Warning: Permanently added '18.209.24.202' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11046563-fedora-44-aarch64 --chroot fedora-44-aarch64 Version: 1.10 PID: 12222 Logging PID: 12224 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11046563, 'buildroot_pkgs': [], 'chroot': 'fedora-44-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-5', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-44-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '11046563-fedora-44-aarch64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3'... Running: git checkout d5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c -- cmd: ['git', 'checkout', 'd5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3 rc: 0 stdout: stderr: Note: switching to 'd5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d5ce74a automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading eigen-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o eigen-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/eigen-3.4.0.tar.gz/md5/4c527a9171d71a72a9d4186e65bea559/eigen-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2.57M 100 2.57M 0 0 26.27M 0 0 INFO: Reading stdout from command: md5sum eigen-3.4.0.tar.gz INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 3.86M 100 3.86M 0 0 16.20M 0 0 INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790633979.509862 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.8 starting (python version = 3.14.5, NVR = mock-6.8-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790633979.509862 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3/mrtrix3.spec) Config(fedora-44-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.8 INFO: Mock Version: 6.8 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-bootstrap-1790633979.509862/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:44 INFO: Pulling image: registry.fedoraproject.org/fedora:44 INFO: Tagging container image as mock-bootstrap-6355f8fd-2a26-44a9-8491-36379082b5ba INFO: Checking that ac33622245bfabcef87211af8b42f7535c65c1231bfac9cfc7881967256eff70 image matches host's architecture INFO: Copy content of container ac33622245bfabcef87211af8b42f7535c65c1231bfac9cfc7881967256eff70 to /var/lib/mock/fedora-44-aarch64-bootstrap-1790633979.509862/root INFO: mounting ac33622245bfabcef87211af8b42f7535c65c1231bfac9cfc7881967256eff70 with podman image mount INFO: image ac33622245bfabcef87211af8b42f7535c65c1231bfac9cfc7881967256eff70 as /var/lib/containers/storage/overlay/cc297b8d649d363007b2df0fbc4b8be8692d1d92e722e9d986cdd883f08cea90/merged INFO: umounting image ac33622245bfabcef87211af8b42f7535c65c1231bfac9cfc7881967256eff70 (/var/lib/containers/storage/overlay/cc297b8d649d363007b2df0fbc4b8be8692d1d92e722e9d986cdd883f08cea90/merged) with podman image umount INFO: Removing image mock-bootstrap-6355f8fd-2a26-44a9-8491-36379082b5ba INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-1790633979.509862/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.aarch64 rpm-sequoia-1.10.3-1.fc44.aarch64 dnf5-5.4.6.0-1.fc44.aarch64 dnf5-plugins-5.4.6.0-1.fc44.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 873.0 KiB/s | 586.7 KiB | 00m01s updates 100% | 13.3 MiB/s | 11.3 MiB | 00m01s fedora 100% | 27.4 MiB/s | 35.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 0:5.3.9-3.fc44 fedora 8.4 MiB bzip2 aarch64 0:1.0.8-23.fc44 fedora 171.1 KiB coreutils aarch64 0:9.10-5.fc44 updates 8.2 MiB cpio aarch64 0:2.15-9.fc44 fedora 1.1 MiB diffutils aarch64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:44-18 updates 20.6 KiB findutils aarch64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk aarch64 0:5.3.2-3.fc44 fedora 2.6 MiB glibc-minimal-langpack aarch64 0:2.43-8.fc44 updates 0.0 B grep aarch64 0:3.12-3.fc44 fedora 1.0 MiB gzip aarch64 0:1.14-2.fc44 fedora 437.5 KiB info aarch64 0:7.2-9.fc44 fedora 421.5 KiB patch aarch64 0:2.8-4.fc44 fedora 262.4 KiB redhat-rpm-config noarch 0:344-2.fc44 updates 183.7 KiB rpm-build aarch64 0:6.0.2-1.fc44 updates 598.7 KiB sed aarch64 0:4.9-7.fc44 fedora 873.1 KiB shadow-utils aarch64 2:4.19.0-7.fc44 updates 4.4 MiB tar aarch64 2:1.35-9.fc44 updates 3.0 MiB unzip aarch64 0:6.0-69.fc44 fedora 533.8 KiB util-linux aarch64 0:2.41.5-1.fc44 updates 6.8 MiB which aarch64 0:2.25-1.fc44 updates 123.6 KiB xz aarch64 1:5.8.2-2.fc44 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc44 updates 3.5 KiB add-determinism aarch64 0:0.7.3-2.fc44 updates 2.0 MiB alternatives aarch64 0:1.33-5.fc44 fedora 90.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs aarch64 0:4.2.1-1.fc44 updates 486.7 KiB binutils aarch64 0:2.46.1-1.fc44 updates 31.5 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc44 updates 1.2 KiB bzip2-libs aarch64 0:1.0.8-23.fc44 fedora 72.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc44 updates 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-1.fc44 fedora 524.0 B coreutils-common aarch64 0:9.10-5.fc44 updates 10.7 MiB crypto-policies noarch 0:20251128-3.git19878fe.fc44 fedora 132.6 KiB curl aarch64 0:8.18.0-10.fc44 updates 464.2 KiB cyrus-sasl-lib aarch64 0:2.1.28-35.fc44 fedora 2.4 MiB debugedit aarch64 0:5.3-2.fc44 updates 320.9 KiB dwz aarch64 0:0.16-3.fc44 fedora 322.4 KiB ed aarch64 0:1.22.5-2.fc44 fedora 157.8 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils aarch64 0:0.196-1.fc44 updates 3.8 MiB elfutils-debuginfod-client aarch64 0:0.196-1.fc44 updates 144.0 KiB elfutils-default-yama-scope noarch 0:0.196-1.fc44 updates 1.8 KiB elfutils-libelf aarch64 0:0.196-1.fc44 updates 1.5 MiB elfutils-libs aarch64 0:0.196-1.fc44 updates 746.6 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc44 fedora 1.9 KiB fedora-gpg-keys noarch 0:44-2 updates 257.6 KiB fedora-release noarch 0:44-18 updates 0.0 B fedora-release-identity-basic noarch 0:44-18 updates 629.0 B fedora-repos noarch 0:44-2 updates 4.9 KiB file aarch64 0:5.46-10.fc44 updates 140.1 KiB file-libs aarch64 0:5.46-10.fc44 updates 11.9 MiB filesystem aarch64 0:3.18-52.fc44 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-52.fc44 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-2.fc44 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal aarch64 0:17.2-4.fc44 updates 13.5 MiB gdbm-libs aarch64 1:1.23-11.fc44 fedora 233.7 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc aarch64 0:2.43-8.fc44 updates 6.4 MiB glibc-common aarch64 0:2.43-8.fc44 updates 1.3 MiB glibc-gconv-extra aarch64 0:2.43-8.fc44 updates 18.5 MiB gmp aarch64 1:6.3.0-5.fc44 fedora 657.9 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc44 updates 3.5 KiB gnulib-l10n noarch 0:20241231-2.fc44 fedora 655.0 KiB gnupg2 aarch64 0:2.4.9-16.fc44 updates 6.4 MiB gnupg2-dirmngr aarch64 0:2.4.9-16.fc44 updates 646.1 KiB gnupg2-gpg-agent aarch64 0:2.4.9-16.fc44 updates 846.9 KiB gnupg2-gpgconf aarch64 0:2.4.9-16.fc44 updates 321.8 KiB gnupg2-keyboxd aarch64 0:2.4.9-16.fc44 updates 233.3 KiB gnupg2-verify aarch64 0:2.4.9-16.fc44 updates 364.3 KiB gnutls aarch64 0:3.8.13-1.fc44 updates 3.7 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs aarch64 0:1.6.2-8.fc44 fedora 92.6 KiB jansson aarch64 0:2.14-4.fc44 fedora 93.0 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c aarch64 0:0.18-8.fc44 fedora 138.5 KiB kernel-srpm-macros noarch 0:1.0-28.fc44 fedora 1.9 KiB keyutils-libs aarch64 0:1.6.3-7.fc44 fedora 98.2 KiB krb5-libs aarch64 0:1.22.2-4.fc44 updates 2.5 MiB libacl aarch64 0:2.4.0-1.fc44 updates 67.9 KiB libarchive aarch64 0:3.8.7-1.fc44 updates 975.5 KiB libassuan aarch64 0:2.5.7-5.fc44 fedora 215.8 KiB libattr aarch64 0:2.6.0-1.fc44 updates 68.4 KiB libblkid aarch64 0:2.41.5-1.fc44 updates 290.4 KiB libbrotli aarch64 0:1.2.0-3.fc44 fedora 909.1 KiB libcap aarch64 0:2.78-1.fc44 updates 508.4 KiB libcap-ng aarch64 0:0.9.6-1.fc44 updates 160.9 KiB libcbor aarch64 0:0.13.0-2.fc44 fedora 139.5 KiB libcom_err aarch64 0:1.47.3-4.fc44 fedora 111.0 KiB libcurl aarch64 0:8.18.0-10.fc44 updates 980.8 KiB libeconf aarch64 0:0.7.9-3.fc44 fedora 80.8 KiB libevent aarch64 0:2.1.13-1.fc44 updates 1.1 MiB libfdisk aarch64 0:2.41.5-1.fc44 updates 418.8 KiB libffi aarch64 0:3.5.2-2.fc44 fedora 155.7 KiB libfido2 aarch64 0:1.16.0-5.fc44 fedora 278.6 KiB libfsverity aarch64 0:1.6-4.fc44 fedora 68.4 KiB libgcc aarch64 0:16.2.1-2.fc44 updates 222.3 KiB libgcrypt aarch64 0:1.12.2-1.fc44 updates 1.2 MiB libgomp aarch64 0:16.2.1-2.fc44 updates 592.9 KiB libgpg-error aarch64 0:1.58-2.fc44 fedora 989.6 KiB libidn2 aarch64 0:2.3.8-3.fc44 fedora 560.4 KiB libksba aarch64 0:1.6.7-5.fc44 fedora 398.3 KiB liblastlog2 aarch64 0:2.41.5-1.fc44 updates 137.8 KiB libmount aarch64 0:2.41.5-1.fc44 updates 420.2 KiB libnghttp2 aarch64 0:1.68.0-5.fc44 updates 197.9 KiB libnghttp3 aarch64 0:1.18.0-1.fc44 updates 206.8 KiB libpfm aarch64 0:4.13.0-20.fc44 updates 251.9 KiB libpkgconf aarch64 0:2.5.1-1.fc44 fedora 134.1 KiB libpsl aarch64 0:0.21.5-7.fc44 fedora 132.3 KiB libselinux aarch64 0:3.11-2.fc44 updates 265.2 KiB libselinux-utils aarch64 0:3.11-2.fc44 updates 1.3 MiB libsemanage aarch64 0:3.11-1.fc44 updates 360.1 KiB libsepol aarch64 0:3.11-1.fc44 updates 809.9 KiB libsmartcols aarch64 0:2.41.5-1.fc44 updates 224.4 KiB libssh aarch64 0:0.12.2-1.fc44 updates 721.3 KiB libssh-config noarch 0:0.12.2-1.fc44 updates 277.0 B libstdc++ aarch64 0:16.2.1-2.fc44 updates 3.0 MiB libtasn1 aarch64 0:4.21.0-1.fc44 fedora 220.7 KiB libtool-ltdl aarch64 0:2.5.4-10.fc44 fedora 93.9 KiB libunistring aarch64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 aarch64 0:1.0.30-1.fc44 updates 179.7 KiB libuuid aarch64 0:2.41.5-1.fc44 updates 69.3 KiB libverto aarch64 0:0.3.2-12.fc44 fedora 69.3 KiB libxcrypt aarch64 0:4.5.2-3.fc44 fedora 273.2 KiB libxml2 aarch64 0:2.12.10-6.fc44 fedora 1.9 MiB libzstd aarch64 0:1.5.7-5.fc44 fedora 860.2 KiB linkdupes aarch64 0:0.7.3-2.fc44 updates 713.7 KiB lua-libs aarch64 0:5.4.8-5.fc44 fedora 329.8 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs aarch64 0:1.10.0-4.fc44 fedora 197.3 KiB mpfr aarch64 0:4.2.2-3.fc44 fedora 755.4 KiB ncurses-base noarch 0:6.6-1.fc44 fedora 329.7 KiB ncurses-libs aarch64 0:6.6-1.fc44 fedora 1.2 MiB nettle aarch64 0:3.10.1-3.fc44 fedora 765.0 KiB ngtcp2 aarch64 0:1.22.1-1.fc44 updates 341.1 KiB ngtcp2-crypto-ossl aarch64 0:1.22.1-1.fc44 updates 67.5 KiB npth aarch64 0:1.8-4.fc44 fedora 93.3 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap aarch64 0:2.6.14-1.fc44 updates 765.0 KiB openssl-libs aarch64 1:3.5.8-1.fc44 updates 7.4 MiB p11-kit aarch64 0:0.26.5-1.fc44 updates 2.8 MiB p11-kit-trust aarch64 0:0.26.5-1.fc44 updates 530.1 KiB package-notes-srpm-macros noarch 0:0.20-1.fc44 updates 1.6 KiB pam-libs aarch64 0:1.7.2-2.fc44 updates 222.7 KiB pcre2 aarch64 0:10.47-1.fc44.1 fedora 714.3 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf aarch64 0:2.5.1-1.fc44 fedora 116.8 KiB pkgconf-m4 noarch 0:2.5.1-1.fc44 fedora 14.3 KiB pkgconf-pkg-config aarch64 0:2.5.1-1.fc44 fedora 990.0 B policycoreutils aarch64 0:3.11-2.fc44 updates 1.5 MiB popt aarch64 0:1.19-10.fc44 fedora 144.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc44 updates 3.4 KiB python-srpm-macros noarch 0:3.14-12.fc44 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc44 updates 472.0 B readline aarch64 0:8.3-4.fc44 fedora 563.5 KiB rpm aarch64 0:6.0.2-1.fc44 updates 3.3 MiB rpm-build-libs aarch64 0:6.0.2-1.fc44 updates 264.1 KiB rpm-libs aarch64 0:6.0.2-1.fc44 updates 995.2 KiB rpm-plugin-selinux aarch64 0:6.0.2-1.fc44 updates 67.9 KiB rpm-sequoia aarch64 0:1.10.3-1.fc44 updates 2.3 MiB rpm-sign-libs aarch64 0:6.0.2-1.fc44 updates 67.7 KiB rust-srpm-macros noarch 0:28.5-1.fc44 updates 5.5 KiB selinux-policy noarch 0:44.10-1.fc44 updates 32.1 KiB selinux-policy-targeted noarch 0:44.10-1.fc44 updates 18.6 MiB setup noarch 0:2.15.0-28.fc44 fedora 724.9 KiB sqlite-libs aarch64 0:3.51.2-2.fc44 updates 1.6 MiB systemd-libs aarch64 0:259.9-1.fc44 updates 2.5 MiB systemd-standalone-sysusers aarch64 0:259.9-1.fc44 updates 329.6 KiB tpm2-tss aarch64 0:4.1.3-9.fc44 fedora 2.1 MiB tree-sitter-srpm-macros noarch 0:0.4.2-2.fc44 fedora 8.3 KiB util-linux-core aarch64 0:2.41.5-1.fc44 updates 2.4 MiB xxhash-libs aarch64 0:0.8.3-4.fc44 fedora 85.8 KiB xz-libs aarch64 1:5.8.2-2.fc44 fedora 265.4 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip aarch64 0:3.0-45.fc44 fedora 762.0 KiB zlib-ng-compat aarch64 0:2.3.3-3.fc44 fedora 133.4 KiB zstd aarch64 0:1.5.7-5.fc44 fedora 562.2 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 186 packages Total size of inbound packages is 67 MiB. Need to download 67 MiB. After this operation, 251 MiB extra will be used (install 251 MiB, remove 0 B). [ 1/186] bzip2-0:1.0.8-23.fc44.aarch64 100% | 4.2 MiB/s | 51.9 KiB | 00m00s [ 2/186] cpio-0:2.15-9.fc44.aarch64 100% | 15.7 MiB/s | 289.7 KiB | 00m00s [ 3/186] diffutils-0:3.12-5.fc44.aarch 100% | 42.5 MiB/s | 391.9 KiB | 00m00s [ 4/186] bash-0:5.3.9-3.fc44.aarch64 100% | 73.6 MiB/s | 1.8 MiB | 00m00s [ 5/186] findutils-1:4.10.0-7.fc44.aar 100% | 67.4 MiB/s | 552.0 KiB | 00m00s [ 6/186] gawk-0:5.3.2-3.fc44.aarch64 100% | 159.6 MiB/s | 1.1 MiB | 00m00s [ 7/186] grep-0:3.12-3.fc44.aarch64 100% | 57.9 MiB/s | 296.3 KiB | 00m00s [ 8/186] gzip-0:1.14-2.fc44.aarch64 100% | 42.2 MiB/s | 172.8 KiB | 00m00s [ 9/186] info-0:7.2-9.fc44.aarch64 100% | 58.3 MiB/s | 179.0 KiB | 00m00s [ 10/186] sed-0:4.9-7.fc44.aarch64 100% | 102.5 MiB/s | 314.8 KiB | 00m00s [ 11/186] patch-0:2.8-4.fc44.aarch64 100% | 21.7 MiB/s | 111.1 KiB | 00m00s [ 12/186] unzip-0:6.0-69.fc44.aarch64 100% | 39.2 MiB/s | 200.9 KiB | 00m00s [ 13/186] xz-1:5.8.2-2.fc44.aarch64 100% | 118.5 MiB/s | 606.6 KiB | 00m00s [ 14/186] coreutils-0:9.10-5.fc44.aarch 100% | 125.0 MiB/s | 1.1 MiB | 00m00s [ 15/186] fedora-release-common-0:44-18 100% | 3.8 MiB/s | 23.6 KiB | 00m00s [ 16/186] glibc-minimal-langpack-0:2.43 100% | 16.3 MiB/s | 83.3 KiB | 00m00s [ 17/186] rpm-build-0:6.0.2-1.fc44.aarc 100% | 42.5 MiB/s | 130.6 KiB | 00m00s [ 18/186] shadow-utils-2:4.19.0-7.fc44. 100% | 184.3 MiB/s | 1.3 MiB | 00m00s [ 19/186] redhat-rpm-config-0:344-2.fc4 100% | 9.5 MiB/s | 78.1 KiB | 00m00s [ 20/186] util-linux-0:2.41.5-1.fc44.aa 100% | 197.6 MiB/s | 1.2 MiB | 00m00s [ 21/186] which-0:2.25-1.fc44.aarch64 100% | 6.8 MiB/s | 41.6 KiB | 00m00s [ 22/186] filesystem-0:3.18-52.fc44.aar 100% | 222.3 MiB/s | 1.3 MiB | 00m00s [ 23/186] ncurses-libs-0:6.6-1.fc44.aar 100% | 45.3 MiB/s | 324.8 KiB | 00m00s [ 24/186] tar-2:1.35-9.fc44.aarch64 100% | 38.0 MiB/s | 855.9 KiB | 00m00s [ 25/186] bzip2-libs-0:1.0.8-23.fc44.aa 100% | 10.1 MiB/s | 41.2 KiB | 00m00s [ 26/186] gmp-1:6.3.0-5.fc44.aarch64 100% | 66.2 MiB/s | 271.0 KiB | 00m00s [ 27/186] readline-0:8.3-4.fc44.aarch64 100% | 72.0 MiB/s | 221.1 KiB | 00m00s [ 28/186] mpfr-0:4.2.2-3.fc44.aarch64 100% | 62.5 MiB/s | 320.0 KiB | 00m00s [ 29/186] pcre2-0:10.47-1.fc44.1.aarch6 100% | 61.1 MiB/s | 250.2 KiB | 00m00s [ 30/186] ed-0:1.22.5-2.fc44.aarch64 100% | 16.3 MiB/s | 83.5 KiB | 00m00s [ 31/186] xz-libs-1:5.8.2-2.fc44.aarch6 100% | 36.3 MiB/s | 111.7 KiB | 00m00s [ 32/186] glibc-0:2.43-8.fc44.aarch64 100% | 216.4 MiB/s | 1.9 MiB | 00m00s [ 33/186] gnome-srpm-macros-0:1.0-1.fc4 100% | 2.8 MiB/s | 8.7 KiB | 00m00s [ 34/186] ansible-srpm-macros-0:1-20.1. 100% | 6.5 MiB/s | 20.1 KiB | 00m00s [ 35/186] cmake-srpm-macros-0:4.3.0-1.f 100% | 5.1 MiB/s | 10.4 KiB | 00m00s [ 36/186] dwz-0:0.16-3.fc44.aarch64 100% | 64.1 MiB/s | 131.3 KiB | 00m00s [ 37/186] coreutils-common-0:9.10-5.fc4 100% | 68.8 MiB/s | 2.1 MiB | 00m00s [ 38/186] efi-srpm-macros-0:6-6.fc44.no 100% | 3.7 MiB/s | 22.6 KiB | 00m00s [ 39/186] erlang-srpm-macros-0:0.3.11-1 100% | 4.9 MiB/s | 10.0 KiB | 00m00s [ 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66/186] libblkid-0:2.41.5-1.fc44.aarc 100% | 39.8 MiB/s | 122.4 KiB | 00m00s [ 67/186] glibc-common-0:2.43-8.fc44.aa 100% | 5.1 MiB/s | 358.2 KiB | 00m00s [ 68/186] libfdisk-0:2.41.5-1.fc44.aarc 100% | 75.7 MiB/s | 155.0 KiB | 00m00s [ 69/186] liblastlog2-0:2.41.5-1.fc44.a 100% | 11.8 MiB/s | 24.2 KiB | 00m00s [ 70/186] libmount-0:2.41.5-1.fc44.aarc 100% | 52.0 MiB/s | 159.7 KiB | 00m00s [ 71/186] libuuid-0:2.41.5-1.fc44.aarch 100% | 12.9 MiB/s | 26.4 KiB | 00m00s [ 72/186] libsmartcols-0:2.41.5-1.fc44. 100% | 27.0 MiB/s | 83.0 KiB | 00m00s [ 73/186] util-linux-core-0:2.41.5-1.fc 100% | 176.7 MiB/s | 542.9 KiB | 00m00s [ 74/186] zlib-ng-compat-0:2.3.3-3.fc44 100% | 17.7 MiB/s | 72.4 KiB | 00m00s [ 75/186] ncurses-base-0:6.6-1.fc44.noa 100% | 21.5 MiB/s | 88.0 KiB | 00m00s [ 76/186] gnulib-l10n-0:20241231-2.fc44 100% | 73.4 MiB/s | 150.3 KiB | 00m00s [ 77/186] pcre2-syntax-0:10.47-1.fc44.1 100% | 32.2 MiB/s | 164.7 KiB | 00m00s [ 78/186] pkgconf-0:2.5.1-1.fc44.aarch6 100% | 15.7 MiB/s | 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audit-libs-0:4.2.1-1.fc44.aar 100% | 15.4 MiB/s | 141.8 KiB | 00m00s [105/186] libcap-ng-0:0.9.6-1.fc44.aarc 100% | 4.3 MiB/s | 35.1 KiB | 00m00s [106/186] libsemanage-0:3.11-1.fc44.aar 100% | 58.3 MiB/s | 119.3 KiB | 00m00s [107/186] gnupg2-0:2.4.9-16.fc44.aarch6 100% | 230.2 MiB/s | 1.6 MiB | 00m00s [108/186] pam-libs-0:1.7.2-2.fc44.aarch 100% | 3.7 MiB/s | 56.5 KiB | 00m00s [109/186] gnupg2-dirmngr-0:2.4.9-16.fc4 100% | 64.2 MiB/s | 262.9 KiB | 00m00s [110/186] gnupg2-gpg-agent-0:2.4.9-16.f 100% | 64.9 MiB/s | 265.8 KiB | 00m00s [111/186] gpgverify-0:2.2-4.fc44.noarch 100% | 1.1 MiB/s | 11.2 KiB | 00m00s [112/186] gnupg2-gpgconf-0:2.4.9-16.fc4 100% | 27.7 MiB/s | 113.5 KiB | 00m00s [113/186] gnupg2-keyboxd-0:2.4.9-16.fc4 100% | 22.1 MiB/s | 90.6 KiB | 00m00s [114/186] gnupg2-verify-0:2.4.9-16.fc44 100% | 53.0 MiB/s | 162.8 KiB | 00m00s [115/186] libassuan-0:2.5.7-5.fc44.aarc 100% | 16.3 MiB/s | 66.9 KiB | 00m00s [116/186] libgpg-error-0:1.58-2.fc44.aa 100% | 121.3 MiB/s | 248.3 KiB 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| 158.4 MiB/s | 973.3 KiB | 00m00s [143/186] libffi-0:3.5.2-2.fc44.aarch64 100% | 7.7 MiB/s | 39.6 KiB | 00m00s [144/186] libgcrypt-0:1.12.2-1.fc44.aar 100% | 65.4 MiB/s | 535.9 KiB | 00m00s [145/186] gnutls-0:3.8.13-1.fc44.aarch6 100% | 144.6 MiB/s | 1.3 MiB | 00m00s [146/186] libidn2-0:2.3.8-3.fc44.aarch6 100% | 17.0 MiB/s | 174.6 KiB | 00m00s [147/186] libtasn1-0:4.21.0-1.fc44.aarc 100% | 9.0 MiB/s | 73.4 KiB | 00m00s [148/186] nettle-0:3.10.1-3.fc44.aarch6 100% | 138.5 MiB/s | 425.5 KiB | 00m00s [149/186] openldap-0:2.6.14-1.fc44.aarc 100% | 123.0 MiB/s | 251.8 KiB | 00m00s [150/186] libunistring-0:1.1-11.fc44.aa 100% | 87.6 MiB/s | 538.3 KiB | 00m00s [151/186] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 188.7 MiB/s | 772.9 KiB | 00m00s [152/186] libtool-ltdl-0:2.5.4-10.fc44. 100% | 8.7 MiB/s | 35.6 KiB | 00m00s [153/186] gdbm-libs-1:1.23-11.fc44.aarc 100% | 18.3 MiB/s | 56.3 KiB | 00m00s [154/186] elfutils-default-yama-scope-0 100% | 3.7 MiB/s | 11.3 KiB | 00m00s [155/186] fedora-repos-0:44-2.noarch 100% | 1.5 MiB/s | 9.1 KiB | 00m00s [156/186] libpfm-0:4.13.0-20.fc44.aarch 100% | 8.6 MiB/s | 53.0 KiB | 00m00s [157/186] fedora-gpg-keys-0:44-2.noarch 100% | 14.1 MiB/s | 187.6 KiB | 00m00s [158/186] libevent-0:2.1.13-1.fc44.aarc 100% | 66.6 MiB/s | 272.6 KiB | 00m00s [159/186] p11-kit-0:0.26.5-1.fc44.aarch 100% | 43.5 MiB/s | 534.2 KiB | 00m00s [160/186] fedora-release-0:44-18.noarch 100% | 6.1 MiB/s | 12.5 KiB | 00m00s [161/186] p11-kit-trust-0:0.26.5-1.fc44 100% | 15.1 MiB/s | 139.4 KiB | 00m00s [162/186] systemd-standalone-sysusers-0 100% | 68.9 MiB/s | 141.2 KiB | 00m00s [163/186] fedora-release-identity-basic 100% | 12.9 MiB/s | 13.2 KiB | 00m00s [164/186] xxhash-libs-0:0.8.3-4.fc44.aa 100% | 16.8 MiB/s | 34.5 KiB | 00m00s [165/186] libcurl-0:8.18.0-10.fc44.aarc 100% | 138.0 MiB/s | 424.0 KiB | 00m00s [166/186] libssh-0:0.12.2-1.fc44.aarch6 100% | 90.2 MiB/s | 277.1 KiB | 00m00s [167/186] ngtcp2-0:1.22.1-1.fc44.aarch6 100% | 10.3 MiB/s | 147.2 KiB | 00m00s [168/186] libbrotli-0:1.2.0-3.fc44.aarc 100% | 31.0 MiB/s | 348.7 KiB | 00m00s [169/186] libpsl-0:0.21.5-7.fc44.aarch6 100% | 6.3 MiB/s | 64.9 KiB | 00m00s [170/186] gdb-minimal-0:17.2-4.fc44.aar 100% | 76.1 MiB/s | 4.3 MiB | 00m00s [171/186] libssh-config-0:0.12.2-1.fc44 100% | 893.9 KiB/s | 8.9 KiB | 00m00s [172/186] libnghttp3-0:1.18.0-1.fc44.aa 100% | 1.3 MiB/s | 70.1 KiB | 00m00s [173/186] libfido2-0:1.16.0-5.fc44.aarc 100% | 47.0 MiB/s | 96.2 KiB | 00m00s [174/186] publicsuffix-list-dafsa-0:202 100% | 29.4 MiB/s | 60.3 KiB | 00m00s [175/186] libcbor-0:0.13.0-2.fc44.aarch 100% | 16.8 MiB/s | 34.4 KiB | 00m00s [176/186] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 12.7 MiB/s | 26.0 KiB | 00m00s [177/186] selinux-policy-0:44.10-1.fc44 100% | 12.9 MiB/s | 26.4 KiB | 00m00s [178/186] rpm-plugin-selinux-0:6.0.2-1. 100% | 8.3 MiB/s | 17.1 KiB | 00m00s [179/186] policycoreutils-0:3.11-2.fc44 100% | 63.6 MiB/s | 260.6 KiB | 00m00s [180/186] libselinux-utils-0:3.11-2.fc4 100% | 30.1 MiB/s | 123.4 KiB | 00m00s [181/186] krb5-libs-0:1.22.2-4.fc44.aar 100% | 185.9 MiB/s | 761.3 KiB | 00m00s [182/186] keyutils-libs-0:1.6.3-7.fc44. 100% | 5.1 MiB/s | 31.5 KiB | 00m00s [183/186] libcom_err-0:1.47.3-4.fc44.aa 100% | 3.8 MiB/s | 27.0 KiB | 00m00s [184/186] libverto-0:0.3.2-12.fc44.aarc 100% | 4.0 MiB/s | 20.5 KiB | 00m00s [185/186] libnghttp2-0:1.68.0-5.fc44.aa 100% | 6.6 MiB/s | 74.0 KiB | 00m00s [186/186] selinux-policy-targeted-0:44. 100% | 102.8 MiB/s | 6.8 MiB | 00m00s -------------------------------------------------------------------------------- [186/186] Total 100% | 128.7 MiB/s | 66.7 MiB | 00m01s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. [ 1/188] Verify package files 100% | 778.0 B/s | 186.0 B | 00m00s [ 2/188] Prepare transaction 100% | 2.5 KiB/s | 186.0 B | 00m00s [ 3/188] Installing libgcc-0:16.2.1-2. 100% | 109.4 MiB/s | 224.0 KiB | 00m00s [ 4/188] Installing publicsuffix-list- 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [ 5/188] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/188] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0 B | 00m00s [ 7/188] Installing fedora-gpg-keys-0: 100% | 31.5 MiB/s | 355.3 KiB | 00m00s [ 8/188] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/188] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 10/188] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/188] Installing setup-0:2.15.0-28. 100% | 42.0 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/188] Installing filesystem-0:3.18- 100% | 2.0 MiB/s | 212.8 KiB | 00m00s [ 13/188] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [ 14/188] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 15/188] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 16/188] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/188] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 18/188] Installing coreutils-common-0 100% | 314.3 MiB/s | 10.7 MiB | 00m00s [ 19/188] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 20/188] Installing ncurses-base-0:6.6 100% | 57.8 MiB/s | 355.3 KiB | 00m00s [ 21/188] Installing bash-0:5.3.9-3.fc4 100% | 216.2 MiB/s | 8.4 MiB | 00m00s [ 22/188] Installing glibc-common-0:2.4 100% | 60.3 MiB/s | 1.3 MiB | 00m00s [ 23/188] Installing glibc-gconv-extra- 100% | 396.5 MiB/s | 18.6 MiB | 00m00s [ 24/188] Installing glibc-0:2.43-8.fc4 100% | 152.0 MiB/s | 6.4 MiB | 00m00s [ 25/188] Installing ncurses-libs-0:6.6 100% | 249.2 MiB/s | 1.2 MiB | 00m00s [ 26/188] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/188] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [ 28/188] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 29/188] Installing libgpg-error-0:1.5 100% | 48.6 MiB/s | 995.5 KiB | 00m00s [ 30/188] Installing libstdc++-0:16.2.1 100% | 330.1 MiB/s | 3.0 MiB | 00m00s [ 31/188] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 32/188] Installing libgcrypt-0:1.12.2 100% | 240.0 MiB/s | 1.2 MiB | 00m00s [ 33/188] Installing readline-0:8.3-4.f 100% | 276.2 MiB/s | 565.6 KiB | 00m00s [ 34/188] Installing gmp-1:6.3.0-5.fc44 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 35/188] Installing xz-libs-1:5.8.2-2. 100% | 260.2 MiB/s | 266.5 KiB | 00m00s [ 36/188] Installing libuuid-0:2.41.5-1 100% | 68.8 MiB/s | 70.4 KiB | 00m00s [ 37/188] Installing libzstd-0:1.5.7-5. 100% | 280.4 MiB/s | 861.5 KiB | 00m00s [ 38/188] Installing elfutils-libelf-0: 100% | 364.6 MiB/s | 1.5 MiB | 00m00s [ 39/188] Installing libacl-0:2.4.0-1.f 100% | 67.1 MiB/s | 68.8 KiB | 00m00s [ 40/188] Installing popt-0:1.19-10.fc4 100% | 49.2 MiB/s | 151.3 KiB | 00m00s [ 41/188] Installing systemd-libs-0:259 100% | 307.7 MiB/s | 2.5 MiB | 00m00s [ 42/188] Installing npth-0:1.8-4.fc44. 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 43/188] Installing libblkid-0:2.41.5- 100% | 284.6 MiB/s | 291.5 KiB | 00m00s [ 44/188] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB | 00m00s [ 45/188] Installing libsepol-0:3.11-1. 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 46/188] Installing sqlite-libs-0:3.51 100% | 261.2 MiB/s | 1.6 MiB | 00m00s [ 47/188] Installing gnupg2-gpgconf-0:2 100% | 18.6 MiB/s | 323.9 KiB | 00m00s [ 48/188] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.7 KiB | 00m00s [ 49/188] Installing libselinux-0:3.11- 100% | 130.1 MiB/s | 266.4 KiB | 00m00s [ 50/188] Installing grep-0:3.12-3.fc44 100% | 49.4 MiB/s | 1.0 MiB | 00m00s [ 51/188] Installing sed-0:4.9-7.fc44.a 100% | 43.0 MiB/s | 881.3 KiB | 00m00s [ 52/188] Installing findutils-1:4.10.0 100% | 83.5 MiB/s | 1.9 MiB | 00m00s [ 53/188] Installing json-c-0:0.18-8.fc 100% | 136.5 MiB/s | 139.7 KiB | 00m00s [ 54/188] Installing libtasn1-0:4.21.0- 100% | 217.3 MiB/s | 222.5 KiB | 00m00s [ 55/188] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 56/188] Installing libidn2-0:2.3.8-3. 100% | 55.3 MiB/s | 566.6 KiB | 00m00s [ 57/188] Installing crypto-policies-0: 100% | 22.0 MiB/s | 157.7 KiB | 00m00s [ 58/188] Installing xz-1:5.8.2-2.fc44. 100% | 60.3 MiB/s | 1.4 MiB | 00m00s [ 59/188] Installing libmount-0:2.41.5- 100% | 205.7 MiB/s | 421.3 KiB | 00m00s [ 60/188] Installing gnupg2-verify-0:2. 100% | 21.0 MiB/s | 365.7 KiB | 00m00s [ 61/188] Installing dwz-0:0.16-3.fc44. 100% | 19.8 MiB/s | 323.8 KiB | 00m00s [ 62/188] Installing mpfr-0:4.2.2-3.fc4 100% | 246.4 MiB/s | 757.1 KiB | 00m00s [ 63/188] Installing gawk-0:5.3.2-3.fc4 100% | 107.5 MiB/s | 2.6 MiB | 00m00s [ 64/188] Installing libksba-0:1.6.7-5. 100% | 195.7 MiB/s | 400.8 KiB | 00m00s [ 65/188] Installing unzip-0:6.0-69.fc4 100% | 30.9 MiB/s | 537.3 KiB | 00m00s [ 66/188] Installing file-libs-0:5.46-1 100% | 594.2 MiB/s | 11.9 MiB | 00m00s [ 67/188] Installing file-0:5.46-10.fc4 100% | 8.6 MiB/s | 141.6 KiB | 00m00s [ 68/188] Installing diffutils-0:3.12-5 100% | 73.8 MiB/s | 1.6 MiB | 00m00s [ 69/188] Installing libeconf-0:0.7.9-3 100% | 80.5 MiB/s | 82.5 KiB | 00m00s [ 70/188] Installing libsmartcols-0:2.4 100% | 220.2 MiB/s | 225.5 KiB | 00m00s [ 71/188] Installing lua-libs-0:5.4.8-5 100% | 161.7 MiB/s | 331.3 KiB | 00m00s [ 72/188] Installing libattr-0:2.6.0-1. 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 73/188] Installing libcap-ng-0:0.9.6- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 74/188] Installing audit-libs-0:4.2.1 100% | 238.9 MiB/s | 489.3 KiB | 00m00s [ 75/188] Installing pam-libs-0:1.7.2-2 100% | 219.7 MiB/s | 225.0 KiB | 00m00s [ 76/188] Installing libcap-0:2.78-1.fc 100% | 29.5 MiB/s | 513.5 KiB | 00m00s [ 77/188] Installing libsemanage-0:3.11 100% | 176.7 MiB/s | 361.8 KiB | 00m00s [ 78/188] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 91.6 KiB | 00m00s [ 79/188] Installing libffi-0:3.5.2-2.f 100% | 153.4 MiB/s | 157.1 KiB | 00m00s [ 80/188] Installing p11-kit-0:0.26.5-1 100% | 103.7 MiB/s | 2.8 MiB | 00m00s [ 81/188] Installing p11-kit-trust-0:0. 100% | 22.6 MiB/s | 531.9 KiB | 00m00s [ 82/188] Installing ngtcp2-0:1.22.1-1. 100% | 167.3 MiB/s | 342.7 KiB | 00m00s [ 83/188] Installing openssl-libs-1:3.5 100% | 322.7 MiB/s | 7.4 MiB | 00m00s [ 84/188] Installing coreutils-0:9.10-5 100% | 191.2 MiB/s | 8.2 MiB | 00m00s [ 85/188] Installing ca-certificates-0: 100% | 1.5 MiB/s | 2.5 MiB | 00m02s [ 86/188] Installing gzip-0:1.14-2.fc44 100% | 22.8 MiB/s | 443.0 KiB | 00m00s [ 87/188] Installing libfsverity-0:1.6- 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 88/188] Installing rpm-sequoia-0:1.10 100% | 286.5 MiB/s | 2.3 MiB | 00m00s [ 89/188] Installing libevent-0:2.1.13- 100% | 271.7 MiB/s | 1.1 MiB | 00m00s [ 90/188] Installing ngtcp2-crypto-ossl 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 91/188] Installing liblastlog2-0:2.41 100% | 22.8 MiB/s | 139.8 KiB | 00m00s [ 92/188] Installing util-linux-core-0: 100% | 98.6 MiB/s | 2.5 MiB | 00m00s [ 93/188] Installing zip-0:3.0-45.fc44. 100% | 41.5 MiB/s | 765.8 KiB | 00m00s [ 94/188] Installing gnupg2-keyboxd-0:2 100% | 38.2 MiB/s | 234.5 KiB | 00m00s [ 95/188] Installing libpsl-0:0.21.5-7. 100% | 130.3 MiB/s | 133.4 KiB | 00m00s [ 96/188] Installing tar-2:1.35-9.fc44. 100% | 115.6 MiB/s | 3.0 MiB | 00m00s [ 97/188] Installing linkdupes-0:0.7.3- 100% | 38.8 MiB/s | 715.1 KiB | 00m00s [ 98/188] Installing libselinux-utils-0 100% | 67.8 MiB/s | 1.4 MiB | 00m00s [ 99/188] Installing systemd-standalone 100% | 19.0 MiB/s | 330.2 KiB | 00m00s [100/188] Installing rpm-libs-0:6.0.2-1 100% | 243.3 MiB/s | 996.7 KiB | 00m00s [101/188] Installing libfdisk-0:2.41.5- 100% | 136.7 MiB/s | 419.9 KiB | 00m00s [102/188] Installing util-linux-0:2.41. 100% | 145.9 MiB/s | 6.9 MiB | 00m00s [103/188] Installing policycoreutils-0: 100% | 46.3 MiB/s | 1.5 MiB | 00m00s [104/188] Installing selinux-policy-0:4 100% | 1.5 MiB/s | 34.5 KiB | 00m00s [105/188] Installing selinux-policy-tar 100% | 140.6 MiB/s | 14.9 MiB | 00m00s [106/188] Installing libusb1-0:1.0.30-1 100% | 19.7 MiB/s | 181.4 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/188] Installing tpm2-tss-0:4.1.3-9 100% | 269.6 MiB/s | 2.2 MiB | 00m00s [108/188] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [109/188] Installing gnupg2-gpg-agent-0 100% | 33.2 MiB/s | 850.9 KiB | 00m00s [110/188] Installing zstd-0:1.5.7-5.fc4 100% | 29.1 MiB/s | 565.8 KiB | 00m00s [111/188] Installing libxml2-0:2.12.10- 100% | 86.0 MiB/s | 1.9 MiB | 00m00s [112/188] Installing nettle-0:3.10.1-3. 100% | 250.1 MiB/s | 768.2 KiB | 00m00s [113/188] Installing gnutls-0:3.8.13-1. 100% | 309.1 MiB/s | 3.7 MiB | 00m00s [114/188] Installing bzip2-0:1.0.8-23.f 100% | 10.1 MiB/s | 175.6 KiB | 00m00s [115/188] Installing add-determinism-0: 100% | 89.6 MiB/s | 2.0 MiB | 00m00s [116/188] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [117/188] Installing cpio-0:2.15-9.fc44 100% | 52.2 MiB/s | 1.1 MiB | 00m00s [118/188] Installing ed-0:1.22.5-2.fc44 100% | 9.2 MiB/s | 160.1 KiB | 00m00s [119/188] Installing patch-0:2.8-4.fc44 100% | 15.2 MiB/s | 263.9 KiB | 00m00s [120/188] Installing libpkgconf-0:2.5.1 100% | 132.0 MiB/s | 135.2 KiB | 00m00s [121/188] Installing pkgconf-0:2.5.1-1. 100% | 6.9 MiB/s | 119.3 KiB | 00m00s [122/188] Installing pkgconf-pkg-config 100% | 110.8 KiB/s | 1.8 KiB | 00m00s [123/188] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB | 00m00s [124/188] Installing jansson-0:2.14-4.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [125/188] Installing lz4-libs-0:1.10.0- 100% | 193.7 MiB/s | 198.4 KiB | 00m00s [126/188] Installing libarchive-0:3.8.7 100% | 238.7 MiB/s | 977.5 KiB | 00m00s [127/188] Installing libtool-ltdl-0:2.5 100% | 92.8 MiB/s | 95.0 KiB | 00m00s [128/188] Installing gdbm-libs-1:1.23-1 100% | 229.9 MiB/s | 235.4 KiB | 00m00s [129/188] Installing cyrus-sasl-lib-0:2 100% | 105.1 MiB/s | 2.4 MiB | 00m00s [130/188] Installing openldap-0:2.6.14- 100% | 187.7 MiB/s | 768.8 KiB | 00m00s [131/188] Installing gnupg2-dirmngr-0:2 100% | 26.4 MiB/s | 648.9 KiB | 00m00s [132/188] Installing gnupg2-0:2.4.9-16. 100% | 174.5 MiB/s | 6.5 MiB | 00m00s [133/188] Installing rpm-sign-libs-0:6. 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [134/188] Installing gpgverify-0:2.2-4. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [135/188] Installing libpfm-0:4.13.0-20 100% | 247.4 MiB/s | 253.3 KiB | 00m00s [136/188] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [137/188] Installing libnghttp3-0:1.18. 100% | 203.3 MiB/s | 208.2 KiB | 00m00s [138/188] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.3 KiB | 00m00s [139/188] Installing libcbor-0:0.13.0-2 100% | 137.6 MiB/s | 140.9 KiB | 00m00s [140/188] Installing libfido2-0:1.16.0- 100% | 136.8 MiB/s | 280.1 KiB | 00m00s [141/188] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.6 KiB | 00m00s [142/188] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.1 KiB | 00m00s [143/188] Installing libverto-0:0.3.2-1 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [144/188] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s | 2.5 MiB | 00m00s [145/188] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB | 00m00s [146/188] Installing libnghttp2-0:1.68. 100% | 194.4 MiB/s | 199.1 KiB | 00m00s [147/188] Installing libcurl-0:8.18.0-1 100% | 239.7 MiB/s | 981.9 KiB | 00m00s [148/188] Installing curl-0:8.18.0-10.f 100% | 16.9 MiB/s | 466.9 KiB | 00m00s [149/188] Installing rpm-0:6.0.2-1.fc44 100% | 66.5 MiB/s | 2.8 MiB | 00m00s [150/188] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [151/188] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [152/188] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/188] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [154/188] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [155/188] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [156/188] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [157/188] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [158/188] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.5 KiB | 00m00s [159/188] Installing elfutils-debuginfo 100% | 7.9 MiB/s | 146.1 KiB | 00m00s [160/188] Installing elfutils-0:0.196-1 100% | 135.0 MiB/s | 3.8 MiB | 00m00s [161/188] Installing binutils-0:2.46.1- 100% | 297.1 MiB/s | 31.5 MiB | 00m00s [162/188] Installing gdb-minimal-0:17.2 100% | 246.1 MiB/s | 13.5 MiB | 00m00s [163/188] Installing debugedit-0:5.3-2. 100% | 18.6 MiB/s | 324.2 KiB | 00m00s [164/188] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 264.9 KiB | 00m00s [165/188] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [166/188] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [167/188] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [168/188] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [169/188] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [170/188] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [171/188] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [172/188] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [173/188] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [174/188] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [175/188] Installing gnome-srpm-macros- 100% | 4.0 MiB/s | 4.1 KiB | 00m00s [176/188] Installing redhat-rpm-config- 100% | 92.7 MiB/s | 189.9 KiB | 00m00s [177/188] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [178/188] Installing rpm-build-0:6.0.2- 100% | 23.7 MiB/s | 607.8 KiB | 00m00s [179/188] Installing erlang-srpm-macros 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [180/188] Installing pyproject-srpm-mac 100% | 3.9 MiB/s | 4.0 KiB | 00m00s [181/188] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [182/188] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [183/188] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [184/188] Installing R-srpm-macros-0:1. 100% | 4.3 MiB/s | 4.4 KiB | 00m00s [185/188] Installing rpm-plugin-selinux 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [186/188] Installing which-0:2.25-1.fc4 100% | 6.5 MiB/s | 125.8 KiB | 00m00s [187/188] Installing shadow-utils-2:4.1 100% | 109.6 MiB/s | 4.5 MiB | 00m00s [188/188] Installing info-0:7.2-9.fc44. 100% | 50.6 KiB/s | 421.9 KiB | 00m08s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc44.noarch add-determinism-0.7.3-2.fc44.aarch64 alternatives-1.33-5.fc44.aarch64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.2.1-1.fc44.aarch64 bash-5.3.9-3.fc44.aarch64 binutils-2.46.1-1.fc44.aarch64 build-reproducibility-srpm-macros-0.7.3-2.fc44.noarch bzip2-1.0.8-23.fc44.aarch64 bzip2-libs-1.0.8-23.fc44.aarch64 ca-certificates-2026.2.90_v9.0.317-1.fc44.noarch cmake-srpm-macros-4.3.0-1.fc44.noarch coreutils-9.10-5.fc44.aarch64 coreutils-common-9.10-5.fc44.aarch64 cpio-2.15-9.fc44.aarch64 crypto-policies-20251128-3.git19878fe.fc44.noarch curl-8.18.0-10.fc44.aarch64 cyrus-sasl-lib-2.1.28-35.fc44.aarch64 debugedit-5.3-2.fc44.aarch64 diffutils-3.12-5.fc44.aarch64 dwz-0.16-3.fc44.aarch64 ed-1.22.5-2.fc44.aarch64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.196-1.fc44.aarch64 elfutils-debuginfod-client-0.196-1.fc44.aarch64 elfutils-default-yama-scope-0.196-1.fc44.noarch elfutils-libelf-0.196-1.fc44.aarch64 elfutils-libs-0.196-1.fc44.aarch64 erlang-srpm-macros-0.3.11-1.fc44.noarch fedora-gpg-keys-44-2.noarch fedora-release-44-18.noarch fedora-release-common-44-18.noarch fedora-release-identity-basic-44-18.noarch fedora-repos-44-2.noarch file-5.46-10.fc44.aarch64 file-libs-5.46-10.fc44.aarch64 filesystem-3.18-52.fc44.aarch64 filesystem-srpm-macros-3.18-52.fc44.noarch findutils-4.10.0-7.fc44.aarch64 fonts-srpm-macros-5.0.0-2.fc44.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.3.2-3.fc44.aarch64 gdb-minimal-17.2-4.fc44.aarch64 gdbm-libs-1.23-11.fc44.aarch64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43-8.fc44.aarch64 glibc-common-2.43-8.fc44.aarch64 glibc-gconv-extra-2.43-8.fc44.aarch64 glibc-minimal-langpack-2.43-8.fc44.aarch64 gmp-6.3.0-5.fc44.aarch64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc44.noarch gnulib-l10n-20241231-2.fc44.noarch gnupg2-2.4.9-16.fc44.aarch64 gnupg2-dirmngr-2.4.9-16.fc44.aarch64 gnupg2-gpg-agent-2.4.9-16.fc44.aarch64 gnupg2-gpgconf-2.4.9-16.fc44.aarch64 gnupg2-keyboxd-2.4.9-16.fc44.aarch64 gnupg2-verify-2.4.9-16.fc44.aarch64 gnutls-3.8.13-1.fc44.aarch64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.aarch64 gzip-1.14-2.fc44.aarch64 ima-evm-utils-libs-1.6.2-8.fc44.aarch64 info-7.2-9.fc44.aarch64 jansson-2.14-4.fc44.aarch64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.aarch64 kernel-srpm-macros-1.0-28.fc44.noarch keyutils-libs-1.6.3-7.fc44.aarch64 krb5-libs-1.22.2-4.fc44.aarch64 libacl-2.4.0-1.fc44.aarch64 libarchive-3.8.7-1.fc44.aarch64 libassuan-2.5.7-5.fc44.aarch64 libattr-2.6.0-1.fc44.aarch64 libblkid-2.41.5-1.fc44.aarch64 libbrotli-1.2.0-3.fc44.aarch64 libcap-2.78-1.fc44.aarch64 libcap-ng-0.9.6-1.fc44.aarch64 libcbor-0.13.0-2.fc44.aarch64 libcom_err-1.47.3-4.fc44.aarch64 libcurl-8.18.0-10.fc44.aarch64 libeconf-0.7.9-3.fc44.aarch64 libevent-2.1.13-1.fc44.aarch64 libfdisk-2.41.5-1.fc44.aarch64 libffi-3.5.2-2.fc44.aarch64 libfido2-1.16.0-5.fc44.aarch64 libfsverity-1.6-4.fc44.aarch64 libgcc-16.2.1-2.fc44.aarch64 libgcrypt-1.12.2-1.fc44.aarch64 libgomp-16.2.1-2.fc44.aarch64 libgpg-error-1.58-2.fc44.aarch64 libidn2-2.3.8-3.fc44.aarch64 libksba-1.6.7-5.fc44.aarch64 liblastlog2-2.41.5-1.fc44.aarch64 libmount-2.41.5-1.fc44.aarch64 libnghttp2-1.68.0-5.fc44.aarch64 libnghttp3-1.18.0-1.fc44.aarch64 libpfm-4.13.0-20.fc44.aarch64 libpkgconf-2.5.1-1.fc44.aarch64 libpsl-0.21.5-7.fc44.aarch64 libselinux-3.11-2.fc44.aarch64 libselinux-utils-3.11-2.fc44.aarch64 libsemanage-3.11-1.fc44.aarch64 libsepol-3.11-1.fc44.aarch64 libsmartcols-2.41.5-1.fc44.aarch64 libssh-0.12.2-1.fc44.aarch64 libssh-config-0.12.2-1.fc44.noarch libstdc++-16.2.1-2.fc44.aarch64 libtasn1-4.21.0-1.fc44.aarch64 libtool-ltdl-2.5.4-10.fc44.aarch64 libunistring-1.1-11.fc44.aarch64 libusb1-1.0.30-1.fc44.aarch64 libuuid-2.41.5-1.fc44.aarch64 libverto-0.3.2-12.fc44.aarch64 libxcrypt-4.5.2-3.fc44.aarch64 libxml2-2.12.10-6.fc44.aarch64 libzstd-1.5.7-5.fc44.aarch64 linkdupes-0.7.3-2.fc44.aarch64 lua-libs-5.4.8-5.fc44.aarch64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.aarch64 mpfr-4.2.2-3.fc44.aarch64 ncurses-base-6.6-1.fc44.noarch ncurses-libs-6.6-1.fc44.aarch64 nettle-3.10.1-3.fc44.aarch64 ngtcp2-1.22.1-1.fc44.aarch64 ngtcp2-crypto-ossl-1.22.1-1.fc44.aarch64 npth-1.8-4.fc44.aarch64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.14-1.fc44.aarch64 openssl-libs-3.5.8-1.fc44.aarch64 p11-kit-0.26.5-1.fc44.aarch64 p11-kit-trust-0.26.5-1.fc44.aarch64 package-notes-srpm-macros-0.20-1.fc44.noarch pam-libs-1.7.2-2.fc44.aarch64 patch-2.8-4.fc44.aarch64 pcre2-10.47-1.fc44.1.aarch64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc44.aarch64 pkgconf-m4-2.5.1-1.fc44.noarch pkgconf-pkg-config-2.5.1-1.fc44.aarch64 policycoreutils-3.11-2.fc44.aarch64 popt-1.19-10.fc44.aarch64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.23.2-1.fc44.noarch python-srpm-macros-3.14-12.fc44.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.2-1.fc44.noarch readline-8.3-4.fc44.aarch64 redhat-rpm-config-344-2.fc44.noarch rpm-6.0.2-1.fc44.aarch64 rpm-build-6.0.2-1.fc44.aarch64 rpm-build-libs-6.0.2-1.fc44.aarch64 rpm-libs-6.0.2-1.fc44.aarch64 rpm-plugin-selinux-6.0.2-1.fc44.aarch64 rpm-sequoia-1.10.3-1.fc44.aarch64 rpm-sign-libs-6.0.2-1.fc44.aarch64 rust-srpm-macros-28.5-1.fc44.noarch sed-4.9-7.fc44.aarch64 selinux-policy-44.10-1.fc44.noarch selinux-policy-targeted-44.10-1.fc44.noarch setup-2.15.0-28.fc44.noarch shadow-utils-4.19.0-7.fc44.aarch64 sqlite-libs-3.51.2-2.fc44.aarch64 systemd-libs-259.9-1.fc44.aarch64 systemd-standalone-sysusers-259.9-1.fc44.aarch64 tar-1.35-9.fc44.aarch64 tpm2-tss-4.1.3-9.fc44.aarch64 tree-sitter-srpm-macros-0.4.2-2.fc44.noarch unzip-6.0-69.fc44.aarch64 util-linux-2.41.5-1.fc44.aarch64 util-linux-core-2.41.5-1.fc44.aarch64 which-2.25-1.fc44.aarch64 xxhash-libs-0.8.3-4.fc44.aarch64 xz-5.8.2-2.fc44.aarch64 xz-libs-5.8.2-2.fc44.aarch64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.aarch64 zlib-ng-compat-2.3.3-3.fc44.aarch64 zstd-1.5.7-5.fc44.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790553600 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-5.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-aarch64-1790633979.509862/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-9v2_6iz0/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-5.fc44.src.rpm) Config(fedora-44-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-bootstrap-1790633979.509862/root. INFO: reusing tmpfs at /var/lib/mock/fedora-44-aarch64-bootstrap-1790633979.509862/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-1790633979.509862/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.aarch64 rpm-sequoia-1.10.3-1.fc44.aarch64 dnf5-5.4.6.0-1.fc44.aarch64 dnf5-plugins-5.4.6.0-1.fc44.aarch64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-5.fc44.src.rpm Start: build setup for mrtrix3-3.0.8-5.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790553600 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-5.fc44.src.rpm Updating and loading repositories: updates 100% | 76.9 KiB/s | 10.3 KiB | 00m00s fedora 100% | 78.3 KiB/s | 10.5 KiB | 00m00s Copr repository 100% | 90.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils aarch64 0:0.28-5.fc44 fedora 318.0 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB fftw-devel aarch64 0:3.3.10-17.fc44 fedora 282.2 KiB gcc-c++ aarch64 0:16.2.1-2.fc44 updates 44.8 MiB git aarch64 0:2.55.0-1.fc44 updates 57.7 KiB libpng-devel aarch64 2:1.6.58-1.fc44 updates 978.0 KiB libtiff-devel aarch64 0:4.7.2-1.fc44 updates 884.7 KiB mesa-libGL-devel aarch64 0:26.2.3-1.fc44 updates 80.8 KiB mesa-libGLU-devel aarch64 0:9.0.3-8.fc44 fedora 17.0 KiB python3 aarch64 0:3.14.7-1.fc44 updates 84.8 KiB python3-devel aarch64 0:3.14.7-1.fc44 updates 2.0 MiB qt5-qtbase-devel aarch64 0:5.15.18-2.fc44 fedora 19.1 MiB qt5-qtsvg-devel aarch64 0:5.15.18-2.fc44 fedora 83.5 KiB zlib-ng-compat-devel aarch64 0:2.3.3-3.fc44 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB annobin-docs noarch 0:13.14-1.fc44 updates 99.3 KiB annobin-plugin-gcc aarch64 0:13.14-1.fc44 updates 711.3 KiB avahi-libs aarch64 0:0.9~rc2-8.fc44 fedora 229.9 KiB cmake aarch64 0:4.3.0-1.fc44 fedora 32.9 MiB cmake-data noarch 0:4.3.0-1.fc44 fedora 9.4 MiB cmake-filesystem aarch64 0:4.3.0-1.fc44 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-1.fc44 fedora 8.4 KiB cpp aarch64 0:16.2.1-2.fc44 updates 40.8 MiB cups-filesystem noarch 1:2.4.19-3.fc44 updates 0.0 B cups-libs aarch64 1:2.4.19-3.fc44 updates 730.8 KiB dbus-libs aarch64 1:1.16.2-1.fc44 fedora 397.5 KiB default-fonts-core-sans noarch 0:4.3-1.fc44 fedora 11.9 KiB double-conversion aarch64 0:3.4.0-3.fc44 fedora 141.1 KiB duktape aarch64 0:2.7.0-11.fc44 fedora 671.6 KiB emacs-filesystem aarch64 1:30.2-2.fc44 fedora 0.0 B expat aarch64 0:2.8.3-1.fc44 updates 378.4 KiB fftw aarch64 0:3.3.10-17.fc44 fedora 220.9 KiB fftw-libs aarch64 0:3.3.10-17.fc44 fedora 0.0 B fftw-libs-double aarch64 0:3.3.10-17.fc44 fedora 1.8 MiB fftw-libs-long aarch64 0:3.3.10-17.fc44 fedora 2.3 MiB fftw-libs-single aarch64 0:3.3.10-17.fc44 fedora 1.9 MiB fontconfig aarch64 0:2.17.0-4.fc44 fedora 1.2 MiB fonts-filesystem noarch 1:5.0.0-2.fc44 fedora 0.0 B freetype aarch64 0:2.14.3-1.fc44 updates 878.6 KiB gcc aarch64 0:16.2.1-2.fc44 updates 112.5 MiB gcc-plugin-annobin aarch64 0:16.2.1-2.fc44 updates 69.2 KiB git-core aarch64 0:2.55.0-1.fc44 updates 24.8 MiB git-core-doc noarch 0:2.55.0-1.fc44 updates 18.9 MiB glib2 aarch64 0:2.88.3-1.fc44 updates 15.8 MiB glibc-devel aarch64 0:2.43-8.fc44 updates 2.3 MiB glx-utils aarch64 0:9.0.0-11.fc44 fedora 590.1 KiB google-noto-fonts-common noarch 0:20251201-2.fc44 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20251201-2.fc44 fedora 1.4 MiB graphite2 aarch64 0:1.3.14-20.fc44 fedora 239.3 KiB groff-base aarch64 0:1.23.0-12.fc44 fedora 4.2 MiB harfbuzz aarch64 0:14.1.0-2.fc44 updates 2.7 MiB hwdata noarch 0:0.411-1.fc44 updates 10.1 MiB jbigkit-libs aarch64 0:2.1-33.fc44 fedora 181.2 KiB jsoncpp aarch64 0:1.9.6-3.fc44 fedora 271.7 KiB kernel-headers aarch64 0:7.2.4-200.fc44 updates 6.9 MiB less aarch64 0:704-4.fc44 updates 607.5 KiB libICE aarch64 0:1.1.2-4.fc44 fedora 222.2 KiB libSM aarch64 0:1.2.5-4.fc44 fedora 128.9 KiB libX11 aarch64 0:1.8.13-1.fc44 fedora 1.3 MiB libX11-common noarch 0:1.8.13-1.fc44 fedora 1.1 MiB libX11-devel aarch64 0:1.8.13-1.fc44 fedora 1.0 MiB libX11-xcb aarch64 0:1.8.13-1.fc44 fedora 66.9 KiB libXau aarch64 0:1.0.12-4.fc44 fedora 120.8 KiB libXau-devel aarch64 0:1.0.12-4.fc44 fedora 7.3 KiB libXext aarch64 0:1.3.6-5.fc44 fedora 145.7 KiB libXxf86vm aarch64 0:1.1.6-4.fc44 fedora 69.1 KiB libasan aarch64 0:16.2.1-2.fc44 updates 1.5 MiB libatomic aarch64 0:16.2.1-2.fc44 updates 77.7 KiB libdrm aarch64 0:2.4.134-1.fc44 updates 765.3 KiB libdrm-devel aarch64 0:2.4.134-1.fc44 updates 791.1 KiB libedit aarch64 0:3.1-59.20260512cvs.fc44 updates 280.3 KiB libevdev aarch64 0:1.13.7-1.fc44 updates 134.0 KiB libglvnd aarch64 1:1.7.0-9.fc44 fedora 1.3 MiB libglvnd-core-devel aarch64 1:1.7.0-9.fc44 fedora 40.3 KiB libglvnd-devel aarch64 1:1.7.0-9.fc44 fedora 2.1 MiB libglvnd-egl aarch64 1:1.7.0-9.fc44 fedora 68.7 KiB libglvnd-gles aarch64 1:1.7.0-9.fc44 fedora 394.0 KiB libglvnd-glx aarch64 1:1.7.0-9.fc44 fedora 1.0 MiB libglvnd-opengl aarch64 1:1.7.0-9.fc44 fedora 329.0 KiB libgudev aarch64 0:238-9.fc44 fedora 103.6 KiB libicu aarch64 0:77.1-3.fc44 updates 36.5 MiB libinput aarch64 0:1.31.3-1.fc44 updates 952.5 KiB libjpeg-turbo aarch64 0:3.1.3-1.fc44 fedora 677.7 KiB libjpeg-turbo-devel aarch64 0:3.1.3-1.fc44 fedora 353.9 KiB liblerc aarch64 0:4.0.0-10.fc44 fedora 546.3 KiB liblerc-devel aarch64 0:4.0.0-10.fc44 fedora 4.3 MiB libmpc aarch64 0:1.4.1-1.fc44 updates 216.8 KiB libpciaccess aarch64 0:0.16-17.fc44 fedora 72.4 KiB libpciaccess-devel aarch64 0:0.16-17.fc44 fedora 15.3 KiB libpng aarch64 2:1.6.58-1.fc44 updates 269.7 KiB libproxy aarch64 0:0.5.12-2.fc44 fedora 166.0 KiB libstdc++-devel aarch64 0:16.2.1-2.fc44 updates 40.4 MiB libtiff aarch64 0:4.7.2-1.fc44 updates 659.4 KiB libubsan aarch64 0:16.2.1-2.fc44 updates 475.9 KiB libuv aarch64 1:1.52.1-2.fc44 updates 616.4 KiB libwacom aarch64 0:2.19.0-1.fc44 updates 150.1 KiB libwacom-data noarch 0:2.19.0-1.fc44 updates 1.4 MiB libwayland-client aarch64 0:1.26.0-1.fc44 updates 70.1 KiB libwebp aarch64 0:1.6.0-3.fc44 fedora 816.8 KiB libwebp-devel aarch64 0:1.6.0-3.fc44 fedora 121.7 KiB libxcb aarch64 0:1.17.0-7.fc44 fedora 2.1 MiB libxcb-devel aarch64 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel aarch64 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon aarch64 0:1.13.1-2.fc44 fedora 471.5 KiB libxkbcommon-x11 aarch64 0:1.13.1-2.fc44 fedora 67.4 KiB libxshmfence aarch64 0:1.3.2-8.fc44 fedora 68.4 KiB libzstd-devel aarch64 0:1.5.7-5.fc44 fedora 217.6 KiB llvm-filesystem aarch64 0:22.1.8-4.fc44 updates 0.0 B llvm-libs aarch64 0:22.1.8-4.fc44 updates 135.1 MiB lm_sensors-libs aarch64 0:3.6.0-24.fc44 fedora 93.7 KiB make aarch64 1:4.4.1-12.fc44 fedora 1.8 MiB mesa-dri-drivers aarch64 0:26.2.3-1.fc44 updates 39.4 MiB mesa-filesystem aarch64 0:26.2.3-1.fc44 updates 3.6 KiB mesa-libEGL aarch64 0:26.2.3-1.fc44 updates 394.4 KiB mesa-libGL aarch64 0:26.2.3-1.fc44 updates 398.0 KiB mesa-libGLU aarch64 0:9.0.3-8.fc44 fedora 329.5 KiB mesa-libgbm aarch64 0:26.2.3-1.fc44 updates 67.7 KiB mpdecimal aarch64 0:4.0.1-3.fc44 fedora 281.1 KiB mtdev aarch64 0:1.1.6-12.fc44 fedora 69.1 KiB ncurses aarch64 0:6.6-1.fc44 fedora 895.4 KiB ninja-build aarch64 0:1.13.2-2.fc44 fedora 467.8 KiB openssh aarch64 0:10.2p1-14.fc44 updates 1.4 MiB openssh-clients aarch64 0:10.2p1-14.fc44 updates 2.7 MiB pcre2-utf16 aarch64 0:10.47-1.fc44.1 fedora 582.9 KiB perl-AutoLoader noarch 0:5.74-525.fc44 updates 20.6 KiB perl-B aarch64 0:1.89-525.fc44 updates 545.3 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-525.fc44 updates 25.4 KiB perl-Data-Dumper aarch64 0:2.192-523.fc44 updates 135.6 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 aarch64 0:2.59-521.fc44 fedora 103.6 KiB perl-DynaLoader aarch64 0:1.57-525.fc44 updates 32.1 KiB perl-Encode aarch64 4:3.21-521.fc44 fedora 4.8 MiB perl-English noarch 0:1.11-525.fc44 updates 6.2 KiB perl-Errno aarch64 0:1.38-525.fc44 updates 8.4 KiB perl-Error noarch 1:0.17030-3.fc44 fedora 76.8 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-Fcntl aarch64 0:1.20-525.fc44 updates 92.7 KiB perl-File-Basename noarch 0:2.86-525.fc44 updates 14.0 KiB perl-File-Find noarch 0:1.44-525.fc44 updates 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-525.fc44 updates 12.5 KiB perl-FileHandle noarch 0:2.05-525.fc44 updates 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-525.fc44 updates 11.2 KiB perl-Git noarch 0:2.55.0-1.fc44 updates 64.4 KiB perl-HTTP-Tiny noarch 0:0.096-1.fc44 updates 162.4 KiB perl-IO aarch64 0:1.55-525.fc44 updates 191.3 KiB perl-IO-Socket-IP noarch 0:0.43-522.fc44 fedora 100.3 KiB perl-IO-Socket-SSL noarch 0:2.098-2.fc44 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-525.fc44 updates 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 aarch64 0:3.16-521.fc44 fedora 93.9 KiB perl-Net-SSLeay aarch64 0:1.94-12.fc44 fedora 1.4 MiB perl-POSIX aarch64 0:2.23-525.fc44 updates 261.5 KiB perl-PathTools aarch64 0:3.94-521.fc44 fedora 223.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-4.fc44 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-2.fc44 fedora 152.8 KiB perl-SelectSaver noarch 0:1.02-525.fc44 updates 2.2 KiB perl-Socket aarch64 4:2.043-1.fc44 updates 145.8 KiB perl-Storable aarch64 1:3.37-522.fc44 fedora 243.1 KiB perl-Symbol noarch 0:1.09-525.fc44 updates 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-TermReadKey aarch64 0:2.38-27.fc44 fedora 107.9 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes aarch64 4:1.9778-521.fc44 fedora 151.6 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.36-1.fc44 updates 275.7 KiB perl-Unicode-Normalize aarch64 0:1.32-521.fc44 fedora 524.4 KiB perl-base noarch 0:2.27-525.fc44 updates 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-if noarch 0:0.61.000-525.fc44 updates 5.8 KiB perl-interpreter aarch64 4:5.42.3-525.fc44 updates 174.9 KiB perl-lib aarch64 0:0.65-525.fc44 updates 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs aarch64 4:5.42.3-525.fc44 updates 11.6 MiB perl-locale noarch 0:1.13-525.fc44 updates 6.1 KiB perl-mro aarch64 0:1.29-525.fc44 updates 81.5 KiB perl-overload noarch 0:1.40-525.fc44 updates 71.6 KiB perl-overloading noarch 0:0.02-525.fc44 updates 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-525.fc44 updates 3.9 KiB pyproject-rpm-macros noarch 0:1.23.2-1.fc44 updates 156.3 KiB python-pip-wheel noarch 0:26.0.1-3.fc44 updates 1.2 MiB python-rpm-macros noarch 0:3.14-12.fc44 fedora 28.0 KiB python3-libs aarch64 0:3.14.7-1.fc44 updates 45.6 MiB python3-packaging noarch 0:25.0-8.fc44 fedora 607.4 KiB python3-rpm-generators noarch 0:14-14.fc44 fedora 81.7 KiB python3-rpm-macros noarch 0:3.14-12.fc44 fedora 6.5 KiB qt-settings noarch 0:44.0-1.fc44 updates 1.1 KiB qt5-filesystem aarch64 0:5.15.18-2.fc44 fedora 0.0 B qt5-qtbase aarch64 0:5.15.18-2.fc44 fedora 10.3 MiB qt5-qtbase-common noarch 0:5.15.18-2.fc44 fedora 78.0 B qt5-qtbase-gui aarch64 0:5.15.18-2.fc44 fedora 21.1 MiB qt5-qtsvg aarch64 0:5.15.18-2.fc44 fedora 718.9 KiB qt5-rpm-macros noarch 0:5.15.18-2.fc44 fedora 1.6 KiB rhash aarch64 0:1.4.5-4.fc44 fedora 394.5 KiB spirv-tools-libs aarch64 0:2026.1-1.fc44 fedora 5.7 MiB tzdata noarch 0:2026c-2.fc44 updates 1.2 MiB vim-filesystem noarch 2:9.2.1129-1.fc44 updates 40.0 B vulkan-headers noarch 0:1.4.341.0-1.fc44 fedora 36.1 MiB vulkan-loader aarch64 0:1.4.341.0-1.fc44 fedora 613.4 KiB vulkan-loader-devel aarch64 0:1.4.341.0-1.fc44 fedora 8.0 KiB xcb-util aarch64 0:0.4.1-9.fc44 fedora 70.2 KiB xcb-util-image aarch64 0:0.4.1-9.fc44 fedora 70.0 KiB xcb-util-keysyms aarch64 0:0.4.1-9.fc44 fedora 68.5 KiB xcb-util-renderutil aarch64 0:0.3.10-9.fc44 fedora 72.3 KiB xcb-util-wm aarch64 0:0.4.2-9.fc44 fedora 137.0 KiB xkeyboard-config noarch 0:2.47-1.fc44 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB Transaction Summary: Installing: 218 packages Total size of inbound packages is 219 MiB. Need to download 219 MiB. After this operation, 823 MiB extra will be used (install 823 MiB, remove 0 B). [ 1/218] desktop-file-utils-0:0.28-5.f 100% | 4.2 MiB/s | 69.4 KiB | 00m00s [ 2/218] fftw-devel-0:3.3.10-17.fc44.a 100% | 7.6 MiB/s | 132.7 KiB | 00m00s [ 3/218] mesa-libGLU-devel-0:9.0.3-8.f 100% | 2.9 MiB/s | 11.9 KiB | 00m00s [ 4/218] qt5-qtbase-devel-0:5.15.18-2. 100% | 169.4 MiB/s | 3.4 MiB | 00m00s [ 5/218] eigen3-devel-0:5.0.1-3.fc44.n 100% | 31.6 MiB/s | 1.3 MiB | 00m00s [ 6/218] zlib-ng-compat-devel-0:2.3.3- 100% | 12.4 MiB/s | 38.1 KiB | 00m00s [ 7/218] git-0:2.55.0-1.fc44.aarch64 100% | 10.0 MiB/s | 41.1 KiB | 00m00s [ 8/218] libpng-devel-2:1.6.58-1.fc44. 100% | 36.9 MiB/s | 302.3 KiB | 00m00s [ 9/218] libtiff-devel-0:4.7.2-1.fc44. 100% | 47.6 MiB/s | 292.7 KiB | 00m00s [ 10/218] mesa-libGL-devel-0:26.2.3-1.f 100% | 6.4 MiB/s | 26.2 KiB | 00m00s [ 11/218] python3-0:3.14.7-1.fc44.aarch 100% | 7.1 MiB/s | 29.3 KiB | 00m00s [ 12/218] python3-devel-0:3.14.7-1.fc44 100% | 47.6 MiB/s | 438.7 KiB | 00m00s [ 13/218] qt5-qtsvg-devel-0:5.15.18-2.f 100% | 517.2 KiB/s | 31.0 KiB | 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[193/218] libwacom-0:2.19.0-1.fc44.aarc 100% | 9.8 MiB/s | 50.4 KiB | 00m00s [194/218] libevdev-0:1.13.7-1.fc44.aarc 100% | 3.4 MiB/s | 37.8 KiB | 00m00s [195/218] libgudev-0:238-9.fc44.aarch64 100% | 4.7 MiB/s | 33.9 KiB | 00m00s [196/218] libwacom-data-0:2.19.0-1.fc44 100% | 22.6 MiB/s | 346.9 KiB | 00m00s [197/218] less-0:704-4.fc44.aarch64 100% | 21.6 MiB/s | 221.5 KiB | 00m00s [198/218] kernel-headers-0:7.2.4-200.fc 100% | 81.7 MiB/s | 1.7 MiB | 00m00s [199/218] openssh-clients-0:10.2p1-14.f 100% | 91.0 MiB/s | 745.6 KiB | 00m00s [200/218] perl-lib-0:0.65-525.fc44.aarc 100% | 3.5 MiB/s | 14.2 KiB | 00m00s [201/218] openssh-0:10.2p1-14.fc44.aarc 100% | 33.8 MiB/s | 346.0 KiB | 00m00s [202/218] libmpc-0:1.4.1-1.fc44.aarch64 100% | 18.0 MiB/s | 73.7 KiB | 00m00s [203/218] glibc-devel-0:2.43-8.fc44.aar 100% | 99.3 MiB/s | 610.3 KiB | 00m00s [204/218] libxcrypt-devel-0:4.5.2-3.fc4 100% | 5.9 MiB/s | 30.0 KiB | 00m00s [205/218] libasan-0:16.2.1-2.fc44.aarch 100% | 100.7 MiB/s | 515.8 KiB | 00m00s [206/218] libubsan-0:16.2.1-2.fc44.aarc 100% | 37.1 MiB/s | 227.9 KiB | 00m00s [207/218] perl-FileHandle-0:2.05-525.fc 100% | 3.6 MiB/s | 14.8 KiB | 00m00s [208/218] gcc-plugin-annobin-0:16.2.1-2 100% | 14.2 MiB/s | 58.3 KiB | 00m00s [209/218] cmake-rpm-macros-0:4.3.0-1.fc 100% | 1.3 MiB/s | 13.8 KiB | 00m00s [210/218] pyproject-rpm-macros-0:1.23.2 100% | 7.6 MiB/s | 54.8 KiB | 00m00s [211/218] python3-rpm-generators-0:14-1 100% | 7.0 MiB/s | 28.6 KiB | 00m00s [212/218] python-rpm-macros-0:3.14-12.f 100% | 3.9 MiB/s | 20.0 KiB | 00m00s [213/218] python3-rpm-macros-0:3.14-12. 100% | 2.4 MiB/s | 12.4 KiB | 00m00s [214/218] ninja-build-0:1.13.2-2.fc44.a 100% | 25.6 MiB/s | 183.3 KiB | 00m00s [215/218] annobin-plugin-gcc-0:13.14-1. 100% | 74.2 MiB/s | 684.0 KiB | 00m00s [216/218] python3-packaging-0:25.0-8.fc 100% | 13.1 MiB/s | 161.2 KiB | 00m00s [217/218] annobin-docs-0:13.14-1.fc44.n 100% | 21.2 MiB/s | 86.7 KiB | 00m00s [218/218] llvm-libs-0:22.1.8-4.fc44.aar 100% | 179.1 MiB/s | 32.8 MiB | 00m00s -------------------------------------------------------------------------------- [218/218] Total 100% | 169.8 MiB/s | 219.4 MiB | 00m01s Running transaction [ 1/220] Verify package files 100% | 309.0 B/s | 218.0 B | 00m01s [ 2/220] Prepare transaction 100% | 1.2 KiB/s | 218.0 B | 00m00s [ 3/220] Installing cmake-filesystem-0 100% | 3.0 MiB/s | 9.4 KiB | 00m00s [ 4/220] Installing glib2-0:2.88.3-1.f 100% | 243.3 MiB/s | 15.8 MiB | 00m00s [ 5/220] Installing expat-0:2.8.3-1.fc 100% | 19.6 MiB/s | 380.4 KiB | 00m00s [ 6/220] Installing libX11-xcb-0:1.8.1 100% | 66.1 MiB/s | 67.7 KiB | 00m00s [ 7/220] Installing libglvnd-1:1.7.0-9 100% | 443.4 MiB/s | 1.3 MiB | 00m00s [ 8/220] Installing python-rpm-macros- 100% | 28.2 MiB/s | 28.9 KiB | 00m00s [ 9/220] Installing libmpc-0:1.4.1-1.f 100% | 213.4 MiB/s | 218.5 KiB | 00m00s [ 10/220] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 11/220] Installing libjpeg-turbo-0:3. 100% | 221.2 MiB/s | 679.4 KiB 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libSM-0:1.2.5-4.fc 100% | 127.2 MiB/s | 130.3 KiB | 00m00s [ 38/220] Installing liblerc-devel-0:4. 100% | 428.7 MiB/s | 4.3 MiB | 00m00s [ 39/220] Installing libwebp-devel-0:1. 100% | 61.2 MiB/s | 125.4 KiB | 00m00s [ 40/220] Installing libXau-devel-0:1.0 100% | 1.5 MiB/s | 9.1 KiB | 00m00s [ 41/220] Installing libxcb-devel-0:1.1 100% | 48.7 MiB/s | 3.0 MiB | 00m00s [ 42/220] Installing xcb-util-keysyms-0 100% | 68.0 MiB/s | 69.6 KiB | 00m00s [ 43/220] Installing xcb-util-renderuti 100% | 72.0 MiB/s | 73.7 KiB | 00m00s [ 44/220] Installing xcb-util-wm-0:0.4. 100% | 135.8 MiB/s | 139.0 KiB | 00m00s [ 45/220] Installing xcb-util-0:0.4.1-9 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [ 46/220] Installing xcb-util-image-0:0 100% | 69.8 MiB/s | 71.4 KiB | 00m00s [ 47/220] Installing mesa-libGLU-0:9.0. 100% | 161.3 MiB/s | 330.3 KiB | 00m00s [ 48/220] Installing pyproject-rpm-macr 100% | 154.9 MiB/s | 158.6 KiB | 00m00s [ 49/220] Installing libjpeg-turbo-deve 100% | 174.1 MiB/s | 356.5 KiB | 00m00s 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libicu-0:77.1-3.fc 100% | 351.3 MiB/s | 36.5 MiB | 00m00s [ 76/220] Installing spirv-tools-libs-0 100% | 356.1 MiB/s | 5.7 MiB | 00m00s [ 77/220] Installing lm_sensors-libs-0: 100% | 92.6 MiB/s | 94.8 KiB | 00m00s [ 78/220] Installing libxshmfence-0:1.3 100% | 67.9 MiB/s | 69.5 KiB | 00m00s [ 79/220] Installing mesa-filesystem-0: 100% | 4.2 MiB/s | 4.3 KiB | 00m00s [ 80/220] Installing mesa-dri-drivers-0 100% | 375.1 MiB/s | 39.4 MiB | 00m00s [ 81/220] Installing mesa-libgbm-0:26.2 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [ 82/220] Installing mtdev-0:1.1.6-12.f 100% | 68.7 MiB/s | 70.3 KiB | 00m00s [ 83/220] Installing graphite2-0:1.3.14 100% | 13.1 MiB/s | 241.5 KiB | 00m00s [ 84/220] Installing freetype-0:2.14.3- 100% | 214.9 MiB/s | 880.3 KiB | 00m00s [ 85/220] Installing harfbuzz-0:14.1.0- 100% | 267.3 MiB/s | 2.7 MiB | 00m00s [ 86/220] Installing cups-filesystem-1: 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 87/220] Installing cups-libs-1:2.4.19 100% | 238.4 MiB/s | 732.4 KiB | 00m00s [ 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Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790553600 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-5.fc44.src.rpm Updating and loading repositories: updates 100% | 135.6 KiB/s | 10.3 KiB | 00m00s fedora 100% | 138.0 KiB/s | 10.5 KiB | 00m00s Copr repository 100% | 85.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "desktop-file-utils-0.28-5.fc44.aarch64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "fftw-devel-3.3.10-17.fc44.aarch64" is already installed. Package "gcc-c++-16.2.1-2.fc44.aarch64" is already installed. Package "git-2.55.0-1.fc44.aarch64" is already installed. Package "libpng-devel-2:1.6.58-1.fc44.aarch64" is already installed. Package "libtiff-devel-4.7.2-1.fc44.aarch64" is already installed. Package "mesa-libGL-devel-26.2.3-1.fc44.aarch64" is already installed. Package "mesa-libGLU-devel-9.0.3-8.fc44.aarch64" is already installed. Package "python3-3.14.7-1.fc44.aarch64" is already installed. Package "python3-devel-3.14.7-1.fc44.aarch64" is already installed. Package "qt5-qtbase-devel-5.15.18-2.fc44.aarch64" is already installed. Package "qt5-qtsvg-devel-5.15.18-2.fc44.aarch64" is already installed. Package "zlib-ng-compat-devel-2.3.3-3.fc44.aarch64" is already installed. Nothing to do. Finish: build setup for mrtrix3-3.0.8-5.fc44.src.rpm Start: rpmbuild mrtrix3-3.0.8-5.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790553600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.FqBINn Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.MihuMG + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar xf /builddir/build/SOURCES/eigen-3.4.0.tar.gz + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.g6sHuQ + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + unset ARCH + export NUMBER_OF_PROCESSORS=1 + NUMBER_OF_PROCESSORS=1 + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + export 'EIGEN_CFLAGS=-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + EIGEN_CFLAGS='-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + ./configure MRtrix build type requested: release version Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: Header: 1.6.58; library: 1.6.58 Checking for FFTW library: fftw-3.3.10-neon Checking for Qt moc: /usr/bin/moc-qt5 (version 5.15.18) Checking for Qt qmake: /usr/bin/qmake-qt5 (version 5.15.18) Checking for Qt rcc: /usr/bin/rcc-qt5 (version 5.15.18) Checking for Qt: 5.15.18 writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/548) [CC] tmp/src/exec_version.o ( 2/548) [CC] tmp/cmd/warpinvert.o ( 3/548) [CC] tmp/core/math/stats/fwe.o ( 4/548) [CC] tmp/core/image_io/scratch.o ( 5/548) [CC] tmp/core/file/nifti_utils.o ( 6/548) [CC] tmp/core/file/tiff.o ( 7/548) [CC] tmp/core/file/dicom/quick_scan.o ( 8/548) [CC] tmp/core/app.o ( 9/548) [CC] tmp/core/filter/connected_components.o ( 10/548) [CC] tmp/core/file/mmap.o ( 11/548) [CC] tmp/core/dwi/shells.o ( 12/548) [CC] tmp/core/dwi/gradient.o ( 13/548) [CC] tmp/core/formats/ram.o ( 14/548) [CC] tmp/core/math/stats/glm.o ( 15/548) [CC] tmp/core/image_io/ram.o ( 16/548) [CC] tmp/core/metadata/bids.o ( 17/548) [CC] tmp/core/formats/dicom.o ( 18/548) [CC] tmp/core/image_io/default.o ( 19/548) [CC] tmp/core/formats/mgz.o ( 20/548) [CC] tmp/core/math/stats/shuffle.o ( 21/548) [CC] tmp/core/formats/mgh.o ( 22/548) [CC] tmp/core/file/dicom/study.o ( 23/548) [CC] tmp/core/math/zstatistic.o ( 24/548) [CC] tmp/core/math/erfinv.o ( 25/548) [CC] tmp/core/math/bessel.o ( 26/548) [CC] tmp/core/signal_handler.o ( 27/548) [CC] tmp/core/formats/mrtrix_sparse_legacy.o ( 28/548) [CC] tmp/core/image_io/fetch_store.o ( 29/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 30/548) [CC] tmp/core/math/SH.o ( 31/548) [CC] tmp/core/image_io/gz.o ( 32/548) [CC] tmp/core/image_io/pipe.o ( 33/548) [CC] tmp/core/image_io/base.o ( 34/548) [CC] tmp/core/formats/png.o ( 35/548) [CC] tmp/core/file/key_value.o ( 36/548) [CC] tmp/core/formats/xds.o ( 37/548) [CC] tmp/core/file/dicom/dict.o ( 38/548) [CC] tmp/core/datatype.o ( 39/548) [CC] tmp/core/file/dicom/select_cmdline.o ( 40/548) [CC] tmp/core/version.o ( 41/548) [CC] tmp/core/image_io/sparse.o ( 42/548) [CC] tmp/core/file/ofstream.o ( 43/548) [CC] tmp/core/math/betainc.o ( 44/548) [CC] tmp/core/math/average_space.o ( 45/548) [CC] tmp/core/formats/tiff.o ( 46/548) [CC] tmp/core/file/dicom/element.o ( 47/548) [CC] tmp/core/exception.o ( 48/548) [CC] tmp/core/math/stats/import.o ( 49/548) [CC] tmp/core/formats/mri.o ( 50/548) [CC] tmp/core/image_io/null.o ( 51/548) [CC] tmp/core/file/mgh.o ( 52/548) [CC] tmp/core/header.o ( 53/548) [CC] tmp/core/formats/mrtrix.o ( 54/548) [CC] tmp/core/stats.o ( 55/548) [CC] tmp/core/mrtrix.o ( 56/548) [CC] tmp/core/formats/mrtrix_utils.o ( 57/548) [CC] tmp/core/file/dicom/image.o ( 58/548) [CC] tmp/core/file/png.o ( 59/548) [CC] tmp/core/formats/nifti2_gz.o ( 60/548) [CC] tmp/core/image_io/variable_scaling.o ( 61/548) [CC] tmp/core/metadata/slice_encoding.o ( 62/548) [CC] tmp/core/image_io/mosaic.o ( 63/548) [CC] tmp/core/file/dicom/tree.o ( 64/548) [CC] tmp/core/axes.o ( 65/548) [CC] tmp/core/thread.o ( 66/548) [CC] tmp/core/formats/par.o ( 67/548) [CC] tmp/core/misc/bitset.o ( 68/548) [CC] tmp/core/algo/histogram.o ( 69/548) [CC] tmp/core/formats/nifti2.o ( 70/548) [CC] tmp/core/file/name_parser.o ( 71/548) [CC] tmp/core/file/dicom/mapper.o ( 72/548) [CC] tmp/core/file/dicom/patient.o ( 73/548) [CC] tmp/core/metadata/phase_encoding.o ( 74/548) [CC] tmp/core/formats/mrtrix_gz.o ( 75/548) [CC] tmp/core/formats/nifti1.o ( 76/548) [CC] tmp/core/formats/list.o ( 77/548) [CC] tmp/core/formats/pipe.o ( 78/548) [CC] tmp/core/stride.o ( 79/548) [CC] tmp/core/file/dicom/series.o ( 80/548) [CC] tmp/core/progressbar.o ( 81/548) [CC] tmp/core/adapter/reslice.o ( 82/548) [CC] tmp/core/file/config.o ( 83/548) [CC] tmp/core/image_io/png.o ( 84/548) [CC] tmp/core/image_io/tiff.o ( 85/548) [CC] tmp/core/formats/nifti1_gz.o ( 86/548) [LD] lib/libmrtrix.so ( 87/548) [LB] bin/warpinvert ( 88/548) [CC] tmp/cmd/warpinit.o ( 89/548) [LB] bin/warpinit ( 90/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ ( 91/548) [LB] bin/warpcorrect ( 92/548) [CC] tmp/cmd/warpconvert.o ( 93/548) [LB] bin/warpconvert ( 94/548) [CC] tmp/cmd/warp2metric.o ( 95/548) [LB] bin/warp2metric ( 96/548) [CC] tmp/cmd/voxel2mesh.o ( 97/548) [CC] tmp/src/surface/scalar.o ( 98/548) [CC] tmp/src/surface/polygon.o ( 99/548) [CC] tmp/src/connectome/connectome.o (100/548) [CC] tmp/src/surface/mesh.o (101/548) [CC] tmp/src/surface/freesurfer.o (102/548) [CC] tmp/src/connectome/lut.o (103/548) [LB] bin/voxel2mesh (104/548) [CC] tmp/cmd/voxel2fixel.o (105/548) [LB] bin/voxel2fixel (106/548) [CC] tmp/cmd/vectorstats.o (107/548) [CC] tmp/src/stats/permtest.o (108/548) [LB] bin/vectorstats (109/548) [CC] tmp/cmd/tsfvalidate.o (110/548) [CC] tmp/src/dwi/tractography/roi.o (111/548) [CC] tmp/src/dwi/tractography/seeding/list.o (112/548) [CC] tmp/src/dwi/tractography/file_base.o (113/548) [CC] tmp/src/dwi/tractography/rng.o (114/548) [CC] tmp/src/dwi/tractography/properties.o (115/548) [LB] bin/tsfvalidate (116/548) [CC] tmp/cmd/tsfthreshold.o (117/548) [LB] bin/tsfthreshold (118/548) [CC] tmp/cmd/tsfsmooth.o (119/548) [LB] bin/tsfsmooth (120/548) [CC] tmp/cmd/tsfmult.o (121/548) [LB] bin/tsfmult (122/548) [CC] tmp/cmd/tsfinfo.o (123/548) [LB] bin/tsfinfo (124/548) [CC] tmp/cmd/tsfdivide.o (125/548) [LB] bin/tsfdivide (126/548) [CC] tmp/cmd/transformconvert.o (127/548) [LB] bin/transformconvert (128/548) [CC] tmp/cmd/transformcompose.o (129/548) [LB] bin/transformcompose (130/548) [CC] tmp/cmd/transformcalc.o (131/548) [LB] bin/transformcalc (132/548) [CC] tmp/cmd/tensor2metric.o (133/548) [LB] bin/tensor2metric (134/548) [CC] tmp/cmd/tcktransform.o (135/548) [LB] bin/tcktransform (136/548) [CC] tmp/cmd/tckstats.o (137/548) [CC] tmp/src/dwi/tractography/weights.o (138/548) [LB] bin/tckstats (139/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (140/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (141/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (142/548) [CC] tmp/src/dwi/directions/set.o (143/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (144/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (145/548) [CC] tmp/src/dwi/tractography/resampling/arc.o (146/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (147/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (148/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (149/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o (150/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (151/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (152/548) [CC] tmp/src/dwi/directions/predefined.o (153/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (154/548) [CC] tmp/src/dwi/tractography/ACT/act.o (155/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (156/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (157/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (158/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (159/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o (160/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o (161/548) [CC] tmp/src/dwi/directions/mask.o (162/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o (163/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o (164/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (165/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (166/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (167/548) [CC] tmp/src/dwi/fmls.o (168/548) [LB] bin/tcksift2 (169/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (170/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (171/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (172/548) [LB] bin/tcksift (173/548) [CC] tmp/cmd/tcksample.o (174/548) [LB] bin/tcksample (175/548) [CC] tmp/cmd/tckresample.o (176/548) [LB] bin/tckresample (177/548) [CC] tmp/src/dwi/tractography/mapping/writer.o (178/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (179/548) [CC] tmp/cmd/tckmap.o (180/548) [LB] bin/tckmap (181/548) [CC] tmp/cmd/tckinfo.o (182/548) [LB] bin/tckinfo (183/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (184/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (185/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (186/548) [CC] tmp/src/dwi/tractography/GT/gt.o (187/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (188/548) [CC] tmp/src/dwi/tractography/GT/particle.o (189/548) [CC] tmp/cmd/tckglobal.o (190/548) [LB] bin/tckglobal (191/548) [CC] tmp/src/dwi/tractography/tracking/method.o (192/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o (193/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (194/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2217[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (195/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (196/548) [CC] tmp/src/dwi/tractography/seeding/basic.o (197/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o (198/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (199/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (200/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (201/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (202/548) [CC] tmp/src/dwi/tractography/tracking/shared.o (203/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (204/548) [LB] bin/tckgen (205/548) [CC] tmp/src/dwi/tractography/editing/receiver.o (206/548) [CC] tmp/src/dwi/tractography/editing/worker.o (207/548) [CC] tmp/src/dwi/tractography/editing/editing.o (208/548) [CC] tmp/cmd/tckedit.o (209/548) [LB] bin/tckedit (210/548) [CC] tmp/cmd/tckdfc.o (211/548) [LB] bin/tckdfc (212/548) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/ConfigureVectorization.h:392, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:22, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: In function ‘float32x2_t vld1_f32(const float32_t*)’, inlined from ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = __Float32x2_t]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/arch/NEON/PacketMath.h:1710:45, inlined from ‘Packet Eigen::internal::ploadt(const typename unpacket_traits::type*) [with Packet = __Float32x2_t; int Alignment = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘PacketType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:596:81, inlined from ‘PacketType Eigen::internal::redux_evaluator<_XprType>::packetByOuterInner(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:386:54, inlined from ‘static PacketType Eigen::internal::redux_vec_unroller::run(const Evaluator&, const Func&) [with PacketType = __Float32x2_t; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:177:66, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:344:115, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/lib/gcc/aarch64-redhat-linux/16/include/arm_neon.h:11978:36: warning: ‘*(__Float32x2_t*)((char*)&normal + offsetof(Eigen::Vector3f, Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[0]))’ may be used uninitialized [-Wmaybe-uninitialized] 11978 | return __builtin_aarch64_ld1v2sf ((const __builtin_aarch64_simd_sf *) __a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ (213/548) [LB] bin/tckconvert (214/548) [CC] tmp/cmd/tck2fixel.o (215/548) [LB] bin/tck2fixel (216/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (217/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o (218/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o (219/548) [CC] tmp/cmd/tck2connectome.o (220/548) [LB] bin/tck2connectome (221/548) [CC] tmp/src/gui/shview/file_open.o (222/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp (223/548) [CC] tmp/src/gui/shview/render_window_moc.o (224/548) [CC] tmp/src/gui/dialog/progress.o (225/548) [CC] tmp/cmd/shview.o (226/548) [CC] tmp/src/gui/projection.o (227/548) [CC] tmp/src/gui/dialog/list.o (228/548) [CC] tmp/src/gui/dialog/report_exception.o (229/548) [CC] tmp/src/gui/shapes/halfsphere.o (230/548) [CC] tmp/src/gui/dwi/render_frame.o (231/548) [CC] tmp/src/gui/opengl/shader.o (232/548) [CC] tmp/src/gui/dialog/file.o (233/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (234/548) [CC] tmp/src/gui/dwi/render_frame_moc.o (235/548) [CC] tmp/src/gui/dwi/renderer.o (236/548) [CC] tmp/src/gui/color_button.o (237/548) [CC] tmp/src/gui/opengl/lighting.o (238/548) [CC] tmp/src/gui/dialog/dialog.o (239/548) [CC] tmp/src/gui/crosshair.o (240/548) [CC] tmp/src/gui/lighting_dock.o (241/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp (242/548) [CC] tmp/src/gui/lighting_dock_moc.o (243/548) [CC] tmp/src/gui/opengl/gl.o (244/548) [CC] tmp/src/gui/opengl/font.o (245/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (246/548) [CC] tmp/src/gui/opengl/lighting_moc.o (247/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o (248/548) [CC] tmp/src/gui/shview/render_window.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (249/548) [RCC] tmp/src/gui/shview/icons.cpp (250/548) [CC] tmp/src/gui/shview/icons.o (251/548) [MOC] tmp/src/gui/color_button_moc.cpp (252/548) [CC] tmp/src/gui/color_button_moc.o (253/548) [CC] tmp/src/gui/gui.o (254/548) [CC] tmp/src/gui/dialog/dicom.o (255/548) [LB] bin/shview (256/548) [CC] tmp/cmd/shconv.o (257/548) [LB] bin/shconv (258/548) [CC] tmp/cmd/shbasis.o (259/548) [LB] bin/shbasis (260/548) [CC] tmp/cmd/sh2response.o (261/548) [LB] bin/sh2response (262/548) [CC] tmp/cmd/sh2power.o (263/548) [LB] bin/sh2power (264/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.713[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (265/548) [LB] bin/sh2peaks (266/548) [CC] tmp/cmd/sh2amp.o (267/548) [CC] tmp/src/dwi/directions/file.o (268/548) [LB] bin/sh2amp (269/548) [CC] tmp/cmd/peaks2fixel.o (270/548) [LB] bin/peaks2fixel (271/548) [CC] tmp/cmd/peaks2amp.o (272/548) [LB] bin/peaks2amp (273/548) [CC] tmp/cmd/mtnormalise.o (274/548) [LB] bin/mtnormalise (275/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o (276/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (277/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o (278/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o (279/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (280/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o (281/548) [CC] tmp/src/gui/mrview/tool/odf/model.o (282/548) [CC] tmp/src/gui/mrview/combo_box_error.o (283/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (284/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (285/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o (286/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (287/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (288/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o (289/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (290/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (291/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (292/548) [CC] tmp/src/gui/mrview/tool/view_moc.o (293/548) [MOC] tmp/src/gui/mrview/window_moc.cpp (294/548) [CC] tmp/src/gui/mrview/window_moc.o (295/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (296/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (297/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (298/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (299/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (300/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (301/548) [CC] tmp/src/gui/mrview/tool/overlay.o (302/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (303/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (304/548) [CC] tmp/src/gui/mrview/mode/lightbox.o (305/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (306/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (307/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (308/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (309/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (310/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (311/548) [CC] tmp/src/gui/dialog/opengl.o (312/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (313/548) [CC] tmp/src/gui/mrview/spin_box_moc.o (314/548) [CC] tmp/src/gui/mrview/mode/slice.o (315/548) [CC] tmp/src/gui/mrview/window.o (316/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (317/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (318/548) [CC] tmp/cmd/mrview.o (319/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp (320/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o (321/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o (322/548) [CC] tmp/src/gui/mrview/adjust_button.o (323/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (324/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (325/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (326/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (327/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (328/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (329/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (330/548) [CC] tmp/src/gui/mrview/gui_image.o (331/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o (332/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (333/548) [CC] tmp/src/gui/dialog/image_properties_moc.o (334/548) [CC] tmp/src/gui/mrview/tool/transform.o (335/548) [CC] tmp/src/gui/shapes/cylinder.o (336/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (337/548) [CC] tmp/src/gui/mrview/displayable.o (338/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp (339/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o (340/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (341/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (342/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (343/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (344/548) [CC] tmp/src/gui/mrview/colourmap_button.o (345/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o (346/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (347/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (348/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (349/548) [CC] tmp/src/gui/mrview/file_open.o (350/548) [CC] tmp/src/gui/shapes/sphere.o (351/548) [CC] tmp/src/gui/mrview/sync/client.o (352/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (353/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (354/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (355/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o (356/548) [CC] tmp/src/gui/mrview/mode/base.o (357/548) [CC] tmp/src/gui/mrview/mode/ortho.o (358/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (359/548) [CC] tmp/src/gui/mrview/tool/odf/item.o (360/548) [CC] tmp/src/gui/cursor.o (361/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o (362/548) [CC] tmp/src/gui/mrview/colourbars.o (363/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (364/548) [CC] tmp/src/gui/dialog/image_properties.o (365/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (366/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (367/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (368/548) [RCC] tmp/src/gui/mrview/icons.cpp (369/548) [CC] tmp/src/gui/mrview/icons.o (370/548) [CC] tmp/src/colourmap.o (371/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (372/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (373/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (374/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (375/548) [CC] tmp/src/gui/mrview/volume.o (376/548) [CC] tmp/src/surface/mesh_multi.o (377/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (378/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (379/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (380/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (381/548) [CC] tmp/src/gui/mrview/tool/view.o (382/548) [CC] tmp/src/gui/shapes/cube.o (383/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (384/548) [CC] tmp/src/gui/mrview/displayable_moc.o (385/548) [CC] tmp/src/gui/mrview/tool/base.o (386/548) [CC] tmp/src/gui/mrview/mode/volume.o (387/548) [CC] tmp/src/gui/mrview/sync/processlock.o (388/548) [LB] bin/mrview (389/548) [CC] tmp/src/registration/multi_contrast.o (390/548) [CC] tmp/cmd/mrtransform.o (391/548) [LB] bin/mrtransform (392/548) [CC] tmp/cmd/mrthreshold.o (393/548) [LB] bin/mrthreshold (394/548) [CC] tmp/cmd/mrstats.o (395/548) [LB] bin/mrstats (396/548) [CC] tmp/src/registration/transform/affine.o (397/548) [CC] tmp/cmd/mrregister.o (398/548) [CC] tmp/src/registration/transform/rigid.o (399/548) [CC] tmp/src/registration/transform/convergence_check.o (400/548) [CC] tmp/src/registration/transform/initialiser_helpers.o (401/548) [CC] tmp/src/registration/transform/initialiser.o (402/548) [CC] tmp/src/registration/linear.o (403/548) [CC] tmp/src/registration/nonlinear.o (404/548) [LB] bin/mrregister (405/548) [CC] tmp/cmd/mrmetric.o (406/548) [LB] bin/mrmetric (407/548) [CC] tmp/cmd/mrmath.o (408/548) [LB] bin/mrmath (409/548) [CC] tmp/cmd/mrinfo.o (410/548) [LB] bin/mrinfo (411/548) [CC] tmp/cmd/mrhistogram.o (412/548) [LB] bin/mrhistogram (413/548) [CC] tmp/cmd/mrhistmatch.o (414/548) [LB] bin/mrhistmatch (415/548) [CC] tmp/cmd/mrgrid.o (416/548) [LB] bin/mrgrid (417/548) [CC] tmp/cmd/mrfilter.o (418/548) [LB] bin/mrfilter (419/548) [CC] tmp/cmd/mredit.o (420/548) [LB] bin/mredit (421/548) [CC] tmp/cmd/mrdump.o (422/548) [LB] bin/mrdump (423/548) [CC] tmp/cmd/mrdegibbs.o (424/548) [LB] bin/mrdegibbs (425/548) [CC] tmp/cmd/mrconvert.o (426/548) [LB] bin/mrconvert (427/548) [CC] tmp/cmd/mrcolour.o (428/548) [LB] bin/mrcolour (429/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (430/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (431/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (432/548) [LB] bin/mrclusterstats (433/548) [CC] tmp/cmd/mrcheckerboardmask.o (434/548) [LB] bin/mrcheckerboardmask (435/548) [CC] tmp/cmd/mrcentroid.o (436/548) [LB] bin/mrcentroid (437/548) [CC] tmp/cmd/mrcat.o (438/548) [LB] bin/mrcat (439/548) [CC] tmp/cmd/mrcalc.o (440/548) [LB] bin/mrcalc (441/548) [CC] tmp/cmd/mraverageheader.o (442/548) [LB] bin/mraverageheader (443/548) [CC] tmp/src/surface/filter/smooth.o (444/548) [CC] tmp/cmd/meshfilter.o (445/548) [CC] tmp/src/surface/filter/base.o (446/548) [LB] bin/meshfilter (447/548) [CC] tmp/cmd/meshconvert.o (448/548) [CC] tmp/src/surface/filter/vertex_transform.o (449/548) [LB] bin/meshconvert (450/548) [CC] tmp/src/surface/algo/mesh2image.o (451/548) [CC] tmp/cmd/mesh2voxel.o (452/548) [LB] bin/mesh2voxel (453/548) [CC] tmp/cmd/maskfilter.o (454/548) [LB] bin/maskfilter (455/548) [CC] tmp/cmd/maskdump.o (456/548) [LB] bin/maskdump (457/548) [CC] tmp/cmd/labelstats.o (458/548) [LB] bin/labelstats (459/548) [CC] tmp/cmd/labelconvert.o (460/548) [LB] bin/labelconvert (461/548) [CC] tmp/cmd/label2mesh.o (462/548) [LB] bin/label2mesh (463/548) [CC] tmp/cmd/label2colour.o (464/548) [LB] bin/label2colour (465/548) [CC] tmp/cmd/fod2fixel.o (466/548) [LB] bin/fod2fixel (467/548) [CC] tmp/cmd/fod2dec.o (468/548) [LB] bin/fod2dec (469/548) [CC] tmp/cmd/fixelreorient.o (470/548) [LB] bin/fixelreorient (471/548) [CC] tmp/src/fixel/index_remapper.o (472/548) [CC] tmp/cmd/fixelfilter.o (473/548) [CC] tmp/src/fixel/filter/connect.o (474/548) [CC] tmp/src/fixel/filter/smooth.o (475/548) [CC] tmp/src/stats/cfe.o (476/548) [CC] tmp/src/fixel/matrix.o (477/548) [LB] bin/fixelfilter (478/548) [CC] tmp/cmd/fixelcrop.o (479/548) [LB] bin/fixelcrop (480/548) [CC] tmp/cmd/fixelcorrespondence.o (481/548) [LB] bin/fixelcorrespondence (482/548) [CC] tmp/cmd/fixelconvert.o (483/548) [LB] bin/fixelconvert (484/548) [CC] tmp/cmd/fixelconnectivity.o (485/548) [LB] bin/fixelconnectivity (486/548) [CC] tmp/cmd/fixelcfestats.o (487/548) [LB] bin/fixelcfestats (488/548) [CC] tmp/cmd/fixel2voxel.o (489/548) [LB] bin/fixel2voxel (490/548) [CC] tmp/cmd/fixel2tsf.o (491/548) [LB] bin/fixel2tsf (492/548) [CC] tmp/cmd/fixel2sh.o (493/548) [LB] bin/fixel2sh (494/548) [CC] tmp/cmd/fixel2peaks.o (495/548) [LB] bin/fixel2peaks (496/548) [CC] tmp/cmd/dwiextract.o (497/548) [LB] bin/dwiextract (498/548) [CC] tmp/cmd/dwidenoise.o (499/548) [LB] bin/dwidenoise (500/548) [CC] tmp/cmd/dwi2tensor.o (501/548) [LB] bin/dwi2tensor (502/548) [CC] tmp/cmd/dwi2mask.o (503/548) [LB] bin/dwi2mask (504/548) [CC] tmp/src/dwi/sdeconv/csd.o (505/548) [CC] tmp/cmd/dwi2fod.o (506/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o (507/548) [LB] bin/dwi2fod (508/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:580, from /usr/include/c++/16/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (509/548) [LB] bin/dwi2adc (510/548) [CC] tmp/cmd/dirstat.o (511/548) [LB] bin/dirstat (512/548) [CC] tmp/cmd/dirsplit.o (513/548) [LB] bin/dirsplit (514/548) [CC] tmp/cmd/dirorder.o (515/548) [LB] bin/dirorder (516/548) [CC] tmp/cmd/dirmerge.o (517/548) [LB] bin/dirmerge (518/548) [CC] tmp/cmd/dirgen.o (519/548) [LB] bin/dirgen (520/548) [CC] tmp/cmd/dirflip.o (521/548) [LB] bin/dirflip (522/548) [CC] tmp/cmd/dcminfo.o (523/548) [LB] bin/dcminfo (524/548) [CC] tmp/cmd/dcmedit.o (525/548) [LB] bin/dcmedit (526/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (527/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/548) [LB] bin/connectomestats (529/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (530/548) [LB] bin/connectomeedit (531/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (532/548) [CC] tmp/src/dwi/tractography/connectome/extract.o (533/548) [CC] tmp/cmd/connectome2tck.o (534/548) [LB] bin/connectome2tck (535/548) [CC] tmp/cmd/amp2sh.o (536/548) [LB] bin/amp2sh (537/548) [CC] tmp/cmd/amp2response.o (538/548) [LB] bin/amp2response (539/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (540/548) [LB] bin/afdconnectivity (541/548) [CC] tmp/cmd/5ttedit.o (542/548) [LB] bin/5ttedit (543/548) [CC] tmp/cmd/5ttcheck.o (544/548) [LB] bin/5ttcheck (545/548) [CC] tmp/cmd/5tt2vis.o (546/548) [LB] bin/5tt2vis (547/548) [CC] tmp/cmd/5tt2gmwmi.o (548/548) [LB] bin/5tt2gmwmi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5oUBWO + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + binary_name=mrview + '[' mrview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + binary_name=shview + '[' shview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + grep -q python + desktop-file-install --dir=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications --set-key=Version --set-value=1.0 --remove-key=Value --set-key=Keywords '--set-value=MRI;diffusion;tractography;DWI;neuroimaging;' --set-key=Categories '--set-value=Science;MedicalSoftware;' mrview.desktop + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/16x16/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/32x32/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/48x48/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/64x64/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/128x128/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/application-x-mrtrix.png + cat + install -Dpm0644 mrtrix3-mime.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/mime/packages/mrtrix3.xml + /usr/bin/find-debuginfo -j1 --strict-build-id -m -i --build-id-seed 3.0.8-5.fc44 --unique-debug-suffix -3.0.8-5.fc44.aarch64 --unique-debug-src-base mrtrix3-3.0.8-5.fc44.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 113 files DWARF-compressing 113 files sepdebugcrcfix: Updated 113 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-5.fc44.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-5.fc44.aarch64/eigen-3.4.0/Eigen/src/Core/util/Meta.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-5.fc44.aarch64/eigen-3.4.0/Eigen/src/Core/util/BlasUtil.h is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 152 directories and 1396 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr Scanned 151 directories and 1396 files, considered 1266 files, read 73 files, linked 3 files, 0 errors sum of sizes of linked files: 0 bytes Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.OUcKiY + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + desktop-file-validate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications/mrview.desktop + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-5.fc44.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lC1VjY + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Et8YlV + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: application() application(mrview.desktop) bundled(eigen3) = 3.4.0 libmrtrix.so()(64bit) mimehandler(application/x-image-analyze) mimehandler(application/x-image-mgh) mimehandler(application/x-image-mgz) mimehandler(application/x-mrtrix) mimehandler(application/x-mrtrix-gz) mimehandler(application/x-nifti) mimehandler(application/x-nifti-gz) mrtrix3 = 3.0.8-5.fc44 mrtrix3(aarch-64) = 3.0.8-5.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmrtrix.so()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: mrtrix3-debugsource-3.0.8-5.fc44.aarch64 Provides: mrtrix3-debugsource = 3.0.8-5.fc44 mrtrix3-debugsource(aarch-64) = 3.0.8-5.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-5.fc44.aarch64 Provides: debuginfo(build-id) = 040ade696ad6ac00d997a035e94c418b59469d91 debuginfo(build-id) = 056158063fb04eb0a9f1798de9b00a9172ba0813 debuginfo(build-id) = 07945ad018243f1d402aa2a88a073258d38d0c65 debuginfo(build-id) = 0bbbb8f0e72b647afff5f6c4d9bad7e3f4035d1d debuginfo(build-id) = 0c354a5783eb62f160ffb459188a3d91d411f4ab debuginfo(build-id) = 1a9c3c9adbe22b857b35429845933adfcd950190 debuginfo(build-id) = 1cc61740f1f3da0582a2557a1bd06eb50852f23b debuginfo(build-id) = 1ccaa98dc9ad96ec1d934c1ac098014312e566a4 debuginfo(build-id) = 1dc09b322f35649a7814e06832c88508809bf0a5 debuginfo(build-id) = 1fc4debd8d260ac8b5578bb0a90c899388092b4e debuginfo(build-id) = 267d80c6fb67e46afe7b64e5ab5d9c7d303a596b debuginfo(build-id) = 26d9e0e750c88eafb26c8b00d3ed7f50cf2b1160 debuginfo(build-id) = 2bb77677368d919e26a09471bd9c5c8b798eaf91 debuginfo(build-id) = 2ed9fd88ccee5adac91535f254d2fcb35b78adb3 debuginfo(build-id) = 3107029c1c9fcd1b31eb2412abd23f7ca865b4d5 debuginfo(build-id) = 315dc6c389c6127d75d5e095df859b544c342b81 debuginfo(build-id) = 3380a6e334b255d5c6d35cc6b8af89c309216d1d debuginfo(build-id) = 3d4f92ff21401559b54563af8078fe813301a6ff debuginfo(build-id) = 3f252053a68c3db9260df69f3646663508af0ffa debuginfo(build-id) = 4026fe8f105f782776e38b9a6ae1c322fa73feeb debuginfo(build-id) = 41f1eb89f3ad98f2a818f4c8a13093beb3c01427 debuginfo(build-id) = 420a48900129ab2fb8b4e0d1587527bb32d44779 debuginfo(build-id) = 43d66b7903b6044483d235e975200c17ab2934a3 debuginfo(build-id) = 45bf2c76f17c3be20f6d6e22b2bed1ffe6891f7b debuginfo(build-id) = 45d7fb4207150afcd904a2cb64bb89ff7d1e74b7 debuginfo(build-id) = 4bc0bac5ba331aad5a6bb43630d4a104f581479c debuginfo(build-id) = 4d98ef45ea5d937d5091dd7f3a0a65669ac43874 debuginfo(build-id) = 4fabba116d86ce442b792b26c9af1c116b7238be debuginfo(build-id) = 501d3d63c2e3b89c42c14f8ceb0d016a63ed0d82 debuginfo(build-id) = 506976c4726902a9271a69e18319ca9c11b30304 debuginfo(build-id) = 553d2f8b313ce1e30800629bf315571708df3d24 debuginfo(build-id) = 56117caa5fdb4a48ed0c9cdb51dec74c5ac3a57d debuginfo(build-id) = 5667a20f7a732689c764dbd4104753fe19ba7f36 debuginfo(build-id) = 580a600ba5064bb84055c113afec3b6ef9b1ef6c debuginfo(build-id) = 5886bd01f0812392d865df7e565d542ef6e12aab debuginfo(build-id) = 5d1f7c93fb45ff23412fc3babdf86a10f8136223 debuginfo(build-id) = 5eaf2dda6c7d0a3f305b9a702a24f9a236e32a5c debuginfo(build-id) = 5f835bb8413d2f1eeebc130af6d7ff865e5ac2e6 debuginfo(build-id) = 6104f78e2dda29928bfc45ac96598935a13f01e7 debuginfo(build-id) = 61f49cd9b1fe6e2b5b99b92de44675a049fc57fe debuginfo(build-id) = 629ba56e966309c98424a1f3a50a044c7b9febeb debuginfo(build-id) = 6375da2cc1e54c0057865be0279307bc2a952fbd debuginfo(build-id) = 63a8ac4fd18d862c891b189132890fcd9a31a079 debuginfo(build-id) = 6457a4e9d0d06380d34eca770c454fd163b11475 debuginfo(build-id) = 675f7c101f8a4d4a1d53bf8c8d996d1187865bfa debuginfo(build-id) = 6a78f2e12b71a5dd0326e9da89f92999284b73f9 debuginfo(build-id) = 6f9ef61de5073cb25bf54171ecf9b41759128e60 debuginfo(build-id) = 708d4b048a738606e296ddc837c4bac6789f78a4 debuginfo(build-id) = 761fc6a8e20f15ef8bd1884e15485cecafe83a26 debuginfo(build-id) = 77e70ce639cd15268b220320de6a5d233248d654 debuginfo(build-id) = 7dcb1555e092d05e45d0571acdcefb1af76f3439 debuginfo(build-id) = 7ec396579c71f9a0b1cca1b78600965336dc7d2c debuginfo(build-id) = 7ed726a8fc74183450644ee97f0c4fc0a1aa956a debuginfo(build-id) = 7fe97fe52ff64ed875bb499b31db96a6dd74f405 debuginfo(build-id) = 833a968e960d38586d7f7b2e2cdef31a0d12bc67 debuginfo(build-id) = 86145a795b0e2fdc83c5c367a61862bd225f0c15 debuginfo(build-id) = 8a8a826aef6359bfde0f3fb3ed6ae5a4cd393cdc debuginfo(build-id) = 8b9473f6bdb24b4ccfe711801f9092f2a35270b0 debuginfo(build-id) = 8d27ccc3da40ec1d3e223d40c025d2cac6b794e8 debuginfo(build-id) = 8fd2c6092cb447cf14b9b53987c6cea5f50594d7 debuginfo(build-id) = 901894f585028a0225387affb71bbf5d27dd71ec debuginfo(build-id) = 926eac39cf87f83c5ec799c46bbd3434b89c5159 debuginfo(build-id) = 95e2023f121cbef4e8934ad45e7e25194f847dd8 debuginfo(build-id) = 960af2a8ef349cb1b9858c3804fb668609c1faa9 debuginfo(build-id) = 964a2657173b6b4838303b9fc09c0a592c53fe02 debuginfo(build-id) = 99b94bcb3df3df7676ed3e573e7cff4c623c729b debuginfo(build-id) = 9ae455b4c471df2ff4f142da5732ca6f65a30b5e debuginfo(build-id) = a04b7e6997f1d815600cb6cb0345358efa6c3e24 debuginfo(build-id) = a329a77ebc2ca30102f6846ca8120a22767c05d1 debuginfo(build-id) = a69ad89fdf582e1045ba6da5bba712450ee3c716 debuginfo(build-id) = a95b59c132f4780ad71358389b177c3b74f60d1f debuginfo(build-id) = a9eb6681f1db432c78334a82e20fccdf59ef3b51 debuginfo(build-id) = b025979a6237e52921d6ecb18a8759a7efc3bb49 debuginfo(build-id) = b032ba7d025a01f02f1dd8113dc4366e48508fd7 debuginfo(build-id) = b1102aac3ba142eea377de29b40304af2acdcce3 debuginfo(build-id) = b3be5cc2082d591a5f48fef382d9d6bb7dbadfe1 debuginfo(build-id) = b3f1ff3020c8530f0df0ad1be6dc219a16d08c32 debuginfo(build-id) = b7053fd310e73cfefc10e32be433f76cb59e75bb debuginfo(build-id) = b966a46aa6ea49fa4210a58292ea733310f43fbb debuginfo(build-id) = ba6b00ab44636452d0149b1c15d28dd869a8b636 debuginfo(build-id) = bc8e281aa66aec856156427e075adfeb01291957 debuginfo(build-id) = bcfe63f88ca16b3e611ac5a9edafcff0b16df51e debuginfo(build-id) = bf240257d914a7a18b1c7b5b9533e6c121223b92 debuginfo(build-id) = bfce9c7c0dcbdeb3c82540c1199b06e4cd8aeb54 debuginfo(build-id) = c15c52c27e4130e036ac157aa5e44831643bc12d debuginfo(build-id) = c4fb6872f6a2391a36a2b1fd8df84826a45a0b27 debuginfo(build-id) = c5befa7ba7e81ee57210a2210543ffccb826e37c debuginfo(build-id) = c5d4a18af1eeaea18044339fc2fc2cbcdc0c3e83 debuginfo(build-id) = c7385175dcbbfa17e5a5158af06c7bcf81c168a6 debuginfo(build-id) = c7bcafff9176f3530d3a9d9c530bb39657a559d2 debuginfo(build-id) = c8eaee5b41c3f85b0db827a5d4e14527f46467b4 debuginfo(build-id) = c9eb7ad0d8750226b9c58417aa5ce903b9810a1d debuginfo(build-id) = cbaf75e70ce758cd0c649d8ff416c5accd8a3b8a debuginfo(build-id) = d4cf6707a8c99282e4c61617ca65f94477a67aed debuginfo(build-id) = d59a18e82f6f6948dece0a0b57558de47669a3b3 debuginfo(build-id) = d65163eb25a4904d90f11f11f35dbfe30b90502f debuginfo(build-id) = d822961f112994406b032c0572705ff3b7540153 debuginfo(build-id) = db2aa5cafa17e6fd14c96a5dbf900387a86c4692 debuginfo(build-id) = db6d18c9fade7e45b311d4315409e3c88455f784 debuginfo(build-id) = dbcb6f555252cd7924fa8d428c0668a9e4f79131 debuginfo(build-id) = dc401b97da5f5b683cf2402ad6d3a7fb5c67c41a debuginfo(build-id) = e005cbc4de1f2d3bc60b30e3d7addb901ebd24e3 debuginfo(build-id) = e09133c3393143b0b3c8dc13843c5197081b3d7e debuginfo(build-id) = e70a468cdefdc2c8ddf8e1801d0303c8897d4216 debuginfo(build-id) = e759f908438d280f0b60de667192bc1c49db591f debuginfo(build-id) = e9129622ab6f3600256773daeb232c60ae534d31 debuginfo(build-id) = e9405fa36fa8dca28b3f97c237088f09c2bc58bc debuginfo(build-id) = ea03786592c147387a318ff33a737fa34aec7c45 debuginfo(build-id) = ea222c3b14b97bebf89abb562a47b464cf470efd debuginfo(build-id) = f1b094a7c051ba8c63f8378a5dd563da61e76be6 debuginfo(build-id) = f30d13b44df277ad669b92dc231cf5b9ef923f72 debuginfo(build-id) = fc4f9b44676a7430b7a2a36a85eb492176f5f29a debuginfo(build-id) = fcd21134f5b5558ef73e338520c21abbe2e85ec2 libmrtrix.so-3.0.8-5.fc44.aarch64.debug()(64bit) mrtrix3-debuginfo = 3.0.8-5.fc44 mrtrix3-debuginfo(aarch-64) = 3.0.8-5.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(aarch-64) = 3.0.8-5.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-5.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-5.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-5.fc44.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.UZQ3We + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + test -d /builddir/build/BUILD/mrtrix3-3.0.8-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-5.fc44.src.rpm Finish: build phase for mrtrix3-3.0.8-5.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-aarch64-1790633979.509862/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-5.fc44.src.rpm) Config(child) 92 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "aarch64" }, { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "aarch64" }, { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "aarch64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "src" } ] } RPMResults finished