Warning: Permanently added '44.203.160.188' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11064773-fedora-44-aarch64 --chroot fedora-44-aarch64 Version: 1.10 PID: 11863 Logging PID: 11865 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11064773, 'buildroot_pkgs': [], 'chroot': 'fedora-44-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd8fae0aead8e9c972cf8ddabc66e1e2568b58d65', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-7', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-44-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '11064773-fedora-44-aarch64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3'... Running: git checkout d8fae0aead8e9c972cf8ddabc66e1e2568b58d65 -- cmd: ['git', 'checkout', 'd8fae0aead8e9c972cf8ddabc66e1e2568b58d65', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3 rc: 0 stdout: stderr: Note: switching to 'd8fae0aead8e9c972cf8ddabc66e1e2568b58d65'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d8fae0a automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading eigen-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o eigen-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/eigen-3.4.0.tar.gz/md5/4c527a9171d71a72a9d4186e65bea559/eigen-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2.57M 100 2.57M 0 0 24.11M 0 0 INFO: Reading stdout from command: md5sum eigen-3.4.0.tar.gz INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3.86M 100 3.86M 0 0 24.69M 0 0 INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790964586.274326 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790964586.274326 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3/mrtrix3.spec) Config(fedora-44-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-bootstrap-1790964586.274326/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:44 INFO: Pulling image: registry.fedoraproject.org/fedora:44 INFO: Tagging container image as mock-bootstrap-d43a435a-13a9-4871-a651-b73d3c8922f0 INFO: Checking that 7ffd9429ac0c42bc5c5561677891bd98c17374d11ae2d8a9966d7bff1f2a3604 image matches host's architecture INFO: Copy content of container 7ffd9429ac0c42bc5c5561677891bd98c17374d11ae2d8a9966d7bff1f2a3604 to /var/lib/mock/fedora-44-aarch64-bootstrap-1790964586.274326/root INFO: mounting 7ffd9429ac0c42bc5c5561677891bd98c17374d11ae2d8a9966d7bff1f2a3604 with podman image mount INFO: image 7ffd9429ac0c42bc5c5561677891bd98c17374d11ae2d8a9966d7bff1f2a3604 as /var/lib/containers/storage/overlay/936ade0d6e70e6ff1ee95c0cb9fa23af05e63f487111a205243a95474603295a/merged INFO: umounting image 7ffd9429ac0c42bc5c5561677891bd98c17374d11ae2d8a9966d7bff1f2a3604 (/var/lib/containers/storage/overlay/936ade0d6e70e6ff1ee95c0cb9fa23af05e63f487111a205243a95474603295a/merged) with podman image umount INFO: Removing image mock-bootstrap-d43a435a-13a9-4871-a651-b73d3c8922f0 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-1790964586.274326/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.aarch64 rpm-sequoia-1.10.3-1.fc44.aarch64 dnf5-5.4.6.0-1.fc44.aarch64 dnf5-plugins-5.4.6.0-1.fc44.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 8.2 MiB/s | 11.5 MiB | 00m01s Copr repository 100% | 417.4 KiB/s | 545.5 KiB | 00m01s fedora 100% | 30.9 MiB/s | 65.0 MiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 0:5.3.9-3.fc44 fedora 8.4 MiB bzip2 aarch64 0:1.0.8-23.fc44 fedora 171.1 KiB coreutils aarch64 0:9.10-5.fc44 updates 8.2 MiB cpio aarch64 0:2.15-9.fc44 fedora 1.1 MiB diffutils aarch64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:44-18 updates 20.6 KiB findutils aarch64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk aarch64 0:5.3.2-3.fc44 fedora 2.6 MiB glibc-minimal-langpack aarch64 0:2.43-9.fc44 updates 0.0 B grep aarch64 0:3.12-3.fc44 fedora 1.0 MiB gzip aarch64 0:1.14-2.fc44 fedora 437.5 KiB info aarch64 0:7.2-9.fc44 fedora 421.5 KiB patch aarch64 0:2.8-4.fc44 fedora 262.4 KiB redhat-rpm-config noarch 0:344-2.fc44 updates 183.7 KiB rpm-build aarch64 0:6.0.2-1.fc44 updates 598.7 KiB sed aarch64 0:4.9-7.fc44 fedora 873.1 KiB shadow-utils aarch64 2:4.19.0-7.fc44 updates 4.4 MiB tar aarch64 2:1.35-9.fc44 updates 3.0 MiB unzip aarch64 0:6.0-69.fc44 fedora 533.8 KiB util-linux aarch64 0:2.41.5-1.fc44 updates 6.8 MiB which aarch64 0:2.25-1.fc44 updates 123.6 KiB xz aarch64 1:5.8.2-2.fc44 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc44 updates 3.5 KiB add-determinism aarch64 0:0.7.3-2.fc44 updates 2.0 MiB alternatives aarch64 0:1.33-5.fc44 fedora 90.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs aarch64 0:4.2.1-1.fc44 updates 486.7 KiB binutils aarch64 0:2.46.1-1.fc44 updates 31.5 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc44 updates 1.2 KiB bzip2-libs aarch64 0:1.0.8-23.fc44 fedora 72.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc44 updates 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-1.fc44 fedora 524.0 B coreutils-common aarch64 0:9.10-5.fc44 updates 10.7 MiB crypto-policies noarch 0:20251128-3.git19878fe.fc44 fedora 132.6 KiB curl aarch64 0:8.18.0-10.fc44 updates 464.2 KiB cyrus-sasl-lib aarch64 0:2.1.28-35.fc44 fedora 2.4 MiB debugedit aarch64 0:5.3-2.fc44 updates 320.9 KiB dwz aarch64 0:0.16-3.fc44 fedora 322.4 KiB ed aarch64 0:1.22.5-2.fc44 fedora 157.8 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils aarch64 0:0.196-1.fc44 updates 3.8 MiB elfutils-debuginfod-client aarch64 0:0.196-1.fc44 updates 144.0 KiB elfutils-default-yama-scope noarch 0:0.196-1.fc44 updates 1.8 KiB elfutils-libelf aarch64 0:0.196-1.fc44 updates 1.5 MiB elfutils-libs aarch64 0:0.196-1.fc44 updates 746.6 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc44 fedora 1.9 KiB fedora-gpg-keys noarch 0:44-2 updates 257.6 KiB fedora-release noarch 0:44-18 updates 0.0 B fedora-release-identity-basic noarch 0:44-18 updates 629.0 B fedora-repos noarch 0:44-2 updates 4.9 KiB file aarch64 0:5.46-10.fc44 updates 140.1 KiB file-libs aarch64 0:5.46-10.fc44 updates 11.9 MiB filesystem aarch64 0:3.18-52.fc44 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-52.fc44 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-2.fc44 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal aarch64 0:17.2-4.fc44 updates 13.5 MiB gdbm-libs aarch64 1:1.23-11.fc44 fedora 233.7 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc aarch64 0:2.43-9.fc44 updates 6.4 MiB glibc-common aarch64 0:2.43-9.fc44 updates 1.3 MiB glibc-gconv-extra aarch64 0:2.43-9.fc44 updates 18.5 MiB gmp aarch64 1:6.3.0-5.fc44 fedora 657.9 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc44 updates 3.5 KiB gnulib-l10n noarch 0:20241231-2.fc44 fedora 655.0 KiB gnupg2 aarch64 0:2.4.9-16.fc44 updates 6.4 MiB gnupg2-dirmngr aarch64 0:2.4.9-16.fc44 updates 646.1 KiB gnupg2-gpg-agent aarch64 0:2.4.9-16.fc44 updates 846.9 KiB gnupg2-gpgconf aarch64 0:2.4.9-16.fc44 updates 321.8 KiB gnupg2-keyboxd aarch64 0:2.4.9-16.fc44 updates 233.3 KiB gnupg2-verify aarch64 0:2.4.9-16.fc44 updates 364.3 KiB gnutls aarch64 0:3.8.13-1.fc44 updates 3.7 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs aarch64 0:1.6.2-8.fc44 fedora 92.6 KiB jansson aarch64 0:2.14-4.fc44 fedora 93.0 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c aarch64 0:0.18-8.fc44 fedora 138.5 KiB kernel-srpm-macros noarch 0:1.0-28.fc44 fedora 1.9 KiB keyutils-libs aarch64 0:1.6.3-7.fc44 fedora 98.2 KiB krb5-libs aarch64 0:1.22.2-4.fc44 updates 2.5 MiB libacl aarch64 0:2.4.0-1.fc44 updates 67.9 KiB libarchive aarch64 0:3.8.7-1.fc44 updates 975.5 KiB libassuan aarch64 0:2.5.7-5.fc44 fedora 215.8 KiB libattr aarch64 0:2.6.0-1.fc44 updates 68.4 KiB libblkid aarch64 0:2.41.5-1.fc44 updates 290.4 KiB libbrotli aarch64 0:1.2.0-3.fc44 fedora 909.1 KiB libcap aarch64 0:2.78-1.fc44 updates 508.4 KiB libcap-ng aarch64 0:0.9.6-1.fc44 updates 160.9 KiB libcbor aarch64 0:0.13.0-2.fc44 fedora 139.5 KiB libcom_err aarch64 0:1.47.3-4.fc44 fedora 111.0 KiB libcurl aarch64 0:8.18.0-10.fc44 updates 980.8 KiB libeconf aarch64 0:0.7.9-3.fc44 fedora 80.8 KiB libevent aarch64 0:2.1.13-1.fc44 updates 1.1 MiB libfdisk aarch64 0:2.41.5-1.fc44 updates 418.8 KiB libffi aarch64 0:3.5.2-2.fc44 fedora 155.7 KiB libfido2 aarch64 0:1.16.0-5.fc44 fedora 278.6 KiB libfsverity aarch64 0:1.6-4.fc44 fedora 68.4 KiB libgcc aarch64 0:16.2.1-2.fc44 updates 222.3 KiB libgcrypt aarch64 0:1.12.2-1.fc44 updates 1.2 MiB libgomp aarch64 0:16.2.1-2.fc44 updates 592.9 KiB libgpg-error aarch64 0:1.58-2.fc44 fedora 989.6 KiB libidn2 aarch64 0:2.3.8-3.fc44 fedora 560.4 KiB libksba aarch64 0:1.6.7-5.fc44 fedora 398.3 KiB liblastlog2 aarch64 0:2.41.5-1.fc44 updates 137.8 KiB libmount aarch64 0:2.41.5-1.fc44 updates 420.2 KiB libnghttp2 aarch64 0:1.68.0-5.fc44 updates 197.9 KiB libnghttp3 aarch64 0:1.18.0-1.fc44 updates 206.8 KiB libpfm aarch64 0:4.13.0-20.fc44 updates 251.9 KiB libpkgconf aarch64 0:2.5.1-1.fc44 fedora 134.1 KiB libpsl aarch64 0:0.21.5-7.fc44 fedora 132.3 KiB libselinux aarch64 0:3.11-2.fc44 updates 265.2 KiB libselinux-utils aarch64 0:3.11-2.fc44 updates 1.3 MiB libsemanage aarch64 0:3.11-1.fc44 updates 360.1 KiB libsepol aarch64 0:3.11-1.fc44 updates 809.9 KiB libsmartcols aarch64 0:2.41.5-1.fc44 updates 224.4 KiB libssh aarch64 0:0.12.2-1.fc44 updates 721.3 KiB libssh-config noarch 0:0.12.2-1.fc44 updates 277.0 B libstdc++ aarch64 0:16.2.1-2.fc44 updates 3.0 MiB libtasn1 aarch64 0:4.21.0-1.fc44 fedora 220.7 KiB libtool-ltdl aarch64 0:2.5.4-10.fc44 fedora 93.9 KiB libunistring aarch64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 aarch64 0:1.0.30-1.fc44 updates 179.7 KiB libuuid aarch64 0:2.41.5-1.fc44 updates 69.3 KiB libverto aarch64 0:0.3.2-12.fc44 fedora 69.3 KiB libxcrypt aarch64 0:4.5.2-3.fc44 fedora 273.2 KiB libxml2 aarch64 0:2.12.10-6.fc44 fedora 1.9 MiB libzstd aarch64 0:1.5.7-5.fc44 fedora 860.2 KiB linkdupes aarch64 0:0.7.3-2.fc44 updates 713.7 KiB lua-libs aarch64 0:5.4.8-5.fc44 fedora 329.8 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs aarch64 0:1.10.0-4.fc44 fedora 197.3 KiB mpfr aarch64 0:4.2.2-3.fc44 fedora 755.4 KiB ncurses-base noarch 0:6.6-1.fc44 fedora 329.7 KiB ncurses-libs aarch64 0:6.6-1.fc44 fedora 1.2 MiB nettle aarch64 0:3.10.1-3.fc44 fedora 765.0 KiB ngtcp2 aarch64 0:1.22.1-1.fc44 updates 341.1 KiB ngtcp2-crypto-ossl aarch64 0:1.22.1-1.fc44 updates 67.5 KiB npth aarch64 0:1.8-4.fc44 fedora 93.3 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap aarch64 0:2.6.14-1.fc44 updates 765.0 KiB openssl-libs aarch64 1:3.5.8-1.fc44 updates 7.4 MiB p11-kit aarch64 0:0.26.5-1.fc44 updates 2.8 MiB p11-kit-trust aarch64 0:0.26.5-1.fc44 updates 530.1 KiB package-notes-srpm-macros noarch 0:0.20-1.fc44 updates 1.6 KiB pam-libs aarch64 0:1.7.2-2.fc44 updates 222.7 KiB pcre2 aarch64 0:10.47-1.fc44.1 fedora 714.3 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf aarch64 0:2.5.1-1.fc44 fedora 116.8 KiB pkgconf-m4 noarch 0:2.5.1-1.fc44 fedora 14.3 KiB pkgconf-pkg-config aarch64 0:2.5.1-1.fc44 fedora 990.0 B policycoreutils aarch64 0:3.11-2.fc44 updates 1.5 MiB popt aarch64 0:1.19-10.fc44 fedora 144.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc44 updates 3.4 KiB python-srpm-macros noarch 0:3.14-12.fc44 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc44 updates 472.0 B readline aarch64 0:8.3-4.fc44 fedora 563.5 KiB rpm aarch64 0:6.0.2-1.fc44 updates 3.3 MiB rpm-build-libs aarch64 0:6.0.2-1.fc44 updates 264.1 KiB rpm-libs aarch64 0:6.0.2-1.fc44 updates 995.2 KiB rpm-plugin-selinux aarch64 0:6.0.2-1.fc44 updates 67.9 KiB rpm-sequoia aarch64 0:1.10.3-1.fc44 updates 2.3 MiB rpm-sign-libs aarch64 0:6.0.2-1.fc44 updates 67.7 KiB rust-srpm-macros noarch 0:28.5-1.fc44 updates 5.5 KiB selinux-policy noarch 0:44.10-1.fc44 updates 32.1 KiB selinux-policy-targeted noarch 0:44.10-1.fc44 updates 18.6 MiB setup noarch 0:2.15.0-28.fc44 fedora 724.9 KiB sqlite-libs aarch64 0:3.51.2-2.fc44 updates 1.6 MiB systemd-libs aarch64 0:259.9-1.fc44 updates 2.5 MiB systemd-standalone-sysusers aarch64 0:259.9-1.fc44 updates 329.6 KiB tpm2-tss aarch64 0:4.1.3-9.fc44 fedora 2.1 MiB tree-sitter-srpm-macros noarch 0:0.4.2-2.fc44 fedora 8.3 KiB util-linux-core aarch64 0:2.41.5-1.fc44 updates 2.4 MiB xxhash-libs aarch64 0:0.8.3-4.fc44 fedora 85.8 KiB xz-libs aarch64 1:5.8.2-2.fc44 fedora 265.4 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip aarch64 0:3.0-45.fc44 fedora 762.0 KiB zlib-ng-compat aarch64 0:2.3.3-3.fc44 fedora 133.4 KiB zstd aarch64 0:1.5.7-5.fc44 fedora 562.2 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 186 packages Total size of inbound packages is 67 MiB. Need to download 67 MiB. After this operation, 251 MiB extra will be used (install 251 MiB, remove 0 B). [ 1/186] bzip2-0:1.0.8-23.fc44.aarch64 100% | 493.8 KiB/s | 51.9 KiB | 00m00s [ 2/186] cpio-0:2.15-9.fc44.aarch64 100% | 2.1 MiB/s | 289.7 KiB | 00m00s [ 3/186] bash-0:5.3.9-3.fc44.aarch64 100% | 8.3 MiB/s | 1.8 MiB | 00m00s [ 4/186] findutils-1:4.10.0-7.fc44.aar 100% | 2.8 MiB/s | 552.0 KiB | 00m00s [ 5/186] diffutils-0:3.12-5.fc44.aarch 100% | 1.7 MiB/s | 391.9 KiB | 00m00s [ 6/186] gawk-0:5.3.2-3.fc44.aarch64 100% | 6.7 MiB/s | 1.1 MiB | 00m00s [ 7/186] grep-0:3.12-3.fc44.aarch64 100% | 3.0 MiB/s | 296.3 KiB | 00m00s [ 8/186] gzip-0:1.14-2.fc44.aarch64 100% | 1.4 MiB/s | 172.8 KiB | 00m00s [ 9/186] info-0:7.2-9.fc44.aarch64 100% | 2.7 MiB/s | 179.0 KiB | 00m00s [ 10/186] patch-0:2.8-4.fc44.aarch64 100% | 2.0 MiB/s | 111.1 KiB | 00m00s [ 11/186] sed-0:4.9-7.fc44.aarch64 100% | 3.7 MiB/s | 314.8 KiB | 00m00s [ 12/186] unzip-0:6.0-69.fc44.aarch64 100% | 2.3 MiB/s | 200.9 KiB | 00m00s [ 13/186] xz-1:5.8.2-2.fc44.aarch64 100% | 5.3 MiB/s | 606.6 KiB | 00m00s [ 14/186] fedora-release-common-0:44-18 100% | 129.0 KiB/s | 23.6 KiB | 00m00s [ 15/186] glibc-minimal-langpack-0:2.43 100% | 349.8 KiB/s | 85.4 KiB | 00m00s [ 16/186] redhat-rpm-config-0:344-2.fc4 100% | 634.6 KiB/s | 78.1 KiB | 00m00s [ 17/186] rpm-build-0:6.0.2-1.fc44.aarc 100% | 1.0 MiB/s | 130.6 KiB | 00m00s [ 18/186] coreutils-0:9.10-5.fc44.aarch 100% | 2.0 MiB/s | 1.1 MiB | 00m01s [ 19/186] tar-2:1.35-9.fc44.aarch64 100% | 4.5 MiB/s | 855.9 KiB | 00m00s [ 20/186] shadow-utils-2:4.19.0-7.fc44. 100% | 4.2 MiB/s | 1.3 MiB | 00m00s [ 21/186] which-0:2.25-1.fc44.aarch64 100% | 681.3 KiB/s | 41.6 KiB | 00m00s [ 22/186] util-linux-0:2.41.5-1.fc44.aa 100% | 9.6 MiB/s | 1.2 MiB | 00m00s [ 23/186] filesystem-0:3.18-52.fc44.aar 100% | 10.3 MiB/s | 1.3 MiB | 00m00s [ 24/186] ncurses-libs-0:6.6-1.fc44.aar 100% | 3.3 MiB/s | 324.8 KiB | 00m00s [ 25/186] bzip2-libs-0:1.0.8-23.fc44.aa 100% | 404.2 KiB/s | 41.2 KiB | 00m00s [ 26/186] gmp-1:6.3.0-5.fc44.aarch64 100% | 1.3 MiB/s | 271.0 KiB | 00m00s [ 27/186] mpfr-0:4.2.2-3.fc44.aarch64 100% | 1.6 MiB/s | 320.0 KiB | 00m00s [ 28/186] readline-0:8.3-4.fc44.aarch64 100% | 953.2 KiB/s | 221.1 KiB | 00m00s [ 29/186] pcre2-0:10.47-1.fc44.1.aarch6 100% | 3.6 MiB/s | 250.2 KiB | 00m00s [ 30/186] ed-0:1.22.5-2.fc44.aarch64 100% | 982.6 KiB/s | 83.5 KiB | 00m00s [ 31/186] xz-libs-1:5.8.2-2.fc44.aarch6 100% | 1.7 MiB/s | 111.7 KiB | 00m00s [ 32/186] glibc-common-0:2.43-9.fc44.aa 100% | 5.7 MiB/s | 360.3 KiB | 00m00s [ 33/186] coreutils-common-0:9.10-5.fc4 100% | 17.1 MiB/s | 2.1 MiB | 00m00s [ 34/186] ansible-srpm-macros-0:1-20.1. 100% | 1.4 MiB/s | 20.1 KiB | 00m00s [ 35/186] cmake-srpm-macros-0:4.3.0-1.f 100% | 802.7 KiB/s | 10.4 KiB | 00m00s [ 36/186] gnome-srpm-macros-0:1.0-1.fc4 100% | 141.9 KiB/s | 8.7 KiB | 00m00s [ 37/186] dwz-0:0.16-3.fc44.aarch64 100% | 3.8 MiB/s | 131.3 KiB | 00m00s [ 38/186] efi-srpm-macros-0:6-6.fc44.no 100% | 1.6 MiB/s | 22.6 KiB | 00m00s [ 39/186] erlang-srpm-macros-0:0.3.11-1 100% | 765.9 KiB/s | 10.0 KiB | 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125.1 KiB | 00m00s [ 66/186] setup-0:2.15.0-28.fc44.noarch 100% | 3.3 MiB/s | 157.2 KiB | 00m00s [ 67/186] libblkid-0:2.41.5-1.fc44.aarc 100% | 2.0 MiB/s | 122.4 KiB | 00m00s [ 68/186] libfdisk-0:2.41.5-1.fc44.aarc 100% | 2.5 MiB/s | 155.0 KiB | 00m00s [ 69/186] liblastlog2-0:2.41.5-1.fc44.a 100% | 396.4 KiB/s | 24.2 KiB | 00m00s [ 70/186] libmount-0:2.41.5-1.fc44.aarc 100% | 2.6 MiB/s | 159.7 KiB | 00m00s [ 71/186] libsmartcols-0:2.41.5-1.fc44. 100% | 1.3 MiB/s | 83.0 KiB | 00m00s [ 72/186] libuuid-0:2.41.5-1.fc44.aarch 100% | 432.3 KiB/s | 26.4 KiB | 00m00s [ 73/186] util-linux-core-0:2.41.5-1.fc 100% | 8.6 MiB/s | 542.9 KiB | 00m00s [ 74/186] zlib-ng-compat-0:2.3.3-3.fc44 100% | 2.0 MiB/s | 72.4 KiB | 00m00s [ 75/186] ncurses-base-0:6.6-1.fc44.noa 100% | 3.1 MiB/s | 88.0 KiB | 00m00s [ 76/186] pcre2-syntax-0:10.47-1.fc44.1 100% | 9.5 MiB/s | 164.7 KiB | 00m00s [ 77/186] gnulib-l10n-0:20241231-2.fc44 100% | 5.1 MiB/s | 150.3 KiB | 00m00s [ 78/186] pkgconf-0:2.5.1-1.fc44.aarch6 100% | 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libgcc-0:16.2.1-2.fc44.aarch6 100% | 1.9 MiB/s | 117.8 KiB | 00m00s [ 92/186] libstdc++-0:16.2.1-2.fc44.aar 100% | 14.2 MiB/s | 917.8 KiB | 00m00s [ 93/186] libusb1-0:1.0.30-1.fc44.aarch 100% | 1.3 MiB/s | 79.0 KiB | 00m00s [ 94/186] crypto-policies-0:20251128-3. 100% | 3.3 MiB/s | 98.3 KiB | 00m00s [ 95/186] openssl-libs-1:3.5.8-1.fc44.a 100% | 36.9 MiB/s | 2.5 MiB | 00m00s [ 96/186] libacl-0:2.4.0-1.fc44.aarch64 100% | 434.2 KiB/s | 26.5 KiB | 00m00s [ 97/186] libselinux-0:3.11-2.fc44.aarc 100% | 1.6 MiB/s | 99.7 KiB | 00m00s [ 98/186] libattr-0:2.6.0-1.fc44.aarch6 100% | 287.5 KiB/s | 17.5 KiB | 00m00s [ 99/186] elfutils-libelf-0:0.196-1.fc4 100% | 3.8 MiB/s | 235.3 KiB | 00m00s [100/186] libsepol-0:3.11-1.fc44.aarch6 100% | 2.6 MiB/s | 325.9 KiB | 00m00s [101/186] elfutils-libs-0:0.196-1.fc44. 100% | 4.2 MiB/s | 265.2 KiB | 00m00s [102/186] elfutils-0:0.196-1.fc44.aarch 100% | 10.1 MiB/s | 641.3 KiB | 00m00s [103/186] elfutils-debuginfod-client-0: 100% | 748.5 KiB/s | 45.7 KiB | 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rust-srpm-macros-0:28.5-1.fc4 100% | 183.5 KiB/s | 11.2 KiB | 00m00s [143/186] ca-certificates-0:2026.2.90_v 100% | 15.1 MiB/s | 973.3 KiB | 00m00s [144/186] libgcrypt-0:1.12.2-1.fc44.aar 100% | 8.4 MiB/s | 535.9 KiB | 00m00s [145/186] libidn2-0:2.3.8-3.fc44.aarch6 100% | 3.9 MiB/s | 174.6 KiB | 00m00s [146/186] gnutls-0:3.8.13-1.fc44.aarch6 100% | 20.3 MiB/s | 1.3 MiB | 00m00s [147/186] libtasn1-0:4.21.0-1.fc44.aarc 100% | 1.5 MiB/s | 73.4 KiB | 00m00s [148/186] libunistring-0:1.1-11.fc44.aa 100% | 5.9 MiB/s | 538.3 KiB | 00m00s [149/186] openldap-0:2.6.14-1.fc44.aarc 100% | 4.0 MiB/s | 251.8 KiB | 00m00s [150/186] nettle-0:3.10.1-3.fc44.aarch6 100% | 2.5 MiB/s | 425.5 KiB | 00m00s [151/186] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 6.0 MiB/s | 772.9 KiB | 00m00s [152/186] libtool-ltdl-0:2.5.4-10.fc44. 100% | 276.0 KiB/s | 35.6 KiB | 00m00s [153/186] gdbm-libs-1:1.23-11.fc44.aarc 100% | 713.1 KiB/s | 56.3 KiB | 00m00s [154/186] fedora-repos-0:44-2.noarch 100% | 148.9 KiB/s | 9.1 KiB | 00m00s [155/186] fedora-gpg-keys-0:44-2.noarch 100% | 3.0 MiB/s | 187.6 KiB | 00m00s [156/186] elfutils-default-yama-scope-0 100% | 186.1 KiB/s | 11.3 KiB | 00m00s [157/186] libpfm-0:4.13.0-20.fc44.aarch 100% | 868.8 KiB/s | 53.0 KiB | 00m00s [158/186] p11-kit-0:0.26.5-1.fc44.aarch 100% | 8.4 MiB/s | 534.2 KiB | 00m00s [159/186] p11-kit-trust-0:0.26.5-1.fc44 100% | 2.2 MiB/s | 139.4 KiB | 00m00s [160/186] libevent-0:2.1.13-1.fc44.aarc 100% | 4.4 MiB/s | 272.6 KiB | 00m00s [161/186] fedora-release-0:44-18.noarch 100% | 204.3 KiB/s | 12.5 KiB | 00m00s [162/186] systemd-standalone-sysusers-0 100% | 2.3 MiB/s | 141.2 KiB | 00m00s [163/186] xxhash-libs-0:0.8.3-4.fc44.aa 100% | 2.4 MiB/s | 34.5 KiB | 00m00s [164/186] fedora-release-identity-basic 100% | 216.8 KiB/s | 13.2 KiB | 00m00s [165/186] libcurl-0:8.18.0-10.fc44.aarc 100% | 6.7 MiB/s | 424.0 KiB | 00m00s [166/186] gdb-minimal-0:17.2-4.fc44.aar 100% | 33.9 MiB/s | 4.3 MiB | 00m00s [167/186] libnghttp3-0:1.18.0-1.fc44.aa 100% | 1.1 MiB/s | 70.1 KiB | 00m00s [168/186] libssh-0:0.12.2-1.fc44.aarch6 100% | 4.4 MiB/s | 277.1 KiB | 00m00s [169/186] ngtcp2-0:1.22.1-1.fc44.aarch6 100% | 2.4 MiB/s | 147.2 KiB | 00m00s [170/186] libbrotli-0:1.2.0-3.fc44.aarc 100% | 3.8 MiB/s | 348.7 KiB | 00m00s [171/186] libssh-config-0:0.12.2-1.fc44 100% | 146.5 KiB/s | 8.9 KiB | 00m00s [172/186] libpsl-0:0.21.5-7.fc44.aarch6 100% | 738.0 KiB/s | 64.9 KiB | 00m00s [173/186] libfido2-0:1.16.0-5.fc44.aarc 100% | 1.6 MiB/s | 96.2 KiB | 00m00s [174/186] publicsuffix-list-dafsa-0:202 100% | 1.0 MiB/s | 60.3 KiB | 00m00s [175/186] libcbor-0:0.13.0-2.fc44.aarch 100% | 459.0 KiB/s | 34.4 KiB | 00m00s [176/186] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 426.0 KiB/s | 26.0 KiB | 00m00s [177/186] selinux-policy-0:44.10-1.fc44 100% | 432.9 KiB/s | 26.4 KiB | 00m00s [178/186] rpm-plugin-selinux-0:6.0.2-1. 100% | 279.9 KiB/s | 17.1 KiB | 00m00s [179/186] policycoreutils-0:3.11-2.fc44 100% | 4.1 MiB/s | 260.6 KiB | 00m00s [180/186] libselinux-utils-0:3.11-2.fc4 100% | 2.0 MiB/s | 123.4 KiB | 00m00s [181/186] selinux-policy-targeted-0:44. 100% | 35.5 MiB/s | 6.8 MiB | 00m00s [182/186] krb5-libs-0:1.22.2-4.fc44.aar 100% | 11.6 MiB/s | 761.3 KiB | 00m00s [183/186] keyutils-libs-0:1.6.3-7.fc44. 100% | 1.0 MiB/s | 31.5 KiB | 00m00s [184/186] libcom_err-0:1.47.3-4.fc44.aa 100% | 898.6 KiB/s | 27.0 KiB | 00m00s [185/186] libnghttp2-0:1.68.0-5.fc44.aa 100% | 1.2 MiB/s | 74.0 KiB | 00m00s [186/186] libverto-0:0.3.2-12.fc44.aarc 100% | 301.7 KiB/s | 20.5 KiB | 00m00s -------------------------------------------------------------------------------- [186/186] Total 100% | 14.8 MiB/s | 66.7 MiB | 00m05s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. [ 1/188] Verify package files 100% | 765.0 B/s | 186.0 B | 00m00s [ 2/188] Prepare transaction 100% | 2.5 KiB/s | 186.0 B | 00m00s [ 3/188] Installing libgcc-0:16.2.1-2. 100% | 109.4 MiB/s | 224.0 KiB | 00m00s [ 4/188] Installing publicsuffix-list- 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [ 5/188] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/188] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0 B | 00m00s [ 7/188] Installing fedora-gpg-keys-0: 100% | 31.5 MiB/s | 355.3 KiB | 00m00s [ 8/188] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/188] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 10/188] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/188] Installing setup-0:2.15.0-28. 100% | 37.5 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/188] Installing filesystem-0:3.18- 100% | 2.0 MiB/s | 212.8 KiB | 00m00s [ 13/188] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [ 14/188] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 15/188] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 16/188] Installing pkgconf-m4-0:2.5.1 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [ 17/188] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 18/188] Installing coreutils-common-0 100% | 305.3 MiB/s | 10.7 MiB | 00m00s [ 19/188] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 20/188] Installing ncurses-base-0:6.6 100% | 49.6 MiB/s | 355.3 KiB | 00m00s [ 21/188] Installing bash-0:5.3.9-3.fc4 100% | 210.8 MiB/s | 8.4 MiB | 00m00s [ 22/188] Installing glibc-common-0:2.4 100% | 60.2 MiB/s | 1.3 MiB | 00m00s [ 23/188] Installing glibc-gconv-extra- 100% | 388.3 MiB/s | 18.6 MiB | 00m00s [ 24/188] Installing glibc-0:2.43-9.fc4 100% | 148.5 MiB/s | 6.4 MiB | 00m00s [ 25/188] Installing ncurses-libs-0:6.6 100% | 249.2 MiB/s | 1.2 MiB | 00m00s [ 26/188] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/188] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [ 28/188] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 29/188] Installing libgpg-error-0:1.5 100% | 48.6 MiB/s | 995.5 KiB | 00m00s [ 30/188] Installing libstdc++-0:16.2.1 100% | 330.1 MiB/s | 3.0 MiB | 00m00s [ 31/188] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 32/188] Installing libgcrypt-0:1.12.2 100% | 240.0 MiB/s | 1.2 MiB | 00m00s [ 33/188] Installing readline-0:8.3-4.f 100% | 276.2 MiB/s | 565.6 KiB | 00m00s [ 34/188] Installing gmp-1:6.3.0-5.fc44 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 35/188] Installing xz-libs-1:5.8.2-2. 100% | 260.2 MiB/s | 266.5 KiB | 00m00s [ 36/188] Installing libuuid-0:2.41.5-1 100% | 68.8 MiB/s | 70.4 KiB | 00m00s [ 37/188] Installing libzstd-0:1.5.7-5. 100% | 280.4 MiB/s | 861.5 KiB | 00m00s [ 38/188] Installing elfutils-libelf-0: 100% | 364.6 MiB/s | 1.5 MiB | 00m00s [ 39/188] Installing libacl-0:2.4.0-1.f 100% | 67.1 MiB/s | 68.8 KiB | 00m00s [ 40/188] Installing popt-0:1.19-10.fc4 100% | 49.2 MiB/s | 151.3 KiB | 00m00s [ 41/188] Installing systemd-libs-0:259 100% | 307.7 MiB/s | 2.5 MiB | 00m00s [ 42/188] Installing npth-0:1.8-4.fc44. 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 43/188] Installing libblkid-0:2.41.5- 100% | 142.3 MiB/s | 291.5 KiB | 00m00s [ 44/188] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB | 00m00s [ 45/188] Installing libsepol-0:3.11-1. 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 46/188] Installing sqlite-libs-0:3.51 100% | 261.2 MiB/s | 1.6 MiB | 00m00s [ 47/188] Installing gnupg2-gpgconf-0:2 100% | 18.6 MiB/s | 323.9 KiB | 00m00s [ 48/188] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.7 KiB | 00m00s [ 49/188] Installing libselinux-0:3.11- 100% | 130.1 MiB/s | 266.4 KiB | 00m00s [ 50/188] Installing grep-0:3.12-3.fc44 100% | 47.2 MiB/s | 1.0 MiB | 00m00s [ 51/188] Installing sed-0:4.9-7.fc44.a 100% | 41.0 MiB/s | 881.3 KiB | 00m00s [ 52/188] Installing findutils-1:4.10.0 100% | 80.0 MiB/s | 1.9 MiB | 00m00s [ 53/188] Installing json-c-0:0.18-8.fc 100% | 136.5 MiB/s | 139.7 KiB | 00m00s [ 54/188] Installing libtasn1-0:4.21.0- 100% | 108.7 MiB/s | 222.5 KiB | 00m00s [ 55/188] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 56/188] Installing libidn2-0:2.3.8-3. 100% | 50.3 MiB/s | 566.6 KiB | 00m00s [ 57/188] Installing crypto-policies-0: 100% | 19.2 MiB/s | 157.7 KiB | 00m00s [ 58/188] Installing xz-1:5.8.2-2.fc44. 100% | 57.9 MiB/s | 1.4 MiB | 00m00s [ 59/188] Installing libmount-0:2.41.5- 100% | 205.7 MiB/s | 421.3 KiB | 00m00s [ 60/188] Installing gnupg2-verify-0:2. 100% | 21.0 MiB/s | 365.7 KiB | 00m00s [ 61/188] Installing dwz-0:0.16-3.fc44. 100% | 18.6 MiB/s | 323.8 KiB | 00m00s [ 62/188] Installing mpfr-0:4.2.2-3.fc4 100% | 184.8 MiB/s | 757.1 KiB | 00m00s [ 63/188] Installing gawk-0:5.3.2-3.fc4 100% | 103.2 MiB/s | 2.6 MiB | 00m00s [ 64/188] Installing libksba-0:1.6.7-5. 100% | 195.7 MiB/s | 400.8 KiB | 00m00s [ 65/188] Installing unzip-0:6.0-69.fc4 100% | 29.2 MiB/s | 537.3 KiB | 00m00s [ 66/188] Installing file-libs-0:5.46-1 100% | 625.5 MiB/s | 11.9 MiB | 00m00s [ 67/188] Installing file-0:5.46-10.fc4 100% | 8.1 MiB/s | 141.6 KiB | 00m00s [ 68/188] Installing diffutils-0:3.12-5 100% | 70.6 MiB/s | 1.6 MiB | 00m00s [ 69/188] Installing libeconf-0:0.7.9-3 100% | 80.5 MiB/s | 82.5 KiB | 00m00s [ 70/188] Installing libsmartcols-0:2.4 100% | 220.2 MiB/s | 225.5 KiB | 00m00s [ 71/188] Installing lua-libs-0:5.4.8-5 100% | 161.7 MiB/s | 331.3 KiB | 00m00s [ 72/188] Installing libattr-0:2.6.0-1. 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 73/188] Installing libcap-ng-0:0.9.6- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 74/188] Installing audit-libs-0:4.2.1 100% | 238.9 MiB/s | 489.3 KiB | 00m00s [ 75/188] Installing pam-libs-0:1.7.2-2 100% | 109.9 MiB/s | 225.0 KiB | 00m00s [ 76/188] Installing libcap-0:2.78-1.fc 100% | 27.9 MiB/s | 513.5 KiB | 00m00s [ 77/188] Installing libsemanage-0:3.11 100% | 176.7 MiB/s | 361.8 KiB | 00m00s [ 78/188] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 91.6 KiB | 00m00s [ 79/188] Installing libffi-0:3.5.2-2.f 100% | 153.4 MiB/s | 157.1 KiB | 00m00s [ 80/188] Installing p11-kit-0:0.26.5-1 100% | 100.0 MiB/s | 2.8 MiB | 00m00s [ 81/188] Installing p11-kit-trust-0:0. 100% | 21.6 MiB/s | 531.9 KiB | 00m00s [ 82/188] Installing ngtcp2-0:1.22.1-1. 100% | 167.3 MiB/s | 342.7 KiB | 00m00s [ 83/188] Installing openssl-libs-1:3.5 100% | 309.2 MiB/s | 7.4 MiB | 00m00s [ 84/188] Installing coreutils-0:9.10-5 100% | 182.7 MiB/s | 8.2 MiB | 00m00s [ 85/188] Installing ca-certificates-0: 100% | 1.5 MiB/s | 2.5 MiB | 00m02s [ 86/188] Installing gzip-0:1.14-2.fc44 100% | 21.6 MiB/s | 443.0 KiB | 00m00s [ 87/188] Installing libfsverity-0:1.6- 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 88/188] Installing rpm-sequoia-0:1.10 100% | 286.5 MiB/s | 2.3 MiB | 00m00s [ 89/188] Installing libevent-0:2.1.13- 100% | 271.7 MiB/s | 1.1 MiB | 00m00s [ 90/188] Installing ngtcp2-crypto-ossl 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 91/188] Installing liblastlog2-0:2.41 100% | 22.8 MiB/s | 139.8 KiB | 00m00s [ 92/188] Installing util-linux-core-0: 100% | 91.3 MiB/s | 2.5 MiB | 00m00s [ 93/188] Installing zip-0:3.0-45.fc44. 100% | 39.4 MiB/s | 765.8 KiB | 00m00s [ 94/188] Installing gnupg2-keyboxd-0:2 100% | 38.2 MiB/s | 234.5 KiB | 00m00s [ 95/188] Installing libpsl-0:0.21.5-7. 100% | 130.3 MiB/s | 133.4 KiB | 00m00s [ 96/188] Installing tar-2:1.35-9.fc44. 100% | 111.3 MiB/s | 3.0 MiB | 00m00s [ 97/188] Installing linkdupes-0:0.7.3- 100% | 36.8 MiB/s | 715.1 KiB | 00m00s [ 98/188] Installing libselinux-utils-0 100% | 64.6 MiB/s | 1.4 MiB | 00m00s [ 99/188] Installing systemd-standalone 100% | 19.0 MiB/s | 330.2 KiB | 00m00s [100/188] Installing rpm-libs-0:6.0.2-1 100% | 243.3 MiB/s | 996.7 KiB | 00m00s [101/188] Installing libfdisk-0:2.41.5- 100% | 136.7 MiB/s | 419.9 KiB | 00m00s [102/188] Installing util-linux-0:2.41. 100% | 139.9 MiB/s | 6.9 MiB | 00m00s [103/188] Installing policycoreutils-0: 100% | 45.0 MiB/s | 1.5 MiB | 00m00s [104/188] Installing selinux-policy-0:4 100% | 1.4 MiB/s | 34.5 KiB | 00m00s [105/188] Installing selinux-policy-tar 100% | 130.8 MiB/s | 14.9 MiB | 00m00s [106/188] Installing libusb1-0:1.0.30-1 100% | 19.7 MiB/s | 181.4 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/188] Installing tpm2-tss-0:4.1.3-9 100% | 269.6 MiB/s | 2.2 MiB | 00m00s [108/188] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [109/188] Installing gnupg2-gpg-agent-0 100% | 32.0 MiB/s | 850.9 KiB | 00m00s [110/188] Installing zstd-0:1.5.7-5.fc4 100% | 29.1 MiB/s | 565.8 KiB | 00m00s [111/188] Installing libxml2-0:2.12.10- 100% | 82.2 MiB/s | 1.9 MiB | 00m00s [112/188] Installing nettle-0:3.10.1-3. 100% | 250.1 MiB/s | 768.2 KiB | 00m00s [113/188] Installing gnutls-0:3.8.13-1. 100% | 309.1 MiB/s | 3.7 MiB | 00m00s [114/188] Installing bzip2-0:1.0.8-23.f 100% | 10.1 MiB/s | 175.6 KiB | 00m00s [115/188] Installing add-determinism-0: 100% | 89.6 MiB/s | 2.0 MiB | 00m00s [116/188] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [117/188] Installing cpio-0:2.15-9.fc44 100% | 52.2 MiB/s | 1.1 MiB | 00m00s [118/188] Installing ed-0:1.22.5-2.fc44 100% | 9.2 MiB/s | 160.1 KiB | 00m00s [119/188] Installing patch-0:2.8-4.fc44 100% | 15.2 MiB/s | 263.9 KiB | 00m00s [120/188] Installing libpkgconf-0:2.5.1 100% | 132.0 MiB/s | 135.2 KiB | 00m00s [121/188] Installing pkgconf-0:2.5.1-1. 100% | 6.9 MiB/s | 119.3 KiB | 00m00s [122/188] Installing pkgconf-pkg-config 100% | 110.8 KiB/s | 1.8 KiB | 00m00s [123/188] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB | 00m00s [124/188] Installing jansson-0:2.14-4.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [125/188] Installing lz4-libs-0:1.10.0- 100% | 193.7 MiB/s | 198.4 KiB | 00m00s [126/188] Installing libarchive-0:3.8.7 100% | 238.7 MiB/s | 977.5 KiB | 00m00s [127/188] Installing libtool-ltdl-0:2.5 100% | 92.8 MiB/s | 95.0 KiB | 00m00s [128/188] Installing gdbm-libs-1:1.23-1 100% | 229.9 MiB/s | 235.4 KiB | 00m00s [129/188] Installing cyrus-sasl-lib-0:2 100% | 100.7 MiB/s | 2.4 MiB | 00m00s [130/188] Installing openldap-0:2.6.14- 100% | 187.7 MiB/s | 768.8 KiB | 00m00s [131/188] Installing gnupg2-dirmngr-0:2 100% | 25.3 MiB/s | 648.9 KiB | 00m00s [132/188] Installing gnupg2-0:2.4.9-16. 100% | 174.5 MiB/s | 6.5 MiB | 00m00s [133/188] Installing rpm-sign-libs-0:6. 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [134/188] Installing gpgverify-0:2.2-4. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [135/188] Installing libpfm-0:4.13.0-20 100% | 247.4 MiB/s | 253.3 KiB | 00m00s [136/188] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [137/188] Installing libnghttp3-0:1.18. 100% | 203.3 MiB/s | 208.2 KiB | 00m00s [138/188] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.3 KiB | 00m00s [139/188] Installing libcbor-0:0.13.0-2 100% | 137.6 MiB/s | 140.9 KiB | 00m00s [140/188] Installing libfido2-0:1.16.0- 100% | 136.8 MiB/s | 280.1 KiB | 00m00s [141/188] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.6 KiB | 00m00s [142/188] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.1 KiB | 00m00s [143/188] Installing libverto-0:0.3.2-1 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [144/188] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s | 2.5 MiB | 00m00s [145/188] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB | 00m00s [146/188] Installing libnghttp2-0:1.68. 100% | 194.4 MiB/s | 199.1 KiB | 00m00s [147/188] Installing libcurl-0:8.18.0-1 100% | 239.7 MiB/s | 981.9 KiB | 00m00s [148/188] Installing curl-0:8.18.0-10.f 100% | 16.9 MiB/s | 466.9 KiB | 00m00s [149/188] Installing rpm-0:6.0.2-1.fc44 100% | 65.0 MiB/s | 2.8 MiB | 00m00s [150/188] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [151/188] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [152/188] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/188] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [154/188] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [155/188] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [156/188] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [157/188] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [158/188] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.5 KiB | 00m00s [159/188] Installing elfutils-debuginfo 100% | 7.5 MiB/s | 146.1 KiB | 00m00s [160/188] Installing elfutils-0:0.196-1 100% | 135.0 MiB/s | 3.8 MiB | 00m00s [161/188] Installing binutils-0:2.46.1- 100% | 297.1 MiB/s | 31.5 MiB | 00m00s [162/188] Installing gdb-minimal-0:17.2 100% | 241.7 MiB/s | 13.5 MiB | 00m00s [163/188] Installing debugedit-0:5.3-2. 100% | 17.6 MiB/s | 324.2 KiB | 00m00s [164/188] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 264.9 KiB | 00m00s [165/188] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [166/188] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [167/188] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [168/188] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [169/188] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [170/188] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [171/188] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [172/188] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [173/188] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [174/188] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [175/188] Installing gnome-srpm-macros- 100% | 4.0 MiB/s | 4.1 KiB | 00m00s [176/188] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.9 KiB | 00m00s [177/188] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [178/188] Installing rpm-build-0:6.0.2- 100% | 29.7 MiB/s | 607.8 KiB | 00m00s [179/188] Installing erlang-srpm-macros 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [180/188] Installing pyproject-srpm-mac 100% | 665.4 KiB/s | 4.0 KiB | 00m00s [181/188] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [182/188] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [183/188] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [184/188] Installing R-srpm-macros-0:1. 100% | 4.3 MiB/s | 4.4 KiB | 00m00s [185/188] Installing rpm-plugin-selinux 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [186/188] Installing which-0:2.25-1.fc4 100% | 6.5 MiB/s | 125.8 KiB | 00m00s [187/188] Installing shadow-utils-2:4.1 100% | 107.0 MiB/s | 4.5 MiB | 00m00s [188/188] Installing info-0:7.2-9.fc44. 100% | 49.6 KiB/s | 421.9 KiB | 00m09s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc44.noarch add-determinism-0.7.3-2.fc44.aarch64 alternatives-1.33-5.fc44.aarch64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.2.1-1.fc44.aarch64 bash-5.3.9-3.fc44.aarch64 binutils-2.46.1-1.fc44.aarch64 build-reproducibility-srpm-macros-0.7.3-2.fc44.noarch bzip2-1.0.8-23.fc44.aarch64 bzip2-libs-1.0.8-23.fc44.aarch64 ca-certificates-2026.2.90_v9.0.317-1.fc44.noarch cmake-srpm-macros-4.3.0-1.fc44.noarch coreutils-9.10-5.fc44.aarch64 coreutils-common-9.10-5.fc44.aarch64 cpio-2.15-9.fc44.aarch64 crypto-policies-20251128-3.git19878fe.fc44.noarch curl-8.18.0-10.fc44.aarch64 cyrus-sasl-lib-2.1.28-35.fc44.aarch64 debugedit-5.3-2.fc44.aarch64 diffutils-3.12-5.fc44.aarch64 dwz-0.16-3.fc44.aarch64 ed-1.22.5-2.fc44.aarch64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.196-1.fc44.aarch64 elfutils-debuginfod-client-0.196-1.fc44.aarch64 elfutils-default-yama-scope-0.196-1.fc44.noarch elfutils-libelf-0.196-1.fc44.aarch64 elfutils-libs-0.196-1.fc44.aarch64 erlang-srpm-macros-0.3.11-1.fc44.noarch fedora-gpg-keys-44-2.noarch fedora-release-44-18.noarch fedora-release-common-44-18.noarch fedora-release-identity-basic-44-18.noarch fedora-repos-44-2.noarch file-5.46-10.fc44.aarch64 file-libs-5.46-10.fc44.aarch64 filesystem-3.18-52.fc44.aarch64 filesystem-srpm-macros-3.18-52.fc44.noarch findutils-4.10.0-7.fc44.aarch64 fonts-srpm-macros-5.0.0-2.fc44.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.3.2-3.fc44.aarch64 gdb-minimal-17.2-4.fc44.aarch64 gdbm-libs-1.23-11.fc44.aarch64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43-9.fc44.aarch64 glibc-common-2.43-9.fc44.aarch64 glibc-gconv-extra-2.43-9.fc44.aarch64 glibc-minimal-langpack-2.43-9.fc44.aarch64 gmp-6.3.0-5.fc44.aarch64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc44.noarch gnulib-l10n-20241231-2.fc44.noarch gnupg2-2.4.9-16.fc44.aarch64 gnupg2-dirmngr-2.4.9-16.fc44.aarch64 gnupg2-gpg-agent-2.4.9-16.fc44.aarch64 gnupg2-gpgconf-2.4.9-16.fc44.aarch64 gnupg2-keyboxd-2.4.9-16.fc44.aarch64 gnupg2-verify-2.4.9-16.fc44.aarch64 gnutls-3.8.13-1.fc44.aarch64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.aarch64 gzip-1.14-2.fc44.aarch64 ima-evm-utils-libs-1.6.2-8.fc44.aarch64 info-7.2-9.fc44.aarch64 jansson-2.14-4.fc44.aarch64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.aarch64 kernel-srpm-macros-1.0-28.fc44.noarch keyutils-libs-1.6.3-7.fc44.aarch64 krb5-libs-1.22.2-4.fc44.aarch64 libacl-2.4.0-1.fc44.aarch64 libarchive-3.8.7-1.fc44.aarch64 libassuan-2.5.7-5.fc44.aarch64 libattr-2.6.0-1.fc44.aarch64 libblkid-2.41.5-1.fc44.aarch64 libbrotli-1.2.0-3.fc44.aarch64 libcap-2.78-1.fc44.aarch64 libcap-ng-0.9.6-1.fc44.aarch64 libcbor-0.13.0-2.fc44.aarch64 libcom_err-1.47.3-4.fc44.aarch64 libcurl-8.18.0-10.fc44.aarch64 libeconf-0.7.9-3.fc44.aarch64 libevent-2.1.13-1.fc44.aarch64 libfdisk-2.41.5-1.fc44.aarch64 libffi-3.5.2-2.fc44.aarch64 libfido2-1.16.0-5.fc44.aarch64 libfsverity-1.6-4.fc44.aarch64 libgcc-16.2.1-2.fc44.aarch64 libgcrypt-1.12.2-1.fc44.aarch64 libgomp-16.2.1-2.fc44.aarch64 libgpg-error-1.58-2.fc44.aarch64 libidn2-2.3.8-3.fc44.aarch64 libksba-1.6.7-5.fc44.aarch64 liblastlog2-2.41.5-1.fc44.aarch64 libmount-2.41.5-1.fc44.aarch64 libnghttp2-1.68.0-5.fc44.aarch64 libnghttp3-1.18.0-1.fc44.aarch64 libpfm-4.13.0-20.fc44.aarch64 libpkgconf-2.5.1-1.fc44.aarch64 libpsl-0.21.5-7.fc44.aarch64 libselinux-3.11-2.fc44.aarch64 libselinux-utils-3.11-2.fc44.aarch64 libsemanage-3.11-1.fc44.aarch64 libsepol-3.11-1.fc44.aarch64 libsmartcols-2.41.5-1.fc44.aarch64 libssh-0.12.2-1.fc44.aarch64 libssh-config-0.12.2-1.fc44.noarch libstdc++-16.2.1-2.fc44.aarch64 libtasn1-4.21.0-1.fc44.aarch64 libtool-ltdl-2.5.4-10.fc44.aarch64 libunistring-1.1-11.fc44.aarch64 libusb1-1.0.30-1.fc44.aarch64 libuuid-2.41.5-1.fc44.aarch64 libverto-0.3.2-12.fc44.aarch64 libxcrypt-4.5.2-3.fc44.aarch64 libxml2-2.12.10-6.fc44.aarch64 libzstd-1.5.7-5.fc44.aarch64 linkdupes-0.7.3-2.fc44.aarch64 lua-libs-5.4.8-5.fc44.aarch64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.aarch64 mpfr-4.2.2-3.fc44.aarch64 ncurses-base-6.6-1.fc44.noarch ncurses-libs-6.6-1.fc44.aarch64 nettle-3.10.1-3.fc44.aarch64 ngtcp2-1.22.1-1.fc44.aarch64 ngtcp2-crypto-ossl-1.22.1-1.fc44.aarch64 npth-1.8-4.fc44.aarch64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.14-1.fc44.aarch64 openssl-libs-3.5.8-1.fc44.aarch64 p11-kit-0.26.5-1.fc44.aarch64 p11-kit-trust-0.26.5-1.fc44.aarch64 package-notes-srpm-macros-0.20-1.fc44.noarch pam-libs-1.7.2-2.fc44.aarch64 patch-2.8-4.fc44.aarch64 pcre2-10.47-1.fc44.1.aarch64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc44.aarch64 pkgconf-m4-2.5.1-1.fc44.noarch pkgconf-pkg-config-2.5.1-1.fc44.aarch64 policycoreutils-3.11-2.fc44.aarch64 popt-1.19-10.fc44.aarch64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.23.2-1.fc44.noarch python-srpm-macros-3.14-12.fc44.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.2-1.fc44.noarch readline-8.3-4.fc44.aarch64 redhat-rpm-config-344-2.fc44.noarch rpm-6.0.2-1.fc44.aarch64 rpm-build-6.0.2-1.fc44.aarch64 rpm-build-libs-6.0.2-1.fc44.aarch64 rpm-libs-6.0.2-1.fc44.aarch64 rpm-plugin-selinux-6.0.2-1.fc44.aarch64 rpm-sequoia-1.10.3-1.fc44.aarch64 rpm-sign-libs-6.0.2-1.fc44.aarch64 rust-srpm-macros-28.5-1.fc44.noarch sed-4.9-7.fc44.aarch64 selinux-policy-44.10-1.fc44.noarch selinux-policy-targeted-44.10-1.fc44.noarch setup-2.15.0-28.fc44.noarch shadow-utils-4.19.0-7.fc44.aarch64 sqlite-libs-3.51.2-2.fc44.aarch64 systemd-libs-259.9-1.fc44.aarch64 systemd-standalone-sysusers-259.9-1.fc44.aarch64 tar-1.35-9.fc44.aarch64 tpm2-tss-4.1.3-9.fc44.aarch64 tree-sitter-srpm-macros-0.4.2-2.fc44.noarch unzip-6.0-69.fc44.aarch64 util-linux-2.41.5-1.fc44.aarch64 util-linux-core-2.41.5-1.fc44.aarch64 which-2.25-1.fc44.aarch64 xxhash-libs-0.8.3-4.fc44.aarch64 xz-5.8.2-2.fc44.aarch64 xz-libs-5.8.2-2.fc44.aarch64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.aarch64 zlib-ng-compat-2.3.3-3.fc44.aarch64 zstd-1.5.7-5.fc44.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790812800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-7.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-aarch64-1790964586.274326/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-z1mqbpq7/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-7.fc44.src.rpm) Config(fedora-44-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-bootstrap-1790964586.274326/root. INFO: reusing tmpfs at /var/lib/mock/fedora-44-aarch64-bootstrap-1790964586.274326/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-aarch64-1790964586.274326/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.aarch64 rpm-sequoia-1.10.3-1.fc44.aarch64 dnf5-5.4.6.0-1.fc44.aarch64 dnf5-plugins-5.4.6.0-1.fc44.aarch64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-7.fc44.src.rpm Start: build setup for mrtrix3-3.0.8-7.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790812800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-7.fc44.src.rpm Updating and loading repositories: updates 100% | 98.2 KiB/s | 10.3 KiB | 00m00s fedora 100% | 99.9 KiB/s | 10.5 KiB | 00m00s Copr repository 100% | 95.7 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils aarch64 0:0.28-5.fc44 fedora 318.0 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB fftw-devel aarch64 0:3.3.10-17.fc44 fedora 282.2 KiB gcc-c++ aarch64 0:16.2.1-2.fc44 updates 44.8 MiB git aarch64 0:2.55.0-1.fc44 updates 57.7 KiB libappstream-glib aarch64 0:0.8.4-1.fc44 updates 1.5 MiB libpng-devel aarch64 2:1.6.58-1.fc44 updates 978.0 KiB libtiff-devel aarch64 0:4.7.2-1.fc44 updates 884.7 KiB mesa-libGL-devel aarch64 0:26.2.3-1.fc44 updates 80.8 KiB mesa-libGLU-devel aarch64 0:9.0.3-8.fc44 fedora 17.0 KiB python3 aarch64 0:3.14.7-1.fc44 updates 84.8 KiB python3-devel aarch64 0:3.14.7-1.fc44 updates 2.0 MiB qt5-qtbase-devel aarch64 0:5.15.18-2.fc44 fedora 19.1 MiB qt5-qtsvg-devel aarch64 0:5.15.18-2.fc44 fedora 83.5 KiB zlib-ng-compat-devel aarch64 0:2.3.3-3.fc44 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB annobin-docs noarch 0:13.14-1.fc44 updates 99.3 KiB annobin-plugin-gcc aarch64 0:13.14-1.fc44 updates 711.3 KiB avahi-libs aarch64 0:0.9~rc2-8.fc44 fedora 229.9 KiB bubblewrap aarch64 0:0.12.0-1.fc44 updates 183.8 KiB cairo aarch64 0:1.18.4-6.fc44 fedora 1.8 MiB cairo-gobject aarch64 0:1.18.4-6.fc44 fedora 67.0 KiB cmake aarch64 0:4.3.0-1.fc44 fedora 32.9 MiB cmake-data noarch 0:4.3.0-1.fc44 fedora 9.4 MiB cmake-filesystem aarch64 0:4.3.0-1.fc44 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-1.fc44 fedora 8.4 KiB cpp aarch64 0:16.2.1-2.fc44 updates 40.8 MiB cups-filesystem noarch 1:2.4.19-3.fc44 updates 0.0 B cups-libs aarch64 1:2.4.19-3.fc44 updates 730.8 KiB dbus-libs aarch64 1:1.16.2-1.fc44 fedora 397.5 KiB default-fonts-core-sans noarch 0:4.3-1.fc44 fedora 11.9 KiB double-conversion aarch64 0:3.4.0-3.fc44 fedora 141.1 KiB duktape aarch64 0:2.7.0-11.fc44 fedora 671.6 KiB emacs-filesystem aarch64 1:30.2-2.fc44 fedora 0.0 B expat aarch64 0:2.8.3-1.fc44 updates 378.4 KiB fftw aarch64 0:3.3.10-17.fc44 fedora 220.9 KiB fftw-libs aarch64 0:3.3.10-17.fc44 fedora 0.0 B fftw-libs-double aarch64 0:3.3.10-17.fc44 fedora 1.8 MiB fftw-libs-long aarch64 0:3.3.10-17.fc44 fedora 2.3 MiB fftw-libs-single aarch64 0:3.3.10-17.fc44 fedora 1.9 MiB fontconfig aarch64 0:2.17.0-4.fc44 fedora 1.2 MiB fonts-filesystem noarch 1:5.0.0-2.fc44 fedora 0.0 B freetype aarch64 0:2.14.3-1.fc44 updates 878.6 KiB fribidi aarch64 0:1.0.16-4.fc44 fedora 246.0 KiB gcc aarch64 0:16.2.1-2.fc44 updates 112.5 MiB gcc-plugin-annobin aarch64 0:16.2.1-2.fc44 updates 69.2 KiB gdk-pixbuf2 aarch64 0:2.44.6^really2.44.4-3.fc44 updates 2.6 MiB git-core aarch64 0:2.55.0-1.fc44 updates 24.8 MiB git-core-doc noarch 0:2.55.0-1.fc44 updates 18.9 MiB glib2 aarch64 0:2.88.3-1.fc44 updates 15.8 MiB glibc-devel aarch64 0:2.43-9.fc44 updates 2.3 MiB glx-utils aarch64 0:9.0.0-11.fc44 fedora 590.1 KiB glycin-libs aarch64 0:2.1.5-1.fc44 updates 4.1 MiB glycin-loaders aarch64 0:2.1.5-1.fc44 updates 12.9 MiB google-noto-fonts-common noarch 0:20251201-2.fc44 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20251201-2.fc44 fedora 1.4 MiB graphite2 aarch64 0:1.3.14-20.fc44 fedora 239.3 KiB groff-base aarch64 0:1.23.0-12.fc44 fedora 4.2 MiB harfbuzz aarch64 0:14.1.0-2.fc44 updates 2.7 MiB highway aarch64 0:1.3.0-2.fc44 fedora 1.5 MiB hwdata noarch 0:0.411-1.fc44 updates 10.1 MiB jbigkit-libs aarch64 0:2.1-33.fc44 fedora 181.2 KiB json-glib aarch64 0:1.10.8-5.fc44 fedora 616.2 KiB jsoncpp aarch64 0:1.9.6-3.fc44 fedora 271.7 KiB kernel-headers aarch64 0:7.2.4-200.fc44 updates 6.9 MiB lcms2 aarch64 0:2.16-7.fc44 fedora 484.7 KiB less aarch64 0:704-4.fc44 updates 607.5 KiB libICE aarch64 0:1.1.2-4.fc44 fedora 222.2 KiB libSM aarch64 0:1.2.5-4.fc44 fedora 128.9 KiB libX11 aarch64 0:1.8.13-1.fc44 fedora 1.3 MiB libX11-common noarch 0:1.8.13-1.fc44 fedora 1.1 MiB libX11-devel aarch64 0:1.8.13-1.fc44 fedora 1.0 MiB libX11-xcb aarch64 0:1.8.13-1.fc44 fedora 66.9 KiB libXau aarch64 0:1.0.12-4.fc44 fedora 120.8 KiB libXau-devel aarch64 0:1.0.12-4.fc44 fedora 7.3 KiB libXext aarch64 0:1.3.6-5.fc44 fedora 145.7 KiB libXft aarch64 0:2.3.8-10.fc44 fedora 192.2 KiB libXrender aarch64 0:0.9.12-4.fc44 fedora 69.9 KiB libXxf86vm aarch64 0:1.1.6-4.fc44 fedora 69.1 KiB libaom aarch64 0:3.13.3-1.fc44 updates 3.8 MiB libasan aarch64 0:16.2.1-2.fc44 updates 1.5 MiB libatomic aarch64 0:16.2.1-2.fc44 updates 77.7 KiB libdatrie aarch64 0:0.2.14-2.fc44 fedora 93.7 KiB libdav1d aarch64 0:1.5.4-1.fc44 updates 920.8 KiB libdrm aarch64 0:2.4.134-1.fc44 updates 765.3 KiB libdrm-devel aarch64 0:2.4.134-1.fc44 updates 791.1 KiB libedit aarch64 0:3.1-59.20260512cvs.fc44 updates 280.3 KiB libevdev aarch64 0:1.13.7-1.fc44 updates 134.0 KiB libglvnd aarch64 1:1.7.0-9.fc44 fedora 1.3 MiB libglvnd-core-devel aarch64 1:1.7.0-9.fc44 fedora 40.3 KiB libglvnd-devel aarch64 1:1.7.0-9.fc44 fedora 2.1 MiB libglvnd-egl aarch64 1:1.7.0-9.fc44 fedora 68.7 KiB libglvnd-gles aarch64 1:1.7.0-9.fc44 fedora 394.0 KiB libglvnd-glx aarch64 1:1.7.0-9.fc44 fedora 1.0 MiB libglvnd-opengl aarch64 1:1.7.0-9.fc44 fedora 329.0 KiB libgudev aarch64 0:238-9.fc44 fedora 103.6 KiB libheif aarch64 0:1.23.5-3.fc44 updates 2.6 MiB libicu aarch64 0:77.1-3.fc44 updates 36.5 MiB libinput aarch64 0:1.31.3-1.fc44 updates 952.5 KiB libjpeg-turbo aarch64 0:3.1.3-1.fc44 fedora 677.7 KiB libjpeg-turbo-devel aarch64 0:3.1.3-1.fc44 fedora 353.9 KiB libjxl aarch64 1:0.11.2-1.fc44 updates 2.6 MiB liblerc aarch64 0:4.0.0-10.fc44 fedora 546.3 KiB liblerc-devel aarch64 0:4.0.0-10.fc44 fedora 4.3 MiB libmpc aarch64 0:1.4.1-1.fc44 updates 216.8 KiB libopenjph aarch64 0:0.25.3-3.fc44 fedora 325.6 KiB libpciaccess aarch64 0:0.16-17.fc44 fedora 72.4 KiB libpciaccess-devel aarch64 0:0.16-17.fc44 fedora 15.3 KiB libpng aarch64 2:1.6.58-1.fc44 updates 269.7 KiB libproxy aarch64 0:0.5.12-2.fc44 fedora 166.0 KiB librsvg2 aarch64 0:2.62.3-1.fc44 updates 4.7 MiB libseccomp aarch64 0:2.6.1-2.fc44 updates 246.3 KiB libstdc++-devel aarch64 0:16.2.1-2.fc44 updates 40.4 MiB libthai aarch64 0:0.1.30-2.fc44 fedora 824.9 KiB libtiff aarch64 0:4.7.2-1.fc44 updates 659.4 KiB libubsan aarch64 0:16.2.1-2.fc44 updates 475.9 KiB libuv aarch64 1:1.52.1-2.fc44 updates 616.4 KiB libwacom aarch64 0:2.19.0-1.fc44 updates 150.1 KiB libwacom-data noarch 0:2.19.0-1.fc44 updates 1.4 MiB libwayland-client aarch64 0:1.26.0-1.fc44 updates 70.1 KiB libwebp aarch64 0:1.6.0-3.fc44 fedora 816.8 KiB libwebp-devel aarch64 0:1.6.0-3.fc44 fedora 121.7 KiB libxcb aarch64 0:1.17.0-7.fc44 fedora 2.1 MiB libxcb-devel aarch64 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel aarch64 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon aarch64 0:1.13.1-2.fc44 fedora 471.5 KiB libxkbcommon-x11 aarch64 0:1.13.1-2.fc44 fedora 67.4 KiB libxshmfence aarch64 0:1.3.2-8.fc44 fedora 68.4 KiB libzstd-devel aarch64 0:1.5.7-5.fc44 fedora 217.6 KiB llvm-filesystem aarch64 0:22.1.8-4.fc44 updates 0.0 B llvm-libs aarch64 0:22.1.8-4.fc44 updates 135.1 MiB lm_sensors-libs aarch64 0:3.6.0-24.fc44 fedora 93.7 KiB lzo aarch64 0:2.10-16.fc44 fedora 162.8 KiB make aarch64 1:4.4.1-12.fc44 fedora 1.8 MiB mesa-dri-drivers aarch64 0:26.2.3-1.fc44 updates 39.4 MiB mesa-filesystem aarch64 0:26.2.3-1.fc44 updates 3.6 KiB mesa-libEGL aarch64 0:26.2.3-1.fc44 updates 394.4 KiB mesa-libGL aarch64 0:26.2.3-1.fc44 updates 398.0 KiB mesa-libGLU aarch64 0:9.0.3-8.fc44 fedora 329.5 KiB mesa-libgbm aarch64 0:26.2.3-1.fc44 updates 67.7 KiB mpdecimal aarch64 0:4.0.1-3.fc44 fedora 281.1 KiB mtdev aarch64 0:1.1.6-12.fc44 fedora 69.1 KiB ncurses aarch64 0:6.6-1.fc44 fedora 895.4 KiB ninja-build aarch64 0:1.13.2-2.fc44 fedora 467.8 KiB noopenh264 aarch64 0:2.6.0-4.fc44 fedora 95.1 KiB openjpeg aarch64 0:2.5.4-3.fc44 fedora 412.2 KiB openssh aarch64 0:10.2p1-14.fc44 updates 1.4 MiB openssh-clients aarch64 0:10.2p1-14.fc44 updates 2.7 MiB pango aarch64 0:1.57.1-1.fc44 fedora 1.2 MiB pcre2-utf16 aarch64 0:10.47-1.fc44.1 fedora 582.9 KiB perl-AutoLoader noarch 0:5.74-525.fc44 updates 20.6 KiB perl-B aarch64 0:1.89-525.fc44 updates 545.3 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-525.fc44 updates 25.4 KiB perl-Data-Dumper aarch64 0:2.192-523.fc44 updates 135.6 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 aarch64 0:2.59-521.fc44 fedora 103.6 KiB perl-DynaLoader aarch64 0:1.57-525.fc44 updates 32.1 KiB perl-Encode aarch64 4:3.21-521.fc44 fedora 4.8 MiB perl-English noarch 0:1.11-525.fc44 updates 6.2 KiB perl-Errno aarch64 0:1.38-525.fc44 updates 8.4 KiB perl-Error noarch 1:0.17030-3.fc44 fedora 76.8 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-Fcntl aarch64 0:1.20-525.fc44 updates 92.7 KiB perl-File-Basename noarch 0:2.86-525.fc44 updates 14.0 KiB perl-File-Find noarch 0:1.44-525.fc44 updates 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-525.fc44 updates 12.5 KiB perl-FileHandle noarch 0:2.05-525.fc44 updates 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-525.fc44 updates 11.2 KiB perl-Git noarch 0:2.55.0-1.fc44 updates 64.4 KiB perl-HTTP-Tiny noarch 0:0.096-1.fc44 updates 162.4 KiB perl-IO aarch64 0:1.55-525.fc44 updates 191.3 KiB perl-IO-Socket-IP noarch 0:0.43-522.fc44 fedora 100.3 KiB perl-IO-Socket-SSL noarch 0:2.098-2.fc44 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-525.fc44 updates 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 aarch64 0:3.16-521.fc44 fedora 93.9 KiB perl-Net-SSLeay aarch64 0:1.94-12.fc44 fedora 1.4 MiB perl-POSIX aarch64 0:2.23-525.fc44 updates 261.5 KiB perl-PathTools aarch64 0:3.94-521.fc44 fedora 223.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-4.fc44 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-2.fc44 fedora 152.8 KiB perl-SelectSaver noarch 0:1.02-525.fc44 updates 2.2 KiB perl-Socket aarch64 4:2.043-1.fc44 updates 145.8 KiB perl-Storable aarch64 1:3.37-522.fc44 fedora 243.1 KiB perl-Symbol noarch 0:1.09-525.fc44 updates 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-TermReadKey aarch64 0:2.38-27.fc44 fedora 107.9 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes aarch64 4:1.9778-521.fc44 fedora 151.6 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.36-1.fc44 updates 275.7 KiB perl-Unicode-Normalize aarch64 0:1.32-521.fc44 fedora 524.4 KiB perl-base noarch 0:2.27-525.fc44 updates 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-if noarch 0:0.61.000-525.fc44 updates 5.8 KiB perl-interpreter aarch64 4:5.42.3-525.fc44 updates 174.9 KiB perl-lib aarch64 0:0.65-525.fc44 updates 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs aarch64 4:5.42.3-525.fc44 updates 11.6 MiB perl-locale noarch 0:1.13-525.fc44 updates 6.1 KiB perl-mro aarch64 0:1.29-525.fc44 updates 81.5 KiB perl-overload noarch 0:1.40-525.fc44 updates 71.6 KiB perl-overloading noarch 0:0.02-525.fc44 updates 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-525.fc44 updates 3.9 KiB pixman aarch64 0:0.46.2-3.fc44 fedora 654.3 KiB pyproject-rpm-macros noarch 0:1.23.2-1.fc44 updates 156.3 KiB python-pip-wheel noarch 0:26.0.1-3.fc44 updates 1.2 MiB python-rpm-macros noarch 0:3.14-12.fc44 fedora 28.0 KiB python3-libs aarch64 0:3.14.7-1.fc44 updates 45.6 MiB python3-packaging noarch 0:25.0-8.fc44 fedora 607.4 KiB python3-rpm-generators noarch 0:14-14.fc44 fedora 81.7 KiB python3-rpm-macros noarch 0:3.14-12.fc44 fedora 6.5 KiB qt-settings noarch 0:44.0-1.fc44 updates 1.1 KiB qt5-filesystem aarch64 0:5.15.18-2.fc44 fedora 0.0 B qt5-qtbase aarch64 0:5.15.18-2.fc44 fedora 10.3 MiB qt5-qtbase-common noarch 0:5.15.18-2.fc44 fedora 78.0 B qt5-qtbase-gui aarch64 0:5.15.18-2.fc44 fedora 21.1 MiB qt5-qtsvg aarch64 0:5.15.18-2.fc44 fedora 718.9 KiB qt5-rpm-macros noarch 0:5.15.18-2.fc44 fedora 1.6 KiB rav1e-libs aarch64 0:0.8.1-3.fc44 fedora 2.1 MiB rhash aarch64 0:1.4.5-4.fc44 fedora 394.5 KiB shared-mime-info aarch64 0:2.4-3.fc44 fedora 5.3 MiB spirv-tools-libs aarch64 0:2026.1-1.fc44 fedora 5.7 MiB svt-av1-libs aarch64 0:3.1.2-2.fc44 fedora 3.4 MiB tzdata noarch 0:2026c-2.fc44 updates 1.2 MiB vim-filesystem noarch 2:9.2.1129-1.fc44 updates 40.0 B vulkan-headers noarch 0:1.4.341.0-1.fc44 fedora 36.1 MiB vulkan-loader aarch64 0:1.4.341.0-1.fc44 fedora 613.4 KiB vulkan-loader-devel aarch64 0:1.4.341.0-1.fc44 fedora 8.0 KiB xcb-util aarch64 0:0.4.1-9.fc44 fedora 70.2 KiB xcb-util-image aarch64 0:0.4.1-9.fc44 fedora 70.0 KiB xcb-util-keysyms aarch64 0:0.4.1-9.fc44 fedora 68.5 KiB xcb-util-renderutil aarch64 0:0.3.10-9.fc44 fedora 72.3 KiB xcb-util-wm aarch64 0:0.4.2-9.fc44 fedora 137.0 KiB xkeyboard-config noarch 0:2.47-1.fc44 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB Transaction Summary: Installing: 248 packages Total size of inbound packages is 235 MiB. Need to download 235 MiB. After this operation, 878 MiB extra will be used (install 878 MiB, remove 0 B). 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Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790812800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-7.fc44.src.rpm Updating and loading repositories: updates 100% | 30.1 KiB/s | 10.3 KiB | 00m00s fedora 100% | 30.6 KiB/s | 10.5 KiB | 00m00s Copr repository 100% | 31.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "libappstream-glib-0.8.4-1.fc44.aarch64" is already installed. Package "desktop-file-utils-0.28-5.fc44.aarch64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "fftw-devel-3.3.10-17.fc44.aarch64" is already installed. Package "gcc-c++-16.2.1-2.fc44.aarch64" is already installed. Package "git-2.55.0-1.fc44.aarch64" is already installed. Package "libpng-devel-2:1.6.58-1.fc44.aarch64" is already installed. Package "libtiff-devel-4.7.2-1.fc44.aarch64" is already installed. Package "mesa-libGL-devel-26.2.3-1.fc44.aarch64" is already installed. Package "mesa-libGLU-devel-9.0.3-8.fc44.aarch64" is already installed. Package "python3-3.14.7-1.fc44.aarch64" is already installed. Package "python3-devel-3.14.7-1.fc44.aarch64" is already installed. Package "qt5-qtbase-devel-5.15.18-2.fc44.aarch64" is already installed. Package "qt5-qtsvg-devel-5.15.18-2.fc44.aarch64" is already installed. Package "zlib-ng-compat-devel-2.3.3-3.fc44.aarch64" is already installed. Nothing to do. Finish: build setup for mrtrix3-3.0.8-7.fc44.src.rpm Start: rpmbuild mrtrix3-3.0.8-7.fc44.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1790812800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.EmFiKC Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.eB9gkA + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar xf /builddir/build/SOURCES/eigen-3.4.0.tar.gz + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.MgQiki + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + unset ARCH + export NUMBER_OF_PROCESSORS=1 + NUMBER_OF_PROCESSORS=1 + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + export 'EIGEN_CFLAGS=-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + EIGEN_CFLAGS='-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + ./configure MRtrix build type requested: release version Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: Header: 1.6.58; library: 1.6.58 Checking for FFTW library: fftw-3.3.10-neon Checking for Qt moc: /usr/bin/moc-qt5 (version 5.15.18) Checking for Qt qmake: /usr/bin/qmake-qt5 (version 5.15.18) Checking for Qt rcc: /usr/bin/rcc-qt5 (version 5.15.18) Checking for Qt: 5.15.18 writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/548) [CC] tmp/src/exec_version.o ( 2/548) [CC] tmp/core/image_io/pipe.o ( 3/548) [CC] tmp/core/file/dicom/select_cmdline.o ( 4/548) [CC] tmp/core/file/dicom/image.o ( 5/548) [CC] tmp/core/math/stats/shuffle.o ( 6/548) [CC] tmp/core/stride.o ( 7/548) [CC] tmp/core/file/dicom/series.o ( 8/548) [CC] tmp/core/filter/connected_components.o ( 9/548) [CC] tmp/core/image_io/default.o ( 10/548) [CC] tmp/core/formats/mrtrix_sparse_legacy.o ( 11/548) [CC] tmp/core/exception.o ( 12/548) [CC] tmp/core/formats/list.o ( 13/548) [CC] tmp/core/metadata/phase_encoding.o ( 14/548) [CC] tmp/core/signal_handler.o ( 15/548) [CC] tmp/core/file/dicom/mapper.o ( 16/548) [CC] tmp/core/formats/mgh.o ( 17/548) [CC] tmp/core/file/dicom/patient.o ( 18/548) [CC] tmp/core/adapter/reslice.o ( 19/548) [CC] tmp/core/math/SH.o ( 20/548) [CC] tmp/core/math/betainc.o ( 21/548) [CC] tmp/core/image_io/scratch.o ( 22/548) [CC] tmp/core/image_io/variable_scaling.o ( 23/548) [CC] tmp/core/formats/dicom.o ( 24/548) [CC] tmp/core/formats/png.o ( 25/548) [CC] tmp/core/formats/mrtrix_utils.o ( 26/548) [CC] tmp/core/image_io/ram.o ( 27/548) [CC] tmp/core/formats/mri.o ( 28/548) [CC] tmp/core/datatype.o ( 29/548) [CC] tmp/core/file/dicom/quick_scan.o ( 30/548) [CC] tmp/core/header.o ( 31/548) [CC] tmp/core/file/nifti_utils.o ( 32/548) [CC] tmp/core/math/stats/fwe.o ( 33/548) [CC] tmp/core/image_io/null.o ( 34/548) [CC] tmp/core/image_io/png.o ( 35/548) [CC] tmp/core/math/stats/import.o ( 36/548) [CC] tmp/core/image_io/tiff.o ( 37/548) [CC] tmp/core/math/stats/glm.o ( 38/548) [CC] tmp/core/version.o ( 39/548) [CC] tmp/core/formats/xds.o ( 40/548) [CC] tmp/core/stats.o ( 41/548) [CC] tmp/core/formats/par.o ( 42/548) [CC] tmp/core/app.o ( 43/548) [CC] tmp/core/image_io/fetch_store.o ( 44/548) [CC] tmp/core/file/config.o ( 45/548) [CC] tmp/core/file/key_value.o ( 46/548) [CC] tmp/core/dwi/shells.o ( 47/548) [CC] tmp/core/image_io/base.o ( 48/548) [CC] tmp/core/thread.o ( 49/548) [CC] tmp/core/file/dicom/study.o ( 50/548) [CC] tmp/core/math/erfinv.o ( 51/548) [CC] tmp/core/formats/pipe.o ( 52/548) [CC] tmp/core/dwi/gradient.o ( 53/548) [CC] tmp/core/image_io/mosaic.o ( 54/548) [CC] tmp/core/algo/histogram.o ( 55/548) [CC] tmp/core/progressbar.o ( 56/548) [CC] tmp/core/formats/nifti1_gz.o ( 57/548) [CC] tmp/core/formats/ram.o ( 58/548) [CC] tmp/core/math/zstatistic.o ( 59/548) [CC] tmp/core/file/name_parser.o ( 60/548) [CC] tmp/core/math/average_space.o ( 61/548) [CC] tmp/core/formats/nifti2.o ( 62/548) [CC] tmp/core/image_io/sparse.o ( 63/548) [CC] tmp/core/file/dicom/element.o ( 64/548) [CC] tmp/core/formats/nifti2_gz.o ( 65/548) [CC] tmp/core/axes.o ( 66/548) [CC] tmp/core/formats/mrtrix_gz.o ( 67/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 68/548) [CC] tmp/core/formats/nifti1.o ( 69/548) [CC] tmp/core/formats/mgz.o ( 70/548) [CC] tmp/core/file/ofstream.o ( 71/548) [CC] tmp/core/file/tiff.o ( 72/548) [CC] tmp/core/file/dicom/tree.o ( 73/548) [CC] tmp/core/file/mgh.o ( 74/548) [CC] tmp/core/file/png.o ( 75/548) [CC] tmp/core/file/dicom/dict.o ( 76/548) [CC] tmp/core/metadata/slice_encoding.o ( 77/548) [CC] tmp/core/image_io/gz.o ( 78/548) [CC] tmp/core/file/mmap.o ( 79/548) [CC] tmp/core/mrtrix.o ( 80/548) [CC] tmp/core/math/bessel.o ( 81/548) [CC] tmp/core/misc/bitset.o ( 82/548) [CC] tmp/core/formats/tiff.o ( 83/548) [CC] tmp/core/metadata/bids.o ( 84/548) [CC] tmp/core/formats/mrtrix.o ( 85/548) [LD] lib/libmrtrix.so ( 86/548) [CC] tmp/cmd/warpinvert.o ( 87/548) [LB] bin/warpinvert ( 88/548) [CC] tmp/cmd/warpinit.o ( 89/548) [LB] bin/warpinit ( 90/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ ( 91/548) [LB] bin/warpcorrect ( 92/548) [CC] tmp/cmd/warpconvert.o ( 93/548) [LB] bin/warpconvert ( 94/548) [CC] tmp/cmd/warp2metric.o ( 95/548) [LB] bin/warp2metric ( 96/548) [CC] tmp/src/connectome/connectome.o ( 97/548) [CC] tmp/src/surface/freesurfer.o ( 98/548) [CC] tmp/cmd/voxel2mesh.o ( 99/548) [CC] tmp/src/connectome/lut.o (100/548) [CC] tmp/src/surface/scalar.o (101/548) [CC] tmp/src/surface/mesh.o (102/548) [CC] tmp/src/surface/polygon.o (103/548) [LB] bin/voxel2mesh (104/548) [CC] tmp/cmd/voxel2fixel.o (105/548) [LB] bin/voxel2fixel (106/548) [CC] tmp/src/stats/permtest.o (107/548) [CC] tmp/cmd/vectorstats.o (108/548) [LB] bin/vectorstats (109/548) [CC] tmp/src/dwi/tractography/file_base.o (110/548) [CC] tmp/src/dwi/tractography/roi.o (111/548) [CC] tmp/src/dwi/tractography/rng.o (112/548) [CC] tmp/cmd/tsfvalidate.o (113/548) [CC] tmp/src/dwi/tractography/properties.o (114/548) [CC] tmp/src/dwi/tractography/seeding/list.o (115/548) [LB] bin/tsfvalidate (116/548) [CC] tmp/cmd/tsfthreshold.o (117/548) [LB] bin/tsfthreshold (118/548) [CC] tmp/cmd/tsfsmooth.o (119/548) [LB] bin/tsfsmooth (120/548) [CC] tmp/cmd/tsfmult.o (121/548) [LB] bin/tsfmult (122/548) [CC] tmp/cmd/tsfinfo.o (123/548) [LB] bin/tsfinfo (124/548) [CC] tmp/cmd/tsfdivide.o (125/548) [LB] bin/tsfdivide (126/548) [CC] tmp/cmd/transformconvert.o (127/548) [LB] bin/transformconvert (128/548) [CC] tmp/cmd/transformcompose.o (129/548) [LB] bin/transformcompose (130/548) [CC] tmp/cmd/transformcalc.o (131/548) [LB] bin/transformcalc (132/548) [CC] tmp/cmd/tensor2metric.o (133/548) [LB] bin/tensor2metric (134/548) [CC] tmp/cmd/tcktransform.o (135/548) [LB] bin/tcktransform (136/548) [CC] tmp/cmd/tckstats.o (137/548) [CC] tmp/src/dwi/tractography/weights.o (138/548) [LB] bin/tckstats (139/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (140/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (141/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (142/548) [CC] tmp/src/dwi/directions/set.o (143/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o (144/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o (145/548) [CC] tmp/src/dwi/directions/predefined.o (146/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (147/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (148/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (149/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (150/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o (151/548) [CC] tmp/src/dwi/directions/mask.o (152/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (153/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (154/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (155/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (156/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o (157/548) [CC] tmp/src/dwi/fmls.o (158/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (159/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (160/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (161/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (162/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (163/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (164/548) [CC] tmp/src/dwi/tractography/resampling/arc.o (165/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o (166/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (167/548) [CC] tmp/src/dwi/tractography/ACT/act.o (168/548) [LB] bin/tcksift2 (169/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (170/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (171/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (172/548) [LB] bin/tcksift (173/548) [CC] tmp/cmd/tcksample.o (174/548) [LB] bin/tcksample (175/548) [CC] tmp/cmd/tckresample.o (176/548) [LB] bin/tckresample (177/548) [CC] tmp/cmd/tckmap.o (178/548) [CC] tmp/src/dwi/tractography/mapping/writer.o (179/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (180/548) [LB] bin/tckmap (181/548) [CC] tmp/cmd/tckinfo.o (182/548) [LB] bin/tckinfo (183/548) [CC] tmp/src/dwi/tractography/GT/gt.o (184/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (185/548) [CC] tmp/cmd/tckglobal.o (186/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (187/548) [CC] tmp/src/dwi/tractography/GT/particle.o (188/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (189/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (190/548) [LB] bin/tckglobal (191/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (192/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o (193/548) [CC] tmp/src/dwi/tractography/tracking/shared.o (194/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (195/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (196/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o (197/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (198/548) [CC] tmp/src/dwi/tractography/tracking/method.o (199/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (200/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (201/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2217[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (202/548) [CC] tmp/src/dwi/tractography/seeding/basic.o (203/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (204/548) [LB] bin/tckgen (205/548) [CC] tmp/src/dwi/tractography/editing/worker.o (206/548) [CC] tmp/src/dwi/tractography/editing/editing.o (207/548) [CC] tmp/cmd/tckedit.o (208/548) [CC] tmp/src/dwi/tractography/editing/receiver.o (209/548) [LB] bin/tckedit (210/548) [CC] tmp/cmd/tckdfc.o (211/548) [LB] bin/tckdfc (212/548) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/ConfigureVectorization.h:392, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:22, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: In function ‘float32x2_t vld1_f32(const float32_t*)’, inlined from ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = __Float32x2_t]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/arch/NEON/PacketMath.h:1710:45, inlined from ‘Packet Eigen::internal::ploadt(const typename unpacket_traits::type*) [with Packet = __Float32x2_t; int Alignment = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘PacketType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:596:81, inlined from ‘PacketType Eigen::internal::redux_evaluator<_XprType>::packetByOuterInner(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:386:54, inlined from ‘static PacketType Eigen::internal::redux_vec_unroller::run(const Evaluator&, const Func&) [with PacketType = __Float32x2_t; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:177:66, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:344:115, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/lib/gcc/aarch64-redhat-linux/16/include/arm_neon.h:11978:36: warning: ‘*(__Float32x2_t*)((char*)&normal + offsetof(Eigen::Vector3f, Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[0]))’ may be used uninitialized [-Wmaybe-uninitialized] 11978 | return __builtin_aarch64_ld1v2sf ((const __builtin_aarch64_simd_sf *) __a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ (213/548) [LB] bin/tckconvert (214/548) [CC] tmp/cmd/tck2fixel.o (215/548) [LB] bin/tck2fixel (216/548) [CC] tmp/cmd/tck2connectome.o (217/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o (218/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o (219/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (220/548) [LB] bin/tck2connectome (221/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (222/548) [CC] tmp/src/gui/dwi/render_frame_moc.o (223/548) [CC] tmp/src/gui/dialog/dicom.o (224/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp (225/548) [CC] tmp/src/gui/shview/render_window_moc.o (226/548) [CC] tmp/src/gui/shapes/halfsphere.o (227/548) [CC] tmp/src/gui/dialog/list.o (228/548) [CC] tmp/src/gui/gui.o (229/548) [CC] tmp/src/gui/opengl/font.o (230/548) [CC] tmp/src/gui/opengl/shader.o (231/548) [CC] tmp/src/gui/projection.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (232/548) [RCC] tmp/src/gui/shview/icons.cpp (233/548) [CC] tmp/src/gui/shview/icons.o (234/548) [CC] tmp/cmd/shview.o (235/548) [CC] tmp/src/gui/shview/render_window.o (236/548) [CC] tmp/src/gui/opengl/lighting.o (237/548) [MOC] tmp/src/gui/color_button_moc.cpp (238/548) [CC] tmp/src/gui/color_button_moc.o (239/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (240/548) [CC] tmp/src/gui/opengl/lighting_moc.o (241/548) [CC] tmp/src/gui/crosshair.o (242/548) [CC] tmp/src/gui/dialog/progress.o (243/548) [CC] tmp/src/gui/dwi/render_frame.o (244/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o (245/548) [CC] tmp/src/gui/dialog/report_exception.o (246/548) [CC] tmp/src/gui/dialog/dialog.o (247/548) [CC] tmp/src/gui/shview/file_open.o (248/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp (249/548) [CC] tmp/src/gui/lighting_dock_moc.o (250/548) [CC] tmp/src/gui/dwi/renderer.o (251/548) [CC] tmp/src/gui/dialog/file.o (252/548) [CC] tmp/src/gui/color_button.o (253/548) [CC] tmp/src/gui/lighting_dock.o (254/548) [CC] tmp/src/gui/opengl/gl.o (255/548) [LB] bin/shview (256/548) [CC] tmp/cmd/shconv.o (257/548) [LB] bin/shconv (258/548) [CC] tmp/cmd/shbasis.o (259/548) [LB] bin/shbasis (260/548) [CC] tmp/cmd/sh2response.o (261/548) [LB] bin/sh2response (262/548) [CC] tmp/cmd/sh2power.o (263/548) [LB] bin/sh2power (264/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.713[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (265/548) [LB] bin/sh2peaks (266/548) [CC] tmp/cmd/sh2amp.o (267/548) [CC] tmp/src/dwi/directions/file.o (268/548) [LB] bin/sh2amp (269/548) [CC] tmp/cmd/peaks2fixel.o (270/548) [LB] bin/peaks2fixel (271/548) [CC] tmp/cmd/peaks2amp.o (272/548) [LB] bin/peaks2amp (273/548) [CC] tmp/cmd/mtnormalise.o (274/548) [LB] bin/mtnormalise (275/548) [CC] tmp/src/gui/mrview/mode/lightbox.o (276/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (277/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (278/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (279/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o (280/548) [CC] tmp/src/gui/mrview/colourmap_button.o (281/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (282/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (283/548) [CC] tmp/src/gui/mrview/colourbars.o (284/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (285/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (286/548) [CC] tmp/src/gui/mrview/volume.o (287/548) [CC] tmp/src/gui/mrview/tool/transform.o (288/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o (289/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp (290/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o (291/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (292/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (293/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (294/548) [CC] tmp/src/gui/mrview/sync/processlock.o (295/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (296/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (297/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (298/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (299/548) [CC] tmp/src/gui/mrview/window.o (300/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (301/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (302/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (303/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (304/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (305/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (306/548) [CC] tmp/src/gui/mrview/displayable_moc.o (307/548) [CC] tmp/src/gui/dialog/opengl.o (308/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o (309/548) [CC] tmp/src/gui/shapes/cube.o (310/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (311/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (312/548) [CC] tmp/src/surface/mesh_multi.o (313/548) [CC] tmp/src/gui/mrview/mode/volume.o (314/548) [CC] tmp/src/gui/mrview/gui_image.o (315/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (316/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (317/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (318/548) [CC] tmp/src/gui/dialog/image_properties_moc.o (319/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (320/548) [CC] tmp/src/gui/mrview/spin_box_moc.o (321/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (322/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (323/548) [CC] tmp/src/gui/mrview/mode/ortho.o (324/548) [CC] tmp/src/gui/dialog/image_properties.o (325/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o (326/548) [CC] tmp/src/gui/mrview/mode/base.o (327/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o (328/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (329/548) [CC] tmp/src/gui/mrview/displayable.o (330/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (331/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (332/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (333/548) [MOC] tmp/src/gui/mrview/window_moc.cpp (334/548) [CC] tmp/src/gui/mrview/window_moc.o (335/548) [CC] tmp/src/gui/mrview/tool/overlay.o (336/548) [CC] tmp/src/gui/mrview/adjust_button.o (337/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o (338/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (339/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (340/548) [CC] tmp/src/gui/mrview/sync/client.o (341/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (342/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (343/548) [CC] tmp/src/gui/mrview/tool/view.o (344/548) [CC] tmp/src/gui/mrview/tool/odf/item.o (345/548) [CC] tmp/src/gui/shapes/sphere.o (346/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o (347/548) [CC] tmp/src/colourmap.o (348/548) [CC] tmp/src/gui/mrview/tool/odf/model.o (349/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (350/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (351/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (352/548) [RCC] tmp/src/gui/mrview/icons.cpp (353/548) [CC] tmp/src/gui/mrview/icons.o (354/548) [CC] tmp/src/gui/mrview/mode/slice.o (355/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (356/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (357/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (358/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp (359/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o (360/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (361/548) [CC] tmp/src/gui/mrview/tool/base.o (362/548) [CC] tmp/src/gui/mrview/combo_box_error.o (363/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (364/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (365/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (366/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (367/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (368/548) [CC] tmp/src/gui/mrview/tool/view_moc.o (369/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (370/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (371/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (372/548) [CC] tmp/src/gui/cursor.o (373/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (374/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (375/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o (376/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (377/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o (378/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (379/548) [CC] tmp/cmd/mrview.o (380/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o (381/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (382/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (383/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (384/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (385/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (386/548) [CC] tmp/src/gui/mrview/file_open.o (387/548) [CC] tmp/src/gui/shapes/cylinder.o (388/548) [LB] bin/mrview (389/548) [CC] tmp/src/registration/multi_contrast.o (390/548) [CC] tmp/cmd/mrtransform.o (391/548) [LB] bin/mrtransform (392/548) [CC] tmp/cmd/mrthreshold.o (393/548) [LB] bin/mrthreshold (394/548) [CC] tmp/cmd/mrstats.o (395/548) [LB] bin/mrstats (396/548) [CC] tmp/src/registration/transform/initialiser.o (397/548) [CC] tmp/src/registration/linear.o (398/548) [CC] tmp/cmd/mrregister.o (399/548) [CC] tmp/src/registration/transform/convergence_check.o (400/548) [CC] tmp/src/registration/transform/affine.o (401/548) [CC] tmp/src/registration/nonlinear.o (402/548) [CC] tmp/src/registration/transform/initialiser_helpers.o (403/548) [CC] tmp/src/registration/transform/rigid.o (404/548) [LB] bin/mrregister (405/548) [CC] tmp/cmd/mrmetric.o (406/548) [LB] bin/mrmetric (407/548) [CC] tmp/cmd/mrmath.o (408/548) [LB] bin/mrmath (409/548) [CC] tmp/cmd/mrinfo.o (410/548) [LB] bin/mrinfo (411/548) [CC] tmp/cmd/mrhistogram.o (412/548) [LB] bin/mrhistogram (413/548) [CC] tmp/cmd/mrhistmatch.o (414/548) [LB] bin/mrhistmatch (415/548) [CC] tmp/cmd/mrgrid.o (416/548) [LB] bin/mrgrid (417/548) [CC] tmp/cmd/mrfilter.o (418/548) [LB] bin/mrfilter (419/548) [CC] tmp/cmd/mredit.o (420/548) [LB] bin/mredit (421/548) [CC] tmp/cmd/mrdump.o (422/548) [LB] bin/mrdump (423/548) [CC] tmp/cmd/mrdegibbs.o (424/548) [LB] bin/mrdegibbs (425/548) [CC] tmp/cmd/mrconvert.o (426/548) [LB] bin/mrconvert (427/548) [CC] tmp/cmd/mrcolour.o (428/548) [LB] bin/mrcolour (429/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (430/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (431/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (432/548) [LB] bin/mrclusterstats (433/548) [CC] tmp/cmd/mrcheckerboardmask.o (434/548) [LB] bin/mrcheckerboardmask (435/548) [CC] tmp/cmd/mrcentroid.o (436/548) [LB] bin/mrcentroid (437/548) [CC] tmp/cmd/mrcat.o (438/548) [LB] bin/mrcat (439/548) [CC] tmp/cmd/mrcalc.o (440/548) [LB] bin/mrcalc (441/548) [CC] tmp/cmd/mraverageheader.o (442/548) [LB] bin/mraverageheader (443/548) [CC] tmp/cmd/meshfilter.o (444/548) [CC] tmp/src/surface/filter/smooth.o (445/548) [CC] tmp/src/surface/filter/base.o (446/548) [LB] bin/meshfilter (447/548) [CC] tmp/cmd/meshconvert.o (448/548) [CC] tmp/src/surface/filter/vertex_transform.o (449/548) [LB] bin/meshconvert (450/548) [CC] tmp/cmd/mesh2voxel.o (451/548) [CC] tmp/src/surface/algo/mesh2image.o (452/548) [LB] bin/mesh2voxel (453/548) [CC] tmp/cmd/maskfilter.o (454/548) [LB] bin/maskfilter (455/548) [CC] tmp/cmd/maskdump.o (456/548) [LB] bin/maskdump (457/548) [CC] tmp/cmd/labelstats.o (458/548) [LB] bin/labelstats (459/548) [CC] tmp/cmd/labelconvert.o (460/548) [LB] bin/labelconvert (461/548) [CC] tmp/cmd/label2mesh.o (462/548) [LB] bin/label2mesh (463/548) [CC] tmp/cmd/label2colour.o (464/548) [LB] bin/label2colour (465/548) [CC] tmp/cmd/fod2fixel.o (466/548) [LB] bin/fod2fixel (467/548) [CC] tmp/cmd/fod2dec.o (468/548) [LB] bin/fod2dec (469/548) [CC] tmp/cmd/fixelreorient.o (470/548) [LB] bin/fixelreorient (471/548) [CC] tmp/src/fixel/filter/connect.o (472/548) [CC] tmp/src/fixel/matrix.o (473/548) [CC] tmp/src/stats/cfe.o (474/548) [CC] tmp/cmd/fixelfilter.o (475/548) [CC] tmp/src/fixel/index_remapper.o (476/548) [CC] tmp/src/fixel/filter/smooth.o (477/548) [LB] bin/fixelfilter (478/548) [CC] tmp/cmd/fixelcrop.o (479/548) [LB] bin/fixelcrop (480/548) [CC] tmp/cmd/fixelcorrespondence.o (481/548) [LB] bin/fixelcorrespondence (482/548) [CC] tmp/cmd/fixelconvert.o (483/548) [LB] bin/fixelconvert (484/548) [CC] tmp/cmd/fixelconnectivity.o (485/548) [LB] bin/fixelconnectivity (486/548) [CC] tmp/cmd/fixelcfestats.o (487/548) [LB] bin/fixelcfestats (488/548) [CC] tmp/cmd/fixel2voxel.o (489/548) [LB] bin/fixel2voxel (490/548) [CC] tmp/cmd/fixel2tsf.o (491/548) [LB] bin/fixel2tsf (492/548) [CC] tmp/cmd/fixel2sh.o (493/548) [LB] bin/fixel2sh (494/548) [CC] tmp/cmd/fixel2peaks.o (495/548) [LB] bin/fixel2peaks (496/548) [CC] tmp/cmd/dwiextract.o (497/548) [LB] bin/dwiextract (498/548) [CC] tmp/cmd/dwidenoise.o (499/548) [LB] bin/dwidenoise (500/548) [CC] tmp/cmd/dwi2tensor.o (501/548) [LB] bin/dwi2tensor (502/548) [CC] tmp/cmd/dwi2mask.o (503/548) [LB] bin/dwi2mask (504/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o (505/548) [CC] tmp/cmd/dwi2fod.o (506/548) [CC] tmp/src/dwi/sdeconv/csd.o (507/548) [LB] bin/dwi2fod (508/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:580, from /usr/include/c++/16/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (509/548) [LB] bin/dwi2adc (510/548) [CC] tmp/cmd/dirstat.o (511/548) [LB] bin/dirstat (512/548) [CC] tmp/cmd/dirsplit.o (513/548) [LB] bin/dirsplit (514/548) [CC] tmp/cmd/dirorder.o (515/548) [LB] bin/dirorder (516/548) [CC] tmp/cmd/dirmerge.o (517/548) [LB] bin/dirmerge (518/548) [CC] tmp/cmd/dirgen.o (519/548) [LB] bin/dirgen (520/548) [CC] tmp/cmd/dirflip.o (521/548) [LB] bin/dirflip (522/548) [CC] tmp/cmd/dcminfo.o (523/548) [LB] bin/dcminfo (524/548) [CC] tmp/cmd/dcmedit.o (525/548) [LB] bin/dcmedit (526/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (527/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/548) [LB] bin/connectomestats (529/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (530/548) [LB] bin/connectomeedit (531/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (532/548) [CC] tmp/cmd/connectome2tck.o (533/548) [CC] tmp/src/dwi/tractography/connectome/extract.o (534/548) [LB] bin/connectome2tck (535/548) [CC] tmp/cmd/amp2sh.o (536/548) [LB] bin/amp2sh (537/548) [CC] tmp/cmd/amp2response.o (538/548) [LB] bin/amp2response (539/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (540/548) [LB] bin/afdconnectivity (541/548) [CC] tmp/cmd/5ttedit.o (542/548) [LB] bin/5ttedit (543/548) [CC] tmp/cmd/5ttcheck.o (544/548) [LB] bin/5ttcheck (545/548) [CC] tmp/cmd/5tt2vis.o (546/548) [LB] bin/5tt2vis (547/548) [CC] tmp/cmd/5tt2gmwmi.o (548/548) [LB] bin/5tt2gmwmi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.GhKvPT + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + binary_name=mrview + '[' mrview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + binary_name=shview + '[' shview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + grep -q python + desktop-file-install --dir=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications --set-key=Version --set-value=1.0 --remove-key=Value --set-key=Keywords '--set-value=MRI;diffusion;tractography;DWI;neuroimaging;' --set-key=Categories '--set-value=Science;MedicalSoftware;' mrview.desktop + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/16x16/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/32x32/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/48x48/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/64x64/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/128x128/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/application-x-mrtrix.png + cat + install -Dpm0644 mrtrix3-mime.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/mime/packages/mrtrix3.xml + install -Dpm 0644 /builddir/build/SOURCES/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + appstream-util validate-relax --nonet /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml: OK + /usr/bin/find-debuginfo -j1 --strict-build-id -m -i --build-id-seed 3.0.8-7.fc44 --unique-debug-suffix -3.0.8-7.fc44.aarch64 --unique-debug-src-base mrtrix3-3.0.8-7.fc44.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 113 files DWARF-compressing 113 files sepdebugcrcfix: Updated 113 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-7.fc44.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-7.fc44.aarch64/eigen-3.4.0/Eigen/src/Core/util/Meta.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-7.fc44.aarch64/eigen-3.4.0/Eigen/src/Core/util/BlasUtil.h is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 153 directories and 1397 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr Scanned 152 directories and 1397 files, considered 1267 files, read 73 files, linked 3 files, 0 errors sum of sizes of linked files: 0 bytes Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.SjJ1w2 + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + desktop-file-validate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications/mrview.desktop + test -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-7.fc44.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.e6YAVX + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MSGteb + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: application() application(mrview.desktop) bundled(eigen3) = 3.4.0 libmrtrix.so()(64bit) metainfo() metainfo(mrview.metainfo.xml) mimehandler(application/x-image-analyze) mimehandler(application/x-image-mgh) mimehandler(application/x-image-mgz) mimehandler(application/x-mrtrix) mimehandler(application/x-mrtrix-gz) mimehandler(application/x-nifti) mimehandler(application/x-nifti-gz) mrtrix3 = 3.0.8-7.fc44 mrtrix3(aarch-64) = 3.0.8-7.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmrtrix.so()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: mrtrix3-debugsource-3.0.8-7.fc44.aarch64 Provides: mrtrix3-debugsource = 3.0.8-7.fc44 mrtrix3-debugsource(aarch-64) = 3.0.8-7.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-7.fc44.aarch64 Provides: debuginfo(build-id) = 036a81fd53befaad026c960dbdd76f15a9f3ba0d debuginfo(build-id) = 04ac9716b6c79cc28a1e67e73778f6bb0af478ba debuginfo(build-id) = 0515a30c197d72fd7204aa8bb8360bc308410d8d debuginfo(build-id) = 07a530296367441fcbdbc12a228fb3175a182954 debuginfo(build-id) = 0a464658b90d41004c3fa06a8f3e545e30581990 debuginfo(build-id) = 0c04e8aaa4b8c63dcf0aa52e7443d43835185851 debuginfo(build-id) = 0c8ba5f87151c02206e25e5301b636523b32ffa2 debuginfo(build-id) = 0ce13a380f14638201a8bc272f727f75c50b4ca4 debuginfo(build-id) = 0da354aba1c1df15d1f3f98acc705809843b6118 debuginfo(build-id) = 11e0943895081b1120ac94b5378557db69d0cae6 debuginfo(build-id) = 12027fa5371d0f50debf14bc4487003350cad7d0 debuginfo(build-id) = 16886e232ce81f29d565c4ecc0fe9e4b0079c492 debuginfo(build-id) = 1fb2dc0af202f6a3c0c185fed2ef4975a8cc1174 debuginfo(build-id) = 1ff2a789564d8b6cdbac5144345a936b4e0cdb36 debuginfo(build-id) = 20993550ab1f859d927ad16cbb1d43a31cbf9323 debuginfo(build-id) = 20afa0371f3f968c32d147b591c3c04fa9b4708c debuginfo(build-id) = 212d58e42e2fdd42cef5dd3a7dd986bccc2092fe debuginfo(build-id) = 21c47338c922dc6bb16443f77f81fae7d7046e97 debuginfo(build-id) = 2810f16cb8cf5e53bb1852304d2f6bf810fb1081 debuginfo(build-id) = 2d515f6466cfe11f4dd6d80ef8554d2e33605299 debuginfo(build-id) = 2f02047b0e0ed90dc45174e9a2bddfd14d2f21b0 debuginfo(build-id) = 32174d5af9c63c54d35dbe1746ae0900a7c76bff debuginfo(build-id) = 3403ca8cc3e727b2cfddd3aa4e05751a2cfdc835 debuginfo(build-id) = 36b35451496c3663b958c2ec7e61e966a1cf31d0 debuginfo(build-id) = 3a07dd55695a38caa089dd2acd56d8e259144513 debuginfo(build-id) = 3a1145308d91eb29e6fc00e866288d1884bf4186 debuginfo(build-id) = 3d684045a48885b511ccb898a009ef4a118d5485 debuginfo(build-id) = 4135c06e5790b9b7d97b36182d1216a1a93a2786 debuginfo(build-id) = 420b835d00ff3889f0dae18830e7ce41b622a407 debuginfo(build-id) = 4242a9142ea5c6340cd000725d9569c923cb0c4f debuginfo(build-id) = 440622be03ecf82f6c52c2574552275872bc2359 debuginfo(build-id) = 47575c6cc4a8d2d22461b4bbc59d0751c8a0ba6c debuginfo(build-id) = 4aa6d3dea26a4d29ed46a4abb788c08bfcb20ce2 debuginfo(build-id) = 4cbc2b2f0be943250d1f166689818f10a41123ad debuginfo(build-id) = 50103cc0c18c964ef0621036ef0bae04ddedbef5 debuginfo(build-id) = 5418cedf977defa40834edf507828d02e506f923 debuginfo(build-id) = 602e49145d9b4057f720c0bb1492bcca2089c376 debuginfo(build-id) = 61dafb04937aa250c11186537104840e59dacec0 debuginfo(build-id) = 62bd34e7af7101fa463d87631793ad8d19e52592 debuginfo(build-id) = 62be16c2c3983e6c691511ba5c9b37714944eea2 debuginfo(build-id) = 678b41708a559a6decbab57ea0274ace8e8b7cfc debuginfo(build-id) = 68e6d380b1d8d43229a33b30877692e88696e5a1 debuginfo(build-id) = 6a2fa437cd429033fc7d0a12808d5bfe462c1c34 debuginfo(build-id) = 6abf6e734a7a218874f180e8afd93f059dc3ef8b debuginfo(build-id) = 6b014a253652b7b5d3bd38f43b4becce285c6c8f debuginfo(build-id) = 6f5bde9fa9c9d7e288b2b21ce032093780098be9 debuginfo(build-id) = 764f6d8e29706be04927d02bac74ede7b87ef937 debuginfo(build-id) = 77489a9067949a09202ffc3367e66ee5a77f9b3c debuginfo(build-id) = 778c1261fec38b1ac5bbe1453f054b9f879531fe debuginfo(build-id) = 7bad59ecac360beccbb28f93084917af75c75f51 debuginfo(build-id) = 7d9bcd2904bbd74af3da890b04c5ee652bc5142d debuginfo(build-id) = 7e13cb82c8a4d499ee927a760c9d6bd42a3db590 debuginfo(build-id) = 8018be56c1a5574cf653f5101b434057a65c8bc5 debuginfo(build-id) = 85cee406c8046a5e81b853002dd556fa4dcd4ebe debuginfo(build-id) = 88032da6b73e40628cc3fc1dde7557d369c32dfc debuginfo(build-id) = 8a6368e0c4752c059637a003ac28f0306c00809b debuginfo(build-id) = 8b23170765e3b3f11fd5be322ba2a6f99692eede debuginfo(build-id) = 8b3cf2a5ad7f42cc1534d5f1a30909597bac7eb0 debuginfo(build-id) = 90aa8cd32398691428b02664b6294fc9575b6e34 debuginfo(build-id) = 917e201b27cfdd0a1a3ad2fc649aef2ae6757647 debuginfo(build-id) = 9297176a1256699f6bb584d25d895fc5ccf871b9 debuginfo(build-id) = 9619dbdf70f714fe79557f2bc010ff39840e8f53 debuginfo(build-id) = 973ae841b2199ddb0737998c46910d56c0f7542f debuginfo(build-id) = 97c26d393b1854d9a1facc1df145b977df99fa3d debuginfo(build-id) = 988888b12912bc2db162b9c4aba7142fd977c0cf debuginfo(build-id) = 991045c521135b331877e3318e302358011302db debuginfo(build-id) = 9d547accde196ad7a24972954430c5dd17b68783 debuginfo(build-id) = 9d63377f8ed9dd70cf2e6eeb1a87875d0221fb14 debuginfo(build-id) = a229e0a8efb4c446585bd13dad2bf90564091316 debuginfo(build-id) = a6405adb0ceeae673b936f7c5f0a49215b96caee debuginfo(build-id) = affbf12775eae3b68f5ff58361e326be45905f44 debuginfo(build-id) = b4294347ac67d584b0ff9ad23f585385452b6f3a debuginfo(build-id) = b7a9e8621b3c12e83a05dda60323c1cdcbaf5a46 debuginfo(build-id) = ba37a3fef2e7c7c759964ecab043b1f97452bc4e debuginfo(build-id) = bc5a21f7795e46ed81799f150a72c0de688132c8 debuginfo(build-id) = bcea1bb38f3a325341456dba14b6212498bfe237 debuginfo(build-id) = bdc9b085ac80e82e22f138126868aa33374527fd debuginfo(build-id) = be958ff89e2672cdfa767977916fa5a88e9acc93 debuginfo(build-id) = bee168bb8782ac614610be2821b0dfeada16484e debuginfo(build-id) = c22e3b4b17042dc3d4f840fa9bc5b5adcb8c1a16 debuginfo(build-id) = c33bd4f9b03693c926eba54d52ef204e59c93817 debuginfo(build-id) = c4231563e63e5b69212df02f4df27324f9b65f6f debuginfo(build-id) = c52c54c1de2e74c2d63c13166c5591eba3067897 debuginfo(build-id) = c6f2deb5f5e0bbc60277e760b9e94e3911d55291 debuginfo(build-id) = c858d150afbedf69e349f66efacbc9981cf30d4c debuginfo(build-id) = c937bf993e5d23094563a9dbc3932c634acdd9b9 debuginfo(build-id) = cb98ffc76551b52a3a3cbcc573d30b6cc39d9385 debuginfo(build-id) = cc734a3569be7a768eeaee088fc6181a87ff0150 debuginfo(build-id) = ce61d0a790b62a2e4274eb623c6407285b4b1aee debuginfo(build-id) = cffedeab8d6a5683e208839c65f7ec1f1a6c94a1 debuginfo(build-id) = d0df2795549274752f10b818d3c7f747618159b4 debuginfo(build-id) = d28a406fa30ca0cfe8abbd1ea03b1f4580434b61 debuginfo(build-id) = d58a4151e5177bb41777f8a7dabc88b5339b304d debuginfo(build-id) = d664d7525a0cf96a0a4c29ef9dace5827c89a3ce debuginfo(build-id) = d67012481456b6f2adfa539fed5695ec5a2a9a2a debuginfo(build-id) = d7f229f9fd54db8222a4f2b78469aed95ad9587e debuginfo(build-id) = db481b8feb84347cf195eda4078c298c5b1d2625 debuginfo(build-id) = dbabc80030f174b3ba63db0f0227a5b91e7db00a debuginfo(build-id) = dbbfc62ff10314b7cd46b098f1913fd42484965a debuginfo(build-id) = dda17f4e1add50b51bbe368b95725947e2d89fe4 debuginfo(build-id) = dda3a14bd47e83208068e1a4886f5ec621134353 debuginfo(build-id) = dfc7f473c3eafd3ec22383ddfe3fdc4343394f18 debuginfo(build-id) = e00a0095371537597c45eaf7efb2eda6d5117e86 debuginfo(build-id) = e28b4d56d17a8ef1416f42fa83af0dc97822920d debuginfo(build-id) = ea6a533eca9a8fd9e21b4f16850588520e41f610 debuginfo(build-id) = ef014ae35283afde8caf6800cbf0b4f99e273831 debuginfo(build-id) = f1e1650dff7371c6a3c2960d3d435c53483d8972 debuginfo(build-id) = f476fce1e9b35a2b4704ea0aac901e4f027d1467 debuginfo(build-id) = f495a872170c3dc9aed719c5ebae575205a5e791 debuginfo(build-id) = f90b6b55ae05710263c371ee22cf0fe8b6c2733b debuginfo(build-id) = fbd4e073229efcd929ab16c3e2a7183c00b1f094 debuginfo(build-id) = fd76099fe0b6810cb353a3bd0e64f0785455c968 debuginfo(build-id) = ff0f218c3cb72ceb2550840b82789110c67d4015 libmrtrix.so-3.0.8-7.fc44.aarch64.debug()(64bit) mrtrix3-debuginfo = 3.0.8-7.fc44 mrtrix3-debuginfo(aarch-64) = 3.0.8-7.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(aarch-64) = 3.0.8-7.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-7.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-7.fc44.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-7.fc44.aarch64.rpm RPM build warnings: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-7.fc44.src.rpm Finish: build phase for mrtrix3-3.0.8-7.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-aarch64-1790964586.274326/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-7.fc44.src.rpm) Config(child) 94 minutes 21 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "7.fc44", "arch": "aarch64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "7.fc44", "arch": "src" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "7.fc44", "arch": "aarch64" }, { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "7.fc44", "arch": "aarch64" } ] } RPMResults finished