link.d mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -o mri_extract_largest_CC/mri_extract_largest_CC utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [807/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/link.d mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -o mri_edit_wm_with_aseg/mri_edit_wm_with_aseg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [808/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_em_register/CMakeFiles/mri_em_register.dir/link.d mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -o mri_em_register/mri_em_register utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [809/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/link.d mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -o mri_fuse_segmentations/mri_fuse_segmentations utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [810/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fill/CMakeFiles/mri_fill.dir/link.d mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -o mri_fill/mri_fill utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [811/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fwhm/CMakeFiles/mri_fwhm.dir/link.d mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -o mri_fwhm/mri_fwhm utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [812/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gcut/CMakeFiles/mri_gcut.dir/link.d mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -o mri_gcut/mri_gcut utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [813/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/link.d mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -o mri_matrix_multiply/mri_matrix_multiply utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [814/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_info/CMakeFiles/mri_info.dir/link.d mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -o mri_info/mri_info utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [815/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label2label/CMakeFiles/mri_label2label.dir/link.d mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -o mri_label2label/mri_label2label utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [816/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label2vol/CMakeFiles/mri_label2vol.dir/link.d mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -o mri_label2vol/mri_label2vol utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [817/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/link.d mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -o mri_log_likelihood/mri_log_likelihood utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [818/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mask/CMakeFiles/mri_mask.dir/link.d mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -o mri_mask/mri_mask utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [819/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mri_mc.dir/link.d mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -o mri_mc/mri_mc utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [820/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mri_pretess.dir/link.d mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -o mri_mc/mri_pretess utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [821/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_probedicom/CMakeFiles/mri_probedicom.dir/link.d mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -o mri_probedicom/mri_probedicom utils/libutils.a /usr/lib64/libOpenGL.so /usr/lib64/libGLX.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [822/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mris_extract_main_component.dir/link.d mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -o mri_mc/mris_extract_main_component utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [823/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/link.d mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -o mri_normalize_tp2/mri_normalize_tp2 utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [824/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize/CMakeFiles/mri_normalize.dir/link.d mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -o mri_normalize/mri_normalize utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [825/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize/CMakeFiles/mri_long_normalize.dir/link.d mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -o mri_normalize/mri_long_normalize utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [826/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/link.d mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -o mri_relabel_hypointensities/mri_relabel_hypointensities utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [827/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_refine_seg/CMakeFiles/mri_refine_seg.dir/link.d mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -o mri_refine_seg/mri_refine_seg utils/libutils.a utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [828/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/link.d mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -o mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [829/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_remove_neck/CMakeFiles/mri_remove_neck.dir/link.d mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -o mri_remove_neck/mri_remove_neck utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [830/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_robust_register.dir/link.d mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -o mri_robust_register/mri_robust_register utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/15/libgfortran.so -lquadmath packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [831/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_create_tests.dir/link.d mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -o mri_robust_register/mri_create_tests utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/15/libgfortran.so -lquadmath packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [832/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/lta_diff.dir/link.d mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -o mri_robust_register/lta_diff utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/15/libgfortran.so -lquadmath packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [833/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_robust_template.dir/link.d mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -o mri_robust_register/mri_robust_template utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/15/libgfortran.so -lquadmath packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [834/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_gradient_info.dir/link.d mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -o mri_robust_register/mri_gradient_info utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/15/libgfortran.so -lquadmath packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [835/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seg_diff/CMakeFiles/mri_seg_diff.dir/link.d mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -o mri_seg_diff/mri_seg_diff utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [836/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/link.d mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -o mri_seg_overlap/mri_seg_overlap utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [837/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segment/CMakeFiles/mri_segment.dir/link.d mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -o mri_segment/mri_segment utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [838/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segreg/CMakeFiles/mri_segreg.dir/link.d mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -o mri_segreg/mri_segreg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [839/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_tessellate/CMakeFiles/ico_supersample.dir/link.d mri_tessellate/CMakeFiles/ico_supersample.dir/ico_supersample.cpp.o -o mri_tessellate/ico_supersample utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : [840/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_si_prep/CMakeFiles/mri_si_prep.dir/link.d mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -o mri_si_prep/mri_si_prep utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [841/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segstats/CMakeFiles/mri_segstats.dir/link.d mri_segstats/CMakeFiles/mri_segstats.dir/mri_segstats.cpp.o -o mri_segstats/mri_segstats utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [842/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_stats2seg/CMakeFiles/mri_stats2seg.dir/link.d mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -o mri_stats2seg/mri_stats2seg utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [843/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surf2surf/CMakeFiles/mri_surf2surf.dir/link.d mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -o mri_surf2surf/mri_surf2surf utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [844/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surf2vol/CMakeFiles/mri_surf2vol.dir/link.d mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -o mri_surf2vol/mri_surf2vol utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [845/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surfcluster/CMakeFiles/mri_surfcluster.dir/link.d mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -o mri_surfcluster/mri_surfcluster utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [846/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_tessellate/CMakeFiles/mri_tessellate.dir/link.d mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -o mri_tessellate/mri_tessellate utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [847/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_vol2surf/CMakeFiles/mri_vol2surf.dir/link.d mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -o mri_vol2surf/mri_vol2surf utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [848/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_voldiff/CMakeFiles/mri_voldiff.dir/link.d mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -o mri_voldiff/mri_voldiff utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [849/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_vol2vol/CMakeFiles/mri_vol2vol.dir/link.d mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -o mri_vol2vol/mri_vol2vol utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [850/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/link.d mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -o mri_watershed/mri_validate_skull_stripped utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [851/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/CMakeFiles/mri_watershed.dir/link.d mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -o mri_watershed/mri_watershed utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:170:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:172:17: note: the first difference of corresponding definitions is field ‘type’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [852/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/link.d mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -o mri_watershed/brain_volume/mri_brain_volume utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:70:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:71:17: note: the first difference of corresponding definitions is field ‘type’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [853/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/link.d mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -o mris_anatomical_stats/mris_anatomical_stats utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [854/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_annot_diff/CMakeFiles/mris_annot_diff.dir/link.d mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -o mris_annot_diff/mris_annot_diff utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [855/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_calc/CMakeFiles/mris_calc.dir/link.d mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -o mris_calc/mris_calc utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [856/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ca_label/CMakeFiles/mris_ca_label.dir/link.d mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -o mris_ca_label/mris_ca_label utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘MRISsegmentAnnotated’, inlined from ‘GCSArelabelIslands.constprop.isra’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:2487:25: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15197:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘GCSArelabelIslands.constprop.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [857/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_convert/CMakeFiles/mris_convert.dir/link.d mris_convert/CMakeFiles/mris_convert.dir/mris_convert.cpp.o -o mris_convert/mris_convert utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [858/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/link.d mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -o mris_curvature_stats/mris_curvature_stats utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [859/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_curvature/CMakeFiles/mris_curvature.dir/link.d mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -o mris_curvature/mris_curvature utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [860/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/link.d mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -o mris_defects_pointset/mris_defects_pointset utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [861/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_diff/CMakeFiles/mris_diff.dir/link.d mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -o mris_diff/mris_diff utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [862/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/link.d mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -o mris_divide_parcellation/mris_divide_parcellation utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [863/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_euler_number/CMakeFiles/mris_euler_number.dir/link.d mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -o mris_euler_number/mris_euler_number utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [864/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fix_topology/CMakeFiles/mris_fix_topology.dir/link.d mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -o mris_fix_topology/mris_fix_topology utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [865/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/link.d mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -o mris_fix_topology/mris_remove_intersection utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [866/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_info/CMakeFiles/mris_info.dir/link.d mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -o mris_info/mris_info utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [867/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_inflate/CMakeFiles/mris_inflate.dir/link.d mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -o mris_inflate/mris_inflate utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [868/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label2annot/CMakeFiles/mris_label2annot.dir/link.d mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -o mris_label2annot/mris_label2annot utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [869/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_jacobian/CMakeFiles/mris_jacobian.dir/link.d mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -o mris_jacobian/mris_jacobian utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [870/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_left_right_register/CMakeFiles/mris_left_right_register.dir/link.d mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -o mris_left_right_register/mris_left_right_register utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [871/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_target_pos.dir/link.d mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -o mris_make_surfaces/mris_target_pos utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [872/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mri_stopmask.dir/link.d mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -o mris_make_surfaces/mri_stopmask utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [873/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -o mris_make_surfaces/mris_make_surfaces utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [874/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/link.d mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -o mris_make_surfaces/mris_autodet_gwstats utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [875/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_place_surface.dir/link.d mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -o mris_make_surfaces/mris_place_surface utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [876/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -o mris_make_surfaces/mris_mef_surfaces utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [877/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -o mris_make_surfaces/mris_refine_surfaces utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [878/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register/CMakeFiles/mris_register.dir/link.d mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -o mris_register/mris_register utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [879/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_skeletonize/CMakeFiles/mris_skeletonize.dir/link.d mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -o mris_skeletonize/mris_skeletonize utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [880/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/link.d mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -o mris_sphere/mris_remove_negative_vertices utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [881/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_smooth/CMakeFiles/mris_smooth.dir/link.d mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -o mris_smooth/mris_smooth utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [882/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_surface_stats/CMakeFiles/mris_surface_stats.dir/link.d mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -o mris_surface_stats/mris_surface_stats utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [883/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sphere/CMakeFiles/mris_sphere.dir/link.d mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -o mris_sphere/mris_sphere utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [884/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_thickness.dir/link.d mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -o mris_thickness/mris_thickness utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [885/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_intensity_profile.dir/link.d mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -o mris_thickness/mris_intensity_profile utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [886/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_gradient.dir/link.d mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -o mris_thickness/mris_gradient utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [887/902] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/link.d mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -o mris_thickness_diff/mris_thickness_diff utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [894/902] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/imgreg_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -o talairach_avi/imgreg_4dfp && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:40:17: warning: type of ‘t4file2param_’ does not match original declaration [-Wlto-type-mismatch] 40 | extern void t4file2param_ (int *mode, char *t4file, float *params); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: type mismatch in parameter 4 41 | subroutine t4file2param(mode,t4_file,param) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: ‘t4file2param’ was previously declared here [895/902] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/compute_vox2vox.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o -o talairach_avi/compute_vox2vox && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:64:21: warning: type of ‘set_rnan’ does not match original declaration [-Wlto-type-mismatch] 64 | call set_rnan(imgo(kx,ky,kz)) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: ‘set_rnan’ was previously declared here 1 | subroutine set_rnan(a) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/compute_vox2vox.c:35:17: warning: type of ‘t4_read_’ does not match original declaration [-Wlto-type-mismatch] 35 | extern void t4_read_ (char *t4file, float *t4); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type mismatch in parameter 3 91 | subroutine t4_read(t4_file,t4) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: ‘t4_read’ was previously declared here [896/902] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f.o -o talairach_avi/t4imgs_4dfp && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:64:21: warning: type of ‘set_rnan’ does not match original declaration [-Wlto-type-mismatch] 64 | call set_rnan(imgo(kx,ky,kz)) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: ‘set_rnan’ was previously declared here 1 | subroutine set_rnan(a) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c:41:17: warning: type of ‘t4_read_’ does not match original declaration [-Wlto-type-mismatch] 41 | extern void t4_read_ (char *t4file, float *t4); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type mismatch in parameter 3 91 | subroutine t4_read(t4_file,t4) | ^ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: ‘t4_read’ was previously declared here [897/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/link.d mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -o mris_topo_fixer/mris_topo_fixer utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp: In member function ‘_OverAlloc’: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:94:54: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:105:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here In member function ‘_Allocate’, inlined from ‘__ct ’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:35:12, inlined from ‘MRIStoSurface’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:928:66: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:83:36: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new: In function ‘MRIStoSurface’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here In member function ‘_Allocate’, inlined from ‘__ct ’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:35:12, inlined from ‘MRIStoSurface’ at /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:928:66: /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:86:28: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/c++/15/new: In function ‘MRIStoSurface’: /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here [898/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volmask/CMakeFiles/mris_volmask.dir/link.d mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -o mris_volmask/mris_volmask utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [899/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volmask/CMakeFiles/mris_volmask_novtk.dir/link.d mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -o mris_volmask/mris_volmask_novtk utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [900/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mrisp_paint/CMakeFiles/mrisp_paint.dir/link.d mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -o mrisp_paint/mrisp_paint utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [901/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=tkregister2/CMakeFiles/tkregister2_cmdl.dir/link.d tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -o tkregister2/tkregister2_cmdl utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [902/902] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_afd/CMakeFiles/talairach_afd.dir/link.d talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -o talairach_afd/talairach_afd utils/libutils.a packages/jpeg/libjpeg.a packages/xml2/libxml2.a packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio packages/expat/libexpat.a /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff && : /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.U7ADv3 + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + '[' /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/freesurfer-8.2.0-build + mkdir /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + rm -f redhat-linux-build/distribution/average/cmake_install.cmake + touch redhat-linux-build/distribution/average/cmake_install.cmake + echo '' + find redhat-linux-build -name cmake_install.cmake -exec grep -l 'fspython\|pip install\|python3\.8' '{}' + + read f + echo '# Cleared for RPM build' + read f + find redhat-linux-build -name cmake_install.cmake -exec sed -i '/file(MAKE_DIRECTORY\|configure_file\|execute_process\|message(STATUS/s|/usr/lib/freesurfer|$ENV{DESTDIR}/usr/lib/freesurfer|g' '{}' + + DESTDIR=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./ASegStatsLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./DefectLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./FreeSurferColorLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SegmentNoLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./Simple_surface_labels2005.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./Simple_surface_labels2009.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SubCorticalMassLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./tkmeditParcColorsCMA -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./WMParcStatsLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/FreeSurferColorLUT.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels24.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels35.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels5.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/ReducedLabels4.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/compressed_lut.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/luts/nonlat.txt -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./FreeSurferEnv.csh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./FreeSurferEnv.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SetUpFreeSurfer.csh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./SetUpFreeSurfer.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./sources.csh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/./sources.sh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic0.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic1.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic2.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic3.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic4.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic5.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic6.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/ic7.tri -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/inner_skull.dat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/outer_skin.dat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/lib/bem/outer_skull.dat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license-trimesh-python.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.anaconda-miniconda-python.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.ants.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.apache.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.argparse.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.blt.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.boost.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.certifi-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.charls.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.cortechs.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.dcm2niix.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.dcmtk.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.expat.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.fib.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.fireants -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.freesurfer_SLA.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.freetype2-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.fsl.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.gifti.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.glut.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.itk.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.jpeg.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.json.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.lapack.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.loguru.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.minc.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.netcdf.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.nifti.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.niftyreg.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.nrrdio.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.opencv-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.opencv-python.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.petsc.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.pybind.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.qt.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.swig.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.tcltk.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.tensorflow-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.tetgen.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.thrust.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.tiff.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.tix.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.tqdm-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.vtk.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.vxl.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/license.xml2.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/fsafd/TalairachingCovariance.adf -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/fsafd/TalairachingMean.adf -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/fsafd/TalairachingProbas.adf -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/subjects/README -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/subjects/sample-001.mgz -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/subjects/sample-002.mgz -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/etc/recon-config.yaml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/etc/global-expert-options.v8.txt -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fsPrintHelp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/AntsDenoiseImageFs.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/AntsDenoiseImageFs -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/AntsN4BiasFieldCorrectionFs.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/AntsN4BiasFieldCorrectionFs -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/lta_convert.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/lta_convert -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/fs_temp_file.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/fs_temp_dir.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_temp_file -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_temp_dir -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_and -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mri_or -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/mri_add_xform_to_header.help.xml -- 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Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/mrisp_paint.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mrisp_paint -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/samseg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/samseg-long -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/computeTissueConcentrations -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/computeTissueConcentrations -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/gems_compute_atlas_probs -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/gems_compute_atlas_probs -- Installing: 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Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/create_nnUNet_v1.7_env.sh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/csvprint -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dcmdir-info-mgh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dcmsplit -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dcmunpack -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/deface_subject -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/defect2seg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/defect-seg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dicom-rename -- Configuring: 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Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs-check-os -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs-eddy -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_install_mcr -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_install_cuda -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_lib_check -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_run_from_mcr -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_time -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs-topup -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_tutorial_data -- Configuring: 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Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/segment_subject_talmgh -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/segpons -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/setlabelstat -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sfa2fieldsign -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/show_tal -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/skip_long_make_checks -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/slicedelay -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sphere_subject -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/sphere_subject-lh -- Configuring: 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/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/topofit -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/trac-all -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/trac-paths -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/trac-preproc -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/train-gcs-atlas -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpack_ima.tcl -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpack_ima1.tcl -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpack_mnc.tcl -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpackimadir -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpackimadir2 -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpackmincdir -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/unpacksdcmdir -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/UpdateNeeded -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/usbtree -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vertexvol -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vlrmerge-mni -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vno_match_check -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vol2segavg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vol2subfield -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vol2symsurf -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/vsm-smooth -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/wfilemask -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/wm-anat-snr -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/wmedits2surf -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/wmsaseg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/xcerebralseg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/xcorr -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/xfmrot -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/xhemi-tal -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/xhemireg -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/xsanatreg -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_submit_jobs -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_submit_jobs -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_qdec_table -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_qdec_table -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_submit_postproc -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_submit_postproc -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_stats_tps -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_stats_tps -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_stats_slopes -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_stats_slopes -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_mris_slopes -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_mris_slopes -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/long_stats_combine -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/long_stats_combine -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/aparcstats2table -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/aparcstats2table -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/asegstats2table -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/asegstats2table -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/tractstats2table -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/tractstats2table -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/stattablediff -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/stattablediff -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/table2map -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/table2map -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/merge_stats_tables -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/merge_stats_tables -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/fspalm -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fspalm -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/rca-config -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/rca-config -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/rca-config2csh -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/rca-config2csh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/slicedelay -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/slicedelay -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/fsrealpath -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fsrealpath -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/python/scripts/dsurffe -- Configuring python wrapper: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/dsurffe -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/mri_nu_correct.mni.help.xml -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/bbregister -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/bbregister.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/install_nnUNet_v1.7_instructions.md -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/fs_spmreg.glnxa64 -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/irepifitvol.glnx64 -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/tkregister2_cmdl -- Symlinking: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/tkregister2 to tkregister2_cmdl -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/talairach_avi -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/mpr2mni305 -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/brec -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/brec.awk -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/t4img_4dfp -- Configuring: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/tal_QC_AZS -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/analyzeto4dfp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/4dfptoanalyze -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/flip_4dfp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/zero_lt_4dfp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/ifh2hdr -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/gauss_4dfp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/imgreg_4dfp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/t4imgs_4dfp -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/bin/compute_vox2vox -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/docs/xml/talairach_avi.help.xml -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.hdr -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.ifh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img.rec -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.mat -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/3T18yoSchwartzReactN32_as_orig.lst -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.hdr -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.ifh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img.rec -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2C_as_mni_average_305.4dfp.hdr -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2C_as_mni_average_305.4dfp.ifh -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2C_as_mni_average_305.4dfp.img -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2C_as_mni_average_305.4dfp.img.rec -- Installing: /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/lib/freesurfer/average/711-2C_as_mni_average_305.4dfp.mat + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib/freesurfer/bin/tal_QC_AZS from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer/bin/t4img_4dfp from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer/bin/brec from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer/bin/mpr2mni305 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talairach_avi from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/bbregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dsurffe from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fsrealpath from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/slicedelay from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/rca-config2csh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/rca-config from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fspalm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/merge_stats_tables from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/table2map from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/stattablediff from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/tractstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/asegstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/aparcstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_stats_combine from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_mris_slopes from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_stats_slopes from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_stats_tps from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_submit_postproc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_qdec_table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/long_submit_jobs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/xsanatreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xhemireg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/xhemi-tal from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xfmrot from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xcorr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/xcerebralseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wmsaseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wmedits2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wm-anat-snr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/wfilemask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vsm-smooth from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vol2symsurf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vol2subfield from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vol2segavg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vno_match_check from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vlrmerge-mni from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/vertexvol from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/usbtree from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/lib/freesurfer/bin/UpdateNeeded from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/unpacksdcmdir from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpackmincdir from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/unpackimadir2 from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpackimadir from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/unpack_mnc.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpack_ima1.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/unpack_ima.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/train-gcs-atlas from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/trac-preproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/trac-paths from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/trac-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/topofit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tksurferfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tkregisterfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tkmeditfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/thickdiffmap from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/test_tutorials.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/test_recon-all.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talsegprob from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talairach_mgh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/talairach2 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/talairach from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/tal_compare from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/surfreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/stem2fname from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/sratio from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/spmregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/spmmat2register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/spm_t_to_b from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/sphere_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/sphere_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/sphere_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/skip_long_make_checks from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/show_tal from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/sfa2fieldsign from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/setlabelstat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segpons from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segment_subject_talmgh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_sc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_old_skull_strip from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_notal2 from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject_notal from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/segment_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segment_monkey from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/seg2filled from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/seg2recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/seg2cc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/scgm-mask from /usr/bin/env tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/samseg2recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/run_mris_preproc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/run-qdec-glm from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rtview from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reregister_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/renormalize_T1_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/renormalize_subject_keep_editting from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/renormalize_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/remove_talairach from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/reinflate_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reinflate_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reinflate_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/register_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_subject_flash from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_elderly_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register_child from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/register.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reg2subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reg-mni305.2mm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/reg-feat2anat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/reconbatchjobs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/recon-all-exvivo from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/recon-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-talairach from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-surfreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-rcac-prep from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-long-tp-init from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-fix-ento from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rca-base-init from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rebuild_gca_atlas.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rcbf-prep from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/rbbr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/qdec from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/progressbar.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/print_unique_labels.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/post-recon-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/polyorder from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/plot_structure_stats.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/pctsurfcon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/parc_atlas_jackknife_test from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/orientLAS from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/ms_refine_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/mris_volsmooth from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mris_preproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_vsinus_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_reorient_LR.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_nu_correct.mni from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_motion_correct2 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_motion_correct.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_motion_correct from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/mri_mergelabels from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_mcadura_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_glmfit-sim from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_entowm_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_create_t2combined from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_align_long.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri_add_new_tp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri-sph2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri-funcvits from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mri-func2sph from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_tables-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_tables-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/morph_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/morph_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/morph_rgb-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_rgb-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_only_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_only_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/morph_only_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mni152reg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mmppsp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mksurfatlas from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/mksubjdirs from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer/bin/mkmnc_index.tcl is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/mkima_index.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/mkheadsurf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/minc2seqinfo from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mideface from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/mergeseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/meanval from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/map_to_base from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/map_central_sulcus from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/map_all_labels-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/map_all_labels from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/make_upright from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/make_symmetric from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/make_exvivo_filled from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/make_hemi_mask from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/make_folding_atlas from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_cortex_label from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_volume from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_surface from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make_average_subcort from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/make-segvol-table from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/lpcregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/longmc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/long_create_orig from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/long_create_base_sigma from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/listsubj from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/labels_union from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/labels_intersect from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/labels_disjoint from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/label_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_subject_flash from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_elderly_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label_child from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/label-cortex from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/josareg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/jkgcatrain from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isolate_labels_keeporigval.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isolate_labels.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isnifti from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/IsLTA from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/isanalyze from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/is-surface from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/irepifitvol from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_sc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_new-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_new-lh from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/inflate_subject_new from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/inflate_subject3 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/inflate_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/inflate_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/help_xml_validate from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/gtmstats2table from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gtmseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/groupstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/groupstats from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/grad_unwarp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/getfullpath from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/get_label_thickness from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/gcatrainskull from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcatrain from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcaprepone from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gcainit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/gca-apply from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fvcompare from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsxvfb from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsvglrun from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fsr-import from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-longpreproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-mergexopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-getxopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-checkxopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsr-coreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fslregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsl_sub_mgh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fsl_rigid_register from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer/bin/fsl.5.0.2.xyztrans.sch is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/fsfget from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/fsdcmdecompress from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fscalc.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fscalc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs_update from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_tutorial_data from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs-topup from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs_time from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs_run_from_mcr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_lib_check from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_install_cuda from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs_install_mcr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fs-eddy from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs-check-os from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fs-check-version from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fsfirst.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/freesurfer from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/fname2stem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/fname2ext from /bin/csh -f to #!/usr/bin/csh -f *** WARNING: ./usr/lib/freesurfer/bin/flirt.newdefault.20080811.sch is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/fixup_mni_paths from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer/bin/fix_subject_corrected-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fix_subject_corrected-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fix_subject_corrected from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/fix_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/fix_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/fix_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/findsession from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/feat2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/feat2segstats from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/exvivo-hemi-proc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/extract_seg_waveform from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/epidewarp.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dt_recon from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.multiscan.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.long.multiscan.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.long.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer/bin/dmrirc.example is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer/bin/dmri_bset from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dicom-rename from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/defect-seg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/defect2seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/deface_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/dcmunpack from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dcmsplit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/dcmdir-info-mgh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/csvprint from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib/freesurfer/bin/create_nnUNet_v1.7_env.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/cp-dicom from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/cor_to_minc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/conf2hires from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/compute_label_volumes.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/compute_label_vals.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/compute_interrater_variability.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/clear_fs_env.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/checkMCR.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/check_subject from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/lib/freesurfer/bin/check_recons.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/cblumwmgyri from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/build_desikan_killiany_gcs.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/bin/bugr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/browse-minc-header.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer/bin/bmedits2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/biasfield from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/beta2sxa from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/bedpostx_mgh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/bbmask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/bblabel from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/avi2talxfm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer/bin/asegstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aseg2feat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/apas2aseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aparcstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aparc_stats_aseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/aparc2feat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/annot2volseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/annot2std from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/segment_subregions from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/sbtiv from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_samseg_long from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/run_samseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/prepareAtlasDirectory from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/merge_add_mesh_alphas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/gems_compute_atlas_probs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/computeTissueConcentrations from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer/bin/samseg-long from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/bin/samseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer/sources.sh from /bin/bash -p to #!/usr/bin/bash -p mangling shebang in /usr/lib/freesurfer/sources.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer/SetUpFreeSurfer.sh from /bin/bash -p to #!/usr/bin/bash -p mangling shebang in /usr/lib/freesurfer/SetUpFreeSurfer.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT Scanned 16 directories and 658 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/freesurfer-8.2.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: freesurfer-8.2.0-2.fc43.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.g9fZlH + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + cd freesurfer-8.2.0 + LICENSEDIR=/builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer + cp -pr /builddir/build/BUILD/freesurfer-8.2.0-build/freesurfer-8.2.0/LICENSE.txt /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(cephes) bundled(dcm2niix) bundled(dicom) bundled(minc) bundled(netcdf) bundled(nifti) bundled(nrrdio) bundled(svm-light) freesurfer = 8.2.0-2.fc43 freesurfer(x86-64) = 8.2.0-2.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/csh /usr/bin/perl /usr/bin/python3 /usr/bin/tclsh /usr/bin/tcsh libITKCommon-5.4.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrypt.so.2()(64bit) libcrypt.so.2(XCRYPT_2.0)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libgiftiio.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libitkv3p_netlib-5.4.so.1()(64bit) libitkvnl-5.4.so.1()(64bit) libitkvnl_algo-5.4.so.1()(64bit) liblapack.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmvec.so.1()(64bit) libmvec.so.1(GLIBC_2.22)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/freesurfer-8.2.0-build/BUILDROOT Wrote: /builddir/build/RPMS/freesurfer-8.2.0-2.fc43.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.SeXejW + umask 022 + cd /builddir/build/BUILD/freesurfer-8.2.0-build + test -d /builddir/build/BUILD/freesurfer-8.2.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/freesurfer-8.2.0-build + rm -rf /builddir/build/BUILD/freesurfer-8.2.0-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Finish: rpmbuild freesurfer-8.2.0-2.fc43.src.rpm Finish: build phase for freesurfer-8.2.0-2.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-x86_64-1774820887.469191/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/freesurfer-8.2.0-2.fc43.src.rpm) Config(child) 53 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "freesurfer", "epoch": null, "version": "8.2.0", "release": "2.fc43", "arch": "x86_64" }, { "name": "freesurfer", "epoch": null, "version": "8.2.0", "release": "2.fc43", "arch": "src" } ] } RPMResults finished