Warning: Permanently added '13.221.255.227' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11046562-fedora-44-x86_64 --chroot fedora-44-x86_64 Version: 1.10 PID: 11872 Logging PID: 11874 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11046562, 'buildroot_pkgs': [], 'chroot': 'fedora-44-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-5', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-44-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '11046562-fedora-44-x86_64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3'... Running: git checkout d5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c -- cmd: ['git', 'checkout', 'd5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3 rc: 0 stdout: stderr: Note: switching to 'd5ce74a15a18cd1e4b0f9b6a208d0b047a4f735c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d5ce74a automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading eigen-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o eigen-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/eigen-3.4.0.tar.gz/md5/4c527a9171d71a72a9d4186e65bea559/eigen-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2.57M 100 2.57M 0 0 95.51M 0 0 INFO: Reading stdout from command: md5sum eigen-3.4.0.tar.gz INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3.86M 100 3.86M 0 0 154.7M 0 0 INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790633980.019478 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.8 starting (python version = 3.14.5, NVR = mock-6.8-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790633980.019478 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3/mrtrix3.spec) Config(fedora-44-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.8 INFO: Mock Version: 6.8 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-bootstrap-1790633980.019478/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:44 INFO: Pulling image: registry.fedoraproject.org/fedora:44 INFO: Tagging container image as mock-bootstrap-a7471a0c-3482-4057-a661-8ee50791f9fb INFO: Checking that 7a28ae28b2bd1c1c30f163d5d8a264c3923978c7d7dec32f7b168ce5e2f19812 image matches host's architecture INFO: Copy content of container 7a28ae28b2bd1c1c30f163d5d8a264c3923978c7d7dec32f7b168ce5e2f19812 to /var/lib/mock/fedora-44-x86_64-bootstrap-1790633980.019478/root INFO: mounting 7a28ae28b2bd1c1c30f163d5d8a264c3923978c7d7dec32f7b168ce5e2f19812 with podman image mount INFO: image 7a28ae28b2bd1c1c30f163d5d8a264c3923978c7d7dec32f7b168ce5e2f19812 as /var/lib/containers/storage/overlay/9bac9960d81ca6883992ce477943280521889002f2fc3407f37d4050c33539d8/merged INFO: umounting image 7a28ae28b2bd1c1c30f163d5d8a264c3923978c7d7dec32f7b168ce5e2f19812 (/var/lib/containers/storage/overlay/9bac9960d81ca6883992ce477943280521889002f2fc3407f37d4050c33539d8/merged) with podman image umount INFO: Removing image mock-bootstrap-a7471a0c-3482-4057-a661-8ee50791f9fb INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-1790633980.019478/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.x86_64 rpm-sequoia-1.10.3-1.fc44.x86_64 dnf5-5.4.6.0-1.fc44.x86_64 dnf5-plugins-5.4.6.0-1.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 53.6 MiB/s | 71.3 MiB | 00m01s Copr repository 100% | 521.8 KiB/s | 625.6 KiB | 00m01s updates 100% | 6.1 MiB/s | 11.8 MiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 0:5.3.9-3.fc44 fedora 8.5 MiB bzip2 x86_64 0:1.0.8-23.fc44 fedora 95.0 KiB coreutils x86_64 0:9.10-5.fc44 updates 5.7 MiB cpio x86_64 0:2.15-9.fc44 fedora 1.1 MiB diffutils x86_64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:44-18 updates 20.6 KiB findutils x86_64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk x86_64 0:5.3.2-3.fc44 fedora 1.8 MiB glibc-minimal-langpack x86_64 0:2.43-8.fc44 updates 0.0 B grep x86_64 0:3.12-3.fc44 fedora 1.0 MiB gzip x86_64 0:1.14-2.fc44 fedora 401.6 KiB info x86_64 0:7.2-9.fc44 fedora 365.6 KiB patch x86_64 0:2.8-4.fc44 fedora 226.6 KiB redhat-rpm-config noarch 0:344-2.fc44 updates 183.7 KiB rpm-build x86_64 0:6.0.2-1.fc44 updates 294.6 KiB sed x86_64 0:4.9-7.fc44 fedora 857.2 KiB shadow-utils x86_64 2:4.19.0-7.fc44 updates 4.0 MiB tar x86_64 2:1.35-9.fc44 updates 3.0 MiB unzip x86_64 0:6.0-69.fc44 fedora 445.8 KiB util-linux x86_64 0:2.41.5-1.fc44 updates 3.5 MiB which x86_64 0:2.25-1.fc44 updates 83.6 KiB xz x86_64 1:5.8.2-2.fc44 fedora 1.3 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc44 updates 3.5 KiB add-determinism x86_64 0:0.7.3-2.fc44 updates 2.2 MiB alternatives x86_64 0:1.33-5.fc44 fedora 62.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs x86_64 0:4.2.1-1.fc44 updates 390.5 KiB binutils x86_64 0:2.46.1-1.fc44 updates 28.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc44 updates 1.2 KiB bzip2-libs x86_64 0:1.0.8-23.fc44 fedora 80.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc44 updates 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-1.fc44 fedora 524.0 B coreutils-common x86_64 0:9.10-5.fc44 updates 10.7 MiB crypto-policies noarch 0:20251128-3.git19878fe.fc44 fedora 132.6 KiB curl x86_64 0:8.18.0-10.fc44 updates 480.0 KiB cyrus-sasl-lib x86_64 0:2.1.28-35.fc44 fedora 2.3 MiB debugedit x86_64 0:5.3-2.fc44 updates 220.8 KiB dwz x86_64 0:0.16-3.fc44 fedora 290.9 KiB ed x86_64 0:1.22.5-2.fc44 fedora 149.7 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils x86_64 0:0.196-1.fc44 updates 3.2 MiB elfutils-debuginfod-client x86_64 0:0.196-1.fc44 updates 83.8 KiB elfutils-default-yama-scope noarch 0:0.196-1.fc44 updates 1.8 KiB elfutils-libelf x86_64 0:0.196-1.fc44 updates 1.4 MiB elfutils-libs x86_64 0:0.196-1.fc44 updates 715.4 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc44 fedora 1.9 KiB fedora-gpg-keys noarch 0:44-2 updates 257.6 KiB fedora-release noarch 0:44-18 updates 0.0 B fedora-release-identity-basic noarch 0:44-18 updates 629.0 B fedora-repos noarch 0:44-2 updates 4.9 KiB file x86_64 0:5.46-10.fc44 updates 100.1 KiB file-libs x86_64 0:5.46-10.fc44 updates 11.9 MiB filesystem x86_64 0:3.18-52.fc44 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-52.fc44 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-2.fc44 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal x86_64 0:17.2-4.fc44 updates 14.2 MiB gdbm-libs x86_64 1:1.23-11.fc44 fedora 129.6 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc x86_64 0:2.43-8.fc44 updates 6.9 MiB glibc-common x86_64 0:2.43-8.fc44 updates 1.0 MiB glibc-gconv-extra x86_64 0:2.43-8.fc44 updates 7.4 MiB gmp x86_64 1:6.3.0-5.fc44 fedora 815.2 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc44 updates 3.5 KiB gnulib-l10n noarch 0:20241231-2.fc44 fedora 655.0 KiB gnupg2 x86_64 0:2.4.9-16.fc44 updates 6.5 MiB gnupg2-dirmngr x86_64 0:2.4.9-16.fc44 updates 634.0 KiB gnupg2-gpg-agent x86_64 0:2.4.9-16.fc44 updates 686.6 KiB gnupg2-gpgconf x86_64 0:2.4.9-16.fc44 updates 249.7 KiB gnupg2-keyboxd x86_64 0:2.4.9-16.fc44 updates 201.2 KiB gnupg2-verify x86_64 0:2.4.9-16.fc44 updates 360.3 KiB gnutls x86_64 0:3.8.13-1.fc44 updates 3.8 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs x86_64 0:1.6.2-8.fc44 fedora 60.6 KiB jansson x86_64 0:2.14-4.fc44 fedora 88.9 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c x86_64 0:0.18-8.fc44 fedora 82.6 KiB kernel-srpm-macros noarch 0:1.0-28.fc44 fedora 1.9 KiB keyutils-libs x86_64 0:1.6.3-7.fc44 fedora 54.2 KiB krb5-libs x86_64 0:1.22.2-4.fc44 updates 2.4 MiB libacl x86_64 0:2.4.0-1.fc44 updates 39.9 KiB libarchive x86_64 0:3.8.7-1.fc44 updates 1.0 MiB libassuan x86_64 0:2.5.7-5.fc44 fedora 163.8 KiB libattr x86_64 0:2.6.0-1.fc44 updates 24.3 KiB libblkid x86_64 0:2.41.5-1.fc44 updates 274.3 KiB libbrotli x86_64 0:1.2.0-3.fc44 fedora 865.0 KiB libcap x86_64 0:2.78-1.fc44 updates 212.1 KiB libcap-ng x86_64 0:0.9.6-1.fc44 updates 68.8 KiB libcbor x86_64 0:0.13.0-2.fc44 fedora 79.5 KiB libcom_err x86_64 0:1.47.3-4.fc44 fedora 63.0 KiB libcurl x86_64 0:8.18.0-10.fc44 updates 1.0 MiB libeconf x86_64 0:0.7.9-3.fc44 fedora 64.8 KiB libevent x86_64 0:2.1.13-1.fc44 updates 980.7 KiB libfdisk x86_64 0:2.41.5-1.fc44 updates 388.3 KiB libffi x86_64 0:3.5.2-2.fc44 fedora 87.7 KiB libfido2 x86_64 0:1.16.0-5.fc44 fedora 246.4 KiB libfsverity x86_64 0:1.6-4.fc44 fedora 28.4 KiB libgcc x86_64 0:16.2.1-2.fc44 updates 270.6 KiB libgcrypt x86_64 0:1.12.2-1.fc44 updates 1.7 MiB libgomp x86_64 0:16.2.1-2.fc44 updates 577.5 KiB libgpg-error x86_64 0:1.58-2.fc44 fedora 941.6 KiB libidn2 x86_64 0:2.3.8-3.fc44 fedora 556.4 KiB libksba x86_64 0:1.6.7-5.fc44 fedora 414.4 KiB liblastlog2 x86_64 0:2.41.5-1.fc44 updates 41.6 KiB libmount x86_64 0:2.41.5-1.fc44 updates 392.6 KiB libnghttp2 x86_64 0:1.68.0-5.fc44 updates 166.1 KiB libnghttp3 x86_64 0:1.18.0-1.fc44 updates 163.4 KiB libpfm x86_64 0:4.13.0-20.fc44 updates 1.7 MiB libpkgconf x86_64 0:2.5.1-1.fc44 fedora 90.1 KiB libpsl x86_64 0:0.21.5-7.fc44 fedora 76.3 KiB libselinux x86_64 0:3.11-2.fc44 updates 205.2 KiB libselinux-utils x86_64 0:3.11-2.fc44 updates 305.8 KiB libsemanage x86_64 0:3.11-1.fc44 updates 316.4 KiB libsepol x86_64 0:3.11-1.fc44 updates 862.1 KiB libsmartcols x86_64 0:2.41.5-1.fc44 updates 188.3 KiB libssh x86_64 0:0.12.2-1.fc44 updates 725.5 KiB libssh-config noarch 0:0.12.2-1.fc44 updates 277.0 B libstdc++ x86_64 0:16.2.1-2.fc44 updates 3.1 MiB libtasn1 x86_64 0:4.21.0-1.fc44 fedora 180.6 KiB libtool-ltdl x86_64 0:2.5.4-10.fc44 fedora 70.0 KiB libunistring x86_64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 x86_64 0:1.0.30-1.fc44 updates 176.0 KiB libuuid x86_64 0:2.41.5-1.fc44 updates 37.2 KiB libverto x86_64 0:0.3.2-12.fc44 fedora 25.3 KiB libxcrypt x86_64 0:4.5.2-3.fc44 fedora 293.2 KiB libxml2 x86_64 0:2.12.10-6.fc44 fedora 1.8 MiB libzstd x86_64 0:1.5.7-5.fc44 fedora 956.1 KiB linkdupes x86_64 0:0.7.3-2.fc44 updates 780.9 KiB lua-libs x86_64 0:5.4.8-5.fc44 fedora 281.7 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs x86_64 0:1.10.0-4.fc44 fedora 157.3 KiB mpfr x86_64 0:4.2.2-3.fc44 fedora 849.1 KiB ncurses-base noarch 0:6.6-1.fc44 fedora 329.7 KiB ncurses-libs x86_64 0:6.6-1.fc44 fedora 968.9 KiB nettle x86_64 0:3.10.1-3.fc44 fedora 794.3 KiB ngtcp2 x86_64 0:1.22.1-1.fc44 updates 338.2 KiB ngtcp2-crypto-ossl x86_64 0:1.22.1-1.fc44 updates 51.6 KiB npth x86_64 0:1.8-4.fc44 fedora 49.5 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap x86_64 0:2.6.14-1.fc44 updates 670.9 KiB openssl-libs x86_64 1:3.5.8-1.fc44 updates 9.2 MiB p11-kit x86_64 0:0.26.5-1.fc44 updates 2.6 MiB p11-kit-trust x86_64 0:0.26.5-1.fc44 updates 478.3 KiB package-notes-srpm-macros noarch 0:0.20-1.fc44 updates 1.6 KiB pam-libs x86_64 0:1.7.2-2.fc44 updates 130.5 KiB pcre2 x86_64 0:10.47-1.fc44.1 fedora 718.6 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf x86_64 0:2.5.1-1.fc44 fedora 92.7 KiB pkgconf-m4 noarch 0:2.5.1-1.fc44 fedora 14.3 KiB pkgconf-pkg-config x86_64 0:2.5.1-1.fc44 fedora 989.0 B policycoreutils x86_64 0:3.11-2.fc44 updates 884.8 KiB popt x86_64 0:1.19-10.fc44 fedora 132.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc44 updates 3.4 KiB python-srpm-macros noarch 0:3.14-12.fc44 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc44 updates 472.0 B readline x86_64 0:8.3-4.fc44 fedora 519.5 KiB rpm x86_64 0:6.0.2-1.fc44 updates 3.1 MiB rpm-build-libs x86_64 0:6.0.2-1.fc44 updates 276.3 KiB rpm-libs x86_64 0:6.0.2-1.fc44 updates 961.2 KiB rpm-plugin-selinux x86_64 0:6.0.2-1.fc44 updates 11.9 KiB rpm-sequoia x86_64 0:1.10.3-1.fc44 updates 2.4 MiB rpm-sign-libs x86_64 0:6.0.2-1.fc44 updates 39.6 KiB rust-srpm-macros noarch 0:28.5-1.fc44 updates 5.5 KiB selinux-policy noarch 0:44.10-1.fc44 updates 32.1 KiB selinux-policy-targeted noarch 0:44.10-1.fc44 updates 18.6 MiB setup noarch 0:2.15.0-28.fc44 fedora 724.9 KiB sqlite-libs x86_64 0:3.51.2-2.fc44 updates 1.6 MiB systemd-libs x86_64 0:259.9-1.fc44 updates 2.4 MiB systemd-standalone-sysusers x86_64 0:259.9-1.fc44 updates 305.7 KiB tpm2-tss x86_64 0:4.1.3-9.fc44 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.2-2.fc44 fedora 8.3 KiB util-linux-core x86_64 0:2.41.5-1.fc44 updates 1.5 MiB xxhash-libs x86_64 0:0.8.3-4.fc44 fedora 94.0 KiB xz-libs x86_64 1:5.8.2-2.fc44 fedora 217.7 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip x86_64 0:3.0-45.fc44 fedora 698.0 KiB zlib-ng-compat x86_64 0:2.3.3-3.fc44 fedora 165.6 KiB zstd x86_64 0:1.5.7-5.fc44 fedora 502.4 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 186 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 227 MiB extra will be used (install 227 MiB, remove 0 B). [ 1/186] bzip2-0:1.0.8-23.fc44.x86_64 100% | 1.8 MiB/s | 52.1 KiB | 00m00s [ 2/186] cpio-0:2.15-9.fc44.x86_64 100% | 6.1 MiB/s | 293.3 KiB | 00m00s [ 3/186] diffutils-0:3.12-5.fc44.x86_6 100% | 13.3 MiB/s | 395.3 KiB | 00m00s [ 4/186] findutils-1:4.10.0-7.fc44.x86 100% | 24.5 MiB/s | 552.5 KiB | 00m00s [ 5/186] bash-0:5.3.9-3.fc44.x86_64 100% | 25.9 MiB/s | 1.9 MiB | 00m00s [ 6/186] grep-0:3.12-3.fc44.x86_64 100% | 18.4 MiB/s | 301.6 KiB | 00m00s [ 7/186] gzip-0:1.14-2.fc44.x86_64 100% | 21.9 MiB/s | 179.1 KiB | 00m00s [ 8/186] info-0:7.2-9.fc44.x86_64 100% | 26.0 MiB/s | 186.7 KiB | 00m00s [ 9/186] patch-0:2.8-4.fc44.x86_64 100% | 16.1 MiB/s | 115.2 KiB | 00m00s [ 10/186] sed-0:4.9-7.fc44.x86_64 100% | 31.2 MiB/s | 319.2 KiB | 00m00s [ 11/186] unzip-0:6.0-69.fc44.x86_64 100% | 27.8 MiB/s | 199.6 KiB | 00m00s [ 12/186] xz-1:5.8.2-2.fc44.x86_64 100% | 45.6 MiB/s | 607.2 KiB | 00m00s [ 13/186] gawk-0:5.3.2-3.fc44.x86_64 100% | 103.2 MiB/s | 1.1 MiB | 00m00s [ 14/186] fedora-release-common-0:44-18 100% | 146.6 KiB/s | 23.6 KiB | 00m00s [ 15/186] glibc-minimal-langpack-0:2.43 100% | 367.2 KiB/s | 83.3 KiB | 00m00s [ 16/186] redhat-rpm-config-0:344-2.fc4 100% | 788.5 KiB/s | 78.1 KiB | 00m00s [ 17/186] rpm-build-0:6.0.2-1.fc44.x86_ 100% | 1.4 MiB/s | 136.8 KiB | 00m00s [ 18/186] coreutils-0:9.10-5.fc44.x86_6 100% | 2.9 MiB/s | 1.2 MiB | 00m00s [ 19/186] shadow-utils-2:4.19.0-7.fc44. 100% | 5.9 MiB/s | 1.3 MiB | 00m00s [ 20/186] util-linux-0:2.41.5-1.fc44.x8 100% | 15.1 MiB/s | 1.2 MiB | 00m00s [ 21/186] tar-2:1.35-9.fc44.x86_64 100% | 5.8 MiB/s | 870.0 KiB | 00m00s [ 22/186] filesystem-0:3.18-52.fc44.x86 100% | 111.2 MiB/s | 1.3 MiB | 00m00s [ 23/186] ncurses-libs-0:6.6-1.fc44.x86 100% | 33.6 MiB/s | 344.1 KiB | 00m00s [ 24/186] bzip2-libs-0:1.0.8-23.fc44.x8 100% | 6.1 MiB/s | 43.8 KiB | 00m00s [ 25/186] pcre2-0:10.47-1.fc44.1.x86_64 100% | 30.1 MiB/s | 277.7 KiB | 00m00s [ 26/186] ed-0:1.22.5-2.fc44.x86_64 100% | 11.9 MiB/s | 85.4 KiB | 00m00s [ 27/186] xz-libs-1:5.8.2-2.fc44.x86_64 100% | 16.3 MiB/s | 116.8 KiB | 00m00s [ 28/186] which-0:2.25-1.fc44.x86_64 100% | 1.1 MiB/s | 42.1 KiB | 00m00s [ 29/186] gmp-1:6.3.0-5.fc44.x86_64 100% | 39.4 MiB/s | 322.5 KiB | 00m00s [ 30/186] mpfr-0:4.2.2-3.fc44.x86_64 100% | 29.1 MiB/s | 357.8 KiB | 00m00s [ 31/186] readline-0:8.3-4.fc44.x86_64 100% | 28.0 MiB/s | 229.8 KiB | 00m00s [ 32/186] ansible-srpm-macros-0:1-20.1. 100% | 2.8 MiB/s | 20.1 KiB | 00m00s [ 33/186] cmake-srpm-macros-0:4.3.0-1.f 100% | 1.5 MiB/s | 10.4 KiB | 00m00s [ 34/186] dwz-0:0.16-3.fc44.x86_64 100% | 19.4 MiB/s | 138.9 KiB | 00m00s [ 35/186] efi-srpm-macros-0:6-6.fc44.no 100% | 3.1 MiB/s | 22.6 KiB | 00m00s [ 36/186] erlang-srpm-macros-0:0.3.11-1 100% | 1.4 MiB/s | 10.0 KiB | 00m00s [ 37/186] filesystem-srpm-macros-0:3.18 100% | 3.7 MiB/s | 26.6 KiB | 00m00s [ 38/186] glibc-common-0:2.43-8.fc44.x8 100% | 7.9 MiB/s | 373.3 KiB | 00m00s [ 39/186] fonts-srpm-macros-1:5.0.0-2.f 100% | 3.8 MiB/s | 27.4 KiB | 00m00s [ 40/186] forge-srpm-macros-0:0.4.0-4.f 100% | 2.8 MiB/s | 20.0 KiB | 00m00s [ 41/186] fpc-srpm-macros-0:1.3-16.fc44 100% | 1.1 MiB/s | 7.9 KiB | 00m00s [ 42/186] gap-srpm-macros-0:2-2.fc44.no 100% | 1.3 MiB/s | 9.1 KiB | 00m00s [ 43/186] coreutils-common-0:9.10-5.fc4 100% | 26.0 MiB/s | 2.1 MiB | 00m00s [ 44/186] ghc-srpm-macros-0:1.10-1.fc44 100% | 1.2 MiB/s | 8.8 KiB | 00m00s [ 45/186] gnat-srpm-macros-0:7-2.fc44.n 100% | 1.2 MiB/s | 8.7 KiB | 00m00s [ 46/186] go-srpm-macros-0:3.8.0-2.fc44 100% | 3.9 MiB/s | 28.2 KiB | 00m00s [ 47/186] kernel-srpm-macros-0:1.0-28.f 100% | 1.5 MiB/s | 9.0 KiB | 00m00s [ 48/186] java-srpm-macros-0:1-8.fc44.n 100% | 1.1 MiB/s | 8.1 KiB | 00m00s [ 49/186] lua-srpm-macros-0:1-17.fc44.n 100% | 1.2 MiB/s | 8.9 KiB | 00m00s [ 50/186] ocaml-srpm-macros-0:11-3.fc44 100% | 1.3 MiB/s | 9.3 KiB | 00m00s [ 51/186] openblas-srpm-macros-0:2-21.f 100% | 1.1 MiB/s | 7.8 KiB | 00m00s [ 52/186] perl-srpm-macros-0:1-61.fc44. 100% | 1.2 MiB/s | 8.4 KiB | 00m00s [ 53/186] qt5-srpm-macros-0:5.15.18-2.f 100% | 1.2 MiB/s | 8.7 KiB | 00m00s [ 54/186] python-srpm-macros-0:3.14-12. 100% | 3.4 MiB/s | 24.0 KiB | 00m00s [ 55/186] tree-sitter-srpm-macros-0:0.4 100% | 1.9 MiB/s | 13.5 KiB | 00m00s [ 56/186] zig-srpm-macros-0:1-8.fc44.no 100% | 1.2 MiB/s | 8.8 KiB | 00m00s [ 57/186] zip-0:3.0-45.fc44.x86_64 100% | 21.5 MiB/s | 264.4 KiB | 00m00s [ 58/186] popt-0:1.19-10.fc44.x86_64 100% | 9.3 MiB/s | 66.9 KiB | 00m00s [ 59/186] zstd-0:1.5.7-5.fc44.x86_64 100% | 23.5 MiB/s | 192.5 KiB | 00m00s [ 60/186] libeconf-0:0.7.9-3.fc44.x86_6 100% | 5.1 MiB/s | 36.2 KiB | 00m00s [ 61/186] libxcrypt-0:4.5.2-3.fc44.x86_ 100% | 16.0 MiB/s | 131.2 KiB | 00m00s [ 62/186] gnome-srpm-macros-0:1.0-1.fc4 100% | 216.5 KiB/s | 8.7 KiB | 00m00s [ 63/186] zlib-ng-compat-0:2.3.3-3.fc44 100% | 12.7 MiB/s | 91.1 KiB | 00m00s [ 64/186] rpm-0:6.0.2-1.fc44.x86_64 100% | 11.3 MiB/s | 576.1 KiB | 00m00s [ 65/186] setup-0:2.15.0-28.fc44.noarch 100% | 4.4 MiB/s | 157.2 KiB | 00m00s [ 66/186] ncurses-base-0:6.6-1.fc44.noa 100% | 12.3 MiB/s | 88.0 KiB | 00m00s [ 67/186] pcre2-syntax-0:10.47-1.fc44.1 100% | 20.1 MiB/s | 164.7 KiB | 00m00s [ 68/186] gnulib-l10n-0:20241231-2.fc44 100% | 18.4 MiB/s | 150.3 KiB | 00m00s [ 69/186] libzstd-0:1.5.7-5.fc44.x86_64 100% | 44.5 MiB/s | 364.2 KiB | 00m00s [ 70/186] util-linux-core-0:2.41.5-1.fc 100% | 12.4 MiB/s | 558.1 KiB | 00m00s [ 71/186] rpm-libs-0:6.0.2-1.fc44.x86_6 100% | 7.9 MiB/s | 413.1 KiB | 00m00s [ 72/186] glibc-gconv-extra-0:2.43-8.fc 100% | 31.3 MiB/s | 1.6 MiB | 00m00s [ 73/186] lua-libs-0:5.4.8-5.fc44.x86_6 100% | 14.8 MiB/s | 136.6 KiB | 00m00s [ 74/186] glibc-0:2.43-8.fc44.x86_64 100% | 26.6 MiB/s | 2.4 MiB | 00m00s [ 75/186] ima-evm-utils-libs-0:1.6.2-8. 100% | 4.2 MiB/s | 30.0 KiB | 00m00s [ 76/186] libfsverity-0:1.6-4.fc44.x86_ 100% | 2.7 MiB/s | 19.2 KiB | 00m00s [ 77/186] rpm-sign-libs-0:6.0.2-1.fc44. 100% | 645.9 KiB/s | 25.8 KiB | 00m00s [ 78/186] rpm-build-libs-0:6.0.2-1.fc44 100% | 3.2 MiB/s | 129.7 KiB | 00m00s [ 79/186] tpm2-tss-0:4.1.3-9.fc44.x86_6 100% | 53.8 MiB/s | 440.9 KiB | 00m00s [ 80/186] json-c-0:0.18-8.fc44.x86_64 100% | 5.0 MiB/s | 46.3 KiB | 00m00s [ 81/186] libuuid-0:2.41.5-1.fc44.x86_6 100% | 712.2 KiB/s | 27.1 KiB | 00m00s [ 82/186] libblkid-0:2.41.5-1.fc44.x86_ 100% | 3.2 MiB/s | 129.8 KiB | 00m00s [ 83/186] libmount-0:2.41.5-1.fc44.x86_ 100% | 3.7 MiB/s | 172.4 KiB | 00m00s [ 84/186] libselinux-0:3.11-2.fc44.x86_ 100% | 2.7 MiB/s | 104.3 KiB | 00m00s [ 85/186] libgcc-0:16.2.1-2.fc44.x86_64 100% | 3.3 MiB/s | 136.3 KiB | 00m00s [ 86/186] libsepol-0:3.11-1.fc44.x86_64 100% | 7.3 MiB/s | 365.3 KiB | 00m00s [ 87/186] libsmartcols-0:2.41.5-1.fc44. 100% | 2.2 MiB/s | 87.4 KiB | 00m00s [ 88/186] systemd-libs-0:259.9-1.fc44.x 100% | 18.4 MiB/s | 868.8 KiB | 00m00s [ 89/186] audit-libs-0:4.2.1-1.fc44.x86 100% | 3.3 MiB/s | 143.6 KiB | 00m00s [ 90/186] libcap-ng-0:0.9.6-1.fc44.x86_ 100% | 891.5 KiB/s | 34.8 KiB | 00m00s [ 91/186] libfdisk-0:2.41.5-1.fc44.x86_ 100% | 4.0 MiB/s 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100% | 9.2 MiB/s | 397.7 KiB | 00m00s [118/186] alternatives-0:1.33-5.fc44.x8 100% | 5.7 MiB/s | 40.8 KiB | 00m00s [119/186] jansson-0:2.14-4.fc44.x86_64 100% | 6.6 MiB/s | 47.1 KiB | 00m00s [120/186] debugedit-0:5.3-2.fc44.x86_64 100% | 2.1 MiB/s | 87.8 KiB | 00m00s [121/186] libxml2-0:2.12.10-6.fc44.x86_ 100% | 70.8 MiB/s | 724.6 KiB | 00m00s [122/186] lz4-libs-0:1.10.0-4.fc44.x86_ 100% | 10.8 MiB/s | 77.7 KiB | 00m00s [123/186] libarchive-0:3.8.7-1.fc44.x86 100% | 7.9 MiB/s | 442.4 KiB | 00m00s [124/186] pkgconf-pkg-config-0:2.5.1-1. 100% | 1.3 MiB/s | 9.5 KiB | 00m00s [125/186] binutils-0:2.46.1-1.fc44.x86_ 100% | 70.2 MiB/s | 6.2 MiB | 00m00s [126/186] pkgconf-0:2.5.1-1.fc44.x86_64 100% | 4.0 MiB/s | 48.7 KiB | 00m00s [127/186] pkgconf-m4-0:2.5.1-1.fc44.noa 100% | 1.9 MiB/s | 13.8 KiB | 00m00s [128/186] libpkgconf-0:2.5.1-1.fc44.x86 100% | 6.0 MiB/s | 42.7 KiB | 00m00s [129/186] R-srpm-macros-0:1.3.7-2.fc44. 100% | 288.5 KiB/s | 11.0 KiB | 00m00s [130/186] curl-0:8.18.0-10.fc44.x86_64 100% | 5.7 MiB/s | 240.2 KiB | 00m00s [131/186] build-reproducibility-srpm-ma 100% | 333.7 KiB/s | 13.3 KiB | 00m00s [132/186] add-determinism-0:0.7.3-2.fc4 100% | 19.9 MiB/s | 854.6 KiB | 00m00s [133/186] linkdupes-0:0.7.3-2.fc44.x86_ 100% | 8.0 MiB/s | 344.8 KiB | 00m00s [134/186] package-notes-srpm-macros-0:0 100% | 259.2 KiB/s | 10.4 KiB | 00m00s [135/186] pyproject-srpm-macros-0:1.23. 100% | 408.5 KiB/s | 15.5 KiB | 00m00s [136/186] qt6-srpm-macros-0:6.11.2-1.fc 100% | 227.0 KiB/s | 9.1 KiB | 00m00s [137/186] rust-srpm-macros-0:28.5-1.fc4 100% | 279.9 KiB/s | 11.2 KiB | 00m00s [138/186] crypto-policies-0:20251128-3. 100% | 7.4 MiB/s | 98.3 KiB | 00m00s [139/186] libidn2-0:2.3.8-3.fc44.x86_64 100% | 24.5 MiB/s | 175.6 KiB | 00m00s [140/186] libtasn1-0:4.21.0-1.fc44.x86_ 100% | 10.6 MiB/s | 76.0 KiB | 00m00s [141/186] libgcrypt-0:1.12.2-1.fc44.x86 100% | 15.0 MiB/s | 629.8 KiB | 00m00s [142/186] libunistring-0:1.1-11.fc44.x8 100% | 59.4 MiB/s | 547.8 KiB | 00m00s [143/186] nettle-0:3.10.1-3.fc44.x86_64 100% | 41.8 MiB/s | 428.0 KiB | 00m00s [144/186] gnutls-0:3.8.13-1.fc44.x86_64 100% | 28.5 MiB/s | 1.4 MiB | 00m00s [145/186] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 78.2 MiB/s | 800.7 KiB | 00m00s [146/186] libtool-ltdl-0:2.5.4-10.fc44. 100% | 4.0 MiB/s | 37.0 KiB | 00m00s [147/186] gdbm-libs-1:1.23-11.fc44.x86_ 100% | 8.2 MiB/s | 58.8 KiB | 00m00s [148/186] openldap-0:2.6.14-1.fc44.x86_ 100% | 6.8 MiB/s | 271.5 KiB | 00m00s [149/186] fedora-repos-0:44-2.noarch 100% | 227.1 KiB/s | 9.1 KiB | 00m00s [150/186] fedora-gpg-keys-0:44-2.noarch 100% | 4.2 MiB/s | 187.6 KiB | 00m00s [151/186] elfutils-default-yama-scope-0 100% | 298.7 KiB/s | 11.3 KiB | 00m00s [152/186] libpfm-0:4.13.0-20.fc44.x86_6 100% | 5.4 MiB/s | 227.3 KiB | 00m00s [153/186] libattr-0:2.6.0-1.fc44.x86_64 100% | 444.7 KiB/s | 17.8 KiB | 00m00s [154/186] libusb1-0:1.0.30-1.fc44.x86_6 100% | 2.1 MiB/s | 83.4 KiB | 00m00s [155/186] libffi-0:3.5.2-2.fc44.x86_64 100% | 3.0 MiB/s | 42.4 KiB | 00m00s [156/186] libevent-0:2.1.13-1.fc44.x86_ 100% | 6.9 MiB/s | 289.2 KiB | 00m00s [157/186] p11-kit-0:0.26.5-1.fc44.x86_6 100% | 10.3 MiB/s | 560.6 KiB | 00m00s [158/186] p11-kit-trust-0:0.26.5-1.fc44 100% | 3.7 MiB/s | 146.5 KiB | 00m00s [159/186] xxhash-libs-0:0.8.3-4.fc44.x8 100% | 5.8 MiB/s | 41.2 KiB | 00m00s [160/186] systemd-standalone-sysusers-0 100% | 3.7 MiB/s | 151.8 KiB | 00m00s [161/186] fedora-release-0:44-18.noarch 100% | 311.5 KiB/s | 12.5 KiB | 00m00s [162/186] openssl-libs-1:3.5.8-1.fc44.x 100% | 51.8 MiB/s | 2.7 MiB | 00m00s [163/186] fedora-release-identity-basic 100% | 330.6 KiB/s | 13.2 KiB | 00m00s [164/186] libbrotli-0:1.2.0-3.fc44.x86_ 100% | 42.5 MiB/s | 347.8 KiB | 00m00s [165/186] libcurl-0:8.18.0-10.fc44.x86_ 100% | 11.1 MiB/s | 455.7 KiB | 00m00s [166/186] libpsl-0:0.21.5-7.fc44.x86_64 100% | 9.1 MiB/s | 65.3 KiB | 00m00s [167/186] gdb-minimal-0:17.2-4.fc44.x86 100% | 34.6 MiB/s | 4.7 MiB | 00m00s [168/186] libnghttp3-0:1.18.0-1.fc44.x8 100% | 1.8 MiB/s | 75.3 KiB | 00m00s [169/186] libssh-0:0.12.2-1.fc44.x86_64 100% | 7.4 MiB/s | 295.9 KiB | 00m00s [170/186] publicsuffix-list-dafsa-0:202 100% | 8.4 MiB/s | 60.3 KiB | 00m00s [171/186] libfido2-0:1.16.0-5.fc44.x86_ 100% | 14.6 MiB/s | 104.5 KiB | 00m00s [172/186] libcbor-0:0.13.0-2.fc44.x86_6 100% | 5.0 MiB/s | 36.0 KiB | 00m00s [173/186] ngtcp2-0:1.22.1-1.fc44.x86_64 100% | 3.7 MiB/s | 157.4 KiB | 00m00s [174/186] libssh-config-0:0.12.2-1.fc44 100% | 223.5 KiB/s | 8.9 KiB | 00m00s [175/186] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 730.3 KiB/s | 27.8 KiB | 00m00s [176/186] selinux-policy-0:44.10-1.fc44 100% | 660.2 KiB/s | 26.4 KiB | 00m00s [177/186] rpm-plugin-selinux-0:6.0.2-1. 100% | 434.6 KiB/s | 17.0 KiB | 00m00s [178/186] selinux-policy-targeted-0:44. 100% | 74.6 MiB/s | 6.8 MiB | 00m00s [179/186] policycoreutils-0:3.11-2.fc44 100% | 6.2 MiB/s | 259.0 KiB | 00m00s [180/186] libselinux-utils-0:3.11-2.fc4 100% | 3.0 MiB/s | 119.7 KiB | 00m00s [181/186] keyutils-libs-0:1.6.3-7.fc44. 100% | 4.4 MiB/s | 31.5 KiB | 00m00s [182/186] libcom_err-0:1.47.3-4.fc44.x8 100% | 3.8 MiB/s | 27.1 KiB | 00m00s [183/186] libverto-0:0.3.2-12.fc44.x86_ 100% | 2.9 MiB/s | 21.1 KiB | 00m00s [184/186] ca-certificates-0:2026.2.90_v 100% | 19.4 MiB/s | 973.3 KiB | 00m00s [185/186] krb5-libs-0:1.22.2-4.fc44.x86 100% | 17.4 MiB/s | 802.6 KiB | 00m00s [186/186] libnghttp2-0:1.68.0-5.fc44.x8 100% | 2.0 MiB/s | 76.6 KiB | 00m00s -------------------------------------------------------------------------------- [186/186] Total 100% | 32.2 MiB/s | 69.4 MiB | 00m02s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. [ 1/188] Verify package files 100% | 741.0 B/s | 186.0 B | 00m00s [ 2/188] Prepare transaction 100% | 3.9 KiB/s | 186.0 B | 00m00s [ 3/188] Installing libgcc-0:16.2.1-2. 100% | 266.0 MiB/s | 272.3 KiB | 00m00s [ 4/188] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/188] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 6/188] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0 B | 00m00s [ 7/188] Installing fedora-gpg-keys-0: 100% | 57.8 MiB/s | 355.3 KiB | 00m00s [ 8/188] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/188] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 10/188] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/188] Installing setup-0:2.15.0-28. 100% | 54.9 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/188] Installing filesystem-0:3.18- 100% | 3.2 MiB/s | 212.8 KiB | 00m00s [ 13/188] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [ 14/188] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 15/188] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 16/188] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/188] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 18/188] Installing coreutils-common-0 100% | 411.0 MiB/s | 10.7 MiB | 00m00s [ 19/188] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 20/188] Installing ncurses-base-0:6.6 100% | 115.7 MiB/s | 355.3 KiB | 00m00s [ 21/188] Installing bash-0:5.3.9-3.fc4 100% | 302.9 MiB/s | 8.5 MiB | 00m00s [ 22/188] Installing glibc-common-0:2.4 100% | 68.3 MiB/s | 1.0 MiB | 00m00s [ 23/188] Installing glibc-gconv-extra- 100% | 326.1 MiB/s | 7.5 MiB | 00m00s [ 24/188] Installing glibc-0:2.43-8.fc4 100% | 198.2 MiB/s | 6.9 MiB | 00m00s [ 25/188] Installing ncurses-libs-0:6.6 100% | 317.5 MiB/s | 975.4 KiB | 00m00s [ 26/188] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/188] Installing zlib-ng-compat-0:2 100% | 162.6 MiB/s | 166.5 KiB | 00m00s [ 28/188] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.6 KiB | 00m00s [ 29/188] Installing libgpg-error-0:1.5 100% | 66.1 MiB/s | 947.5 KiB | 00m00s [ 30/188] Installing libstdc++-0:16.2.1 100% | 441.3 MiB/s | 3.1 MiB | 00m00s [ 31/188] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB | 00m00s [ 32/188] Installing libgcrypt-0:1.12.2 100% | 414.7 MiB/s | 1.7 MiB | 00m00s [ 33/188] Installing readline-0:8.3-4.f 100% | 254.7 MiB/s | 521.6 KiB | 00m00s [ 34/188] Installing xz-libs-1:5.8.2-2. 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [ 35/188] Installing gmp-1:6.3.0-5.fc44 100% | 399.2 MiB/s | 817.5 KiB | 00m00s [ 36/188] Installing libzstd-0:1.5.7-5. 100% | 467.5 MiB/s | 957.4 KiB | 00m00s [ 37/188] Installing elfutils-libelf-0: 100% | 481.0 MiB/s | 1.4 MiB | 00m00s [ 38/188] Installing libuuid-0:2.41.5-1 100% | 0.0 B/s | 38.3 KiB | 00m00s [ 39/188] Installing libacl-0:2.4.0-1.f 100% | 0.0 B/s | 40.7 KiB | 00m00s [ 40/188] Installing popt-0:1.19-10.fc4 100% | 68.0 MiB/s | 139.3 KiB | 00m00s [ 41/188] Installing systemd-libs-0:259 100% | 408.4 MiB/s | 2.5 MiB | 00m00s [ 42/188] Installing npth-0:1.8-4.fc44. 100% | 0.0 B/s | 50.6 KiB | 00m00s [ 43/188] Installing libblkid-0:2.41.5- 100% | 268.8 MiB/s | 275.3 KiB | 00m00s [ 44/188] Installing libxcrypt-0:4.5.2- 100% | 289.0 MiB/s | 295.9 KiB | 00m00s [ 45/188] Installing libsepol-0:3.11-1. 100% | 421.4 MiB/s | 863.0 KiB | 00m00s [ 46/188] Installing sqlite-libs-0:3.51 100% | 397.6 MiB/s | 1.6 MiB | 00m00s [ 47/188] Installing gnupg2-gpgconf-0:2 100% | 20.5 MiB/s | 251.8 KiB | 00m00s [ 48/188] Installing pcre2-0:10.47-1.fc 100% | 351.6 MiB/s | 720.0 KiB | 00m00s [ 49/188] Installing libselinux-0:3.11- 100% | 201.6 MiB/s | 206.5 KiB | 00m00s [ 50/188] Installing grep-0:3.12-3.fc44 100% | 71.6 MiB/s | 1.0 MiB | 00m00s [ 51/188] Installing sed-0:4.9-7.fc44.x 100% | 65.0 MiB/s | 865.4 KiB | 00m00s [ 52/188] Installing findutils-1:4.10.0 100% | 116.8 MiB/s | 1.9 MiB | 00m00s [ 53/188] Installing json-c-0:0.18-8.fc 100% | 0.0 B/s | 83.9 KiB | 00m00s [ 54/188] Installing libtasn1-0:4.21.0- 100% | 178.2 MiB/s | 182.4 KiB | 00m00s [ 55/188] Installing libunistring-0:1.1 100% | 433.6 MiB/s | 1.7 MiB | 00m00s [ 56/188] Installing libidn2-0:2.3.8-3. 100% | 61.0 MiB/s | 562.6 KiB | 00m00s [ 57/188] Installing crypto-policies-0: 100% | 38.5 MiB/s | 157.7 KiB | 00m00s [ 58/188] Installing xz-1:5.8.2-2.fc44. 100% | 85.6 MiB/s | 1.4 MiB | 00m00s [ 59/188] Installing libmount-0:2.41.5- 100% | 384.5 MiB/s | 393.7 KiB | 00m00s [ 60/188] Installing gnupg2-verify-0:2. 100% | 29.4 MiB/s | 361.7 KiB | 00m00s [ 61/188] Installing dwz-0:0.16-3.fc44. 100% | 25.9 MiB/s | 292.3 KiB | 00m00s [ 62/188] Installing mpfr-0:4.2.2-3.fc4 100% | 276.9 MiB/s | 850.8 KiB | 00m00s [ 63/188] Installing gawk-0:5.3.2-3.fc4 100% | 114.6 MiB/s | 1.8 MiB | 00m00s [ 64/188] Installing libksba-0:1.6.7-5. 100% | 407.1 MiB/s | 416.9 KiB | 00m00s [ 65/188] Installing unzip-0:6.0-69.fc4 100% | 36.6 MiB/s | 449.3 KiB | 00m00s [ 66/188] Installing file-libs-0:5.46-1 100% | 697.9 MiB/s | 11.9 MiB | 00m00s [ 67/188] Installing file-0:5.46-10.fc4 100% | 9.0 MiB/s | 101.6 KiB | 00m00s [ 68/188] Installing diffutils-0:3.12-5 100% | 104.8 MiB/s | 1.6 MiB | 00m00s [ 69/188] Installing libeconf-0:0.7.9-3 100% | 0.0 B/s | 66.4 KiB | 00m00s [ 70/188] Installing lua-libs-0:5.4.8-5 100% | 276.6 MiB/s | 283.2 KiB | 00m00s [ 71/188] Installing libsmartcols-0:2.4 100% | 185.0 MiB/s | 189.5 KiB | 00m00s [ 72/188] Installing libcap-ng-0:0.9.6- 100% | 0.0 B/s | 70.6 KiB | 00m00s [ 73/188] Installing audit-libs-0:4.2.1 100% | 383.9 MiB/s | 393.1 KiB | 00m00s [ 74/188] Installing pam-libs-0:1.7.2-2 100% | 129.6 MiB/s | 132.7 KiB | 00m00s [ 75/188] Installing libcap-0:2.78-1.fc 100% | 17.7 MiB/s | 217.2 KiB | 00m00s [ 76/188] Installing libsemanage-0:3.11 100% | 310.7 MiB/s | 318.2 KiB | 00m00s [ 77/188] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 63.6 KiB | 00m00s [ 78/188] Installing libattr-0:2.6.0-1. 100% | 0.0 B/s | 25.2 KiB | 00m00s [ 79/188] Installing libffi-0:3.5.2-2.f 100% | 87.0 MiB/s | 89.1 KiB | 00m00s [ 80/188] Installing p11-kit-0:0.26.5-1 100% | 146.2 MiB/s | 2.6 MiB | 00m00s [ 81/188] Installing p11-kit-trust-0:0. 100% | 23.4 MiB/s | 480.1 KiB | 00m00s [ 82/188] Installing ngtcp2-0:1.22.1-1. 100% | 331.8 MiB/s | 339.8 KiB | 00m00s [ 83/188] Installing openssl-libs-1:3.5 100% | 399.5 MiB/s | 9.2 MiB | 00m00s [ 84/188] Installing coreutils-0:9.10-5 100% | 178.1 MiB/s | 5.7 MiB | 00m00s [ 85/188] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.5 MiB | 00m01s [ 86/188] Installing gzip-0:1.14-2.fc44 100% | 30.6 MiB/s | 407.1 KiB | 00m00s [ 87/188] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 29.4 KiB | 00m00s [ 88/188] Installing rpm-sequoia-0:1.10 100% | 408.5 MiB/s | 2.5 MiB | 00m00s [ 89/188] Installing libevent-0:2.1.13- 100% | 320.5 MiB/s | 984.4 KiB | 00m00s [ 90/188] Installing ngtcp2-crypto-ossl 100% | 0.0 B/s | 52.5 KiB | 00m00s [ 91/188] Installing liblastlog2-0:2.41 100% | 6.1 MiB/s | 43.7 KiB | 00m00s [ 92/188] Installing util-linux-core-0: 100% | 87.0 MiB/s | 1.5 MiB | 00m00s [ 93/188] Installing zip-0:3.0-45.fc44. 100% | 52.7 MiB/s | 701.9 KiB | 00m00s [ 94/188] Installing gnupg2-keyboxd-0:2 100% | 28.2 MiB/s | 202.4 KiB | 00m00s [ 95/188] Installing libpsl-0:0.21.5-7. 100% | 75.6 MiB/s | 77.4 KiB | 00m00s [ 96/188] Installing tar-2:1.35-9.fc44. 100% | 156.8 MiB/s | 3.0 MiB | 00m00s [ 97/188] Installing linkdupes-0:0.7.3- 100% | 58.8 MiB/s | 782.3 KiB | 00m00s [ 98/188] Installing libselinux-utils-0 100% | 24.1 MiB/s | 320.2 KiB | 00m00s [ 99/188] Installing systemd-standalone 100% | 24.9 MiB/s | 306.4 KiB | 00m00s [100/188] Installing rpm-libs-0:6.0.2-1 100% | 313.4 MiB/s | 962.8 KiB | 00m00s [101/188] Installing libfdisk-0:2.41.5- 100% | 190.1 MiB/s | 389.4 KiB | 00m00s [102/188] Installing util-linux-0:2.41. 100% | 108.6 MiB/s | 3.6 MiB | 00m00s [103/188] Installing policycoreutils-0: 100% | 37.1 MiB/s | 913.0 KiB | 00m00s [104/188] Installing selinux-policy-0:4 100% | 1.6 MiB/s | 34.5 KiB | 00m00s [105/188] Installing selinux-policy-tar 100% | 219.2 MiB/s | 14.9 MiB | 00m00s [106/188] Installing libusb1-0:1.0.30-1 100% | 21.7 MiB/s | 177.7 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/188] Installing tpm2-tss-0:4.1.3-9 100% | 326.6 MiB/s | 1.6 MiB | 00m00s [108/188] Installing ima-evm-utils-libs 100% | 0.0 B/s | 61.9 KiB | 00m00s [109/188] Installing gnupg2-gpg-agent-0 100% | 33.7 MiB/s | 690.5 KiB | 00m00s [110/188] Installing zstd-0:1.5.7-5.fc4 100% | 38.0 MiB/s | 506.0 KiB | 00m00s [111/188] Installing nettle-0:3.10.1-3. 100% | 389.4 MiB/s | 797.4 KiB | 00m00s [112/188] Installing gnutls-0:3.8.13-1. 100% | 384.9 MiB/s | 3.8 MiB | 00m00s [113/188] Installing libxml2-0:2.12.10- 100% | 118.0 MiB/s | 1.8 MiB | 00m00s [114/188] Installing bzip2-0:1.0.8-23.f 100% | 8.8 MiB/s | 99.5 KiB | 00m00s [115/188] Installing add-determinism-0: 100% | 145.5 MiB/s | 2.2 MiB | 00m00s [116/188] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [117/188] Installing cpio-0:2.15-9.fc44 100% | 78.8 MiB/s | 1.1 MiB | 00m00s [118/188] Installing ed-0:1.22.5-2.fc44 100% | 13.5 MiB/s | 152.0 KiB | 00m00s [119/188] Installing patch-0:2.8-4.fc44 100% | 18.6 MiB/s | 228.1 KiB | 00m00s [120/188] Installing libgomp-0:16.2.1-2 100% | 282.6 MiB/s | 578.9 KiB | 00m00s [121/188] Installing jansson-0:2.14-4.f 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [122/188] Installing lz4-libs-0:1.10.0- 100% | 154.6 MiB/s | 158.4 KiB | 00m00s [123/188] Installing libarchive-0:3.8.7 100% | 326.0 MiB/s | 1.0 MiB | 00m00s [124/188] Installing libpkgconf-0:2.5.1 100% | 89.1 MiB/s | 91.3 KiB | 00m00s [125/188] Installing pkgconf-0:2.5.1-1. 100% | 8.5 MiB/s | 95.2 KiB | 00m00s [126/188] Installing pkgconf-pkg-config 100% | 177.3 KiB/s | 1.8 KiB | 00m00s [127/188] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 71.1 KiB | 00m00s [128/188] Installing gdbm-libs-1:1.23-1 100% | 128.3 MiB/s | 131.3 KiB | 00m00s [129/188] Installing cyrus-sasl-lib-0:2 100% | 144.4 MiB/s | 2.3 MiB | 00m00s [130/188] Installing openldap-0:2.6.14- 100% | 329.4 MiB/s | 674.7 KiB | 00m00s [131/188] Installing gnupg2-dirmngr-0:2 100% | 31.1 MiB/s | 636.7 KiB | 00m00s [132/188] Installing gnupg2-0:2.4.9-16. 100% | 240.9 MiB/s | 6.5 MiB | 00m00s [133/188] Installing rpm-sign-libs-0:6. 100% | 0.0 B/s | 40.5 KiB | 00m00s [134/188] Installing gpgverify-0:2.2-4. 100% | 0.0 B/s | 9.4 KiB | 00m00s [135/188] Installing libpfm-0:4.13.0-20 100% | 576.1 MiB/s | 1.7 MiB | 00m00s [136/188] Installing xxhash-libs-0:0.8. 100% | 93.2 MiB/s | 95.4 KiB | 00m00s [137/188] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [138/188] Installing libnghttp3-0:1.18. 100% | 161.0 MiB/s | 164.8 KiB | 00m00s [139/188] Installing libcbor-0:0.13.0-2 100% | 79.0 MiB/s | 80.9 KiB | 00m00s [140/188] Installing libfido2-0:1.16.0- 100% | 242.1 MiB/s | 247.9 KiB | 00m00s [141/188] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.6 KiB | 00m00s [142/188] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.1 KiB | 00m00s [143/188] Installing libverto-0:0.3.2-1 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [144/188] Installing krb5-libs-0:1.22.2 100% | 342.1 MiB/s | 2.4 MiB | 00m00s [145/188] Installing libssh-0:0.12.2-1. 100% | 355.3 MiB/s | 727.6 KiB | 00m00s [146/188] Installing libnghttp2-0:1.68. 100% | 163.3 MiB/s | 167.3 KiB | 00m00s [147/188] Installing libcurl-0:8.18.0-1 100% | 332.7 MiB/s | 1.0 MiB | 00m00s [148/188] Installing curl-0:8.18.0-10.f 100% | 21.4 MiB/s | 482.7 KiB | 00m00s [149/188] Installing rpm-0:6.0.2-1.fc44 100% | 88.0 MiB/s | 2.6 MiB | 00m00s [150/188] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [151/188] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [152/188] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/188] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [154/188] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [155/188] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [156/188] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [157/188] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [158/188] Installing elfutils-libs-0:0. 100% | 233.5 MiB/s | 717.2 KiB | 00m00s [159/188] Installing elfutils-debuginfo 100% | 6.5 MiB/s | 86.2 KiB | 00m00s [160/188] Installing elfutils-0:0.196-1 100% | 166.6 MiB/s | 3.2 MiB | 00m00s [161/188] Installing binutils-0:2.46.1- 100% | 353.2 MiB/s | 28.3 MiB | 00m00s [162/188] Installing gdb-minimal-0:17.2 100% | 307.9 MiB/s | 14.2 MiB | 00m00s [163/188] Installing debugedit-0:5.3-2. 100% | 18.2 MiB/s | 224.0 KiB | 00m00s [164/188] Installing rpm-build-libs-0:6 100% | 270.7 MiB/s | 277.2 KiB | 00m00s [165/188] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [166/188] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [167/188] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [168/188] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [169/188] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/188] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [171/188] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [172/188] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [173/188] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [174/188] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [175/188] Installing ansible-srpm-macro 100% | 8.8 MiB/s | 36.2 KiB | 00m00s [176/188] Installing redhat-rpm-config- 100% | 185.5 MiB/s | 189.9 KiB | 00m00s [177/188] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [178/188] Installing rpm-build-0:6.0.2- 100% | 22.8 MiB/s | 303.5 KiB | 00m00s [179/188] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.5 KiB | 00m00s [180/188] Installing pyproject-srpm-mac 100% | 0.0 B/s | 4.0 KiB | 00m00s [181/188] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [182/188] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [183/188] Installing python-srpm-macros 100% | 0.0 B/s | 52.9 KiB | 00m00s [184/188] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [185/188] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.9 KiB | 00m00s [186/188] Installing which-0:2.25-1.fc4 100% | 7.0 MiB/s | 85.8 KiB | 00m00s [187/188] Installing shadow-utils-2:4.1 100% | 161.1 MiB/s | 4.0 MiB | 00m00s [188/188] Installing info-0:7.2-9.fc44. 100% | 55.8 KiB/s | 366.0 KiB | 00m07s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc44.noarch add-determinism-0.7.3-2.fc44.x86_64 alternatives-1.33-5.fc44.x86_64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.2.1-1.fc44.x86_64 bash-5.3.9-3.fc44.x86_64 binutils-2.46.1-1.fc44.x86_64 build-reproducibility-srpm-macros-0.7.3-2.fc44.noarch bzip2-1.0.8-23.fc44.x86_64 bzip2-libs-1.0.8-23.fc44.x86_64 ca-certificates-2026.2.90_v9.0.317-1.fc44.noarch cmake-srpm-macros-4.3.0-1.fc44.noarch coreutils-9.10-5.fc44.x86_64 coreutils-common-9.10-5.fc44.x86_64 cpio-2.15-9.fc44.x86_64 crypto-policies-20251128-3.git19878fe.fc44.noarch curl-8.18.0-10.fc44.x86_64 cyrus-sasl-lib-2.1.28-35.fc44.x86_64 debugedit-5.3-2.fc44.x86_64 diffutils-3.12-5.fc44.x86_64 dwz-0.16-3.fc44.x86_64 ed-1.22.5-2.fc44.x86_64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.196-1.fc44.x86_64 elfutils-debuginfod-client-0.196-1.fc44.x86_64 elfutils-default-yama-scope-0.196-1.fc44.noarch elfutils-libelf-0.196-1.fc44.x86_64 elfutils-libs-0.196-1.fc44.x86_64 erlang-srpm-macros-0.3.11-1.fc44.noarch fedora-gpg-keys-44-2.noarch fedora-release-44-18.noarch fedora-release-common-44-18.noarch fedora-release-identity-basic-44-18.noarch fedora-repos-44-2.noarch file-5.46-10.fc44.x86_64 file-libs-5.46-10.fc44.x86_64 filesystem-3.18-52.fc44.x86_64 filesystem-srpm-macros-3.18-52.fc44.noarch findutils-4.10.0-7.fc44.x86_64 fonts-srpm-macros-5.0.0-2.fc44.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.3.2-3.fc44.x86_64 gdb-minimal-17.2-4.fc44.x86_64 gdbm-libs-1.23-11.fc44.x86_64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43-8.fc44.x86_64 glibc-common-2.43-8.fc44.x86_64 glibc-gconv-extra-2.43-8.fc44.x86_64 glibc-minimal-langpack-2.43-8.fc44.x86_64 gmp-6.3.0-5.fc44.x86_64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc44.noarch gnulib-l10n-20241231-2.fc44.noarch gnupg2-2.4.9-16.fc44.x86_64 gnupg2-dirmngr-2.4.9-16.fc44.x86_64 gnupg2-gpg-agent-2.4.9-16.fc44.x86_64 gnupg2-gpgconf-2.4.9-16.fc44.x86_64 gnupg2-keyboxd-2.4.9-16.fc44.x86_64 gnupg2-verify-2.4.9-16.fc44.x86_64 gnutls-3.8.13-1.fc44.x86_64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.x86_64 gzip-1.14-2.fc44.x86_64 ima-evm-utils-libs-1.6.2-8.fc44.x86_64 info-7.2-9.fc44.x86_64 jansson-2.14-4.fc44.x86_64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.x86_64 kernel-srpm-macros-1.0-28.fc44.noarch keyutils-libs-1.6.3-7.fc44.x86_64 krb5-libs-1.22.2-4.fc44.x86_64 libacl-2.4.0-1.fc44.x86_64 libarchive-3.8.7-1.fc44.x86_64 libassuan-2.5.7-5.fc44.x86_64 libattr-2.6.0-1.fc44.x86_64 libblkid-2.41.5-1.fc44.x86_64 libbrotli-1.2.0-3.fc44.x86_64 libcap-2.78-1.fc44.x86_64 libcap-ng-0.9.6-1.fc44.x86_64 libcbor-0.13.0-2.fc44.x86_64 libcom_err-1.47.3-4.fc44.x86_64 libcurl-8.18.0-10.fc44.x86_64 libeconf-0.7.9-3.fc44.x86_64 libevent-2.1.13-1.fc44.x86_64 libfdisk-2.41.5-1.fc44.x86_64 libffi-3.5.2-2.fc44.x86_64 libfido2-1.16.0-5.fc44.x86_64 libfsverity-1.6-4.fc44.x86_64 libgcc-16.2.1-2.fc44.x86_64 libgcrypt-1.12.2-1.fc44.x86_64 libgomp-16.2.1-2.fc44.x86_64 libgpg-error-1.58-2.fc44.x86_64 libidn2-2.3.8-3.fc44.x86_64 libksba-1.6.7-5.fc44.x86_64 liblastlog2-2.41.5-1.fc44.x86_64 libmount-2.41.5-1.fc44.x86_64 libnghttp2-1.68.0-5.fc44.x86_64 libnghttp3-1.18.0-1.fc44.x86_64 libpfm-4.13.0-20.fc44.x86_64 libpkgconf-2.5.1-1.fc44.x86_64 libpsl-0.21.5-7.fc44.x86_64 libselinux-3.11-2.fc44.x86_64 libselinux-utils-3.11-2.fc44.x86_64 libsemanage-3.11-1.fc44.x86_64 libsepol-3.11-1.fc44.x86_64 libsmartcols-2.41.5-1.fc44.x86_64 libssh-0.12.2-1.fc44.x86_64 libssh-config-0.12.2-1.fc44.noarch libstdc++-16.2.1-2.fc44.x86_64 libtasn1-4.21.0-1.fc44.x86_64 libtool-ltdl-2.5.4-10.fc44.x86_64 libunistring-1.1-11.fc44.x86_64 libusb1-1.0.30-1.fc44.x86_64 libuuid-2.41.5-1.fc44.x86_64 libverto-0.3.2-12.fc44.x86_64 libxcrypt-4.5.2-3.fc44.x86_64 libxml2-2.12.10-6.fc44.x86_64 libzstd-1.5.7-5.fc44.x86_64 linkdupes-0.7.3-2.fc44.x86_64 lua-libs-5.4.8-5.fc44.x86_64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.x86_64 mpfr-4.2.2-3.fc44.x86_64 ncurses-base-6.6-1.fc44.noarch ncurses-libs-6.6-1.fc44.x86_64 nettle-3.10.1-3.fc44.x86_64 ngtcp2-1.22.1-1.fc44.x86_64 ngtcp2-crypto-ossl-1.22.1-1.fc44.x86_64 npth-1.8-4.fc44.x86_64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.14-1.fc44.x86_64 openssl-libs-3.5.8-1.fc44.x86_64 p11-kit-0.26.5-1.fc44.x86_64 p11-kit-trust-0.26.5-1.fc44.x86_64 package-notes-srpm-macros-0.20-1.fc44.noarch pam-libs-1.7.2-2.fc44.x86_64 patch-2.8-4.fc44.x86_64 pcre2-10.47-1.fc44.1.x86_64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc44.x86_64 pkgconf-m4-2.5.1-1.fc44.noarch pkgconf-pkg-config-2.5.1-1.fc44.x86_64 policycoreutils-3.11-2.fc44.x86_64 popt-1.19-10.fc44.x86_64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.23.2-1.fc44.noarch python-srpm-macros-3.14-12.fc44.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.2-1.fc44.noarch readline-8.3-4.fc44.x86_64 redhat-rpm-config-344-2.fc44.noarch rpm-6.0.2-1.fc44.x86_64 rpm-build-6.0.2-1.fc44.x86_64 rpm-build-libs-6.0.2-1.fc44.x86_64 rpm-libs-6.0.2-1.fc44.x86_64 rpm-plugin-selinux-6.0.2-1.fc44.x86_64 rpm-sequoia-1.10.3-1.fc44.x86_64 rpm-sign-libs-6.0.2-1.fc44.x86_64 rust-srpm-macros-28.5-1.fc44.noarch sed-4.9-7.fc44.x86_64 selinux-policy-44.10-1.fc44.noarch selinux-policy-targeted-44.10-1.fc44.noarch setup-2.15.0-28.fc44.noarch shadow-utils-4.19.0-7.fc44.x86_64 sqlite-libs-3.51.2-2.fc44.x86_64 systemd-libs-259.9-1.fc44.x86_64 systemd-standalone-sysusers-259.9-1.fc44.x86_64 tar-1.35-9.fc44.x86_64 tpm2-tss-4.1.3-9.fc44.x86_64 tree-sitter-srpm-macros-0.4.2-2.fc44.noarch unzip-6.0-69.fc44.x86_64 util-linux-2.41.5-1.fc44.x86_64 util-linux-core-2.41.5-1.fc44.x86_64 which-2.25-1.fc44.x86_64 xxhash-libs-0.8.3-4.fc44.x86_64 xz-5.8.2-2.fc44.x86_64 xz-libs-5.8.2-2.fc44.x86_64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.x86_64 zlib-ng-compat-2.3.3-3.fc44.x86_64 zstd-1.5.7-5.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790553600 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-5.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-x86_64-1790633980.019478/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-1iap0opt/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 28 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-5.fc44.src.rpm) Config(fedora-44-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-bootstrap-1790633980.019478/root. INFO: reusing tmpfs at /var/lib/mock/fedora-44-x86_64-bootstrap-1790633980.019478/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-1790633980.019478/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.x86_64 rpm-sequoia-1.10.3-1.fc44.x86_64 dnf5-5.4.6.0-1.fc44.x86_64 dnf5-plugins-5.4.6.0-1.fc44.x86_64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-5.fc44.src.rpm Start: build setup for mrtrix3-3.0.8-5.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790553600 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-5.fc44.src.rpm Updating and loading repositories: updates 100% | 265.2 KiB/s | 23.6 KiB | 00m00s fedora 100% | 270.7 KiB/s | 24.1 KiB | 00m00s Copr repository 100% | 95.7 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils x86_64 0:0.28-5.fc44 fedora 218.0 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB fftw-devel x86_64 0:3.3.10-17.fc44 fedora 283.1 KiB gcc-c++ x86_64 0:16.2.1-2.fc44 updates 46.8 MiB git x86_64 0:2.55.0-1.fc44 updates 57.7 KiB libpng-devel x86_64 2:1.6.58-1.fc44 updates 905.9 KiB libtiff-devel x86_64 0:4.7.2-1.fc44 updates 885.0 KiB mesa-libGL-devel x86_64 0:26.2.3-1.fc44 updates 80.8 KiB mesa-libGLU-devel x86_64 0:9.0.3-8.fc44 fedora 17.0 KiB python3 x86_64 0:3.14.7-1.fc44 updates 28.7 KiB python3-devel x86_64 0:3.14.7-1.fc44 updates 2.0 MiB qt5-qtbase-devel x86_64 0:5.15.18-2.fc44 fedora 19.0 MiB qt5-qtsvg-devel x86_64 0:5.15.18-2.fc44 fedora 83.6 KiB zlib-ng-compat-devel x86_64 0:2.3.3-3.fc44 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB annobin-docs noarch 0:13.14-1.fc44 updates 99.3 KiB annobin-plugin-gcc x86_64 0:13.14-1.fc44 updates 699.3 KiB avahi-libs x86_64 0:0.9~rc2-8.fc44 fedora 179.2 KiB cmake x86_64 0:4.3.0-1.fc44 fedora 40.5 MiB cmake-data noarch 0:4.3.0-1.fc44 fedora 9.4 MiB cmake-filesystem x86_64 0:4.3.0-1.fc44 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-1.fc44 fedora 8.4 KiB cpp x86_64 0:16.2.1-2.fc44 updates 42.6 MiB cups-filesystem noarch 1:2.4.19-3.fc44 updates 0.0 B cups-libs x86_64 1:2.4.19-3.fc44 updates 634.6 KiB dbus-libs x86_64 1:1.16.2-1.fc44 fedora 357.4 KiB default-fonts-core-sans noarch 0:4.3-1.fc44 fedora 11.9 KiB double-conversion x86_64 0:3.4.0-3.fc44 fedora 101.8 KiB duktape x86_64 0:2.7.0-11.fc44 fedora 623.6 KiB emacs-filesystem x86_64 1:30.2-2.fc44 fedora 0.0 B expat x86_64 0:2.8.3-1.fc44 updates 334.4 KiB fftw x86_64 0:3.3.10-17.fc44 fedora 181.4 KiB fftw-libs x86_64 0:3.3.10-17.fc44 fedora 0.0 B fftw-libs-double x86_64 0:3.3.10-17.fc44 fedora 3.4 MiB fftw-libs-long x86_64 0:3.3.10-17.fc44 fedora 1.5 MiB fftw-libs-quad x86_64 0:3.3.10-17.fc44 fedora 2.5 MiB fftw-libs-single x86_64 0:3.3.10-17.fc44 fedora 3.6 MiB fontconfig x86_64 0:2.17.0-4.fc44 fedora 776.4 KiB fonts-filesystem noarch 1:5.0.0-2.fc44 fedora 0.0 B freetype x86_64 0:2.14.3-1.fc44 updates 918.3 KiB gcc x86_64 0:16.2.1-2.fc44 updates 121.8 MiB gcc-plugin-annobin x86_64 0:16.2.1-2.fc44 updates 57.2 KiB git-core x86_64 0:2.55.0-1.fc44 updates 25.6 MiB git-core-doc noarch 0:2.55.0-1.fc44 updates 18.9 MiB glib2 x86_64 0:2.88.3-1.fc44 updates 15.3 MiB glibc-devel x86_64 0:2.43-8.fc44 updates 2.3 MiB glx-utils x86_64 0:9.0.0-11.fc44 fedora 418.0 KiB google-noto-fonts-common noarch 0:20251201-2.fc44 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20251201-2.fc44 fedora 1.4 MiB graphite2 x86_64 0:1.3.14-20.fc44 fedora 191.5 KiB groff-base x86_64 0:1.23.0-12.fc44 fedora 3.9 MiB harfbuzz x86_64 0:14.1.0-2.fc44 updates 2.8 MiB hwdata noarch 0:0.411-1.fc44 updates 10.1 MiB jbigkit-libs x86_64 0:2.1-33.fc44 fedora 117.2 KiB jsoncpp x86_64 0:1.9.6-3.fc44 fedora 285.6 KiB kernel-headers x86_64 0:7.2.4-200.fc44 updates 7.0 MiB less x86_64 0:704-4.fc44 updates 479.5 KiB libICE x86_64 0:1.1.2-4.fc44 fedora 198.3 KiB libSM x86_64 0:1.2.5-4.fc44 fedora 100.9 KiB libX11 x86_64 0:1.8.13-1.fc44 fedora 1.3 MiB libX11-common noarch 0:1.8.13-1.fc44 fedora 1.1 MiB libX11-devel x86_64 0:1.8.13-1.fc44 fedora 1.0 MiB libX11-xcb x86_64 0:1.8.13-1.fc44 fedora 10.8 KiB libXau x86_64 0:1.0.12-4.fc44 fedora 72.8 KiB libXau-devel x86_64 0:1.0.12-4.fc44 fedora 7.3 KiB libXext x86_64 0:1.3.6-5.fc44 fedora 89.8 KiB libXxf86vm x86_64 0:1.1.6-4.fc44 fedora 25.1 KiB libatomic x86_64 0:16.2.1-2.fc44 updates 45.6 KiB libdrm x86_64 0:2.4.134-1.fc44 updates 405.8 KiB libdrm-devel x86_64 0:2.4.134-1.fc44 updates 743.6 KiB libedit x86_64 0:3.1-59.20260512cvs.fc44 updates 248.3 KiB libevdev x86_64 0:1.13.7-1.fc44 updates 89.9 KiB libglvnd x86_64 1:1.7.0-9.fc44 fedora 526.5 KiB libglvnd-core-devel x86_64 1:1.7.0-9.fc44 fedora 40.3 KiB libglvnd-devel x86_64 1:1.7.0-9.fc44 fedora 2.1 MiB libglvnd-egl x86_64 1:1.7.0-9.fc44 fedora 68.6 KiB libglvnd-gles x86_64 1:1.7.0-9.fc44 fedora 97.7 KiB libglvnd-glx x86_64 1:1.7.0-9.fc44 fedora 601.0 KiB libglvnd-opengl x86_64 1:1.7.0-9.fc44 fedora 144.7 KiB libgudev x86_64 0:238-9.fc44 fedora 91.7 KiB libicu x86_64 0:77.1-3.fc44 updates 36.6 MiB libinput x86_64 0:1.31.3-1.fc44 updates 701.6 KiB libjpeg-turbo x86_64 0:3.1.3-1.fc44 fedora 818.2 KiB libjpeg-turbo-devel x86_64 0:3.1.3-1.fc44 fedora 353.9 KiB liblerc x86_64 0:4.0.0-10.fc44 fedora 647.9 KiB liblerc-devel x86_64 0:4.0.0-10.fc44 fedora 4.3 MiB libmpc x86_64 0:1.4.1-1.fc44 updates 168.7 KiB libpciaccess x86_64 0:0.16-17.fc44 fedora 48.4 KiB libpciaccess-devel x86_64 0:0.16-17.fc44 fedora 15.3 KiB libpng x86_64 2:1.6.58-1.fc44 updates 249.6 KiB libproxy x86_64 0:0.5.12-2.fc44 fedora 102.1 KiB libquadmath x86_64 0:16.2.1-2.fc44 updates 325.9 KiB libstdc++-devel x86_64 0:16.2.1-2.fc44 updates 41.2 MiB libtiff x86_64 0:4.7.2-1.fc44 updates 640.4 KiB libuv x86_64 1:1.52.1-2.fc44 updates 593.1 KiB libwacom x86_64 0:2.19.0-1.fc44 updates 114.0 KiB libwacom-data noarch 0:2.19.0-1.fc44 updates 1.4 MiB libwayland-client x86_64 0:1.26.0-1.fc44 updates 66.0 KiB libwebp x86_64 0:1.6.0-3.fc44 fedora 968.0 KiB libwebp-devel x86_64 0:1.6.0-3.fc44 fedora 121.7 KiB libxcb x86_64 0:1.17.0-7.fc44 fedora 1.1 MiB libxcb-devel x86_64 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel x86_64 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon x86_64 0:1.13.1-2.fc44 fedora 432.2 KiB libxkbcommon-x11 x86_64 0:1.13.1-2.fc44 fedora 35.4 KiB libxshmfence x86_64 0:1.3.2-8.fc44 fedora 12.3 KiB libzstd-devel x86_64 0:1.5.7-5.fc44 fedora 217.6 KiB llvm-filesystem x86_64 0:22.1.8-4.fc44 updates 0.0 B llvm-libs x86_64 0:22.1.8-4.fc44 updates 140.5 MiB lm_sensors-libs x86_64 0:3.6.0-24.fc44 fedora 85.7 KiB make x86_64 1:4.4.1-12.fc44 fedora 1.8 MiB mesa-dri-drivers x86_64 0:26.2.3-1.fc44 updates 53.2 MiB mesa-filesystem x86_64 0:26.2.3-1.fc44 updates 3.6 KiB mesa-libEGL x86_64 0:26.2.3-1.fc44 updates 398.4 KiB mesa-libGL x86_64 0:26.2.3-1.fc44 updates 374.1 KiB mesa-libGLU x86_64 0:9.0.3-8.fc44 fedora 369.8 KiB mesa-libgbm x86_64 0:26.2.3-1.fc44 updates 19.5 KiB mpdecimal x86_64 0:4.0.1-3.fc44 fedora 217.1 KiB mtdev x86_64 0:1.1.6-12.fc44 fedora 29.1 KiB ncurses x86_64 0:6.6-1.fc44 fedora 611.4 KiB ninja-build x86_64 0:1.13.2-2.fc44 fedora 496.5 KiB openssh x86_64 0:10.2p1-14.fc44 updates 1.4 MiB openssh-clients x86_64 0:10.2p1-14.fc44 updates 2.7 MiB pcre2-utf16 x86_64 0:10.47-1.fc44.1 fedora 655.2 KiB perl-AutoLoader noarch 0:5.74-525.fc44 updates 20.6 KiB perl-B x86_64 0:1.89-525.fc44 updates 501.2 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-525.fc44 updates 25.4 KiB perl-Data-Dumper x86_64 0:2.192-523.fc44 updates 115.5 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 x86_64 0:2.59-521.fc44 fedora 59.6 KiB perl-DynaLoader x86_64 0:1.57-525.fc44 updates 32.1 KiB perl-Encode x86_64 4:3.21-521.fc44 fedora 4.7 MiB perl-English noarch 0:1.11-525.fc44 updates 6.2 KiB perl-Errno x86_64 0:1.38-525.fc44 updates 8.4 KiB perl-Error noarch 1:0.17030-3.fc44 fedora 76.8 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-Fcntl x86_64 0:1.20-525.fc44 updates 48.7 KiB perl-File-Basename noarch 0:2.86-525.fc44 updates 14.0 KiB perl-File-Find noarch 0:1.44-525.fc44 updates 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-525.fc44 updates 12.5 KiB perl-FileHandle noarch 0:2.05-525.fc44 updates 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-525.fc44 updates 11.2 KiB perl-Git noarch 0:2.55.0-1.fc44 updates 64.4 KiB perl-HTTP-Tiny noarch 0:0.096-1.fc44 updates 162.4 KiB perl-IO x86_64 0:1.55-525.fc44 updates 147.3 KiB perl-IO-Socket-IP noarch 0:0.43-522.fc44 fedora 100.3 KiB perl-IO-Socket-SSL noarch 0:2.098-2.fc44 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-525.fc44 updates 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 x86_64 0:3.16-521.fc44 fedora 41.9 KiB perl-Net-SSLeay x86_64 0:1.94-12.fc44 fedora 1.3 MiB perl-POSIX x86_64 0:2.23-525.fc44 updates 229.4 KiB perl-PathTools x86_64 0:3.94-521.fc44 fedora 179.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-4.fc44 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.70-2.fc44 fedora 144.8 KiB perl-SelectSaver noarch 0:1.02-525.fc44 updates 2.2 KiB perl-Socket x86_64 4:2.043-1.fc44 updates 121.8 KiB perl-Storable x86_64 1:3.37-522.fc44 fedora 235.1 KiB perl-Symbol noarch 0:1.09-525.fc44 updates 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-TermReadKey x86_64 0:2.38-27.fc44 fedora 63.9 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9778-521.fc44 fedora 115.6 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.36-1.fc44 updates 275.7 KiB perl-Unicode-Normalize x86_64 0:1.32-521.fc44 fedora 486.0 KiB perl-base noarch 0:2.27-525.fc44 updates 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-if noarch 0:0.61.000-525.fc44 updates 5.8 KiB perl-interpreter x86_64 4:5.42.3-525.fc44 updates 118.8 KiB perl-lib x86_64 0:0.65-525.fc44 updates 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs x86_64 4:5.42.3-525.fc44 updates 11.6 MiB perl-locale noarch 0:1.13-525.fc44 updates 6.1 KiB perl-mro x86_64 0:1.29-525.fc44 updates 41.4 KiB perl-overload noarch 0:1.40-525.fc44 updates 71.6 KiB perl-overloading noarch 0:0.02-525.fc44 updates 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-525.fc44 updates 3.9 KiB pyproject-rpm-macros noarch 0:1.23.2-1.fc44 updates 156.3 KiB python-pip-wheel noarch 0:26.0.1-3.fc44 updates 1.2 MiB python-rpm-macros noarch 0:3.14-12.fc44 fedora 28.0 KiB python3-libs x86_64 0:3.14.7-1.fc44 updates 44.0 MiB python3-packaging noarch 0:25.0-8.fc44 fedora 607.4 KiB python3-rpm-generators noarch 0:14-14.fc44 fedora 81.7 KiB python3-rpm-macros noarch 0:3.14-12.fc44 fedora 6.5 KiB qt-settings noarch 0:44.0-1.fc44 updates 1.1 KiB qt5-filesystem x86_64 0:5.15.18-2.fc44 fedora 0.0 B qt5-qtbase x86_64 0:5.15.18-2.fc44 fedora 9.9 MiB qt5-qtbase-common noarch 0:5.15.18-2.fc44 fedora 78.0 B qt5-qtbase-gui x86_64 0:5.15.18-2.fc44 fedora 20.4 MiB qt5-qtsvg x86_64 0:5.15.18-2.fc44 fedora 627.0 KiB qt5-rpm-macros noarch 0:5.15.18-2.fc44 fedora 1.6 KiB rhash x86_64 0:1.4.5-4.fc44 fedora 354.8 KiB spirv-tools-libs x86_64 0:2026.1-1.fc44 fedora 6.1 MiB tzdata noarch 0:2026c-2.fc44 updates 1.2 MiB vim-filesystem noarch 2:9.2.1129-1.fc44 updates 40.0 B vulkan-headers noarch 0:1.4.341.0-1.fc44 fedora 36.1 MiB vulkan-loader x86_64 0:1.4.341.0-1.fc44 fedora 577.6 KiB vulkan-loader-devel x86_64 0:1.4.341.0-1.fc44 fedora 8.0 KiB xcb-util x86_64 0:0.4.1-9.fc44 fedora 26.1 KiB xcb-util-image x86_64 0:0.4.1-9.fc44 fedora 22.0 KiB xcb-util-keysyms x86_64 0:0.4.1-9.fc44 fedora 16.6 KiB xcb-util-renderutil x86_64 0:0.3.10-9.fc44 fedora 24.2 KiB xcb-util-wm x86_64 0:0.4.2-9.fc44 fedora 81.0 KiB xkeyboard-config noarch 0:2.47-1.fc44 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB Transaction Summary: Installing: 218 packages Total size of inbound packages is 237 MiB. Need to download 237 MiB. After this operation, 858 MiB extra will be used (install 858 MiB, remove 0 B). [ 1/218] desktop-file-utils-0:0.28-5.f 100% | 802.6 KiB/s | 69.8 KiB | 00m00s [ 2/218] fftw-devel-0:3.3.10-17.fc44.x 100% | 1.3 MiB/s | 134.1 KiB | 00m00s [ 3/218] eigen3-devel-0:5.0.1-3.fc44.n 100% | 8.0 MiB/s | 1.3 MiB | 00m00s [ 4/218] git-0:2.55.0-1.fc44.x86_64 100% | 182.0 KiB/s | 41.1 KiB | 00m00s [ 5/218] libpng-devel-2:1.6.58-1.fc44. 100% | 687.4 KiB/s | 303.1 KiB | 00m00s [ 6/218] libtiff-devel-0:4.7.2-1.fc44. 100% | 1.0 MiB/s | 293.1 KiB | 00m00s [ 7/218] mesa-libGLU-devel-0:9.0.3-8.f 100% | 745.6 KiB/s | 11.9 KiB | 00m00s [ 8/218] mesa-libGL-devel-0:26.2.3-1.f 100% | 403.3 KiB/s | 26.2 KiB | 00m00s [ 9/218] python3-0:3.14.7-1.fc44.x86_6 100% | 439.8 KiB/s | 29.0 KiB | 00m00s [ 10/218] qt5-qtbase-devel-0:5.15.18-2. 100% | 32.8 MiB/s | 3.5 MiB | 00m00s [ 11/218] python3-devel-0:3.14.7-1.fc44 100% | 3.0 MiB/s | 438.6 KiB | 00m00s [ 12/218] qt5-qtsvg-devel-0:5.15.18-2.f 100% | 2.0 MiB/s | 31.1 KiB | 00m00s [ 13/218] zlib-ng-compat-devel-0:2.3.3- 100% | 2.7 MiB/s | 38.1 KiB | 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00m00s [193/218] libwacom-0:2.19.0-1.fc44.x86_ 100% | 858.9 KiB/s | 52.4 KiB | 00m00s [194/218] libgudev-0:238-9.fc44.x86_64 100% | 2.5 MiB/s | 35.2 KiB | 00m00s [195/218] libpciaccess-devel-0:0.16-17. 100% | 832.8 KiB/s | 12.5 KiB | 00m00s [196/218] libwacom-data-0:2.19.0-1.fc44 100% | 5.6 MiB/s | 346.9 KiB | 00m00s [197/218] kernel-headers-0:7.2.4-200.fc 100% | 26.9 MiB/s | 1.7 MiB | 00m00s [198/218] less-0:704-4.fc44.x86_64 100% | 3.6 MiB/s | 227.8 KiB | 00m00s [199/218] openssh-clients-0:10.2p1-14.f 100% | 12.3 MiB/s | 779.1 KiB | 00m00s [200/218] openssh-0:10.2p1-14.fc44.x86_ 100% | 5.6 MiB/s | 356.3 KiB | 00m00s [201/218] perl-lib-0:0.65-525.fc44.x86_ 100% | 233.4 KiB/s | 14.2 KiB | 00m00s [202/218] libmpc-0:1.4.1-1.fc44.x86_64 100% | 1.2 MiB/s | 75.5 KiB | 00m00s [203/218] libxcrypt-devel-0:4.5.2-3.fc4 100% | 2.1 MiB/s | 30.0 KiB | 00m00s [204/218] glibc-devel-0:2.43-8.fc44.x86 100% | 9.3 MiB/s | 617.4 KiB | 00m00s [205/218] libatomic-0:16.2.1-2.fc44.x86 100% | 906.7 KiB/s | 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100% | 1.4 MiB/s | 86.7 KiB | 00m00s -------------------------------------------------------------------------------- [218/218] Total 100% | 63.6 MiB/s | 237.5 MiB | 00m04s Running transaction [ 1/220] Verify package files 100% | 272.0 B/s | 218.0 B | 00m01s [ 2/220] Prepare transaction 100% | 1.8 KiB/s | 218.0 B | 00m00s [ 3/220] Installing cmake-filesystem-0 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 4/220] Installing glib2-0:2.88.3-1.f 100% | 325.3 MiB/s | 15.3 MiB | 00m00s [ 5/220] Installing expat-0:2.8.3-1.fc 100% | 27.4 MiB/s | 336.4 KiB | 00m00s [ 6/220] Installing libX11-xcb-0:1.8.1 100% | 0.0 B/s | 11.6 KiB | 00m00s [ 7/220] Installing libglvnd-1:1.7.0-9 100% | 515.4 MiB/s | 527.8 KiB | 00m00s [ 8/220] Installing python-rpm-macros- 100% | 0.0 B/s | 28.9 KiB | 00m00s [ 9/220] Installing libmpc-0:1.4.1-1.f 100% | 166.4 MiB/s | 170.4 KiB | 00m00s [ 10/220] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 11/220] Installing libjpeg-turbo-0:3. 100% | 400.3 MiB/s | 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xkeyboard-config-0 100% | 359.3 MiB/s | 6.5 MiB | 00m00s [167/220] Installing libxkbcommon-0:1.1 100% | 211.9 MiB/s | 433.9 KiB | 00m00s [168/220] Installing libxkbcommon-x11-0 100% | 35.4 MiB/s | 36.3 KiB | 00m00s [169/220] Installing libX11-common-0:1. 100% | 169.3 MiB/s | 1.2 MiB | 00m00s [170/220] Installing libX11-0:1.8.13-1. 100% | 449.3 MiB/s | 1.3 MiB | 00m00s [171/220] Installing libXext-0:1.3.6-5. 100% | 88.9 MiB/s | 91.1 KiB | 00m00s [172/220] Installing mesa-libEGL-0:26.2 100% | 390.0 MiB/s | 399.4 KiB | 00m00s [173/220] Installing libglvnd-egl-1:1.7 100% | 68.6 MiB/s | 70.2 KiB | 00m00s [174/220] Installing libglvnd-gles-1:1. 100% | 96.8 MiB/s | 99.1 KiB | 00m00s [175/220] Installing libXxf86vm-0:1.1.6 100% | 0.0 B/s | 26.4 KiB | 00m00s [176/220] Installing mesa-libGL-0:26.2. 100% | 366.3 MiB/s | 375.1 KiB | 00m00s [177/220] Installing libglvnd-glx-1:1.7 100% | 294.1 MiB/s | 602.4 KiB | 00m00s [178/220] Installing glx-utils-0:9.0.0- 100% | 29.2 MiB/s | 419.2 KiB | 00m00s 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Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790553600 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-5.fc44.src.rpm Updating and loading repositories: updates 100% | 139.7 KiB/s | 23.6 KiB | 00m00s fedora 100% | 142.6 KiB/s | 24.1 KiB | 00m00s Copr repository 100% | 90.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "desktop-file-utils-0.28-5.fc44.x86_64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "fftw-devel-3.3.10-17.fc44.x86_64" is already installed. Package "gcc-c++-16.2.1-2.fc44.x86_64" is already installed. Package "git-2.55.0-1.fc44.x86_64" is already installed. Package "libpng-devel-2:1.6.58-1.fc44.x86_64" is already installed. Package "libtiff-devel-4.7.2-1.fc44.x86_64" is already installed. Package "mesa-libGL-devel-26.2.3-1.fc44.x86_64" is already installed. Package "mesa-libGLU-devel-9.0.3-8.fc44.x86_64" is already installed. Package "python3-3.14.7-1.fc44.x86_64" is already installed. Package "python3-devel-3.14.7-1.fc44.x86_64" is already installed. Package "qt5-qtbase-devel-5.15.18-2.fc44.x86_64" is already installed. Package "qt5-qtsvg-devel-5.15.18-2.fc44.x86_64" is already installed. Package "zlib-ng-compat-devel-2.3.3-3.fc44.x86_64" is already installed. Nothing to do. Finish: build setup for mrtrix3-3.0.8-5.fc44.src.rpm Start: rpmbuild mrtrix3-3.0.8-5.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790553600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.PNUAr6 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.N5O0mQ + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar xf /builddir/build/SOURCES/eigen-3.4.0.tar.gz + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dIIzVL + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + unset ARCH + export NUMBER_OF_PROCESSORS=1 + NUMBER_OF_PROCESSORS=1 + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + export 'EIGEN_CFLAGS=-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + EIGEN_CFLAGS='-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + ./configure MRtrix build type requested: release version Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: Header: 1.6.58; library: 1.6.58 Checking for FFTW library: fftw-3.3.10-sse2-avx-avx2-avx2_128 Checking for Qt moc: /usr/bin/moc-qt5 (version 5.15.18) Checking for Qt qmake: /usr/bin/qmake-qt5 (version 5.15.18) Checking for Qt rcc: /usr/bin/rcc-qt5 (version 5.15.18) Checking for Qt: 5.15.18 writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/548) [CC] tmp/cmd/warpinvert.o ( 2/548) [CC] tmp/core/metadata/bids.o ( 3/548) [CC] tmp/core/file/dicom/quick_scan.o ( 4/548) [CC] tmp/core/formats/mri.o ( 5/548) [CC] tmp/core/image_io/tiff.o ( 6/548) [CC] tmp/core/axes.o ( 7/548) [CC] tmp/core/formats/ram.o ( 8/548) [CC] tmp/core/formats/mgz.o ( 9/548) [CC] tmp/core/image_io/gz.o ( 10/548) [CC] tmp/core/thread.o ( 11/548) [CC] tmp/core/algo/histogram.o ( 12/548) [CC] tmp/core/image_io/fetch_store.o ( 13/548) [CC] tmp/core/formats/mrtrix_gz.o ( 14/548) [CC] tmp/core/metadata/phase_encoding.o ( 15/548) [CC] tmp/core/formats/tiff.o ( 16/548) [CC] tmp/core/datatype.o ( 17/548) [CC] tmp/core/version.o ( 18/548) [CC] tmp/core/file/tiff.o ( 19/548) [CC] tmp/core/file/key_value.o ( 20/548) [CC] tmp/core/math/zstatistic.o ( 21/548) [CC] tmp/core/image_io/default.o ( 22/548) [CC] tmp/core/file/dicom/study.o ( 23/548) [CC] tmp/core/dwi/shells.o ( 24/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 25/548) [CC] tmp/core/dwi/gradient.o ( 26/548) [CC] tmp/core/progressbar.o ( 27/548) [CC] tmp/core/file/dicom/select_cmdline.o ( 28/548) [CC] tmp/core/formats/mgh.o ( 29/548) [CC] tmp/core/mrtrix.o ( 30/548) [CC] tmp/core/math/stats/glm.o ( 31/548) [CC] tmp/core/misc/bitset.o ( 32/548) [CC] tmp/core/math/bessel.o ( 33/548) [CC] tmp/core/file/ofstream.o ( 34/548) [CC] tmp/core/math/erfinv.o ( 35/548) [CC] tmp/core/filter/connected_components.o ( 36/548) [CC] tmp/core/metadata/slice_encoding.o ( 37/548) [CC] tmp/core/image_io/base.o ( 38/548) [CC] tmp/core/math/SH.o ( 39/548) [CC] tmp/core/math/stats/import.o ( 40/548) [CC] tmp/core/image_io/mosaic.o ( 41/548) [CC] tmp/core/exception.o ( 42/548) [CC] tmp/core/app.o ( 43/548) [CC] tmp/core/signal_handler.o ( 44/548) [CC] tmp/core/file/config.o ( 45/548) [CC] tmp/core/file/dicom/tree.o ( 46/548) [CC] tmp/core/header.o ( 47/548) [CC] tmp/core/formats/list.o ( 48/548) [CC] tmp/core/file/mgh.o ( 49/548) [CC] tmp/core/formats/mrtrix.o ( 50/548) [CC] tmp/core/stats.o ( 51/548) [CC] tmp/core/math/stats/shuffle.o ( 52/548) [CC] tmp/core/image_io/scratch.o ( 53/548) [CC] tmp/core/image_io/sparse.o ( 54/548) [CC] tmp/core/file/dicom/element.o ( 55/548) [CC] tmp/core/formats/nifti2_gz.o ( 56/548) [CC] tmp/core/file/png.o ( 57/548) [CC] tmp/core/file/dicom/patient.o ( 58/548) [CC] tmp/core/file/dicom/mapper.o ( 59/548) [CC] tmp/core/formats/nifti1_gz.o ( 60/548) [CC] tmp/core/stride.o ( 61/548) [CC] tmp/core/formats/nifti2.o ( 62/548) [CC] tmp/core/image_io/pipe.o ( 63/548) [CC] tmp/core/file/dicom/image.o ( 64/548) [CC] tmp/core/math/betainc.o ( 65/548) [CC] tmp/core/file/name_parser.o ( 66/548) [CC] tmp/core/image_io/ram.o ( 67/548) [CC] tmp/core/image_io/null.o ( 68/548) [CC] tmp/core/formats/nifti1.o ( 69/548) [CC] tmp/core/file/dicom/dict.o ( 70/548) [CC] tmp/core/formats/png.o ( 71/548) [CC] tmp/core/formats/xds.o ( 72/548) [CC] tmp/core/file/dicom/series.o ( 73/548) [CC] tmp/core/file/nifti_utils.o ( 74/548) [CC] tmp/core/formats/pipe.o ( 75/548) [CC] tmp/core/adapter/reslice.o ( 76/548) [CC] tmp/core/math/stats/fwe.o ( 77/548) [CC] tmp/core/math/average_space.o ( 78/548) [CC] tmp/core/image_io/png.o ( 79/548) [CC] tmp/core/formats/mrtrix_sparse_legacy.o ( 80/548) [CC] tmp/core/file/mmap.o ( 81/548) [CC] tmp/core/formats/par.o ( 82/548) [CC] tmp/core/image_io/variable_scaling.o ( 83/548) [CC] tmp/core/formats/mrtrix_utils.o ( 84/548) [CC] tmp/core/formats/dicom.o ( 85/548) [LD] lib/libmrtrix.so ( 86/548) [CC] tmp/src/exec_version.o ( 87/548) [LB] bin/warpinvert ( 88/548) [CC] tmp/cmd/warpinit.o ( 89/548) [LB] bin/warpinit ( 90/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ ( 91/548) [LB] bin/warpcorrect ( 92/548) [CC] tmp/cmd/warpconvert.o ( 93/548) [LB] bin/warpconvert ( 94/548) [CC] tmp/cmd/warp2metric.o ( 95/548) [LB] bin/warp2metric ( 96/548) [CC] tmp/src/surface/polygon.o ( 97/548) [CC] tmp/src/surface/mesh.o ( 98/548) [CC] tmp/src/surface/scalar.o ( 99/548) [CC] tmp/src/connectome/lut.o (100/548) [CC] tmp/src/surface/freesurfer.o (101/548) [CC] tmp/src/connectome/connectome.o (102/548) [CC] tmp/cmd/voxel2mesh.o (103/548) [LB] bin/voxel2mesh (104/548) [CC] tmp/cmd/voxel2fixel.o (105/548) [LB] bin/voxel2fixel (106/548) [CC] tmp/src/stats/permtest.o (107/548) [CC] tmp/cmd/vectorstats.o (108/548) [LB] bin/vectorstats (109/548) [CC] tmp/src/dwi/tractography/seeding/list.o (110/548) [CC] tmp/src/dwi/tractography/file_base.o (111/548) [CC] tmp/src/dwi/tractography/rng.o (112/548) [CC] tmp/src/dwi/tractography/roi.o (113/548) [CC] tmp/src/dwi/tractography/properties.o (114/548) [CC] tmp/cmd/tsfvalidate.o (115/548) [LB] bin/tsfvalidate (116/548) [CC] tmp/cmd/tsfthreshold.o (117/548) [LB] bin/tsfthreshold (118/548) [CC] tmp/cmd/tsfsmooth.o (119/548) [LB] bin/tsfsmooth (120/548) [CC] tmp/cmd/tsfmult.o (121/548) [LB] bin/tsfmult (122/548) [CC] tmp/cmd/tsfinfo.o (123/548) [LB] bin/tsfinfo (124/548) [CC] tmp/cmd/tsfdivide.o (125/548) [LB] bin/tsfdivide (126/548) [CC] tmp/cmd/transformconvert.o (127/548) [LB] bin/transformconvert (128/548) [CC] tmp/cmd/transformcompose.o (129/548) [LB] bin/transformcompose (130/548) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (131/548) [LB] bin/transformcalc (132/548) [CC] tmp/cmd/tensor2metric.o (133/548) [LB] bin/tensor2metric (134/548) [CC] tmp/cmd/tcktransform.o (135/548) [LB] bin/tcktransform (136/548) [CC] tmp/src/dwi/tractography/weights.o (137/548) [CC] tmp/cmd/tckstats.o (138/548) [LB] bin/tckstats (139/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (140/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (141/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (142/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (143/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (144/548) [CC] tmp/src/dwi/tractography/ACT/act.o (145/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o (146/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (147/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (148/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (149/548) [CC] tmp/src/dwi/directions/mask.o (150/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (151/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (152/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o (153/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (154/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (155/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o (156/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (157/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o (158/548) [CC] tmp/src/dwi/tractography/resampling/arc.o (159/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (160/548) [CC] tmp/src/dwi/directions/set.o (161/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o (162/548) [CC] tmp/src/dwi/directions/predefined.o (163/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (164/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (165/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (166/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (167/548) [CC] tmp/src/dwi/fmls.o (168/548) [LB] bin/tcksift2 (169/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (170/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (171/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (172/548) [LB] bin/tcksift (173/548) [CC] tmp/cmd/tcksample.o (174/548) [LB] bin/tcksample (175/548) [CC] tmp/cmd/tckresample.o (176/548) [LB] bin/tckresample (177/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (178/548) [CC] tmp/src/dwi/tractography/mapping/writer.o (179/548) [CC] tmp/cmd/tckmap.o (180/548) [LB] bin/tckmap (181/548) [CC] tmp/cmd/tckinfo.o (182/548) [LB] bin/tckinfo (183/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (184/548) [CC] tmp/src/dwi/tractography/GT/particle.o (185/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (186/548) [CC] tmp/src/dwi/tractography/GT/gt.o (187/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (188/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (189/548) [CC] tmp/cmd/tckglobal.o (190/548) [LB] bin/tckglobal (191/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (192/548) [CC] tmp/src/dwi/tractography/tracking/method.o (193/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (194/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (195/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o (196/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (197/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2213[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (198/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o (199/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (200/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (201/548) [CC] tmp/src/dwi/tractography/tracking/shared.o (202/548) [CC] tmp/src/dwi/tractography/seeding/basic.o (203/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (204/548) [LB] bin/tckgen (205/548) [CC] tmp/src/dwi/tractography/editing/worker.o (206/548) [CC] tmp/cmd/tckedit.o (207/548) [CC] tmp/src/dwi/tractography/editing/editing.o (208/548) [CC] tmp/src/dwi/tractography/editing/receiver.o (209/548) [LB] bin/tckedit (210/548) [CC] tmp/cmd/tckdfc.o (211/548) [LB] bin/tckdfc (212/548) [CC] tmp/cmd/tckconvert.o (213/548) [LB] bin/tckconvert (214/548) [CC] tmp/cmd/tck2fixel.o (215/548) [LB] bin/tck2fixel (216/548) [CC] tmp/cmd/tck2connectome.o (217/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (218/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o (219/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o (220/548) [LB] bin/tck2connectome (221/548) [CC] tmp/src/gui/opengl/font.o (222/548) [CC] tmp/src/gui/color_button.o (223/548) [CC] tmp/src/gui/shview/render_window.o (224/548) [CC] tmp/cmd/shview.o (225/548) [CC] tmp/src/gui/crosshair.o (226/548) [CC] tmp/src/gui/projection.o (227/548) [CC] tmp/src/gui/dwi/render_frame.o (228/548) [CC] tmp/src/gui/dialog/list.o (229/548) [CC] tmp/src/gui/shapes/halfsphere.o (230/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o (231/548) [CC] tmp/src/gui/dwi/renderer.o (232/548) [CC] tmp/src/gui/opengl/lighting.o (233/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp (234/548) [CC] tmp/src/gui/shview/render_window_moc.o (235/548) [CC] tmp/src/gui/opengl/gl.o (236/548) [CC] tmp/src/gui/lighting_dock.o (237/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (238/548) [CC] tmp/src/gui/dwi/render_frame_moc.o (239/548) [CC] tmp/src/gui/dialog/report_exception.o (240/548) [MOC] tmp/src/gui/color_button_moc.cpp (241/548) [CC] tmp/src/gui/color_button_moc.o (242/548) [CC] tmp/src/gui/dialog/dicom.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (243/548) [RCC] tmp/src/gui/shview/icons.cpp (244/548) [CC] tmp/src/gui/shview/icons.o (245/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp (246/548) [CC] tmp/src/gui/lighting_dock_moc.o (247/548) [CC] tmp/src/gui/opengl/shader.o (248/548) [CC] tmp/src/gui/dialog/file.o (249/548) [CC] tmp/src/gui/shview/file_open.o (250/548) [CC] tmp/src/gui/dialog/dialog.o (251/548) [CC] tmp/src/gui/gui.o (252/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (253/548) [CC] tmp/src/gui/opengl/lighting_moc.o (254/548) [CC] tmp/src/gui/dialog/progress.o (255/548) [LB] bin/shview (256/548) [CC] tmp/cmd/shconv.o (257/548) [LB] bin/shconv (258/548) [CC] tmp/cmd/shbasis.o (259/548) [LB] bin/shbasis (260/548) [CC] tmp/cmd/sh2response.o (261/548) [LB] bin/sh2response (262/548) [CC] tmp/cmd/sh2power.o (263/548) [LB] bin/sh2power (264/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.714[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (265/548) [LB] bin/sh2peaks (266/548) [CC] tmp/src/dwi/directions/file.o (267/548) [CC] tmp/cmd/sh2amp.o (268/548) [LB] bin/sh2amp (269/548) [CC] tmp/cmd/peaks2fixel.o (270/548) [LB] bin/peaks2fixel (271/548) [CC] tmp/cmd/peaks2amp.o (272/548) [LB] bin/peaks2amp (273/548) [CC] tmp/cmd/mtnormalise.o (274/548) [LB] bin/mtnormalise (275/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp (276/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o (277/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (278/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (279/548) [CC] tmp/src/gui/mrview/tool/odf/item.o (280/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (281/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (282/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (283/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (284/548) [CC] tmp/src/gui/dialog/image_properties_moc.o (285/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o (286/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (287/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (288/548) [CC] tmp/src/gui/mrview/mode/base.o (289/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (290/548) [CC] tmp/src/gui/mrview/adjust_button.o (291/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o (292/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (293/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (294/548) [CC] tmp/src/surface/mesh_multi.o (295/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (296/548) [CC] tmp/src/gui/mrview/displayable_moc.o (297/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (298/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (299/548) [CC] tmp/cmd/mrview.o (300/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (301/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (302/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (303/548) [CC] tmp/src/gui/mrview/mode/volume.o (304/548) [CC] tmp/src/gui/mrview/tool/overlay.o (305/548) [CC] tmp/src/gui/mrview/colourbars.o (306/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (307/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o (308/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (309/548) [MOC] tmp/src/gui/mrview/window_moc.cpp (310/548) [CC] tmp/src/gui/mrview/window_moc.o (311/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (312/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (313/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (314/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (315/548) [CC] tmp/src/gui/mrview/spin_box_moc.o (316/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (317/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (318/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o (319/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (320/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o (321/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (322/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o (323/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (324/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (325/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (326/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (327/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o (328/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (329/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (330/548) [CC] tmp/src/gui/shapes/sphere.o (331/548) [CC] tmp/src/gui/mrview/sync/processlock.o (332/548) [CC] tmp/src/colourmap.o (333/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (334/548) [CC] tmp/src/gui/mrview/tool/base.o (335/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (336/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (337/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (338/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o (339/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (340/548) [CC] tmp/src/gui/mrview/displayable.o (341/548) [CC] tmp/src/gui/mrview/file_open.o (342/548) [CC] tmp/src/gui/mrview/tool/transform.o (343/548) [CC] tmp/src/gui/mrview/tool/view.o (344/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (345/548) [CC] tmp/src/gui/mrview/sync/client.o (346/548) [CC] tmp/src/gui/mrview/mode/slice.o (347/548) [CC] tmp/src/gui/mrview/mode/lightbox.o (348/548) [CC] tmp/src/gui/mrview/gui_image.o (349/548) [CC] tmp/src/gui/mrview/tool/odf/model.o (350/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (351/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (352/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (353/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (354/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o (355/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (356/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o (357/548) [CC] tmp/src/gui/mrview/volume.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (358/548) [RCC] tmp/src/gui/mrview/icons.cpp (359/548) [CC] tmp/src/gui/mrview/icons.o (360/548) [CC] tmp/src/gui/dialog/opengl.o (361/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (362/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (363/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (364/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (365/548) [CC] tmp/src/gui/dialog/image_properties.o (366/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (367/548) [CC] tmp/src/gui/shapes/cube.o (368/548) [CC] tmp/src/gui/shapes/cylinder.o (369/548) [CC] tmp/src/gui/mrview/window.o (370/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (371/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (372/548) [CC] tmp/src/gui/mrview/colourmap_button.o (373/548) [CC] tmp/src/gui/cursor.o (374/548) [CC] tmp/src/gui/mrview/combo_box_error.o (375/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (376/548) [CC] tmp/src/gui/mrview/mode/ortho.o (377/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o (378/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (379/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (380/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp (381/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o (382/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (383/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (384/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (385/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (386/548) [CC] tmp/src/gui/mrview/tool/view_moc.o (387/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (388/548) [LB] bin/mrview (389/548) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (390/548) [CC] tmp/src/registration/multi_contrast.o (391/548) [LB] bin/mrtransform (392/548) [CC] tmp/cmd/mrthreshold.o (393/548) [LB] bin/mrthreshold (394/548) [CC] tmp/cmd/mrstats.o (395/548) [LB] bin/mrstats (396/548) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (397/548) [CC] tmp/src/registration/transform/convergence_check.o (398/548) [CC] tmp/src/registration/nonlinear.o (399/548) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (400/548) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrregister.cpp -o tmp/cmd/mrregister.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (401/548) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (402/548) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (403/548) [CC] tmp/src/registration/linear.o (404/548) [LB] bin/mrregister (405/548) [CC] tmp/cmd/mrmetric.o (406/548) [LB] bin/mrmetric (407/548) [CC] tmp/cmd/mrmath.o (408/548) [LB] bin/mrmath (409/548) [CC] tmp/cmd/mrinfo.o (410/548) [LB] bin/mrinfo (411/548) [CC] tmp/cmd/mrhistogram.o (412/548) [LB] bin/mrhistogram (413/548) [CC] tmp/cmd/mrhistmatch.o (414/548) [LB] bin/mrhistmatch (415/548) [CC] tmp/cmd/mrgrid.o (416/548) [LB] bin/mrgrid (417/548) [CC] tmp/cmd/mrfilter.o (418/548) [LB] bin/mrfilter (419/548) [CC] tmp/cmd/mredit.o (420/548) [LB] bin/mredit (421/548) [CC] tmp/cmd/mrdump.o (422/548) [LB] bin/mrdump (423/548) [CC] tmp/cmd/mrdegibbs.o (424/548) [LB] bin/mrdegibbs (425/548) [CC] tmp/cmd/mrconvert.o (426/548) [LB] bin/mrconvert (427/548) [CC] tmp/cmd/mrcolour.o (428/548) [LB] bin/mrcolour (429/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (430/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (431/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (432/548) [LB] bin/mrclusterstats (433/548) [CC] tmp/cmd/mrcheckerboardmask.o (434/548) [LB] bin/mrcheckerboardmask (435/548) [CC] tmp/cmd/mrcentroid.o (436/548) [LB] bin/mrcentroid (437/548) [CC] tmp/cmd/mrcat.o (438/548) [LB] bin/mrcat (439/548) [CC] tmp/cmd/mrcalc.o (440/548) [LB] bin/mrcalc (441/548) [CC] tmp/cmd/mraverageheader.o (442/548) [LB] bin/mraverageheader (443/548) [CC] tmp/src/surface/filter/smooth.o (444/548) [CC] tmp/cmd/meshfilter.o (445/548) [CC] tmp/src/surface/filter/base.o (446/548) [LB] bin/meshfilter (447/548) [CC] tmp/src/surface/filter/vertex_transform.o (448/548) [CC] tmp/cmd/meshconvert.o (449/548) [LB] bin/meshconvert (450/548) [CC] tmp/src/surface/algo/mesh2image.o (451/548) [CC] tmp/cmd/mesh2voxel.o (452/548) [LB] bin/mesh2voxel (453/548) [CC] tmp/cmd/maskfilter.o (454/548) [LB] bin/maskfilter (455/548) [CC] tmp/cmd/maskdump.o (456/548) [LB] bin/maskdump (457/548) [CC] tmp/cmd/labelstats.o (458/548) [LB] bin/labelstats (459/548) [CC] tmp/cmd/labelconvert.o (460/548) [LB] bin/labelconvert (461/548) [CC] tmp/cmd/label2mesh.o (462/548) [LB] bin/label2mesh (463/548) [CC] tmp/cmd/label2colour.o (464/548) [LB] bin/label2colour (465/548) [CC] tmp/cmd/fod2fixel.o (466/548) [LB] bin/fod2fixel (467/548) [CC] tmp/cmd/fod2dec.o (468/548) [LB] bin/fod2dec (469/548) [CC] tmp/cmd/fixelreorient.o (470/548) [LB] bin/fixelreorient (471/548) [CC] tmp/cmd/fixelfilter.o (472/548) [CC] tmp/src/fixel/matrix.o (473/548) [CC] tmp/src/fixel/filter/connect.o (474/548) [CC] tmp/src/fixel/filter/smooth.o (475/548) [CC] tmp/src/stats/cfe.o (476/548) [CC] tmp/src/fixel/index_remapper.o (477/548) [LB] bin/fixelfilter (478/548) [CC] tmp/cmd/fixelcrop.o (479/548) [LB] bin/fixelcrop (480/548) [CC] tmp/cmd/fixelcorrespondence.o (481/548) [LB] bin/fixelcorrespondence (482/548) [CC] tmp/cmd/fixelconvert.o (483/548) [LB] bin/fixelconvert (484/548) [CC] tmp/cmd/fixelconnectivity.o (485/548) [LB] bin/fixelconnectivity (486/548) [CC] tmp/cmd/fixelcfestats.o (487/548) [LB] bin/fixelcfestats (488/548) [CC] tmp/cmd/fixel2voxel.o (489/548) [LB] bin/fixel2voxel (490/548) [CC] tmp/cmd/fixel2tsf.o (491/548) [LB] bin/fixel2tsf (492/548) [CC] tmp/cmd/fixel2sh.o (493/548) [LB] bin/fixel2sh (494/548) [CC] tmp/cmd/fixel2peaks.o (495/548) [LB] bin/fixel2peaks (496/548) [CC] tmp/cmd/dwiextract.o (497/548) [LB] bin/dwiextract (498/548) [CC] tmp/cmd/dwidenoise.o (499/548) [LB] bin/dwidenoise (500/548) [CC] tmp/cmd/dwi2tensor.o (501/548) [LB] bin/dwi2tensor (502/548) [CC] tmp/cmd/dwi2mask.o (503/548) [LB] bin/dwi2mask (504/548) [CC] tmp/cmd/dwi2fod.o (505/548) [CC] tmp/src/dwi/sdeconv/csd.o (506/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o (507/548) [LB] bin/dwi2fod (508/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:580, from /usr/include/c++/16/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (509/548) [LB] bin/dwi2adc (510/548) [CC] tmp/cmd/dirstat.o (511/548) [LB] bin/dirstat (512/548) [CC] tmp/cmd/dirsplit.o (513/548) [LB] bin/dirsplit (514/548) [CC] tmp/cmd/dirorder.o (515/548) [LB] bin/dirorder (516/548) [CC] tmp/cmd/dirmerge.o (517/548) [LB] bin/dirmerge (518/548) [CC] tmp/cmd/dirgen.o (519/548) [LB] bin/dirgen (520/548) [CC] tmp/cmd/dirflip.o (521/548) [LB] bin/dirflip (522/548) [CC] tmp/cmd/dcminfo.o (523/548) [LB] bin/dcminfo (524/548) [CC] tmp/cmd/dcmedit.o (525/548) [LB] bin/dcmedit (526/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (527/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/548) [LB] bin/connectomestats (529/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (530/548) [LB] bin/connectomeedit (531/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (532/548) [CC] tmp/cmd/connectome2tck.o (533/548) [CC] tmp/src/dwi/tractography/connectome/extract.o (534/548) [LB] bin/connectome2tck (535/548) [CC] tmp/cmd/amp2sh.o (536/548) [LB] bin/amp2sh (537/548) [CC] tmp/cmd/amp2response.o (538/548) [LB] bin/amp2response (539/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (540/548) [LB] bin/afdconnectivity (541/548) [CC] tmp/cmd/5ttedit.o (542/548) [LB] bin/5ttedit (543/548) [CC] tmp/cmd/5ttcheck.o (544/548) [LB] bin/5ttcheck (545/548) [CC] tmp/cmd/5tt2vis.o (546/548) [LB] bin/5tt2vis (547/548) [CC] tmp/cmd/5tt2gmwmi.o (548/548) [LB] bin/5tt2gmwmi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DLQurr + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + binary_name=mrview + '[' mrview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + binary_name=shview + '[' shview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + grep -q python + desktop-file-install --dir=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications --set-key=Version --set-value=1.0 --remove-key=Value --set-key=Keywords '--set-value=MRI;diffusion;tractography;DWI;neuroimaging;' --set-key=Categories '--set-value=Science;MedicalSoftware;' mrview.desktop + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/16x16/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/32x32/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/48x48/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/64x64/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/128x128/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/application-x-mrtrix.png + cat + install -Dpm0644 mrtrix3-mime.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/mime/packages/mrtrix3.xml + /usr/bin/find-debuginfo -j1 --strict-build-id -m -i --build-id-seed 3.0.8-5.fc44 --unique-debug-suffix -3.0.8-5.fc44.x86_64 --unique-debug-src-base mrtrix3-3.0.8-5.fc44.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 113 files DWARF-compressing 113 files sepdebugcrcfix: Updated 113 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-5.fc44.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-5.fc44.x86_64/eigen-3.4.0/Eigen/src/Core/util/Meta.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-5.fc44.x86_64/eigen-3.4.0/Eigen/src/Core/util/BlasUtil.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-5.fc44.x86_64/eigen-3.4.0/Eigen/src/Core/arch/SSE/PacketMath.h is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 152 directories and 1394 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr Scanned 151 directories and 1394 files, considered 1264 files, read 73 files, linked 3 files, 0 errors sum of sizes of linked files: 0 bytes Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.MNky0J + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + desktop-file-validate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications/mrview.desktop + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-5.fc44.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ipWc9R + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.hS4ez0 + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: application() application(mrview.desktop) bundled(eigen3) = 3.4.0 libmrtrix.so()(64bit) mimehandler(application/x-image-analyze) mimehandler(application/x-image-mgh) mimehandler(application/x-image-mgz) mimehandler(application/x-mrtrix) mimehandler(application/x-mrtrix-gz) mimehandler(application/x-nifti) mimehandler(application/x-nifti-gz) mrtrix3 = 3.0.8-5.fc44 mrtrix3(x86-64) = 3.0.8-5.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 libGL.so.1()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libc.so.6(GLIBC_ABI_GNU2_TLS)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmrtrix.so()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: mrtrix3-debugsource-3.0.8-5.fc44.x86_64 Provides: mrtrix3-debugsource = 3.0.8-5.fc44 mrtrix3-debugsource(x86-64) = 3.0.8-5.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-5.fc44.x86_64 Provides: debuginfo(build-id) = 0004d2577c4829538363b64ab4fd1394b27c42da debuginfo(build-id) = 037e26ce8c2f99e87fa213cf6db36321b209d0d2 debuginfo(build-id) = 048476fa84cb47e8ca21c6426df94f6a432f1989 debuginfo(build-id) = 050acd082f7031906461aedb1590d2d0ecf88703 debuginfo(build-id) = 051c4201d54b56988df67f2794fa79ef15be7f1a debuginfo(build-id) = 0776328609596e11a114edf8675649421c06be22 debuginfo(build-id) = 0e8a036cc9e1aff5b62658e7766862576f1a4c82 debuginfo(build-id) = 12ded52643f15655092b1a4ddeba65d84b636d07 debuginfo(build-id) = 133bed50b7c1d5fe2c1c480157c509ad86ddef23 debuginfo(build-id) = 1496a54292a110d172d79ff28c84181f17a0e00b debuginfo(build-id) = 154f4367a2d47900e9dbc4159968e7ad984513cb debuginfo(build-id) = 176f1e12f42467b0d3275428d8c71b9107e63c75 debuginfo(build-id) = 177055057f834256cebbdcc8262d72b530f1b638 debuginfo(build-id) = 1b441fd221feebd21a90a797f119097f77ca23b7 debuginfo(build-id) = 1cf83ec1e2e149eba64019955b9f1bcc8c3acd95 debuginfo(build-id) = 1d54fbf04cf970d238f325f56bf431527a6f3d08 debuginfo(build-id) = 23f6dd2fce465b6260b0ae1490191762b5f5b784 debuginfo(build-id) = 24b5607770b67581516abf6f43eaf451c68527f6 debuginfo(build-id) = 24f2e744207fa8155de11115cb70bed403e1f229 debuginfo(build-id) = 25a174de21234749404ed4fa4f205c06c60c347e debuginfo(build-id) = 27997b3efbff2667e31f83e0c9c2f2d84d06d49e debuginfo(build-id) = 27c491827dfc0592964e527a3f70587412c3fbad debuginfo(build-id) = 2947aefbc7d1fabe35d69453c869df0674d795e9 debuginfo(build-id) = 2abf244c02bfa7de166e5d98efebee68717efba3 debuginfo(build-id) = 2acf8801d9a6fe715369562e42d564e582949405 debuginfo(build-id) = 2bffd595ceceea26f326f6542764612259eea704 debuginfo(build-id) = 3496fd03126a18bcb52cd3d17076d4e38ce093f6 debuginfo(build-id) = 3ae550e5521155b3bd591e7371c24cf2b5d331e1 debuginfo(build-id) = 3b03500120ebd9cfa9b9369c11098cb3dd3811e1 debuginfo(build-id) = 3b78955569214c8f7e7f7a4050ccd4280028375e debuginfo(build-id) = 48064181afcafd1b378b95e2771f4180ddf29c79 debuginfo(build-id) = 48dca8aefc2d98286e62be82a63519c0886f35aa debuginfo(build-id) = 4a11a9526af808adc16338e43988775341d01dd6 debuginfo(build-id) = 516e6cb7cc0c2daab5f4597fab87437ee16e830b debuginfo(build-id) = 51f761c526f4b0681210621064a606c459d46bf3 debuginfo(build-id) = 54798079ddd82370d41ebcee158a89061d2dca75 debuginfo(build-id) = 5583fed42e2a92f407ab48d3e2ae0840c29e34af debuginfo(build-id) = 5a736dda7d7c89d52ddf910b3493ec8df2497683 debuginfo(build-id) = 5a98ecade6c999676d22972bca7fc9983ffb5d82 debuginfo(build-id) = 5cd37169a723a8d0f65abfb13ffee4c81fb43877 debuginfo(build-id) = 60a0d2c402fae5769c0f36db6a3ee2501b043b1e debuginfo(build-id) = 6694f5da13784c30a18cfca61358d804a69d03a6 debuginfo(build-id) = 66ae4b375969156d81be8f5c958cda9607ada831 debuginfo(build-id) = 6aac4f1545e46d9f5e09401d333ede3143cb997f debuginfo(build-id) = 709bd5dc943141487ecffab2db8f6cd4875ddacb debuginfo(build-id) = 77e9a669fa2f5f00fba81db88e410ce4a4b79865 debuginfo(build-id) = 790553c9da1542a7b09aa84baa6062614fe7571b debuginfo(build-id) = 7aca319d9d2252f716ad2b7322fd6031aa03cea3 debuginfo(build-id) = 7c4a17aa568403ee3bd57e08d23d582e21a2bdd2 debuginfo(build-id) = 7dc675f25abaab9123e7ac919ef2b1e6aa097549 debuginfo(build-id) = 7f5013bfa3b6b71d16b9548f8db6da62731af40c debuginfo(build-id) = 7f76bf40235825027b545215317980062d254214 debuginfo(build-id) = 7f87321d7bd7516bd8c8be3405ce62b20f6ed2ef debuginfo(build-id) = 827282b133f03618052e7e3130fc73250ea6b508 debuginfo(build-id) = 87e5d33daa79a22708e3964528e947d46151e4e5 debuginfo(build-id) = 88f037a58eb8d6661214e278e78ad4cb93133e23 debuginfo(build-id) = 899b8bc15fe576b935a0ae9dd64bbff91242ff5d debuginfo(build-id) = 8f225960ebbd8aaff8147a915e250d03e248e3d0 debuginfo(build-id) = 9001817e32369b7bc90c572788aee6e05e082e95 debuginfo(build-id) = 901b5e716db4a1008215203388476dc040b28e50 debuginfo(build-id) = 90a51ac85bb59bb2e231793dd7aa5bbf8872227e debuginfo(build-id) = 9228faa2e80f919814315a5c76103483c113f8f8 debuginfo(build-id) = 9251e45888c35bb4fe5042a4a941e8383e753bb9 debuginfo(build-id) = 932196c9274a7f298ba60415fe7366506d834e12 debuginfo(build-id) = 94f57e9574017b4fb044d8d07a7b37ea5e1e0eae debuginfo(build-id) = 9582e48a4516f9809eb73d751abb6a183d32a1d2 debuginfo(build-id) = 9641a932c5cf9b5da0aa8ac8a05cab74cc91fd36 debuginfo(build-id) = 975a28ebf8b41fd5f3c578c26cf35f9c948b67ab debuginfo(build-id) = 9910584d98cd2fef375c693b433242a4060e067f debuginfo(build-id) = 9a5fbd91248cddf79748d7add7e2a3044dddae72 debuginfo(build-id) = 9bead2179496584d2f0c38a9accf9c61b47710fd debuginfo(build-id) = 9ca7c119528abddf81e1fe138ff5386c8142c32c debuginfo(build-id) = 9dabd8ddbc438c056d8292f115be396c52df0344 debuginfo(build-id) = a03955498d30354cd34d8cb131906d6a2937cf0b debuginfo(build-id) = a0620b4baec3ab17d40f815cc30020ba4b591bff debuginfo(build-id) = a33b068d32ad60e11a1bd5e728393f05a4c1a15f debuginfo(build-id) = a667f80ecf43f292f68a3f0d3fb015c237a1f9b0 debuginfo(build-id) = aa0d8c92c5469205c1065cf640cc1e59a441c67a debuginfo(build-id) = ab9b86d58db89ba4ee1489cf999a4d4d997db4e3 debuginfo(build-id) = ae8fe180ce230e162c420e51d468356130985b56 debuginfo(build-id) = af17a7afc88f81e993edb89b21705aae9b671530 debuginfo(build-id) = b2439f51e419f139e3089f73334676307516f72e debuginfo(build-id) = bb89a1fd1d9f94bdd5335cffdcd07db4f4d77e54 debuginfo(build-id) = bbae740f98efff87903881e3e7ee033eb8428560 debuginfo(build-id) = bccde867eb35bd2cd99f7d54279bbaa395029252 debuginfo(build-id) = bf83a6493ae365e59b1de4973647125390ff8343 debuginfo(build-id) = c0a30bc3e363e4b763ab85ebb73f47d1add8c417 debuginfo(build-id) = c1cb58c3bdd673993497297884c2b545fa07be0a debuginfo(build-id) = c35c6f530cdaebc12ff531e727e3ef89d9dcd99b debuginfo(build-id) = c4db41bd9337e8cc08faa98934156818cf8a3db7 debuginfo(build-id) = c5d2d206f949806a3b703960db2747903d394819 debuginfo(build-id) = c5ded58952eaa18315517af5f9d097103f821137 debuginfo(build-id) = c643b94414d02d0ddc189589df7915d77b9cd3bf debuginfo(build-id) = c6d4abb013fc99886227d49e041db8260308d29e debuginfo(build-id) = c6e0a89d81bee6b5f6f6d28e8d991c160b493bcc debuginfo(build-id) = c71ec4dcff9e625ad720e9de9c3d4955551bce48 debuginfo(build-id) = c80d96aea0d09ed9eed51b6728ab9148c11df3a9 debuginfo(build-id) = cbcaea4621690aab94c1c5352cac7db452ec274b debuginfo(build-id) = cf8464a3ae441c520994eb29d46578f938fb7ef9 debuginfo(build-id) = d46bd2118fa9cd19ab06fc23e17cd9692a98c615 debuginfo(build-id) = d69b4fc2b36a68e66db693d8bf7222f5069fb2b7 debuginfo(build-id) = ddfde518eb5d675bd427fd6a0059713753560db0 debuginfo(build-id) = df887a6b5e7b08e1cb9ece6dcbe144bd2d4e386c debuginfo(build-id) = dfcddb2917ef041f970bfa032c54cf0b7ac73dca debuginfo(build-id) = e4671c269fe152e3e16975aff2a127d7ef8831fd debuginfo(build-id) = e60e0cf59ab7ef94fec7eb16c8adc4af6f808ec1 debuginfo(build-id) = e638b62f874d9faf8170b09aea8eeccfa0b9609b debuginfo(build-id) = e79b02053435386f18155cf9352c9f4211a8940f debuginfo(build-id) = e7b6388eb209341709945b55817c266424604827 debuginfo(build-id) = ef9bee549c4ab7076c5f9989dda924908b5c441f debuginfo(build-id) = efc008a98b67b7333e392929663e2e7ae9feea2d debuginfo(build-id) = f27b1878bb944e25ef6718fc7fe274251772e53c debuginfo(build-id) = f3cea447412ac1ca4794da20a92451b0b97d7a2a libmrtrix.so-3.0.8-5.fc44.x86_64.debug()(64bit) mrtrix3-debuginfo = 3.0.8-5.fc44 mrtrix3-debuginfo(x86-64) = 3.0.8-5.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(x86-64) = 3.0.8-5.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-5.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-5.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-5.fc44.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.M6qEwe + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + test -d /builddir/build/BUILD/mrtrix3-3.0.8-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-5.fc44.src.rpm Finish: build phase for mrtrix3-3.0.8-5.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-x86_64-1790633980.019478/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-5.fc44.src.rpm) Config(child) 73 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "x86_64" }, { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "x86_64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "x86_64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "5.fc44", "arch": "src" } ] } RPMResults finished