Warning: Permanently added '98.93.183.184' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11073774-fedora-44-x86_64 --chroot fedora-44-x86_64 Version: 1.10 PID: 11905 Logging PID: 11907 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11073774, 'buildroot_pkgs': [], 'chroot': 'fedora-44-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7fba88cb45c83b4ae05da216355c64e81c84f5a9', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-8', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-44-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '11073774-fedora-44-x86_64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3'... Running: git checkout 7fba88cb45c83b4ae05da216355c64e81c84f5a9 -- cmd: ['git', 'checkout', '7fba88cb45c83b4ae05da216355c64e81c84f5a9', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3 rc: 0 stdout: stderr: Note: switching to '7fba88cb45c83b4ae05da216355c64e81c84f5a9'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7fba88c automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading eigen-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o eigen-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/eigen-3.4.0.tar.gz/md5/4c527a9171d71a72a9d4186e65bea559/eigen-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2.57M 100 2.57M 0 0 25.35M 0 0 INFO: Reading stdout from command: md5sum eigen-3.4.0.tar.gz INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3.86M 100 3.86M 0 0 24.43M 0 0 INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791127685.745074 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791127685.745074 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3/mrtrix3.spec) Config(fedora-44-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-bootstrap-1791127685.745074/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:44 INFO: Pulling image: registry.fedoraproject.org/fedora:44 INFO: Tagging container image as mock-bootstrap-0abd141b-171a-4d28-b8b9-a1e4c441d443 INFO: Checking that bdc8554ed5c9fc8b772c1f6756918e83672745c76512e38efdffce366effdff8 image matches host's architecture INFO: Copy content of container bdc8554ed5c9fc8b772c1f6756918e83672745c76512e38efdffce366effdff8 to /var/lib/mock/fedora-44-x86_64-bootstrap-1791127685.745074/root INFO: mounting bdc8554ed5c9fc8b772c1f6756918e83672745c76512e38efdffce366effdff8 with podman image mount INFO: image bdc8554ed5c9fc8b772c1f6756918e83672745c76512e38efdffce366effdff8 as /var/lib/containers/storage/overlay/c3160321f2f414de6598e612cabd38bbe0abecd611bc97ef8624d74cb7f33c80/merged INFO: umounting image bdc8554ed5c9fc8b772c1f6756918e83672745c76512e38efdffce366effdff8 (/var/lib/containers/storage/overlay/c3160321f2f414de6598e612cabd38bbe0abecd611bc97ef8624d74cb7f33c80/merged) with podman image umount INFO: Removing image mock-bootstrap-0abd141b-171a-4d28-b8b9-a1e4c441d443 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-1791127685.745074/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.x86_64 rpm-sequoia-1.10.3-1.fc44.x86_64 dnf5-5.4.6.0-1.fc44.x86_64 dnf5-plugins-5.4.6.0-1.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 14.7 MiB/s | 12.6 MiB | 00m01s Copr repository 100% | 822.5 KiB/s | 611.1 KiB | 00m01s fedora 100% | 29.9 MiB/s | 41.9 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 0:5.3.9-3.fc44 fedora 8.5 MiB bzip2 x86_64 0:1.0.8-23.fc44 fedora 95.0 KiB coreutils x86_64 0:9.10-5.fc44 updates 5.7 MiB cpio x86_64 0:2.15-9.fc44 fedora 1.1 MiB diffutils x86_64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:44-18 updates 20.6 KiB findutils x86_64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk x86_64 0:5.3.2-3.fc44 fedora 1.8 MiB glibc-minimal-langpack x86_64 0:2.43-9.fc44 updates 0.0 B grep x86_64 0:3.12-3.fc44 fedora 1.0 MiB gzip x86_64 0:1.14-2.fc44 fedora 401.6 KiB info x86_64 0:7.2-9.fc44 fedora 365.6 KiB patch x86_64 0:2.8-4.fc44 fedora 226.6 KiB redhat-rpm-config noarch 0:344-2.fc44 updates 183.7 KiB rpm-build x86_64 0:6.0.2-1.fc44 updates 294.6 KiB sed x86_64 0:4.9-7.fc44 fedora 857.2 KiB shadow-utils x86_64 2:4.19.0-7.fc44 updates 4.0 MiB tar x86_64 2:1.35-9.fc44 updates 3.0 MiB unzip x86_64 0:6.0-69.fc44 fedora 445.8 KiB util-linux x86_64 0:2.41.5-1.fc44 updates 3.5 MiB which x86_64 0:2.25-1.fc44 updates 83.6 KiB xz x86_64 1:5.8.2-2.fc44 fedora 1.3 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc44 updates 3.5 KiB add-determinism x86_64 0:0.7.3-2.fc44 updates 2.2 MiB alternatives x86_64 0:1.33-5.fc44 fedora 62.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs x86_64 0:4.2.1-1.fc44 updates 390.5 KiB binutils x86_64 0:2.46.1-1.fc44 updates 28.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc44 updates 1.2 KiB bzip2-libs x86_64 0:1.0.8-23.fc44 fedora 80.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc44 updates 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-1.fc44 fedora 524.0 B coreutils-common x86_64 0:9.10-5.fc44 updates 10.7 MiB crypto-policies noarch 0:20251128-3.git19878fe.fc44 fedora 132.6 KiB curl x86_64 0:8.18.0-10.fc44 updates 480.0 KiB cyrus-sasl-lib x86_64 0:2.1.28-35.fc44 fedora 2.3 MiB debugedit x86_64 0:5.3-2.fc44 updates 220.8 KiB dwz x86_64 0:0.16-3.fc44 fedora 290.9 KiB ed x86_64 0:1.22.5-2.fc44 fedora 149.7 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils x86_64 0:0.196-1.fc44 updates 3.2 MiB elfutils-debuginfod-client x86_64 0:0.196-1.fc44 updates 83.8 KiB elfutils-default-yama-scope noarch 0:0.196-1.fc44 updates 1.8 KiB elfutils-libelf x86_64 0:0.196-1.fc44 updates 1.4 MiB elfutils-libs x86_64 0:0.196-1.fc44 updates 715.4 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc44 fedora 1.9 KiB fedora-gpg-keys noarch 0:44-2 updates 257.6 KiB fedora-release noarch 0:44-18 updates 0.0 B fedora-release-identity-basic noarch 0:44-18 updates 629.0 B fedora-repos noarch 0:44-2 updates 4.9 KiB file x86_64 0:5.46-10.fc44 updates 100.1 KiB file-libs x86_64 0:5.46-10.fc44 updates 11.9 MiB filesystem x86_64 0:3.18-52.fc44 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-52.fc44 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-2.fc44 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal x86_64 0:17.2-4.fc44 updates 14.2 MiB gdbm-libs x86_64 1:1.23-11.fc44 fedora 129.6 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc x86_64 0:2.43-9.fc44 updates 6.9 MiB glibc-common x86_64 0:2.43-9.fc44 updates 1.0 MiB glibc-gconv-extra x86_64 0:2.43-9.fc44 updates 7.4 MiB gmp x86_64 1:6.3.0-5.fc44 fedora 815.2 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc44 updates 3.5 KiB gnulib-l10n noarch 0:20241231-2.fc44 fedora 655.0 KiB gnupg2 x86_64 0:2.4.9-16.fc44 updates 6.5 MiB gnupg2-dirmngr x86_64 0:2.4.9-16.fc44 updates 634.0 KiB gnupg2-gpg-agent x86_64 0:2.4.9-16.fc44 updates 686.6 KiB gnupg2-gpgconf x86_64 0:2.4.9-16.fc44 updates 249.7 KiB gnupg2-keyboxd x86_64 0:2.4.9-16.fc44 updates 201.2 KiB gnupg2-verify x86_64 0:2.4.9-16.fc44 updates 360.3 KiB gnutls x86_64 0:3.8.13-1.fc44 updates 3.8 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs x86_64 0:1.6.2-8.fc44 fedora 60.6 KiB jansson x86_64 0:2.14-4.fc44 fedora 88.9 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c x86_64 0:0.18-8.fc44 fedora 82.6 KiB kernel-srpm-macros noarch 0:1.0-28.fc44 fedora 1.9 KiB keyutils-libs x86_64 0:1.6.3-7.fc44 fedora 54.2 KiB krb5-libs x86_64 0:1.22.2-4.fc44 updates 2.4 MiB libacl x86_64 0:2.4.0-1.fc44 updates 39.9 KiB libarchive x86_64 0:3.8.7-1.fc44 updates 1.0 MiB libassuan x86_64 0:2.5.7-5.fc44 fedora 163.8 KiB libattr x86_64 0:2.6.0-1.fc44 updates 24.3 KiB libblkid x86_64 0:2.41.5-1.fc44 updates 274.3 KiB libbrotli x86_64 0:1.2.0-3.fc44 fedora 865.0 KiB libcap x86_64 0:2.78-1.fc44 updates 212.1 KiB libcap-ng x86_64 0:0.9.6-1.fc44 updates 68.8 KiB libcbor x86_64 0:0.13.0-2.fc44 fedora 79.5 KiB libcom_err x86_64 0:1.47.3-4.fc44 fedora 63.0 KiB libcurl x86_64 0:8.18.0-10.fc44 updates 1.0 MiB libeconf x86_64 0:0.7.9-3.fc44 fedora 64.8 KiB libevent x86_64 0:2.1.13-1.fc44 updates 980.7 KiB libfdisk x86_64 0:2.41.5-1.fc44 updates 388.3 KiB libffi x86_64 0:3.5.2-2.fc44 fedora 87.7 KiB libfido2 x86_64 0:1.16.0-5.fc44 fedora 246.4 KiB libfsverity x86_64 0:1.6-4.fc44 fedora 28.4 KiB libgcc x86_64 0:16.2.1-2.fc44 updates 270.6 KiB libgcrypt x86_64 0:1.12.2-1.fc44 updates 1.7 MiB libgomp x86_64 0:16.2.1-2.fc44 updates 577.5 KiB libgpg-error x86_64 0:1.58-2.fc44 fedora 941.6 KiB libidn2 x86_64 0:2.3.8-3.fc44 fedora 556.4 KiB libksba x86_64 0:1.6.7-5.fc44 fedora 414.4 KiB liblastlog2 x86_64 0:2.41.5-1.fc44 updates 41.6 KiB libmount x86_64 0:2.41.5-1.fc44 updates 392.6 KiB libnghttp2 x86_64 0:1.68.0-5.fc44 updates 166.1 KiB libnghttp3 x86_64 0:1.18.0-1.fc44 updates 163.4 KiB libpfm x86_64 0:4.13.0-20.fc44 updates 1.7 MiB libpkgconf x86_64 0:2.5.1-1.fc44 fedora 90.1 KiB libpsl x86_64 0:0.21.5-7.fc44 fedora 76.3 KiB libselinux x86_64 0:3.11-2.fc44 updates 205.2 KiB libselinux-utils x86_64 0:3.11-2.fc44 updates 305.8 KiB libsemanage x86_64 0:3.11-1.fc44 updates 316.4 KiB libsepol x86_64 0:3.11-1.fc44 updates 862.1 KiB libsmartcols x86_64 0:2.41.5-1.fc44 updates 188.3 KiB libssh x86_64 0:0.12.2-1.fc44 updates 725.5 KiB libssh-config noarch 0:0.12.2-1.fc44 updates 277.0 B libstdc++ x86_64 0:16.2.1-2.fc44 updates 3.1 MiB libtasn1 x86_64 0:4.21.0-1.fc44 fedora 180.6 KiB libtool-ltdl x86_64 0:2.5.4-10.fc44 fedora 70.0 KiB libunistring x86_64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 x86_64 0:1.0.30-1.fc44 updates 176.0 KiB libuuid x86_64 0:2.41.5-1.fc44 updates 37.2 KiB libverto x86_64 0:0.3.2-12.fc44 fedora 25.3 KiB libxcrypt x86_64 0:4.5.2-3.fc44 fedora 293.2 KiB libxml2 x86_64 0:2.12.10-6.fc44 fedora 1.8 MiB libzstd x86_64 0:1.5.7-5.fc44 fedora 956.1 KiB linkdupes x86_64 0:0.7.3-2.fc44 updates 780.9 KiB lua-libs x86_64 0:5.4.8-5.fc44 fedora 281.7 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs x86_64 0:1.10.0-4.fc44 fedora 157.3 KiB mpfr x86_64 0:4.2.2-3.fc44 fedora 849.1 KiB ncurses-base noarch 0:6.6-1.fc44 fedora 329.7 KiB ncurses-libs x86_64 0:6.6-1.fc44 fedora 968.9 KiB nettle x86_64 0:3.10.1-3.fc44 fedora 794.3 KiB ngtcp2 x86_64 0:1.22.1-1.fc44 updates 338.2 KiB ngtcp2-crypto-ossl x86_64 0:1.22.1-1.fc44 updates 51.6 KiB npth x86_64 0:1.8-4.fc44 fedora 49.5 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap x86_64 0:2.6.14-1.fc44 updates 670.9 KiB openssl-libs x86_64 1:3.5.9-1.fc44 updates 9.2 MiB p11-kit x86_64 0:0.26.5-1.fc44 updates 2.6 MiB p11-kit-trust x86_64 0:0.26.5-1.fc44 updates 478.3 KiB package-notes-srpm-macros noarch 0:0.20-1.fc44 updates 1.6 KiB pam-libs x86_64 0:1.7.2-2.fc44 updates 130.5 KiB pcre2 x86_64 0:10.47-1.fc44.1 fedora 718.6 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf x86_64 0:2.5.1-1.fc44 fedora 92.7 KiB pkgconf-m4 noarch 0:2.5.1-1.fc44 fedora 14.3 KiB pkgconf-pkg-config x86_64 0:2.5.1-1.fc44 fedora 989.0 B policycoreutils x86_64 0:3.11-2.fc44 updates 884.8 KiB popt x86_64 0:1.19-10.fc44 fedora 132.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc44 updates 3.4 KiB python-srpm-macros noarch 0:3.14-12.fc44 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc44 updates 472.0 B readline x86_64 0:8.3-4.fc44 fedora 519.5 KiB rpm x86_64 0:6.0.2-1.fc44 updates 3.1 MiB rpm-build-libs x86_64 0:6.0.2-1.fc44 updates 276.3 KiB rpm-libs x86_64 0:6.0.2-1.fc44 updates 961.2 KiB rpm-plugin-selinux x86_64 0:6.0.2-1.fc44 updates 11.9 KiB rpm-sequoia x86_64 0:1.10.3-1.fc44 updates 2.4 MiB rpm-sign-libs x86_64 0:6.0.2-1.fc44 updates 39.6 KiB rust-srpm-macros noarch 0:28.5-1.fc44 updates 5.5 KiB selinux-policy noarch 0:44.11-1.fc44 updates 32.1 KiB selinux-policy-targeted noarch 0:44.11-1.fc44 updates 18.6 MiB setup noarch 0:2.15.0-28.fc44 fedora 724.9 KiB sqlite-libs x86_64 0:3.51.2-2.fc44 updates 1.6 MiB systemd-libs x86_64 0:259.9-1.fc44 updates 2.4 MiB systemd-standalone-sysusers x86_64 0:259.9-1.fc44 updates 305.7 KiB tpm2-tss x86_64 0:4.1.3-9.fc44 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.2-2.fc44 fedora 8.3 KiB util-linux-core x86_64 0:2.41.5-1.fc44 updates 1.5 MiB xxhash-libs x86_64 0:0.8.3-4.fc44 fedora 94.0 KiB xz-libs x86_64 1:5.8.2-2.fc44 fedora 217.7 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip x86_64 0:3.0-45.fc44 fedora 698.0 KiB zlib-ng-compat x86_64 0:2.3.3-3.fc44 fedora 165.6 KiB zstd x86_64 0:1.5.7-5.fc44 fedora 502.4 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 186 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 227 MiB extra will be used (install 227 MiB, remove 0 B). [ 1/186] bzip2-0:1.0.8-23.fc44.x86_64 100% | 814.2 KiB/s | 52.1 KiB | 00m00s [ 2/186] cpio-0:2.15-9.fc44.x86_64 100% | 3.2 MiB/s | 293.3 KiB | 00m00s [ 3/186] bash-0:5.3.9-3.fc44.x86_64 100% | 16.8 MiB/s | 1.9 MiB | 00m00s [ 4/186] diffutils-0:3.12-5.fc44.x86_6 100% | 7.9 MiB/s | 395.3 KiB | 00m00s [ 5/186] findutils-1:4.10.0-7.fc44.x86 100% | 16.3 MiB/s | 552.5 KiB | 00m00s [ 6/186] gzip-0:1.14-2.fc44.x86_64 100% | 9.7 MiB/s | 179.1 KiB | 00m00s [ 7/186] grep-0:3.12-3.fc44.x86_64 100% | 12.8 MiB/s | 301.6 KiB | 00m00s [ 8/186] info-0:7.2-9.fc44.x86_64 100% | 10.1 MiB/s | 186.7 KiB | 00m00s [ 9/186] patch-0:2.8-4.fc44.x86_64 100% | 6.3 MiB/s | 115.2 KiB | 00m00s [ 10/186] sed-0:4.9-7.fc44.x86_64 100% | 16.4 MiB/s | 319.2 KiB | 00m00s [ 11/186] unzip-0:6.0-69.fc44.x86_64 100% | 10.8 MiB/s | 199.6 KiB | 00m00s [ 12/186] fedora-release-common-0:44-18 100% | 1.4 MiB/s | 23.6 KiB | 00m00s [ 13/186] xz-1:5.8.2-2.fc44.x86_64 100% | 22.0 MiB/s | 607.2 KiB | 00m00s [ 14/186] coreutils-0:9.10-5.fc44.x86_6 100% | 42.2 MiB/s | 1.2 MiB | 00m00s [ 15/186] glibc-minimal-langpack-0:2.43 100% | 4.6 MiB/s | 85.4 KiB | 00m00s [ 16/186] redhat-rpm-config-0:344-2.fc4 100% | 4.2 MiB/s | 78.1 KiB | 00m00s [ 17/186] gawk-0:5.3.2-3.fc44.x86_64 100% | 42.1 MiB/s | 1.1 MiB | 00m00s [ 18/186] rpm-build-0:6.0.2-1.fc44.x86_ 100% | 7.4 MiB/s | 136.8 KiB | 00m00s [ 19/186] shadow-utils-2:4.19.0-7.fc44. 100% | 54.1 MiB/s | 1.3 MiB | 00m00s [ 20/186] tar-2:1.35-9.fc44.x86_64 100% | 32.7 MiB/s | 870.0 KiB | 00m00s [ 21/186] util-linux-0:2.41.5-1.fc44.x8 100% | 44.6 MiB/s | 1.2 MiB | 00m00s [ 22/186] which-0:2.25-1.fc44.x86_64 100% | 2.3 MiB/s | 42.1 KiB | 00m00s [ 23/186] filesystem-0:3.18-52.fc44.x86 100% | 55.6 MiB/s | 1.3 MiB | 00m00s [ 24/186] ncurses-libs-0:6.6-1.fc44.x86 100% | 17.7 MiB/s | 344.1 KiB | 00m00s [ 25/186] bzip2-libs-0:1.0.8-23.fc44.x8 100% | 2.5 MiB/s | 43.8 KiB | 00m00s [ 26/186] pcre2-0:10.47-1.fc44.1.x86_64 100% | 14.3 MiB/s | 277.7 KiB | 00m00s [ 27/186] ed-0:1.22.5-2.fc44.x86_64 100% | 4.6 MiB/s | 85.4 KiB | 00m00s [ 28/186] xz-libs-1:5.8.2-2.fc44.x86_64 100% | 6.3 MiB/s | 116.8 KiB | 00m00s [ 29/186] gmp-1:6.3.0-5.fc44.x86_64 100% | 16.6 MiB/s | 322.5 KiB | 00m00s [ 30/186] mpfr-0:4.2.2-3.fc44.x86_64 100% | 17.5 MiB/s | 357.8 KiB | 00m00s [ 31/186] coreutils-common-0:9.10-5.fc4 100% | 59.2 MiB/s | 2.1 MiB | 00m00s [ 32/186] readline-0:8.3-4.fc44.x86_64 100% | 11.8 MiB/s | 229.8 KiB | 00m00s [ 33/186] glibc-common-0:2.43-9.fc44.x8 100% | 19.3 MiB/s | 375.6 KiB | 00m00s [ 34/186] gnome-srpm-macros-0:1.0-1.fc4 100% | 509.3 KiB/s | 8.7 KiB | 00m00s [ 35/186] ansible-srpm-macros-0:1-20.1. 100% | 1.2 MiB/s | 20.1 KiB | 00m00s [ 36/186] cmake-srpm-macros-0:4.3.0-1.f 100% | 613.8 KiB/s | 10.4 KiB | 00m00s [ 37/186] dwz-0:0.16-3.fc44.x86_64 100% | 7.5 MiB/s | 138.9 KiB | 00m00s [ 38/186] efi-srpm-macros-0:6-6.fc44.no 100% | 1.3 MiB/s | 22.6 KiB | 00m00s [ 39/186] erlang-srpm-macros-0:0.3.11-1 100% | 585.7 KiB/s | 10.0 KiB | 00m00s [ 40/186] filesystem-srpm-macros-0:3.18 100% | 1.5 MiB/s | 26.6 KiB | 00m00s [ 41/186] fonts-srpm-macros-1:5.0.0-2.f 100% | 1.6 MiB/s | 27.4 KiB | 00m00s [ 42/186] forge-srpm-macros-0:0.4.0-4.f 100% | 1.1 MiB/s | 20.0 KiB | 00m00s [ 43/186] fpc-srpm-macros-0:1.3-16.fc44 100% | 467.0 KiB/s | 7.9 KiB | 00m00s [ 44/186] gap-srpm-macros-0:2-2.fc44.no 100% | 537.7 KiB/s | 9.1 KiB | 00m00s [ 45/186] ghc-srpm-macros-0:1.10-1.fc44 100% | 488.4 KiB/s | 8.8 KiB | 00m00s [ 46/186] gnat-srpm-macros-0:7-2.fc44.n 100% | 514.2 KiB/s | 8.7 KiB | 00m00s [ 47/186] go-srpm-macros-0:3.8.0-2.fc44 100% | 1.6 MiB/s | 28.2 KiB | 00m00s [ 48/186] java-srpm-macros-0:1-8.fc44.n 100% | 477.4 KiB/s | 8.1 KiB | 00m00s [ 49/186] kernel-srpm-macros-0:1.0-28.f 100% | 502.6 KiB/s | 9.0 KiB | 00m00s [ 50/186] lua-srpm-macros-0:1-17.fc44.n 100% | 522.2 KiB/s | 8.9 KiB | 00m00s [ 51/186] ocaml-srpm-macros-0:11-3.fc44 100% | 515.3 KiB/s | 9.3 KiB | 00m00s [ 52/186] openblas-srpm-macros-0:2-21.f 100% | 433.6 KiB/s | 7.8 KiB | 00m00s [ 53/186] perl-srpm-macros-0:1-61.fc44. 100% | 495.6 KiB/s | 8.4 KiB | 00m00s [ 54/186] python-srpm-macros-0:3.14-12. 100% | 1.1 MiB/s | 24.0 KiB | 00m00s [ 55/186] qt5-srpm-macros-0:5.15.18-2.f 100% | 482.6 KiB/s | 8.7 KiB | 00m00s [ 56/186] tree-sitter-srpm-macros-0:0.4 100% | 792.4 KiB/s | 13.5 KiB | 00m00s [ 57/186] zig-srpm-macros-0:1-8.fc44.no 100% | 518.3 KiB/s | 8.8 KiB | 00m00s [ 58/186] zip-0:3.0-45.fc44.x86_64 100% | 14.3 MiB/s | 264.4 KiB | 00m00s [ 59/186] rpm-0:6.0.2-1.fc44.x86_64 100% | 28.1 MiB/s | 576.1 KiB | 00m00s [ 60/186] popt-0:1.19-10.fc44.x86_64 100% | 3.6 MiB/s | 66.9 KiB | 00m00s [ 61/186] zstd-0:1.5.7-5.fc44.x86_64 100% | 10.4 MiB/s | 192.5 KiB | 00m00s [ 62/186] libeconf-0:0.7.9-3.fc44.x86_6 100% | 2.1 MiB/s | 36.2 KiB | 00m00s [ 63/186] libxcrypt-0:4.5.2-3.fc44.x86_ 100% | 6.7 MiB/s | 131.2 KiB | 00m00s [ 64/186] setup-0:2.15.0-28.fc44.noarch 100% | 8.5 MiB/s | 157.2 KiB | 00m00s [ 65/186] util-linux-core-0:2.41.5-1.fc 100% | 27.3 MiB/s | 558.1 KiB | 00m00s [ 66/186] zlib-ng-compat-0:2.3.3-3.fc44 100% | 4.9 MiB/s | 91.1 KiB | 00m00s [ 67/186] ncurses-base-0:6.6-1.fc44.noa 100% | 4.8 MiB/s | 88.0 KiB | 00m00s [ 68/186] pcre2-syntax-0:10.47-1.fc44.1 100% | 8.9 MiB/s | 164.7 KiB | 00m00s [ 69/186] gnulib-l10n-0:20241231-2.fc44 100% | 8.2 MiB/s | 150.3 KiB | 00m00s [ 70/186] libzstd-0:1.5.7-5.fc44.x86_64 100% | 18.7 MiB/s | 364.2 KiB | 00m00s [ 71/186] rpm-libs-0:6.0.2-1.fc44.x86_6 100% | 21.2 MiB/s | 413.1 KiB | 00m00s [ 72/186] glibc-0:2.43-9.fc44.x86_64 100% | 65.9 MiB/s | 2.4 MiB | 00m00s [ 73/186] lua-libs-0:5.4.8-5.fc44.x86_6 100% | 7.4 MiB/s | 136.6 KiB | 00m00s [ 74/186] glibc-gconv-extra-0:2.43-9.fc 100% | 49.4 MiB/s | 1.6 MiB | 00m00s [ 75/186] rpm-build-libs-0:6.0.2-1.fc44 100% | 7.0 MiB/s | 129.7 KiB | 00m00s [ 76/186] rpm-sign-libs-0:6.0.2-1.fc44. 100% | 1.5 MiB/s | 25.8 KiB | 00m00s [ 77/186] ima-evm-utils-libs-0:1.6.2-8. 100% | 1.6 MiB/s | 30.0 KiB | 00m00s [ 78/186] libfsverity-0:1.6-4.fc44.x86_ 100% | 1.1 MiB/s | 19.2 KiB | 00m00s [ 79/186] tpm2-tss-0:4.1.3-9.fc44.x86_6 100% | 22.7 MiB/s | 440.9 KiB | 00m00s [ 80/186] json-c-0:0.18-8.fc44.x86_64 100% | 2.5 MiB/s | 46.3 KiB | 00m00s [ 81/186] libgcc-0:16.2.1-2.fc44.x86_64 100% | 7.4 MiB/s | 136.3 KiB | 00m00s [ 82/186] libusb1-0:1.0.30-1.fc44.x86_6 100% | 4.5 MiB/s | 83.4 KiB | 00m00s [ 83/186] libstdc++-0:16.2.1-2.fc44.x86 100% | 45.5 MiB/s | 1.0 MiB | 00m00s [ 84/186] libuuid-0:2.41.5-1.fc44.x86_6 100% | 1.5 MiB/s | 27.1 KiB | 00m00s [ 85/186] libblkid-0:2.41.5-1.fc44.x86_ 100% | 7.0 MiB/s | 129.8 KiB | 00m00s [ 86/186] libmount-0:2.41.5-1.fc44.x86_ 100% | 8.0 MiB/s | 172.4 KiB | 00m00s [ 87/186] libacl-0:2.4.0-1.fc44.x86_64 100% | 1.6 MiB/s | 27.3 KiB | 00m00s [ 88/186] crypto-policies-0:20251128-3. 100% | 5.3 MiB/s | 98.3 KiB | 00m00s [ 89/186] openssl-libs-1:3.5.9-1.fc44.x 100% | 74.5 MiB/s | 2.8 MiB | 00m00s [ 90/186] libselinux-0:3.11-2.fc44.x86_ 100% | 5.7 MiB/s | 104.3 KiB | 00m00s [ 91/186] libsepol-0:3.11-1.fc44.x86_64 100% | 18.8 MiB/s | 365.3 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MiB/s | 127.3 KiB | 00m00s [105/186] gpgverify-0:2.2-4.fc44.noarch 100% | 623.8 KiB/s | 11.2 KiB | 00m00s [106/186] gnupg2-dirmngr-0:2.4.9-16.fc4 100% | 14.5 MiB/s | 281.4 KiB | 00m00s [107/186] gnupg2-gpg-agent-0:2.4.9-16.f 100% | 14.5 MiB/s | 281.2 KiB | 00m00s [108/186] gnupg2-gpgconf-0:2.4.9-16.fc4 100% | 6.3 MiB/s | 116.6 KiB | 00m00s [109/186] gnupg2-keyboxd-0:2.4.9-16.fc4 100% | 5.2 MiB/s | 96.8 KiB | 00m00s [110/186] gnupg2-verify-0:2.4.9-16.fc44 100% | 9.6 MiB/s | 176.3 KiB | 00m00s [111/186] libassuan-0:2.5.7-5.fc44.x86_ 100% | 3.7 MiB/s | 68.9 KiB | 00m00s [112/186] libgpg-error-0:1.58-2.fc44.x8 100% | 13.1 MiB/s | 254.1 KiB | 00m00s [113/186] npth-0:1.8-4.fc44.x86_64 100% | 1.4 MiB/s | 25.8 KiB | 00m00s [114/186] libksba-0:1.6.7-5.fc44.x86_64 100% | 9.1 MiB/s | 167.4 KiB | 00m00s [115/186] libcap-0:2.78-1.fc44.x86_64 100% | 4.8 MiB/s | 88.1 KiB | 00m00s [116/186] gnupg2-0:2.4.9-16.fc44.x86_64 100% | 13.9 MiB/s | 1.7 MiB | 00m00s [117/186] rpm-sequoia-0:1.10.3-1.fc44.x 100% | 41.8 MiB/s | 940.9 KiB | 00m00s [118/186] sqlite-libs-0:3.51.2-2.fc44.x 100% | 35.4 MiB/s | 796.6 KiB | 00m00s [119/186] file-libs-0:5.46-10.fc44.x86_ 100% | 37.9 MiB/s | 853.6 KiB | 00m00s [120/186] file-0:5.46-10.fc44.x86_64 100% | 2.8 MiB/s | 48.7 KiB | 00m00s [121/186] libgomp-0:16.2.1-2.fc44.x86_6 100% | 20.4 MiB/s | 397.7 KiB | 00m00s [122/186] alternatives-0:1.33-5.fc44.x8 100% | 2.3 MiB/s | 40.8 KiB | 00m00s [123/186] jansson-0:2.14-4.fc44.x86_64 100% | 2.7 MiB/s | 47.1 KiB | 00m00s [124/186] debugedit-0:5.3-2.fc44.x86_64 100% | 5.0 MiB/s | 87.8 KiB | 00m00s [125/186] libarchive-0:3.8.7-1.fc44.x86 100% | 22.7 MiB/s | 442.4 KiB | 00m00s [126/186] binutils-0:2.46.1-1.fc44.x86_ 100% | 108.4 MiB/s | 6.2 MiB | 00m00s [127/186] libxml2-0:2.12.10-6.fc44.x86_ 100% | 33.7 MiB/s | 724.6 KiB | 00m00s [128/186] lz4-libs-0:1.10.0-4.fc44.x86_ 100% | 4.5 MiB/s | 77.7 KiB | 00m00s [129/186] pkgconf-pkg-config-0:2.5.1-1. 100% | 556.9 KiB/s | 9.5 KiB | 00m00s [130/186] pkgconf-0:2.5.1-1.fc44.x86_64 100% | 2.8 MiB/s | 48.7 KiB | 00m00s [131/186] pkgconf-m4-0:2.5.1-1.fc44.noa 100% | 809.0 KiB/s | 13.8 KiB | 00m00s [132/186] libpkgconf-0:2.5.1-1.fc44.x86 100% | 2.3 MiB/s | 42.7 KiB | 00m00s [133/186] R-srpm-macros-0:1.3.7-2.fc44. 100% | 645.0 KiB/s | 11.0 KiB | 00m00s [134/186] curl-0:8.18.0-10.fc44.x86_64 100% | 10.7 MiB/s | 240.2 KiB | 00m00s [135/186] build-reproducibility-srpm-ma 100% | 741.6 KiB/s | 13.3 KiB | 00m00s [136/186] add-determinism-0:0.7.3-2.fc4 100% | 39.7 MiB/s | 854.6 KiB | 00m00s [137/186] linkdupes-0:0.7.3-2.fc44.x86_ 100% | 17.7 MiB/s | 344.8 KiB | 00m00s [138/186] package-notes-srpm-macros-0:0 100% | 609.9 KiB/s | 10.4 KiB | 00m00s [139/186] pyproject-srpm-macros-0:1.23. 100% | 862.4 KiB/s | 15.5 KiB | 00m00s [140/186] qt6-srpm-macros-0:6.11.2-1.fc 100% | 504.4 KiB/s | 9.1 KiB | 00m00s [141/186] rust-srpm-macros-0:28.5-1.fc4 100% | 622.0 KiB/s | 11.2 KiB | 00m00s [142/186] ca-certificates-0:2026.2.90_v 100% | 43.2 MiB/s | 973.3 KiB | 00m00s [143/186] libgcrypt-0:1.12.2-1.fc44.x86 100% | 29.3 MiB/s | 629.8 KiB | 00m00s [144/186] gnutls-0:3.8.13-1.fc44.x86_64 100% | 49.2 MiB/s | 1.4 MiB | 00m00s [145/186] libidn2-0:2.3.8-3.fc44.x86_64 100% | 9.0 MiB/s | 175.6 KiB | 00m00s [146/186] libtasn1-0:4.21.0-1.fc44.x86_ 100% | 4.1 MiB/s | 76.0 KiB | 00m00s [147/186] libunistring-0:1.1-11.fc44.x8 100% | 25.5 MiB/s | 547.8 KiB | 00m00s [148/186] nettle-0:3.10.1-3.fc44.x86_64 100% | 22.0 MiB/s | 428.0 KiB | 00m00s [149/186] openldap-0:2.6.14-1.fc44.x86_ 100% | 14.0 MiB/s | 271.5 KiB | 00m00s [150/186] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 37.2 MiB/s | 800.7 KiB | 00m00s [151/186] libtool-ltdl-0:2.5.4-10.fc44. 100% | 2.1 MiB/s | 37.0 KiB | 00m00s [152/186] gdbm-libs-1:1.23-11.fc44.x86_ 100% | 3.4 MiB/s | 58.8 KiB | 00m00s [153/186] fedora-repos-0:44-2.noarch 100% | 504.6 KiB/s | 9.1 KiB | 00m00s [154/186] elfutils-default-yama-scope-0 100% | 630.5 KiB/s | 11.3 KiB | 00m00s [155/186] fedora-gpg-keys-0:44-2.noarch 100% | 10.2 MiB/s | 187.6 KiB | 00m00s [156/186] libpfm-0:4.13.0-20.fc44.x86_6 100% | 12.3 MiB/s | 227.3 KiB | 00m00s [157/186] libffi-0:3.5.2-2.fc44.x86_64 100% | 2.3 MiB/s | 42.4 KiB | 00m00s [158/186] p11-kit-0:0.26.5-1.fc44.x86_6 100% | 27.4 MiB/s | 560.6 KiB | 00m00s [159/186] p11-kit-trust-0:0.26.5-1.fc44 100% | 8.0 MiB/s | 146.5 KiB | 00m00s [160/186] libevent-0:2.1.13-1.fc44.x86_ 100% | 14.9 MiB/s | 289.2 KiB | 00m00s [161/186] fedora-release-0:44-18.noarch 100% | 692.3 KiB/s | 12.5 KiB | 00m00s [162/186] systemd-standalone-sysusers-0 100% | 8.2 MiB/s | 151.8 KiB | 00m00s [163/186] xxhash-libs-0:0.8.3-4.fc44.x8 100% | 2.0 MiB/s | 41.2 KiB | 00m00s [164/186] fedora-release-identity-basic 100% | 629.7 KiB/s | 13.2 KiB | 00m00s [165/186] gdb-minimal-0:17.2-4.fc44.x86 100% | 96.6 MiB/s | 4.7 MiB | 00m00s [166/186] libcurl-0:8.18.0-10.fc44.x86_ 100% | 15.9 MiB/s | 455.7 KiB | 00m00s [167/186] libnghttp3-0:1.18.0-1.fc44.x8 100% | 4.3 MiB/s | 75.3 KiB | 00m00s [168/186] libssh-0:0.12.2-1.fc44.x86_64 100% | 15.2 MiB/s | 295.9 KiB | 00m00s [169/186] ngtcp2-0:1.22.1-1.fc44.x86_64 100% | 8.1 MiB/s | 157.4 KiB | 00m00s [170/186] libbrotli-0:1.2.0-3.fc44.x86_ 100% | 17.9 MiB/s | 347.8 KiB | 00m00s [171/186] libpsl-0:0.21.5-7.fc44.x86_64 100% | 3.5 MiB/s | 65.3 KiB | 00m00s [172/186] libssh-config-0:0.12.2-1.fc44 100% | 525.8 KiB/s | 8.9 KiB | 00m00s [173/186] libfido2-0:1.16.0-5.fc44.x86_ 100% | 5.7 MiB/s | 104.5 KiB | 00m00s [174/186] publicsuffix-list-dafsa-0:202 100% | 3.3 MiB/s | 60.3 KiB | 00m00s [175/186] libcbor-0:0.13.0-2.fc44.x86_6 100% | 2.0 MiB/s | 36.0 KiB | 00m00s [176/186] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 1.5 MiB/s | 27.8 KiB | 00m00s [177/186] selinux-policy-0:44.11-1.fc44 100% | 1.5 MiB/s | 27.0 KiB | 00m00s [178/186] rpm-plugin-selinux-0:6.0.2-1. 100% | 892.2 KiB/s | 17.0 KiB | 00m00s [179/186] policycoreutils-0:3.11-2.fc44 100% | 14.1 MiB/s | 259.0 KiB | 00m00s [180/186] libselinux-utils-0:3.11-2.fc4 100% | 6.9 MiB/s | 119.7 KiB | 00m00s [181/186] keyutils-libs-0:1.6.3-7.fc44. 100% | 1.8 MiB/s | 31.5 KiB | 00m00s [182/186] krb5-libs-0:1.22.2-4.fc44.x86 100% | 37.3 MiB/s | 802.6 KiB | 00m00s [183/186] selinux-policy-targeted-0:44. 100% | 94.2 MiB/s | 6.8 MiB | 00m00s [184/186] libcom_err-0:1.47.3-4.fc44.x8 100% | 1.5 MiB/s | 27.1 KiB | 00m00s [185/186] libverto-0:0.3.2-12.fc44.x86_ 100% | 960.3 KiB/s | 21.1 KiB | 00m00s [186/186] libnghttp2-0:1.68.0-5.fc44.x8 100% | 4.2 MiB/s | 76.6 KiB | 00m00s -------------------------------------------------------------------------------- [186/186] Total 100% | 49.5 MiB/s | 69.4 MiB | 00m01s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. [ 1/188] Verify package files 100% | 671.0 B/s | 186.0 B | 00m00s [ 2/188] Prepare transaction 100% | 3.5 KiB/s | 186.0 B | 00m00s [ 3/188] Installing libgcc-0:16.2.1-2. 100% | 266.0 MiB/s | 272.3 KiB | 00m00s [ 4/188] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 5/188] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/188] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0 B | 00m00s [ 7/188] Installing fedora-gpg-keys-0: 100% | 49.6 MiB/s | 355.3 KiB | 00m00s [ 8/188] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/188] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 10/188] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/188] Installing setup-0:2.15.0-28. 100% | 47.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/188] Installing filesystem-0:3.18- 100% | 2.8 MiB/s | 212.8 KiB | 00m00s [ 13/188] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [ 14/188] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 15/188] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 16/188] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/188] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 18/188] Installing coreutils-common-0 100% | 368.5 MiB/s | 10.7 MiB | 00m00s [ 19/188] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 20/188] Installing ncurses-base-0:6.6 100% | 86.7 MiB/s | 355.3 KiB | 00m00s [ 21/188] Installing bash-0:5.3.9-3.fc4 100% | 265.0 MiB/s | 8.5 MiB | 00m00s [ 22/188] Installing glibc-common-0:2.4 100% | 60.3 MiB/s | 1.0 MiB | 00m00s [ 23/188] Installing glibc-gconv-extra- 100% | 288.5 MiB/s | 7.5 MiB | 00m00s [ 24/188] Installing glibc-0:2.43-9.fc4 100% | 177.9 MiB/s | 6.9 MiB | 00m00s [ 25/188] Installing ncurses-libs-0:6.6 100% | 238.1 MiB/s | 975.4 KiB | 00m00s [ 26/188] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/188] Installing zlib-ng-compat-0:2 100% | 162.6 MiB/s | 166.5 KiB | 00m00s [ 28/188] Installing bzip2-libs-0:1.0.8 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 29/188] Installing libgpg-error-0:1.5 100% | 57.8 MiB/s | 947.5 KiB | 00m00s [ 30/188] Installing libstdc++-0:16.2.1 100% | 386.2 MiB/s | 3.1 MiB | 00m00s [ 31/188] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB | 00m00s [ 32/188] Installing libgcrypt-0:1.12.2 100% | 331.7 MiB/s | 1.7 MiB | 00m00s [ 33/188] Installing readline-0:8.3-4.f 100% | 254.7 MiB/s | 521.6 KiB | 00m00s [ 34/188] Installing xz-libs-1:5.8.2-2. 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [ 35/188] Installing gmp-1:6.3.0-5.fc44 100% | 399.2 MiB/s | 817.5 KiB | 00m00s [ 36/188] Installing libzstd-0:1.5.7-5. 100% | 311.6 MiB/s | 957.4 KiB | 00m00s [ 37/188] Installing elfutils-libelf-0: 100% | 360.7 MiB/s | 1.4 MiB | 00m00s [ 38/188] Installing libuuid-0:2.41.5-1 100% | 0.0 B/s | 38.3 KiB | 00m00s [ 39/188] Installing libacl-0:2.4.0-1.f 100% | 0.0 B/s | 40.7 KiB | 00m00s [ 40/188] Installing popt-0:1.19-10.fc4 100% | 68.0 MiB/s | 139.3 KiB | 00m00s [ 41/188] Installing systemd-libs-0:259 100% | 350.1 MiB/s | 2.5 MiB | 00m00s [ 42/188] Installing npth-0:1.8-4.fc44. 100% | 0.0 B/s | 50.6 KiB | 00m00s [ 43/188] Installing libblkid-0:2.41.5- 100% | 268.8 MiB/s | 275.3 KiB | 00m00s [ 44/188] Installing libxcrypt-0:4.5.2- 100% | 289.0 MiB/s | 295.9 KiB | 00m00s [ 45/188] Installing libsepol-0:3.11-1. 100% | 280.9 MiB/s | 863.0 KiB | 00m00s [ 46/188] Installing sqlite-libs-0:3.51 100% | 397.6 MiB/s | 1.6 MiB | 00m00s [ 47/188] Installing gnupg2-gpgconf-0:2 100% | 18.9 MiB/s | 251.8 KiB | 00m00s [ 48/188] Installing pcre2-0:10.47-1.fc 100% | 351.6 MiB/s | 720.0 KiB | 00m00s [ 49/188] Installing libselinux-0:3.11- 100% | 201.6 MiB/s | 206.5 KiB | 00m00s [ 50/188] Installing grep-0:3.12-3.fc44 100% | 62.7 MiB/s | 1.0 MiB | 00m00s [ 51/188] Installing sed-0:4.9-7.fc44.x 100% | 56.3 MiB/s | 865.4 KiB | 00m00s [ 52/188] Installing findutils-1:4.10.0 100% | 103.9 MiB/s | 1.9 MiB | 00m00s [ 53/188] Installing json-c-0:0.18-8.fc 100% | 81.9 MiB/s | 83.9 KiB | 00m00s [ 54/188] Installing libtasn1-0:4.21.0- 100% | 178.2 MiB/s | 182.4 KiB | 00m00s [ 55/188] Installing libunistring-0:1.1 100% | 346.9 MiB/s | 1.7 MiB | 00m00s [ 56/188] Installing libidn2-0:2.3.8-3. 100% | 54.9 MiB/s | 562.6 KiB | 00m00s [ 57/188] Installing crypto-policies-0: 100% | 38.5 MiB/s | 157.7 KiB | 00m00s [ 58/188] Installing xz-1:5.8.2-2.fc44. 100% | 72.1 MiB/s | 1.4 MiB | 00m00s [ 59/188] Installing libmount-0:2.41.5- 100% | 192.3 MiB/s | 393.7 KiB | 00m00s [ 60/188] Installing gnupg2-verify-0:2. 100% | 27.2 MiB/s | 361.7 KiB | 00m00s [ 61/188] Installing dwz-0:0.16-3.fc44. 100% | 22.0 MiB/s | 292.3 KiB | 00m00s [ 62/188] Installing mpfr-0:4.2.2-3.fc4 100% | 276.9 MiB/s | 850.8 KiB | 00m00s [ 63/188] Installing gawk-0:5.3.2-3.fc4 100% | 101.9 MiB/s | 1.8 MiB | 00m00s [ 64/188] Installing libksba-0:1.6.7-5. 100% | 203.6 MiB/s | 416.9 KiB | 00m00s [ 65/188] Installing unzip-0:6.0-69.fc4 100% | 31.3 MiB/s | 449.3 KiB | 00m00s [ 66/188] Installing file-libs-0:5.46-1 100% | 624.5 MiB/s | 11.9 MiB | 00m00s [ 67/188] Installing file-0:5.46-10.fc4 100% | 7.6 MiB/s | 101.6 KiB | 00m00s [ 68/188] Installing diffutils-0:3.12-5 100% | 92.5 MiB/s | 1.6 MiB | 00m00s [ 69/188] Installing libeconf-0:0.7.9-3 100% | 64.9 MiB/s | 66.4 KiB | 00m00s [ 70/188] Installing lua-libs-0:5.4.8-5 100% | 276.6 MiB/s | 283.2 KiB | 00m00s [ 71/188] Installing libattr-0:2.6.0-1. 100% | 0.0 B/s | 25.2 KiB | 00m00s [ 72/188] Installing libsmartcols-0:2.4 100% | 185.0 MiB/s | 189.5 KiB | 00m00s [ 73/188] Installing libcap-ng-0:0.9.6- 100% | 69.0 MiB/s | 70.6 KiB | 00m00s [ 74/188] Installing audit-libs-0:4.2.1 100% | 191.9 MiB/s | 393.1 KiB | 00m00s [ 75/188] Installing pam-libs-0:1.7.2-2 100% | 129.6 MiB/s | 132.7 KiB | 00m00s [ 76/188] Installing libcap-0:2.78-1.fc 100% | 16.3 MiB/s | 217.2 KiB | 00m00s [ 77/188] Installing libsemanage-0:3.11 100% | 310.7 MiB/s | 318.2 KiB | 00m00s [ 78/188] Installing alternatives-0:1.3 100% | 4.8 MiB/s | 63.6 KiB | 00m00s [ 79/188] Installing libffi-0:3.5.2-2.f 100% | 87.0 MiB/s | 89.1 KiB | 00m00s [ 80/188] Installing p11-kit-0:0.26.5-1 100% | 125.3 MiB/s | 2.6 MiB | 00m00s [ 81/188] Installing p11-kit-trust-0:0. 100% | 22.3 MiB/s | 480.1 KiB | 00m00s [ 82/188] Installing ngtcp2-0:1.22.1-1. 100% | 165.9 MiB/s | 339.8 KiB | 00m00s [ 83/188] Installing openssl-libs-1:3.5 100% | 354.3 MiB/s | 9.2 MiB | 00m00s [ 84/188] Installing coreutils-0:9.10-5 100% | 167.6 MiB/s | 5.7 MiB | 00m00s [ 85/188] Installing ca-certificates-0: 100% | 2.2 MiB/s | 2.5 MiB | 00m01s [ 86/188] Installing gzip-0:1.14-2.fc44 100% | 26.5 MiB/s | 407.1 KiB | 00m00s [ 87/188] Installing libfsverity-0:1.6- 100% | 28.7 MiB/s | 29.4 KiB | 00m00s [ 88/188] Installing rpm-sequoia-0:1.10 100% | 350.2 MiB/s | 2.5 MiB | 00m00s [ 89/188] Installing libevent-0:2.1.13- 100% | 320.5 MiB/s | 984.4 KiB | 00m00s [ 90/188] Installing ngtcp2-crypto-ossl 100% | 0.0 B/s | 52.5 KiB | 00m00s [ 91/188] Installing liblastlog2-0:2.41 100% | 6.1 MiB/s | 43.7 KiB | 00m00s [ 92/188] Installing util-linux-core-0: 100% | 73.9 MiB/s | 1.5 MiB | 00m00s [ 93/188] Installing zip-0:3.0-45.fc44. 100% | 49.0 MiB/s | 701.9 KiB | 00m00s [ 94/188] Installing gnupg2-keyboxd-0:2 100% | 32.9 MiB/s | 202.4 KiB | 00m00s [ 95/188] Installing libpsl-0:0.21.5-7. 100% | 75.6 MiB/s | 77.4 KiB | 00m00s [ 96/188] Installing tar-2:1.35-9.fc44. 100% | 135.4 MiB/s | 3.0 MiB | 00m00s [ 97/188] Installing linkdupes-0:0.7.3- 100% | 50.9 MiB/s | 782.3 KiB | 00m00s [ 98/188] Installing libselinux-utils-0 100% | 20.8 MiB/s | 320.2 KiB | 00m00s [ 99/188] Installing systemd-standalone 100% | 23.0 MiB/s | 306.4 KiB | 00m00s [100/188] Installing rpm-libs-0:6.0.2-1 100% | 313.4 MiB/s | 962.8 KiB | 00m00s [101/188] Installing libfdisk-0:2.41.5- 100% | 126.8 MiB/s | 389.4 KiB | 00m00s [102/188] Installing util-linux-0:2.41. 100% | 99.5 MiB/s | 3.6 MiB | 00m00s [103/188] Installing policycoreutils-0: 100% | 34.3 MiB/s | 913.0 KiB | 00m00s [104/188] Installing selinux-policy-0:4 100% | 1.6 MiB/s | 34.5 KiB | 00m00s [105/188] Installing selinux-policy-tar 100% | 198.8 MiB/s | 14.9 MiB | 00m00s [106/188] Installing libusb1-0:1.0.30-1 100% | 21.7 MiB/s | 177.7 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/188] Installing tpm2-tss-0:4.1.3-9 100% | 272.2 MiB/s | 1.6 MiB | 00m00s [108/188] Installing ima-evm-utils-libs 100% | 60.4 MiB/s | 61.9 KiB | 00m00s [109/188] Installing gnupg2-gpg-agent-0 100% | 29.3 MiB/s | 690.5 KiB | 00m00s [110/188] Installing zstd-0:1.5.7-5.fc4 100% | 32.9 MiB/s | 506.0 KiB | 00m00s [111/188] Installing nettle-0:3.10.1-3. 100% | 259.6 MiB/s | 797.4 KiB | 00m00s [112/188] Installing gnutls-0:3.8.13-1. 100% | 349.9 MiB/s | 3.8 MiB | 00m00s [113/188] Installing libxml2-0:2.12.10- 100% | 98.4 MiB/s | 1.8 MiB | 00m00s [114/188] Installing bzip2-0:1.0.8-23.f 100% | 7.5 MiB/s | 99.5 KiB | 00m00s [115/188] Installing add-determinism-0: 100% | 121.2 MiB/s | 2.2 MiB | 00m00s [116/188] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [117/188] Installing cpio-0:2.15-9.fc44 100% | 69.0 MiB/s | 1.1 MiB | 00m00s [118/188] Installing ed-0:1.22.5-2.fc44 100% | 11.4 MiB/s | 152.0 KiB | 00m00s [119/188] Installing patch-0:2.8-4.fc44 100% | 17.1 MiB/s | 228.1 KiB | 00m00s [120/188] Installing libgomp-0:16.2.1-2 100% | 282.6 MiB/s | 578.9 KiB | 00m00s [121/188] Installing jansson-0:2.14-4.f 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [122/188] Installing lz4-libs-0:1.10.0- 100% | 154.6 MiB/s | 158.4 KiB | 00m00s [123/188] Installing libarchive-0:3.8.7 100% | 326.0 MiB/s | 1.0 MiB | 00m00s [124/188] Installing libpkgconf-0:2.5.1 100% | 89.1 MiB/s | 91.3 KiB | 00m00s [125/188] Installing pkgconf-0:2.5.1-1. 100% | 7.2 MiB/s | 95.2 KiB | 00m00s [126/188] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [127/188] Installing libtool-ltdl-0:2.5 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [128/188] Installing gdbm-libs-1:1.23-1 100% | 128.3 MiB/s | 131.3 KiB | 00m00s [129/188] Installing cyrus-sasl-lib-0:2 100% | 128.4 MiB/s | 2.3 MiB | 00m00s [130/188] Installing openldap-0:2.6.14- 100% | 219.6 MiB/s | 674.7 KiB | 00m00s [131/188] Installing gnupg2-dirmngr-0:2 100% | 29.6 MiB/s | 636.7 KiB | 00m00s [132/188] Installing gnupg2-0:2.4.9-16. 100% | 209.8 MiB/s | 6.5 MiB | 00m00s [133/188] Installing rpm-sign-libs-0:6. 100% | 39.5 MiB/s | 40.5 KiB | 00m00s [134/188] Installing gpgverify-0:2.2-4. 100% | 0.0 B/s | 9.4 KiB | 00m00s [135/188] Installing libpfm-0:4.13.0-20 100% | 432.1 MiB/s | 1.7 MiB | 00m00s [136/188] Installing xxhash-libs-0:0.8. 100% | 93.2 MiB/s | 95.4 KiB | 00m00s [137/188] Installing libnghttp3-0:1.18. 100% | 161.0 MiB/s | 164.8 KiB | 00m00s [138/188] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [139/188] Installing libcbor-0:0.13.0-2 100% | 79.0 MiB/s | 80.9 KiB | 00m00s [140/188] Installing libfido2-0:1.16.0- 100% | 242.1 MiB/s | 247.9 KiB | 00m00s [141/188] Installing keyutils-libs-0:1. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [142/188] Installing libcom_err-0:1.47. 100% | 62.6 MiB/s | 64.1 KiB | 00m00s [143/188] Installing libverto-0:0.3.2-1 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [144/188] Installing krb5-libs-0:1.22.2 100% | 299.3 MiB/s | 2.4 MiB | 00m00s [145/188] Installing libssh-0:0.12.2-1. 100% | 236.9 MiB/s | 727.6 KiB | 00m00s [146/188] Installing libnghttp2-0:1.68. 100% | 163.3 MiB/s | 167.3 KiB | 00m00s [147/188] Installing libcurl-0:8.18.0-1 100% | 332.7 MiB/s | 1.0 MiB | 00m00s [148/188] Installing curl-0:8.18.0-10.f 100% | 19.6 MiB/s | 482.7 KiB | 00m00s [149/188] Installing rpm-0:6.0.2-1.fc44 100% | 75.0 MiB/s | 2.6 MiB | 00m00s [150/188] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [151/188] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [152/188] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/188] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [154/188] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [155/188] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [156/188] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [157/188] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [158/188] Installing elfutils-libs-0:0. 100% | 233.5 MiB/s | 717.2 KiB | 00m00s [159/188] Installing elfutils-debuginfo 100% | 5.6 MiB/s | 86.2 KiB | 00m00s [160/188] Installing elfutils-0:0.196-1 100% | 150.7 MiB/s | 3.2 MiB | 00m00s [161/188] Installing binutils-0:2.46.1- 100% | 321.1 MiB/s | 28.3 MiB | 00m00s [162/188] Installing gdb-minimal-0:17.2 100% | 272.3 MiB/s | 14.2 MiB | 00m00s [163/188] Installing debugedit-0:5.3-2. 100% | 15.6 MiB/s | 224.0 KiB | 00m00s [164/188] Installing rpm-build-libs-0:6 100% | 135.3 MiB/s | 277.2 KiB | 00m00s [165/188] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [166/188] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [167/188] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [168/188] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [169/188] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [170/188] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [171/188] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [172/188] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [173/188] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [174/188] Installing ansible-srpm-macro 100% | 7.1 MiB/s | 36.2 KiB | 00m00s [175/188] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [176/188] Installing redhat-rpm-config- 100% | 92.7 MiB/s | 189.9 KiB | 00m00s [177/188] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [178/188] Installing rpm-build-0:6.0.2- 100% | 19.8 MiB/s | 303.5 KiB | 00m00s [179/188] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.5 KiB | 00m00s [180/188] Installing pyproject-srpm-mac 100% | 0.0 B/s | 4.0 KiB | 00m00s [181/188] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [182/188] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [183/188] Installing python-srpm-macros 100% | 0.0 B/s | 52.9 KiB | 00m00s [184/188] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [185/188] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.9 KiB | 00m00s [186/188] Installing which-0:2.25-1.fc4 100% | 6.0 MiB/s | 85.8 KiB | 00m00s [187/188] Installing shadow-utils-2:4.1 100% | 138.9 MiB/s | 4.0 MiB | 00m00s [188/188] Installing info-0:7.2-9.fc44. 100% | 50.4 KiB/s | 366.0 KiB | 00m07s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc44.noarch add-determinism-0.7.3-2.fc44.x86_64 alternatives-1.33-5.fc44.x86_64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.2.1-1.fc44.x86_64 bash-5.3.9-3.fc44.x86_64 binutils-2.46.1-1.fc44.x86_64 build-reproducibility-srpm-macros-0.7.3-2.fc44.noarch bzip2-1.0.8-23.fc44.x86_64 bzip2-libs-1.0.8-23.fc44.x86_64 ca-certificates-2026.2.90_v9.0.317-1.fc44.noarch cmake-srpm-macros-4.3.0-1.fc44.noarch coreutils-9.10-5.fc44.x86_64 coreutils-common-9.10-5.fc44.x86_64 cpio-2.15-9.fc44.x86_64 crypto-policies-20251128-3.git19878fe.fc44.noarch curl-8.18.0-10.fc44.x86_64 cyrus-sasl-lib-2.1.28-35.fc44.x86_64 debugedit-5.3-2.fc44.x86_64 diffutils-3.12-5.fc44.x86_64 dwz-0.16-3.fc44.x86_64 ed-1.22.5-2.fc44.x86_64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.196-1.fc44.x86_64 elfutils-debuginfod-client-0.196-1.fc44.x86_64 elfutils-default-yama-scope-0.196-1.fc44.noarch elfutils-libelf-0.196-1.fc44.x86_64 elfutils-libs-0.196-1.fc44.x86_64 erlang-srpm-macros-0.3.11-1.fc44.noarch fedora-gpg-keys-44-2.noarch fedora-release-44-18.noarch fedora-release-common-44-18.noarch fedora-release-identity-basic-44-18.noarch fedora-repos-44-2.noarch file-5.46-10.fc44.x86_64 file-libs-5.46-10.fc44.x86_64 filesystem-3.18-52.fc44.x86_64 filesystem-srpm-macros-3.18-52.fc44.noarch findutils-4.10.0-7.fc44.x86_64 fonts-srpm-macros-5.0.0-2.fc44.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.3.2-3.fc44.x86_64 gdb-minimal-17.2-4.fc44.x86_64 gdbm-libs-1.23-11.fc44.x86_64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43-9.fc44.x86_64 glibc-common-2.43-9.fc44.x86_64 glibc-gconv-extra-2.43-9.fc44.x86_64 glibc-minimal-langpack-2.43-9.fc44.x86_64 gmp-6.3.0-5.fc44.x86_64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc44.noarch gnulib-l10n-20241231-2.fc44.noarch gnupg2-2.4.9-16.fc44.x86_64 gnupg2-dirmngr-2.4.9-16.fc44.x86_64 gnupg2-gpg-agent-2.4.9-16.fc44.x86_64 gnupg2-gpgconf-2.4.9-16.fc44.x86_64 gnupg2-keyboxd-2.4.9-16.fc44.x86_64 gnupg2-verify-2.4.9-16.fc44.x86_64 gnutls-3.8.13-1.fc44.x86_64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.x86_64 gzip-1.14-2.fc44.x86_64 ima-evm-utils-libs-1.6.2-8.fc44.x86_64 info-7.2-9.fc44.x86_64 jansson-2.14-4.fc44.x86_64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.x86_64 kernel-srpm-macros-1.0-28.fc44.noarch keyutils-libs-1.6.3-7.fc44.x86_64 krb5-libs-1.22.2-4.fc44.x86_64 libacl-2.4.0-1.fc44.x86_64 libarchive-3.8.7-1.fc44.x86_64 libassuan-2.5.7-5.fc44.x86_64 libattr-2.6.0-1.fc44.x86_64 libblkid-2.41.5-1.fc44.x86_64 libbrotli-1.2.0-3.fc44.x86_64 libcap-2.78-1.fc44.x86_64 libcap-ng-0.9.6-1.fc44.x86_64 libcbor-0.13.0-2.fc44.x86_64 libcom_err-1.47.3-4.fc44.x86_64 libcurl-8.18.0-10.fc44.x86_64 libeconf-0.7.9-3.fc44.x86_64 libevent-2.1.13-1.fc44.x86_64 libfdisk-2.41.5-1.fc44.x86_64 libffi-3.5.2-2.fc44.x86_64 libfido2-1.16.0-5.fc44.x86_64 libfsverity-1.6-4.fc44.x86_64 libgcc-16.2.1-2.fc44.x86_64 libgcrypt-1.12.2-1.fc44.x86_64 libgomp-16.2.1-2.fc44.x86_64 libgpg-error-1.58-2.fc44.x86_64 libidn2-2.3.8-3.fc44.x86_64 libksba-1.6.7-5.fc44.x86_64 liblastlog2-2.41.5-1.fc44.x86_64 libmount-2.41.5-1.fc44.x86_64 libnghttp2-1.68.0-5.fc44.x86_64 libnghttp3-1.18.0-1.fc44.x86_64 libpfm-4.13.0-20.fc44.x86_64 libpkgconf-2.5.1-1.fc44.x86_64 libpsl-0.21.5-7.fc44.x86_64 libselinux-3.11-2.fc44.x86_64 libselinux-utils-3.11-2.fc44.x86_64 libsemanage-3.11-1.fc44.x86_64 libsepol-3.11-1.fc44.x86_64 libsmartcols-2.41.5-1.fc44.x86_64 libssh-0.12.2-1.fc44.x86_64 libssh-config-0.12.2-1.fc44.noarch libstdc++-16.2.1-2.fc44.x86_64 libtasn1-4.21.0-1.fc44.x86_64 libtool-ltdl-2.5.4-10.fc44.x86_64 libunistring-1.1-11.fc44.x86_64 libusb1-1.0.30-1.fc44.x86_64 libuuid-2.41.5-1.fc44.x86_64 libverto-0.3.2-12.fc44.x86_64 libxcrypt-4.5.2-3.fc44.x86_64 libxml2-2.12.10-6.fc44.x86_64 libzstd-1.5.7-5.fc44.x86_64 linkdupes-0.7.3-2.fc44.x86_64 lua-libs-5.4.8-5.fc44.x86_64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.x86_64 mpfr-4.2.2-3.fc44.x86_64 ncurses-base-6.6-1.fc44.noarch ncurses-libs-6.6-1.fc44.x86_64 nettle-3.10.1-3.fc44.x86_64 ngtcp2-1.22.1-1.fc44.x86_64 ngtcp2-crypto-ossl-1.22.1-1.fc44.x86_64 npth-1.8-4.fc44.x86_64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.14-1.fc44.x86_64 openssl-libs-3.5.9-1.fc44.x86_64 p11-kit-0.26.5-1.fc44.x86_64 p11-kit-trust-0.26.5-1.fc44.x86_64 package-notes-srpm-macros-0.20-1.fc44.noarch pam-libs-1.7.2-2.fc44.x86_64 patch-2.8-4.fc44.x86_64 pcre2-10.47-1.fc44.1.x86_64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc44.x86_64 pkgconf-m4-2.5.1-1.fc44.noarch pkgconf-pkg-config-2.5.1-1.fc44.x86_64 policycoreutils-3.11-2.fc44.x86_64 popt-1.19-10.fc44.x86_64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.23.2-1.fc44.noarch python-srpm-macros-3.14-12.fc44.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.2-1.fc44.noarch readline-8.3-4.fc44.x86_64 redhat-rpm-config-344-2.fc44.noarch rpm-6.0.2-1.fc44.x86_64 rpm-build-6.0.2-1.fc44.x86_64 rpm-build-libs-6.0.2-1.fc44.x86_64 rpm-libs-6.0.2-1.fc44.x86_64 rpm-plugin-selinux-6.0.2-1.fc44.x86_64 rpm-sequoia-1.10.3-1.fc44.x86_64 rpm-sign-libs-6.0.2-1.fc44.x86_64 rust-srpm-macros-28.5-1.fc44.noarch sed-4.9-7.fc44.x86_64 selinux-policy-44.11-1.fc44.noarch selinux-policy-targeted-44.11-1.fc44.noarch setup-2.15.0-28.fc44.noarch shadow-utils-4.19.0-7.fc44.x86_64 sqlite-libs-3.51.2-2.fc44.x86_64 systemd-libs-259.9-1.fc44.x86_64 systemd-standalone-sysusers-259.9-1.fc44.x86_64 tar-1.35-9.fc44.x86_64 tpm2-tss-4.1.3-9.fc44.x86_64 tree-sitter-srpm-macros-0.4.2-2.fc44.noarch unzip-6.0-69.fc44.x86_64 util-linux-2.41.5-1.fc44.x86_64 util-linux-core-2.41.5-1.fc44.x86_64 which-2.25-1.fc44.x86_64 xxhash-libs-0.8.3-4.fc44.x86_64 xz-5.8.2-2.fc44.x86_64 xz-libs-5.8.2-2.fc44.x86_64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.x86_64 zlib-ng-compat-2.3.3-3.fc44.x86_64 zstd-1.5.7-5.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 setting SOURCE_DATE_EPOCH=1791072000 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-8.fc44.src.rpm RPM build warnings: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-x86_64-1791127685.745074/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-pp0mtqyr/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-8.fc44.src.rpm) Config(fedora-44-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-bootstrap-1791127685.745074/root. INFO: reusing tmpfs at /var/lib/mock/fedora-44-x86_64-bootstrap-1791127685.745074/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-44-x86_64-1791127685.745074/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.2-1.fc44.x86_64 rpm-sequoia-1.10.3-1.fc44.x86_64 dnf5-5.4.6.0-1.fc44.x86_64 dnf5-plugins-5.4.6.0-1.fc44.x86_64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-8.fc44.src.rpm Start: build setup for mrtrix3-3.0.8-8.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 setting SOURCE_DATE_EPOCH=1791072000 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-8.fc44.src.rpm RPM build warnings: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 Updating and loading repositories: updates 100% | 134.1 KiB/s | 23.6 KiB | 00m00s fedora 100% | 136.9 KiB/s | 24.1 KiB | 00m00s Copr repository 100% | 102.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils x86_64 0:0.28-5.fc44 fedora 218.0 KiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB fftw-devel x86_64 0:3.3.10-17.fc44 fedora 283.1 KiB gcc-c++ x86_64 0:16.2.1-2.fc44 updates 46.8 MiB git x86_64 0:2.55.0-1.fc44 updates 57.7 KiB libappstream-glib x86_64 0:0.8.4-1.fc44 updates 1.4 MiB libpng-devel x86_64 2:1.6.58-1.fc44 updates 905.9 KiB libtiff-devel x86_64 0:4.7.2-1.fc44 updates 885.0 KiB mesa-libGL-devel x86_64 0:26.2.3-1.fc44 updates 80.8 KiB mesa-libGLU-devel x86_64 0:9.0.3-8.fc44 fedora 17.0 KiB python3 x86_64 0:3.14.7-1.fc44 updates 28.7 KiB python3-devel x86_64 0:3.14.7-1.fc44 updates 2.0 MiB qt5-qtbase-devel x86_64 0:5.15.18-2.fc44 fedora 19.0 MiB qt5-qtsvg-devel x86_64 0:5.15.18-2.fc44 fedora 83.6 KiB zlib-ng-compat-devel x86_64 0:2.3.3-3.fc44 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB annobin-docs noarch 0:13.14-1.fc44 updates 99.3 KiB annobin-plugin-gcc x86_64 0:13.14-1.fc44 updates 699.3 KiB avahi-libs x86_64 0:0.9~rc2-8.fc44 fedora 179.2 KiB bubblewrap x86_64 0:0.12.0-1.fc44 updates 139.8 KiB cairo x86_64 0:1.18.4-6.fc44 fedora 1.8 MiB cairo-gobject x86_64 0:1.18.4-6.fc44 fedora 31.0 KiB cmake x86_64 0:4.3.0-1.fc44 fedora 40.5 MiB cmake-data noarch 0:4.3.0-1.fc44 fedora 9.4 MiB cmake-filesystem x86_64 0:4.3.0-1.fc44 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-1.fc44 fedora 8.4 KiB cpp x86_64 0:16.2.1-2.fc44 updates 42.6 MiB cups-filesystem noarch 1:2.4.19-3.fc44 updates 0.0 B cups-libs x86_64 1:2.4.19-3.fc44 updates 634.6 KiB dbus-libs x86_64 1:1.16.2-1.fc44 fedora 357.4 KiB default-fonts-core-sans noarch 0:4.3-1.fc44 fedora 11.9 KiB double-conversion x86_64 0:3.4.0-3.fc44 fedora 101.8 KiB duktape x86_64 0:2.7.0-11.fc44 fedora 623.6 KiB emacs-filesystem x86_64 1:30.2-2.fc44 fedora 0.0 B expat x86_64 0:2.8.3-1.fc44 updates 334.4 KiB fftw x86_64 0:3.3.10-17.fc44 fedora 181.4 KiB fftw-libs x86_64 0:3.3.10-17.fc44 fedora 0.0 B fftw-libs-double x86_64 0:3.3.10-17.fc44 fedora 3.4 MiB fftw-libs-long x86_64 0:3.3.10-17.fc44 fedora 1.5 MiB fftw-libs-quad x86_64 0:3.3.10-17.fc44 fedora 2.5 MiB fftw-libs-single x86_64 0:3.3.10-17.fc44 fedora 3.6 MiB fontconfig x86_64 0:2.17.0-4.fc44 fedora 776.4 KiB fonts-filesystem noarch 1:5.0.0-2.fc44 fedora 0.0 B freetype x86_64 0:2.14.3-1.fc44 updates 918.3 KiB fribidi x86_64 0:1.0.16-4.fc44 fedora 190.0 KiB gcc x86_64 0:16.2.1-2.fc44 updates 121.8 MiB gcc-plugin-annobin x86_64 0:16.2.1-2.fc44 updates 57.2 KiB gdk-pixbuf2 x86_64 0:2.44.6^really2.44.4-3.fc44 updates 2.5 MiB git-core x86_64 0:2.55.0-1.fc44 updates 25.6 MiB git-core-doc noarch 0:2.55.0-1.fc44 updates 18.9 MiB glib2 x86_64 0:2.88.3-1.fc44 updates 15.3 MiB glibc-devel x86_64 0:2.43-9.fc44 updates 2.3 MiB glx-utils x86_64 0:9.0.0-11.fc44 fedora 418.0 KiB glycin-libs x86_64 0:2.1.5-1.fc44 updates 4.3 MiB glycin-loaders x86_64 0:2.1.5-1.fc44 updates 13.8 MiB google-noto-fonts-common noarch 0:20251201-2.fc44 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20251201-2.fc44 fedora 1.4 MiB graphite2 x86_64 0:1.3.14-20.fc44 fedora 191.5 KiB groff-base x86_64 0:1.23.0-12.fc44 fedora 3.9 MiB harfbuzz x86_64 0:14.1.0-2.fc44 updates 2.8 MiB highway x86_64 0:1.3.0-2.fc44 fedora 5.5 MiB hwdata noarch 0:0.412-1.fc44 updates 10.1 MiB jbigkit-libs x86_64 0:2.1-33.fc44 fedora 117.2 KiB json-glib x86_64 0:1.10.8-5.fc44 fedora 596.2 KiB jsoncpp x86_64 0:1.9.6-3.fc44 fedora 285.6 KiB kernel-headers x86_64 0:7.2.4-200.fc44 updates 7.0 MiB lcms2 x86_64 0:2.16-7.fc44 fedora 445.7 KiB less x86_64 0:704-4.fc44 updates 479.5 KiB libICE x86_64 0:1.1.2-4.fc44 fedora 198.3 KiB libSM x86_64 0:1.2.5-4.fc44 fedora 100.9 KiB libX11 x86_64 0:1.8.13-3.fc44 updates 1.3 MiB libX11-common noarch 0:1.8.13-3.fc44 updates 1.1 MiB libX11-devel x86_64 0:1.8.13-3.fc44 updates 1.0 MiB libX11-xcb x86_64 0:1.8.13-3.fc44 updates 10.8 KiB libXau x86_64 0:1.0.12-4.fc44 fedora 72.8 KiB libXau-devel x86_64 0:1.0.12-4.fc44 fedora 7.3 KiB libXext x86_64 0:1.3.6-5.fc44 fedora 89.8 KiB libXft x86_64 0:2.3.8-10.fc44 fedora 168.3 KiB libXrender x86_64 0:0.9.12-4.fc44 fedora 49.9 KiB libXxf86vm x86_64 0:1.1.6-4.fc44 fedora 25.1 KiB libaom x86_64 0:3.13.3-1.fc44 updates 5.1 MiB libatomic x86_64 0:16.2.1-2.fc44 updates 45.6 KiB libdatrie x86_64 0:0.2.14-2.fc44 fedora 61.7 KiB libdav1d x86_64 0:1.5.4-1.fc44 updates 1.8 MiB libdrm x86_64 0:2.4.134-1.fc44 updates 405.8 KiB libdrm-devel x86_64 0:2.4.134-1.fc44 updates 743.6 KiB libedit x86_64 0:3.1-59.20260512cvs.fc44 updates 248.3 KiB libevdev x86_64 0:1.13.7-1.fc44 updates 89.9 KiB libglvnd x86_64 1:1.7.0-9.fc44 fedora 526.5 KiB libglvnd-core-devel x86_64 1:1.7.0-9.fc44 fedora 40.3 KiB libglvnd-devel x86_64 1:1.7.0-9.fc44 fedora 2.1 MiB libglvnd-egl x86_64 1:1.7.0-9.fc44 fedora 68.6 KiB libglvnd-gles x86_64 1:1.7.0-9.fc44 fedora 97.7 KiB libglvnd-glx x86_64 1:1.7.0-9.fc44 fedora 601.0 KiB libglvnd-opengl x86_64 1:1.7.0-9.fc44 fedora 144.7 KiB libgudev x86_64 0:238-9.fc44 fedora 91.7 KiB libheif x86_64 0:1.23.5-3.fc44 updates 2.4 MiB libicu x86_64 0:77.1-3.fc44 updates 36.6 MiB libinput x86_64 0:1.31.3-1.fc44 updates 701.6 KiB libjpeg-turbo x86_64 0:3.1.3-1.fc44 fedora 818.2 KiB libjpeg-turbo-devel x86_64 0:3.1.3-1.fc44 fedora 353.9 KiB libjxl x86_64 1:0.11.2-1.fc44 updates 4.1 MiB liblerc x86_64 0:4.0.0-10.fc44 fedora 647.9 KiB liblerc-devel x86_64 0:4.0.0-10.fc44 fedora 4.3 MiB libmpc x86_64 0:1.4.1-1.fc44 updates 168.7 KiB libopenjph x86_64 0:0.25.3-3.fc44 fedora 482.1 KiB libpciaccess x86_64 0:0.16-17.fc44 fedora 48.4 KiB libpciaccess-devel x86_64 0:0.16-17.fc44 fedora 15.3 KiB libpng x86_64 2:1.6.58-1.fc44 updates 249.6 KiB libproxy x86_64 0:0.5.12-2.fc44 fedora 102.1 KiB libquadmath x86_64 0:16.2.1-2.fc44 updates 325.9 KiB librsvg2 x86_64 0:2.62.3-1.fc44 updates 5.0 MiB libseccomp x86_64 0:2.6.1-2.fc44 updates 222.2 KiB libstdc++-devel x86_64 0:16.2.1-2.fc44 updates 41.2 MiB libthai x86_64 0:0.1.30-2.fc44 fedora 800.9 KiB libtiff x86_64 0:4.7.2-1.fc44 updates 640.4 KiB libuv x86_64 1:1.52.1-2.fc44 updates 593.1 KiB libvmaf x86_64 0:3.0.0-5.fc44 fedora 846.8 KiB libwacom x86_64 0:2.19.0-1.fc44 updates 114.0 KiB libwacom-data noarch 0:2.19.0-1.fc44 updates 1.4 MiB libwayland-client x86_64 0:1.26.0-1.fc44 updates 66.0 KiB libwebp x86_64 0:1.6.0-3.fc44 fedora 968.0 KiB libwebp-devel x86_64 0:1.6.0-3.fc44 fedora 121.7 KiB libxcb x86_64 0:1.17.0-7.fc44 fedora 1.1 MiB libxcb-devel x86_64 0:1.17.0-7.fc44 fedora 2.6 MiB libxcrypt-devel x86_64 0:4.5.2-3.fc44 fedora 31.0 KiB libxkbcommon x86_64 0:1.13.1-2.fc44 fedora 432.2 KiB libxkbcommon-x11 x86_64 0:1.13.1-2.fc44 fedora 35.4 KiB libxshmfence x86_64 0:1.3.2-8.fc44 fedora 12.3 KiB libzstd-devel x86_64 0:1.5.7-5.fc44 fedora 217.6 KiB llvm-filesystem x86_64 0:22.1.8-4.fc44 updates 0.0 B llvm-libs x86_64 0:22.1.8-4.fc44 updates 140.5 MiB lm_sensors-libs x86_64 0:3.6.0-24.fc44 fedora 85.7 KiB lzo x86_64 0:2.10-16.fc44 fedora 174.8 KiB make x86_64 1:4.4.1-12.fc44 fedora 1.8 MiB mesa-dri-drivers x86_64 0:26.2.3-1.fc44 updates 53.2 MiB mesa-filesystem x86_64 0:26.2.3-1.fc44 updates 3.6 KiB mesa-libEGL x86_64 0:26.2.3-1.fc44 updates 398.4 KiB mesa-libGL x86_64 0:26.2.3-1.fc44 updates 374.1 KiB mesa-libGLU x86_64 0:9.0.3-8.fc44 fedora 369.8 KiB mesa-libgbm x86_64 0:26.2.3-1.fc44 updates 19.5 KiB mpdecimal x86_64 0:4.0.1-3.fc44 fedora 217.1 KiB mtdev x86_64 0:1.1.6-12.fc44 fedora 29.1 KiB ncurses x86_64 0:6.6-1.fc44 fedora 611.4 KiB ninja-build x86_64 0:1.13.2-2.fc44 fedora 496.5 KiB noopenh264 x86_64 0:2.6.0-4.fc44 fedora 39.0 KiB openjpeg x86_64 0:2.5.4-3.fc44 fedora 464.2 KiB openssh x86_64 0:10.2p1-14.fc44 updates 1.4 MiB openssh-clients x86_64 0:10.2p1-14.fc44 updates 2.7 MiB pango x86_64 0:1.57.1-1.fc44 fedora 1.0 MiB pcre2-utf16 x86_64 0:10.47-1.fc44.1 fedora 655.2 KiB perl-AutoLoader noarch 0:5.74-525.fc44 updates 20.6 KiB perl-B x86_64 0:1.89-525.fc44 updates 501.2 KiB perl-Carp noarch 0:1.54-521.fc44 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-525.fc44 updates 25.4 KiB perl-Data-Dumper x86_64 0:2.192-523.fc44 updates 115.5 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 x86_64 0:2.59-521.fc44 fedora 59.6 KiB perl-DynaLoader x86_64 0:1.57-525.fc44 updates 32.1 KiB perl-Encode x86_64 4:3.21-521.fc44 fedora 4.7 MiB perl-English noarch 0:1.11-525.fc44 updates 6.2 KiB perl-Errno x86_64 0:1.38-525.fc44 updates 8.4 KiB perl-Error noarch 1:0.17030-3.fc44 fedora 76.8 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-Fcntl x86_64 0:1.20-525.fc44 updates 48.7 KiB perl-File-Basename noarch 0:2.86-525.fc44 updates 14.0 KiB perl-File-Find noarch 0:1.44-525.fc44 updates 42.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-525.fc44 updates 12.5 KiB perl-FileHandle noarch 0:2.05-525.fc44 updates 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-525.fc44 updates 11.2 KiB perl-Git noarch 0:2.55.0-1.fc44 updates 64.4 KiB perl-HTTP-Tiny noarch 0:0.096-1.fc44 updates 162.4 KiB perl-IO x86_64 0:1.55-525.fc44 updates 147.3 KiB perl-IO-Socket-IP noarch 0:0.43-522.fc44 fedora 100.3 KiB perl-IO-Socket-SSL noarch 0:2.098-2.fc44 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-525.fc44 updates 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 x86_64 0:3.16-521.fc44 fedora 41.9 KiB perl-Net-SSLeay x86_64 0:1.94-12.fc44 fedora 1.3 MiB perl-POSIX x86_64 0:2.23-525.fc44 updates 229.4 KiB perl-PathTools x86_64 0:3.94-521.fc44 fedora 179.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-4.fc44 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.70-2.fc44 fedora 144.8 KiB perl-SelectSaver noarch 0:1.02-525.fc44 updates 2.2 KiB perl-Socket x86_64 4:2.043-1.fc44 updates 121.8 KiB perl-Storable x86_64 1:3.37-522.fc44 fedora 235.1 KiB perl-Symbol noarch 0:1.09-525.fc44 updates 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-TermReadKey x86_64 0:2.38-27.fc44 fedora 63.9 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9778-521.fc44 fedora 115.6 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.36-1.fc44 updates 275.7 KiB perl-Unicode-Normalize x86_64 0:1.32-521.fc44 fedora 486.0 KiB perl-base noarch 0:2.27-525.fc44 updates 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-if noarch 0:0.61.000-525.fc44 updates 5.8 KiB perl-interpreter x86_64 4:5.42.3-525.fc44 updates 118.8 KiB perl-lib x86_64 0:0.65-525.fc44 updates 8.5 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs x86_64 4:5.42.3-525.fc44 updates 11.6 MiB perl-locale noarch 0:1.13-525.fc44 updates 6.1 KiB perl-mro x86_64 0:1.29-525.fc44 updates 41.4 KiB perl-overload noarch 0:1.40-525.fc44 updates 71.6 KiB perl-overloading noarch 0:0.02-525.fc44 updates 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-525.fc44 updates 3.9 KiB pixman x86_64 0:0.46.2-3.fc44 fedora 718.2 KiB pyproject-rpm-macros noarch 0:1.23.2-1.fc44 updates 156.3 KiB python-pip-wheel noarch 0:26.0.1-3.fc44 updates 1.2 MiB python-rpm-macros noarch 0:3.14-12.fc44 fedora 28.0 KiB python3-libs x86_64 0:3.14.7-1.fc44 updates 44.0 MiB python3-packaging noarch 0:25.0-8.fc44 fedora 607.4 KiB python3-rpm-generators noarch 0:14-14.fc44 fedora 81.7 KiB python3-rpm-macros noarch 0:3.14-12.fc44 fedora 6.5 KiB qt-settings noarch 0:44.0-1.fc44 updates 1.1 KiB qt5-filesystem x86_64 0:5.15.18-2.fc44 fedora 0.0 B qt5-qtbase x86_64 0:5.15.18-2.fc44 fedora 9.9 MiB qt5-qtbase-common noarch 0:5.15.18-2.fc44 fedora 78.0 B qt5-qtbase-gui x86_64 0:5.15.18-2.fc44 fedora 20.4 MiB qt5-qtsvg x86_64 0:5.15.18-2.fc44 fedora 627.0 KiB qt5-rpm-macros noarch 0:5.15.18-2.fc44 fedora 1.6 KiB rav1e-libs x86_64 0:0.8.1-3.fc44 fedora 3.1 MiB rhash x86_64 0:1.4.5-4.fc44 fedora 354.8 KiB shared-mime-info x86_64 0:2.4-3.fc44 fedora 5.2 MiB spirv-tools-libs x86_64 0:2026.1-1.fc44 fedora 6.1 MiB svt-av1-libs x86_64 0:3.1.2-2.fc44 fedora 5.6 MiB tzdata noarch 0:2026c-2.fc44 updates 1.2 MiB vim-filesystem noarch 2:9.2.1129-1.fc44 updates 40.0 B vulkan-headers noarch 0:1.4.341.0-1.fc44 fedora 36.1 MiB vulkan-loader x86_64 0:1.4.341.0-1.fc44 fedora 577.6 KiB vulkan-loader-devel x86_64 0:1.4.341.0-1.fc44 fedora 8.0 KiB xcb-util x86_64 0:0.4.1-9.fc44 fedora 26.1 KiB xcb-util-image x86_64 0:0.4.1-9.fc44 fedora 22.0 KiB xcb-util-keysyms x86_64 0:0.4.1-9.fc44 fedora 16.6 KiB xcb-util-renderutil x86_64 0:0.3.10-9.fc44 fedora 24.2 KiB xcb-util-wm x86_64 0:0.4.2-9.fc44 fedora 81.0 KiB xkeyboard-config noarch 0:2.47-1.fc44 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB Transaction Summary: Installing: 249 packages Total size of inbound packages is 257 MiB. Need to download 257 MiB. After this operation, 926 MiB extra will be used (install 926 MiB, remove 0 B). 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100% | 259.7 KiB/s | 16.4 KiB | 00m00s [181/249] perl-SelectSaver-0:1.02-525.f 100% | 178.0 KiB/s | 11.0 KiB | 00m00s [182/249] perl-Class-Struct-0:0.68-525. 100% | 350.6 KiB/s | 21.4 KiB | 00m00s [183/249] perl-B-0:1.89-525.fc44.x86_64 100% | 2.7 MiB/s | 177.1 KiB | 00m00s [184/249] libdrm-devel-0:2.4.134-1.fc44 100% | 2.9 MiB/s | 186.9 KiB | 00m00s [185/249] libwayland-client-0:1.26.0-1. 100% | 581.8 KiB/s | 35.5 KiB | 00m00s [186/249] llvm-filesystem-0:22.1.8-4.fc 100% | 164.2 KiB/s | 10.0 KiB | 00m00s [187/249] libedit-0:3.1-59.20260512cvs. 100% | 1.7 MiB/s | 110.4 KiB | 00m00s [188/249] libjpeg-turbo-devel-0:3.1.3-1 100% | 3.5 MiB/s | 97.1 KiB | 00m00s [189/249] liblerc-devel-0:4.0.0-10.fc44 100% | 96.2 MiB/s | 3.2 MiB | 00m00s [190/249] libwebp-devel-0:1.6.0-3.fc44. 100% | 1.4 MiB/s | 39.3 KiB | 00m00s [191/249] libzstd-devel-0:1.5.7-5.fc44. 100% | 2.0 MiB/s | 56.3 KiB | 00m00s [192/249] libevdev-0:1.13.7-1.fc44.x86_ 100% | 629.2 KiB/s | 39.0 KiB | 00m00s [193/249] libwacom-0:2.19.0-1.fc44.x86_ 100% | 845.1 KiB/s | 52.4 KiB | 00m00s [194/249] libgudev-0:238-9.fc44.x86_64 100% | 1.3 MiB/s | 35.2 KiB | 00m00s [195/249] libwacom-data-0:2.19.0-1.fc44 100% | 5.5 MiB/s | 346.9 KiB | 00m00s [196/249] libpciaccess-devel-0:0.16-17. 100% | 462.7 KiB/s | 12.5 KiB | 00m00s [197/249] kernel-headers-0:7.2.4-200.fc 100% | 26.9 MiB/s | 1.7 MiB | 00m00s [198/249] shared-mime-info-0:2.4-3.fc44 100% | 14.0 MiB/s | 402.0 KiB | 00m00s [199/249] gdk-pixbuf2-0:2.44.6^really2. 100% | 7.7 MiB/s | 490.4 KiB | 00m00s [200/249] libxcb-devel-0:1.17.0-7.fc44. 100% | 47.8 MiB/s | 1.4 MiB | 00m00s [201/249] less-0:704-4.fc44.x86_64 100% | 3.6 MiB/s | 227.8 KiB | 00m00s [202/249] openssh-clients-0:10.2p1-14.f 100% | 12.1 MiB/s | 779.1 KiB | 00m00s [203/249] openssh-0:10.2p1-14.fc44.x86_ 100% | 5.6 MiB/s | 356.3 KiB | 00m00s [204/249] perl-lib-0:0.65-525.fc44.x86_ 100% | 229.6 KiB/s | 14.2 KiB | 00m00s [205/249] glycin-libs-0:2.1.5-1.fc44.x8 100% | 23.8 MiB/s | 1.5 MiB | 00m00s 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00m00s [219/249] llvm-libs-0:22.1.8-4.fc44.x86 100% | 35.0 MiB/s | 34.1 MiB | 00m01s [220/249] bubblewrap-0:0.12.0-1.fc44.x8 100% | 1.0 MiB/s | 66.9 KiB | 00m00s [221/249] libheif-0:1.23.5-3.fc44.x86_6 100% | 13.3 MiB/s | 855.1 KiB | 00m00s [222/249] libopenjph-0:0.25.3-3.fc44.x8 100% | 5.9 MiB/s | 161.9 KiB | 00m00s [223/249] noopenh264-0:2.6.0-4.fc44.x86 100% | 815.2 KiB/s | 22.0 KiB | 00m00s [224/249] openjpeg-0:2.5.4-3.fc44.x86_6 100% | 7.4 MiB/s | 198.1 KiB | 00m00s [225/249] rav1e-libs-0:0.8.1-3.fc44.x86 100% | 35.6 MiB/s | 1.1 MiB | 00m00s [226/249] svt-av1-libs-0:3.1.2-2.fc44.x 100% | 61.4 MiB/s | 2.0 MiB | 00m00s [227/249] highway-0:1.3.0-2.fc44.x86_64 100% | 24.2 MiB/s | 694.6 KiB | 00m00s [228/249] libjxl-1:0.11.2-1.fc44.x86_64 100% | 18.7 MiB/s | 1.2 MiB | 00m00s [229/249] cairo-gobject-0:1.18.4-6.fc44 100% | 629.8 KiB/s | 17.0 KiB | 00m00s [230/249] librsvg2-0:2.62.3-1.fc44.x86_ 100% | 29.0 MiB/s | 1.9 MiB | 00m00s [231/249] pango-0:1.57.1-1.fc44.x86_64 100% | 13.2 MiB/s | 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| 1.0 MiB/s | 28.6 KiB | 00m00s [245/249] python3-rpm-macros-0:3.14-12. 100% | 459.9 KiB/s | 12.4 KiB | 00m00s [246/249] ninja-build-0:1.13.2-2.fc44.x 100% | 7.4 MiB/s | 203.9 KiB | 00m00s [247/249] python3-packaging-0:25.0-8.fc 100% | 5.8 MiB/s | 161.2 KiB | 00m00s [248/249] annobin-plugin-gcc-0:13.14-1. 100% | 10.4 MiB/s | 684.4 KiB | 00m00s [249/249] annobin-docs-0:13.14-1.fc44.n 100% | 1.4 MiB/s | 86.7 KiB | 00m00s -------------------------------------------------------------------------------- [249/249] Total 100% | 42.8 MiB/s | 256.7 MiB | 00m06s Running transaction [ 1/251] Verify package files 100% | 260.0 B/s | 249.0 B | 00m01s [ 2/251] Prepare transaction 100% | 1.8 KiB/s | 249.0 B | 00m00s [ 3/251] Installing glib2-0:2.88.3-1.f 100% | 273.0 MiB/s | 15.3 MiB | 00m00s [ 4/251] Installing cmake-filesystem-0 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 5/251] Installing expat-0:2.8.3-1.fc 100% | 23.5 MiB/s | 336.4 KiB | 00m00s [ 6/251] Installing libX11-xcb-0:1.8.1 100% | 0.0 B/s | 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Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 setting SOURCE_DATE_EPOCH=1791072000 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-8.fc44.src.rpm RPM build warnings: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 Updating and loading repositories: updates 100% | 71.8 KiB/s | 23.6 KiB | 00m00s fedora 100% | 73.2 KiB/s | 24.1 KiB | 00m00s Copr repository 100% | 95.7 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Nothing to do. Package "libappstream-glib-0.8.4-1.fc44.x86_64" is already installed. Package "desktop-file-utils-0.28-5.fc44.x86_64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "fftw-devel-3.3.10-17.fc44.x86_64" is already installed. Package "gcc-c++-16.2.1-2.fc44.x86_64" is already installed. Package "git-2.55.0-1.fc44.x86_64" is already installed. Package "libpng-devel-2:1.6.58-1.fc44.x86_64" is already installed. Package "libtiff-devel-4.7.2-1.fc44.x86_64" is already installed. Package "mesa-libGL-devel-26.2.3-1.fc44.x86_64" is already installed. Package "mesa-libGLU-devel-9.0.3-8.fc44.x86_64" is already installed. Package "python3-3.14.7-1.fc44.x86_64" is already installed. Package "python3-devel-3.14.7-1.fc44.x86_64" is already installed. Package "qt5-qtbase-devel-5.15.18-2.fc44.x86_64" is already installed. Package "qt5-qtsvg-devel-5.15.18-2.fc44.x86_64" is already installed. Package "zlib-ng-compat-devel-2.3.3-3.fc44.x86_64" is already installed. Finish: build setup for mrtrix3-3.0.8-8.fc44.src.rpm Start: rpmbuild mrtrix3-3.0.8-8.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 setting SOURCE_DATE_EPOCH=1791072000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.WZM6xL Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.sB0Sot + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar xf /builddir/build/SOURCES/eigen-3.4.0.tar.gz + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.cfDW3N + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + unset ARCH + export NUMBER_OF_PROCESSORS=1 + NUMBER_OF_PROCESSORS=1 + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + export 'EIGEN_CFLAGS=-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + EIGEN_CFLAGS='-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + ./configure MRtrix build type requested: release version Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: Header: 1.6.58; library: 1.6.58 Checking for FFTW library: fftw-3.3.10-sse2-avx-avx2-avx2_128 Checking for Qt moc: /usr/bin/moc-qt5 (version 5.15.18) Checking for Qt qmake: /usr/bin/qmake-qt5 (version 5.15.18) Checking for Qt rcc: /usr/bin/rcc-qt5 (version 5.15.18) Checking for Qt: 5.15.18 writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/548) [CC] tmp/cmd/warpinvert.o ( 2/548) [CC] tmp/src/exec_version.o ( 3/548) [CC] tmp/core/file/mmap.o ( 4/548) [CC] tmp/core/file/ofstream.o ( 5/548) [CC] tmp/core/file/dicom/image.o ( 6/548) [CC] tmp/core/math/zstatistic.o ( 7/548) [CC] tmp/core/axes.o ( 8/548) [CC] tmp/core/thread.o ( 9/548) [CC] tmp/core/file/dicom/series.o ( 10/548) [CC] tmp/core/file/dicom/study.o ( 11/548) [CC] tmp/core/formats/png.o ( 12/548) [CC] tmp/core/app.o ( 13/548) [CC] tmp/core/file/tiff.o ( 14/548) [CC] tmp/core/version.o ( 15/548) [CC] tmp/core/metadata/slice_encoding.o ( 16/548) [CC] tmp/core/file/name_parser.o ( 17/548) [CC] tmp/core/stats.o ( 18/548) [CC] tmp/core/formats/nifti2.o ( 19/548) [CC] tmp/core/formats/list.o ( 20/548) [CC] tmp/core/filter/connected_components.o ( 21/548) [CC] tmp/core/file/config.o ( 22/548) [CC] tmp/core/file/dicom/dict.o ( 23/548) [CC] tmp/core/image_io/scratch.o ( 24/548) [CC] tmp/core/formats/mrtrix_sparse_legacy.o ( 25/548) [CC] tmp/core/image_io/variable_scaling.o ( 26/548) [CC] tmp/core/formats/ram.o ( 27/548) [CC] tmp/core/image_io/null.o ( 28/548) [CC] tmp/core/image_io/default.o ( 29/548) [CC] tmp/core/formats/dicom.o ( 30/548) [CC] tmp/core/file/nifti_utils.o ( 31/548) [CC] tmp/core/math/SH.o ( 32/548) [CC] tmp/core/image_io/tiff.o ( 33/548) [CC] tmp/core/file/mgh.o ( 34/548) [CC] tmp/core/file/dicom/tree.o ( 35/548) [CC] tmp/core/misc/bitset.o ( 36/548) [CC] tmp/core/math/stats/glm.o ( 37/548) [CC] tmp/core/math/average_space.o ( 38/548) [CC] tmp/core/mrtrix.o ( 39/548) [CC] tmp/core/dwi/gradient.o ( 40/548) [CC] tmp/core/math/stats/import.o ( 41/548) [CC] tmp/core/formats/mgh.o ( 42/548) [CC] tmp/core/file/png.o ( 43/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 44/548) [CC] tmp/core/image_io/pipe.o ( 45/548) [CC] tmp/core/math/stats/fwe.o ( 46/548) [CC] tmp/core/algo/histogram.o ( 47/548) [CC] tmp/core/image_io/mosaic.o ( 48/548) [CC] tmp/core/formats/xds.o ( 49/548) [CC] tmp/core/formats/mrtrix_utils.o ( 50/548) [CC] tmp/core/image_io/fetch_store.o ( 51/548) [CC] tmp/core/signal_handler.o ( 52/548) [CC] tmp/core/formats/mgz.o ( 53/548) [CC] tmp/core/dwi/shells.o ( 54/548) [CC] tmp/core/math/bessel.o ( 55/548) [CC] tmp/core/math/betainc.o ( 56/548) [CC] tmp/core/image_io/base.o ( 57/548) [CC] tmp/core/image_io/gz.o ( 58/548) [CC] tmp/core/formats/mri.o ( 59/548) [CC] tmp/core/file/dicom/quick_scan.o ( 60/548) [CC] tmp/core/file/key_value.o ( 61/548) [CC] tmp/core/math/erfinv.o ( 62/548) [CC] tmp/core/progressbar.o ( 63/548) [CC] tmp/core/formats/pipe.o ( 64/548) [CC] tmp/core/exception.o ( 65/548) [CC] tmp/core/image_io/sparse.o ( 66/548) [CC] tmp/core/formats/nifti1_gz.o ( 67/548) [CC] tmp/core/formats/mrtrix_gz.o ( 68/548) [CC] tmp/core/formats/nifti1.o ( 69/548) [CC] tmp/core/image_io/ram.o ( 70/548) [CC] tmp/core/formats/nifti2_gz.o ( 71/548) [CC] tmp/core/formats/tiff.o ( 72/548) [CC] tmp/core/formats/mrtrix.o ( 73/548) [CC] tmp/core/file/dicom/element.o ( 74/548) [CC] tmp/core/image_io/png.o ( 75/548) [CC] tmp/core/metadata/bids.o ( 76/548) [CC] tmp/core/formats/par.o ( 77/548) [CC] tmp/core/file/dicom/patient.o ( 78/548) [CC] tmp/core/adapter/reslice.o ( 79/548) [CC] tmp/core/file/dicom/select_cmdline.o ( 80/548) [CC] tmp/core/math/stats/shuffle.o ( 81/548) [CC] tmp/core/metadata/phase_encoding.o ( 82/548) [CC] tmp/core/header.o ( 83/548) [CC] tmp/core/datatype.o ( 84/548) [CC] tmp/core/file/dicom/mapper.o ( 85/548) [CC] tmp/core/stride.o ( 86/548) [LD] lib/libmrtrix.so ( 87/548) [LB] bin/warpinvert ( 88/548) [CC] tmp/cmd/warpinit.o ( 89/548) [LB] bin/warpinit ( 90/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ ( 91/548) [LB] bin/warpcorrect ( 92/548) [CC] tmp/cmd/warpconvert.o ( 93/548) [LB] bin/warpconvert ( 94/548) [CC] tmp/cmd/warp2metric.o ( 95/548) [LB] bin/warp2metric ( 96/548) [CC] tmp/src/connectome/lut.o ( 97/548) [CC] tmp/cmd/voxel2mesh.o ( 98/548) [CC] tmp/src/surface/polygon.o ( 99/548) [CC] tmp/src/surface/mesh.o (100/548) [CC] tmp/src/surface/freesurfer.o (101/548) [CC] tmp/src/surface/scalar.o (102/548) [CC] tmp/src/connectome/connectome.o (103/548) [LB] bin/voxel2mesh (104/548) [CC] tmp/cmd/voxel2fixel.o (105/548) [LB] bin/voxel2fixel (106/548) [CC] tmp/src/stats/permtest.o (107/548) [CC] tmp/cmd/vectorstats.o (108/548) [LB] bin/vectorstats (109/548) [CC] tmp/src/dwi/tractography/rng.o (110/548) [CC] tmp/src/dwi/tractography/seeding/list.o (111/548) [CC] tmp/src/dwi/tractography/roi.o (112/548) [CC] tmp/src/dwi/tractography/file_base.o (113/548) [CC] tmp/src/dwi/tractography/properties.o (114/548) [CC] tmp/cmd/tsfvalidate.o (115/548) [LB] bin/tsfvalidate (116/548) [CC] tmp/cmd/tsfthreshold.o (117/548) [LB] bin/tsfthreshold (118/548) [CC] tmp/cmd/tsfsmooth.o (119/548) [LB] bin/tsfsmooth (120/548) [CC] tmp/cmd/tsfmult.o (121/548) [LB] bin/tsfmult (122/548) [CC] tmp/cmd/tsfinfo.o (123/548) [LB] bin/tsfinfo (124/548) [CC] tmp/cmd/tsfdivide.o (125/548) [LB] bin/tsfdivide (126/548) [CC] tmp/cmd/transformconvert.o (127/548) [LB] bin/transformconvert (128/548) [CC] tmp/cmd/transformcompose.o (129/548) [LB] bin/transformcompose (130/548) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (131/548) [LB] bin/transformcalc (132/548) [CC] tmp/cmd/tensor2metric.o (133/548) [LB] bin/tensor2metric (134/548) [CC] tmp/cmd/tcktransform.o (135/548) [LB] bin/tcktransform (136/548) [CC] tmp/src/dwi/tractography/weights.o (137/548) [CC] tmp/cmd/tckstats.o (138/548) [LB] bin/tckstats (139/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (140/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (141/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o (142/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o (143/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o (144/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o (145/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (146/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (147/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (148/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (149/548) [CC] tmp/src/dwi/fmls.o (150/548) [CC] tmp/src/dwi/tractography/ACT/act.o (151/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (152/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (153/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (154/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o (155/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (156/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (157/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (158/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (159/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (160/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (161/548) [CC] tmp/src/dwi/directions/mask.o (162/548) [CC] tmp/src/dwi/directions/set.o (163/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (164/548) [CC] tmp/src/dwi/directions/predefined.o (165/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (166/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (167/548) [CC] tmp/src/dwi/tractography/resampling/arc.o (168/548) [LB] bin/tcksift2 (169/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (170/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (171/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (172/548) [LB] bin/tcksift (173/548) [CC] tmp/cmd/tcksample.o (174/548) [LB] bin/tcksample (175/548) [CC] tmp/cmd/tckresample.o (176/548) [LB] bin/tckresample (177/548) [CC] tmp/src/dwi/tractography/mapping/writer.o (178/548) [CC] tmp/cmd/tckmap.o (179/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (180/548) [LB] bin/tckmap (181/548) [CC] tmp/cmd/tckinfo.o (182/548) [LB] bin/tckinfo (183/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (184/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (185/548) [CC] tmp/cmd/tckglobal.o (186/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (187/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (188/548) [CC] tmp/src/dwi/tractography/GT/particle.o (189/548) [CC] tmp/src/dwi/tractography/GT/gt.o (190/548) [LB] bin/tckglobal (191/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (192/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (193/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (194/548) [CC] tmp/src/dwi/tractography/seeding/basic.o (195/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (196/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o (197/548) [CC] tmp/src/dwi/tractography/tracking/method.o (198/548) [CC] tmp/src/dwi/tractography/tracking/shared.o (199/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o (200/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (201/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2213[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (202/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (203/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (204/548) [LB] bin/tckgen (205/548) [CC] tmp/src/dwi/tractography/editing/editing.o (206/548) [CC] tmp/src/dwi/tractography/editing/worker.o (207/548) [CC] tmp/src/dwi/tractography/editing/receiver.o (208/548) [CC] tmp/cmd/tckedit.o (209/548) [LB] bin/tckedit (210/548) [CC] tmp/cmd/tckdfc.o (211/548) [LB] bin/tckdfc (212/548) [CC] tmp/cmd/tckconvert.o (213/548) [LB] bin/tckconvert (214/548) [CC] tmp/cmd/tck2fixel.o (215/548) [LB] bin/tck2fixel (216/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (217/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o (218/548) [CC] tmp/cmd/tck2connectome.o (219/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o (220/548) [LB] bin/tck2connectome (221/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (222/548) [CC] tmp/src/gui/dwi/render_frame_moc.o (223/548) [CC] tmp/src/gui/opengl/shader.o (224/548) [CC] tmp/src/gui/shview/render_window.o (225/548) [CC] tmp/src/gui/dwi/renderer.o (226/548) [CC] tmp/src/gui/dialog/file.o (227/548) [CC] tmp/src/gui/lighting_dock.o (228/548) [CC] tmp/src/gui/dialog/dialog.o (229/548) [CC] tmp/cmd/shview.o (230/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (231/548) [CC] tmp/src/gui/opengl/lighting_moc.o (232/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp (233/548) [CC] tmp/src/gui/shview/render_window_moc.o (234/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o (235/548) [CC] tmp/src/gui/dialog/report_exception.o (236/548) [CC] tmp/src/gui/opengl/gl.o (237/548) [MOC] tmp/src/gui/color_button_moc.cpp (238/548) [CC] tmp/src/gui/color_button_moc.o (239/548) [CC] tmp/src/gui/crosshair.o (240/548) [CC] tmp/src/gui/opengl/font.o (241/548) [CC] tmp/src/gui/shview/file_open.o (242/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp (243/548) [CC] tmp/src/gui/lighting_dock_moc.o (244/548) [CC] tmp/src/gui/shapes/halfsphere.o (245/548) [CC] tmp/src/gui/dialog/list.o (246/548) [CC] tmp/src/gui/color_button.o (247/548) [CC] tmp/src/gui/projection.o (248/548) [CC] tmp/src/gui/opengl/lighting.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (249/548) [RCC] tmp/src/gui/shview/icons.cpp (250/548) [CC] tmp/src/gui/shview/icons.o (251/548) [CC] tmp/src/gui/dialog/dicom.o (252/548) [CC] tmp/src/gui/dialog/progress.o (253/548) [CC] tmp/src/gui/dwi/render_frame.o (254/548) [CC] tmp/src/gui/gui.o (255/548) [LB] bin/shview (256/548) [CC] tmp/cmd/shconv.o (257/548) [LB] bin/shconv (258/548) [CC] tmp/cmd/shbasis.o (259/548) [LB] bin/shbasis (260/548) [CC] tmp/cmd/sh2response.o (261/548) [LB] bin/sh2response (262/548) [CC] tmp/cmd/sh2power.o (263/548) [LB] bin/sh2power (264/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.714[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (265/548) [LB] bin/sh2peaks (266/548) [CC] tmp/src/dwi/directions/file.o (267/548) [CC] tmp/cmd/sh2amp.o (268/548) [LB] bin/sh2amp (269/548) [CC] tmp/cmd/peaks2fixel.o (270/548) [LB] bin/peaks2fixel (271/548) [CC] tmp/cmd/peaks2amp.o (272/548) [LB] bin/peaks2amp (273/548) [CC] tmp/cmd/mtnormalise.o (274/548) [LB] bin/mtnormalise (275/548) [CC] tmp/src/gui/mrview/mode/lightbox.o (276/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (277/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (278/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (279/548) [CC] tmp/src/gui/mrview/tool/view.o (280/548) [CC] tmp/src/gui/mrview/mode/volume.o (281/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (282/548) [CC] tmp/src/gui/mrview/tool/view_moc.o (283/548) [CC] tmp/src/gui/mrview/volume.o (284/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (285/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (286/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o (287/548) [CC] tmp/src/gui/mrview/combo_box_error.o (288/548) [CC] tmp/src/gui/mrview/displayable.o (289/548) [CC] tmp/src/gui/mrview/adjust_button.o (290/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (291/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (292/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (293/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (294/548) [CC] tmp/src/gui/mrview/tool/base.o (295/548) [CC] tmp/src/gui/mrview/colourmap_button.o (296/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (297/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (298/548) [CC] tmp/src/gui/mrview/colourbars.o (299/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (300/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (301/548) [CC] tmp/src/gui/mrview/gui_image.o (302/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (303/548) [CC] tmp/src/gui/mrview/spin_box_moc.o (304/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (305/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (306/548) [CC] tmp/src/gui/mrview/file_open.o (307/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp (308/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o (309/548) [CC] tmp/src/gui/mrview/window.o (310/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (311/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (312/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (313/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (314/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (315/548) [CC] tmp/src/gui/cursor.o (316/548) [CC] tmp/src/gui/dialog/image_properties.o (317/548) [CC] tmp/src/gui/mrview/mode/slice.o (318/548) [CC] tmp/src/gui/mrview/tool/odf/model.o (319/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o (320/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (321/548) [CC] tmp/src/gui/dialog/image_properties_moc.o (322/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (323/548) [CC] tmp/src/gui/mrview/sync/processlock.o (324/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o (325/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (326/548) [MOC] tmp/src/gui/mrview/window_moc.cpp (327/548) [CC] tmp/src/gui/mrview/window_moc.o (328/548) [CC] tmp/src/gui/mrview/mode/ortho.o (329/548) [CC] tmp/src/colourmap.o (330/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (331/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o (332/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (333/548) [CC] tmp/src/gui/mrview/displayable_moc.o (334/548) [CC] tmp/src/surface/mesh_multi.o (335/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (336/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (337/548) [CC] tmp/src/gui/shapes/cube.o (338/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o (339/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp (340/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o (341/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (342/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (343/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (344/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o (345/548) [CC] tmp/cmd/mrview.o (346/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (347/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (348/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (349/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (350/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (351/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (352/548) [CC] tmp/src/gui/dialog/opengl.o (353/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (354/548) [CC] tmp/src/gui/mrview/tool/transform.o (355/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (356/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o (357/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (358/548) [CC] tmp/src/gui/mrview/sync/client.o (359/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (360/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (361/548) [CC] tmp/src/gui/shapes/cylinder.o (362/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (363/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (364/548) [CC] tmp/src/gui/shapes/sphere.o (365/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (366/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o (367/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o (368/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (369/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (370/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (371/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (372/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (373/548) [CC] tmp/src/gui/mrview/mode/base.o (374/548) [CC] tmp/src/gui/mrview/tool/overlay.o (375/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (376/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (377/548) [RCC] tmp/src/gui/mrview/icons.cpp (378/548) [CC] tmp/src/gui/mrview/icons.o (379/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o (380/548) [CC] tmp/src/gui/mrview/tool/odf/item.o (381/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (382/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o (383/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (384/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (385/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (386/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (387/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (388/548) [LB] bin/mrview (389/548) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (390/548) [CC] tmp/src/registration/multi_contrast.o (391/548) [LB] bin/mrtransform (392/548) [CC] tmp/cmd/mrthreshold.o (393/548) [LB] bin/mrthreshold (394/548) [CC] tmp/cmd/mrstats.o (395/548) [LB] bin/mrstats (396/548) [CC] tmp/src/registration/linear.o (397/548) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (398/548) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (399/548) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (400/548) [CC] tmp/src/registration/transform/convergence_check.o (401/548) [CC] tmp/src/registration/nonlinear.o (402/548) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrregister.cpp -o tmp/cmd/mrregister.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (403/548) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (404/548) [LB] bin/mrregister (405/548) [CC] tmp/cmd/mrmetric.o (406/548) [LB] bin/mrmetric (407/548) [CC] tmp/cmd/mrmath.o (408/548) [LB] bin/mrmath (409/548) [CC] tmp/cmd/mrinfo.o (410/548) [LB] bin/mrinfo (411/548) [CC] tmp/cmd/mrhistogram.o (412/548) [LB] bin/mrhistogram (413/548) [CC] tmp/cmd/mrhistmatch.o (414/548) [LB] bin/mrhistmatch (415/548) [CC] tmp/cmd/mrgrid.o (416/548) [LB] bin/mrgrid (417/548) [CC] tmp/cmd/mrfilter.o (418/548) [LB] bin/mrfilter (419/548) [CC] tmp/cmd/mredit.o (420/548) [LB] bin/mredit (421/548) [CC] tmp/cmd/mrdump.o (422/548) [LB] bin/mrdump (423/548) [CC] tmp/cmd/mrdegibbs.o (424/548) [LB] bin/mrdegibbs (425/548) [CC] tmp/cmd/mrconvert.o (426/548) [LB] bin/mrconvert (427/548) [CC] tmp/cmd/mrcolour.o (428/548) [LB] bin/mrcolour (429/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (430/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (431/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (432/548) [LB] bin/mrclusterstats (433/548) [CC] tmp/cmd/mrcheckerboardmask.o (434/548) [LB] bin/mrcheckerboardmask (435/548) [CC] tmp/cmd/mrcentroid.o (436/548) [LB] bin/mrcentroid (437/548) [CC] tmp/cmd/mrcat.o (438/548) [LB] bin/mrcat (439/548) [CC] tmp/cmd/mrcalc.o (440/548) [LB] bin/mrcalc (441/548) [CC] tmp/cmd/mraverageheader.o (442/548) [LB] bin/mraverageheader (443/548) [CC] tmp/src/surface/filter/smooth.o (444/548) [CC] tmp/src/surface/filter/base.o (445/548) [CC] tmp/cmd/meshfilter.o (446/548) [LB] bin/meshfilter (447/548) [CC] tmp/src/surface/filter/vertex_transform.o (448/548) [CC] tmp/cmd/meshconvert.o (449/548) [LB] bin/meshconvert (450/548) [CC] tmp/cmd/mesh2voxel.o (451/548) [CC] tmp/src/surface/algo/mesh2image.o (452/548) [LB] bin/mesh2voxel (453/548) [CC] tmp/cmd/maskfilter.o (454/548) [LB] bin/maskfilter (455/548) [CC] tmp/cmd/maskdump.o (456/548) [LB] bin/maskdump (457/548) [CC] tmp/cmd/labelstats.o (458/548) [LB] bin/labelstats (459/548) [CC] tmp/cmd/labelconvert.o (460/548) [LB] bin/labelconvert (461/548) [CC] tmp/cmd/label2mesh.o (462/548) [LB] bin/label2mesh (463/548) [CC] tmp/cmd/label2colour.o (464/548) [LB] bin/label2colour (465/548) [CC] tmp/cmd/fod2fixel.o (466/548) [LB] bin/fod2fixel (467/548) [CC] tmp/cmd/fod2dec.o (468/548) [LB] bin/fod2dec (469/548) [CC] tmp/cmd/fixelreorient.o (470/548) [LB] bin/fixelreorient (471/548) [CC] tmp/src/fixel/index_remapper.o (472/548) [CC] tmp/src/stats/cfe.o (473/548) [CC] tmp/src/fixel/matrix.o (474/548) [CC] tmp/src/fixel/filter/connect.o (475/548) [CC] tmp/src/fixel/filter/smooth.o (476/548) [CC] tmp/cmd/fixelfilter.o (477/548) [LB] bin/fixelfilter (478/548) [CC] tmp/cmd/fixelcrop.o (479/548) [LB] bin/fixelcrop (480/548) [CC] tmp/cmd/fixelcorrespondence.o (481/548) [LB] bin/fixelcorrespondence (482/548) [CC] tmp/cmd/fixelconvert.o (483/548) [LB] bin/fixelconvert (484/548) [CC] tmp/cmd/fixelconnectivity.o (485/548) [LB] bin/fixelconnectivity (486/548) [CC] tmp/cmd/fixelcfestats.o (487/548) [LB] bin/fixelcfestats (488/548) [CC] tmp/cmd/fixel2voxel.o (489/548) [LB] bin/fixel2voxel (490/548) [CC] tmp/cmd/fixel2tsf.o (491/548) [LB] bin/fixel2tsf (492/548) [CC] tmp/cmd/fixel2sh.o (493/548) [LB] bin/fixel2sh (494/548) [CC] tmp/cmd/fixel2peaks.o (495/548) [LB] bin/fixel2peaks (496/548) [CC] tmp/cmd/dwiextract.o (497/548) [LB] bin/dwiextract (498/548) [CC] tmp/cmd/dwidenoise.o (499/548) [LB] bin/dwidenoise (500/548) [CC] tmp/cmd/dwi2tensor.o (501/548) [LB] bin/dwi2tensor (502/548) [CC] tmp/cmd/dwi2mask.o (503/548) [LB] bin/dwi2mask (504/548) [CC] tmp/cmd/dwi2fod.o (505/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o (506/548) [CC] tmp/src/dwi/sdeconv/csd.o (507/548) [LB] bin/dwi2fod (508/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:580, from /usr/include/c++/16/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (509/548) [LB] bin/dwi2adc (510/548) [CC] tmp/cmd/dirstat.o (511/548) [LB] bin/dirstat (512/548) [CC] tmp/cmd/dirsplit.o (513/548) [LB] bin/dirsplit (514/548) [CC] tmp/cmd/dirorder.o (515/548) [LB] bin/dirorder (516/548) [CC] tmp/cmd/dirmerge.o (517/548) [LB] bin/dirmerge (518/548) [CC] tmp/cmd/dirgen.o (519/548) [LB] bin/dirgen (520/548) [CC] tmp/cmd/dirflip.o (521/548) [LB] bin/dirflip (522/548) [CC] tmp/cmd/dcminfo.o (523/548) [LB] bin/dcminfo (524/548) [CC] tmp/cmd/dcmedit.o (525/548) [LB] bin/dcmedit (526/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (527/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/548) [LB] bin/connectomestats (529/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (530/548) [LB] bin/connectomeedit (531/548) [CC] tmp/src/dwi/tractography/connectome/extract.o (532/548) [CC] tmp/cmd/connectome2tck.o (533/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (534/548) [LB] bin/connectome2tck (535/548) [CC] tmp/cmd/amp2sh.o (536/548) [LB] bin/amp2sh (537/548) [CC] tmp/cmd/amp2response.o (538/548) [LB] bin/amp2response (539/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (540/548) [LB] bin/afdconnectivity (541/548) [CC] tmp/cmd/5ttedit.o (542/548) [LB] bin/5ttedit (543/548) [CC] tmp/cmd/5ttcheck.o (544/548) [LB] bin/5ttcheck (545/548) [CC] tmp/cmd/5tt2vis.o (546/548) [LB] bin/5tt2vis (547/548) [CC] tmp/cmd/5tt2gmwmi.o (548/548) [LB] bin/5tt2gmwmi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.hfArAt + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + binary_name=mrview + '[' mrview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + binary_name=shview + '[' shview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + grep -q python + desktop-file-install --dir=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications --set-key=Version --set-value=1.0 --remove-key=Value --set-key=Keywords '--set-value=MRI;diffusion;tractography;DWI;neuroimaging;' --set-key=Categories '--set-value=Science;MedicalSoftware;' --set-key=MimeType '--set-value=application/x-mrtrix;application/x-mrtrix-gz;application/x-mrtrix-tracks;application/x-nifti;application/x-mgh;' mrview.desktop + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/16x16/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/32x32/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/48x48/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/64x64/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/128x128/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/application-x-mrtrix.png + cat + install -Dpm0644 mrtrix3-mime.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/mime/packages/mrtrix3.xml + install -Dpm 0644 /builddir/build/SOURCES/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + appstream-util validate-relax --nonet /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml: OK + /usr/bin/find-debuginfo -j1 --strict-build-id -m -i --build-id-seed 3.0.8-8.fc44 --unique-debug-suffix -3.0.8-8.fc44.x86_64 --unique-debug-src-base mrtrix3-3.0.8-8.fc44.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 113 files DWARF-compressing 113 files sepdebugcrcfix: Updated 113 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-8.fc44.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-8.fc44.x86_64/eigen-3.4.0/Eigen/src/Core/util/Meta.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-8.fc44.x86_64/eigen-3.4.0/Eigen/src/Core/util/BlasUtil.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-8.fc44.x86_64/eigen-3.4.0/Eigen/src/Core/arch/SSE/PacketMath.h is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 153 directories and 1395 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr Scanned 152 directories and 1395 files, considered 1265 files, read 73 files, linked 3 files, 0 errors sum of sizes of linked files: 0 bytes Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.l9jGaH + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + desktop-file-validate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications/mrview.desktop + test -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-8.fc44.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4WXosn + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.L4AQ7s + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: application() application(mrview.desktop) bundled(eigen3) = 3.4.0 libmrtrix.so()(64bit) metainfo() metainfo(mrview.metainfo.xml) mimehandler(application/x-mgh) mimehandler(application/x-mrtrix) mimehandler(application/x-mrtrix-gz) mimehandler(application/x-mrtrix-tracks) mimehandler(application/x-nifti) mrtrix3 = 3.0.8-8.fc44 mrtrix3(x86-64) = 3.0.8-8.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 libGL.so.1()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libc.so.6(GLIBC_ABI_GNU2_TLS)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmrtrix.so()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Recommends: neuro-mime-types Processing files: mrtrix3-debugsource-3.0.8-8.fc44.x86_64 Provides: mrtrix3-debugsource = 3.0.8-8.fc44 mrtrix3-debugsource(x86-64) = 3.0.8-8.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-8.fc44.x86_64 Provides: debuginfo(build-id) = 0159147875ad71e14a8a6204ab9ced19cf279d60 debuginfo(build-id) = 0ab1e32a3e994c42f28cc967da4f708c9e773b9f debuginfo(build-id) = 0b668ea0fc952ced2c0a4d443c225931c3dd1aea debuginfo(build-id) = 0ddc5eb1785bb19475e9e288928a69cc43734062 debuginfo(build-id) = 0f4c5f58f6a322751ec03791329d6c7e4715d045 debuginfo(build-id) = 13640b687e2804cb41cd9130faaeae145ff3711b debuginfo(build-id) = 141b5cde5b85db47ff12b7707ccaeb7441f1a395 debuginfo(build-id) = 1b2b0ddb6ce4e9d4e04d4ee637a0395ea927e880 debuginfo(build-id) = 1cb08fd6df99a339c266083baa26739aa0f7e9eb debuginfo(build-id) = 20b9b2bd94286a96ab0fd31ae2186a5dd927a266 debuginfo(build-id) = 21ace7170d00faffe671a65b9bcbf3fd1f428c5d debuginfo(build-id) = 21d81ada65a9a03a087b2cf4ffc247f383723794 debuginfo(build-id) = 22327690f51034f30baa8e6023886a8613ef7cf1 debuginfo(build-id) = 24cad8abdc306488654aecca62c28707f1fd3eb1 debuginfo(build-id) = 255e5a82617e3d5fcd83980dc03c05b290e05b58 debuginfo(build-id) = 26ab2dbd7450efd0a30aff5f30a87db39e1e1b9f debuginfo(build-id) = 26e86db1c3cbaa747d94c90e188b9f665b22a380 debuginfo(build-id) = 27fcd6f9c9fd59c5fb0ec4c55bb8af91cb0f7796 debuginfo(build-id) = 294b54d04d787f865934d0be887ec335e9cc6464 debuginfo(build-id) = 2ada7b0a7a42269a0336a135e3a3d2a97a9ac16e debuginfo(build-id) = 2c2b19501ee59ff844dc63bf6fd04a1837caeb30 debuginfo(build-id) = 2c804beddf1c02b5c240f3b795496a5f5613945d debuginfo(build-id) = 2ef5ad208a8660e9bd415b2146c29915b8c91ad1 debuginfo(build-id) = 3295cce7fe4e0b076ff210972169427c55c9840f debuginfo(build-id) = 32e690901f93929ec44b9de374e6a7316758510c debuginfo(build-id) = 34f43fb471e67e300117da080a105b36d425853d debuginfo(build-id) = 3794deae8ba528135891507a7896461697708470 debuginfo(build-id) = 39eec3f1e1ceee9f2310eb6c1915a0a324c5ab77 debuginfo(build-id) = 3b8478f29f9d33008ae4ea2da316ae5fff8a4f1f debuginfo(build-id) = 3db402c5abd47d5a887bfa47cb6d9298f734a2c1 debuginfo(build-id) = 3efff80622f2ecea76d14757bf16a9a91c755637 debuginfo(build-id) = 405b129d33edbd618805ff1146f498529f15bab9 debuginfo(build-id) = 43a638e7a66309927fca54dba90a8135d2fc3f6f debuginfo(build-id) = 43ee2dda589097cc440e4492b2edb5d72be0910c debuginfo(build-id) = 45fb0b2e488b5e1bd273cc8bbd71b31742d71188 debuginfo(build-id) = 4e81f1a5048c335a62fbd87f1abbeec696808c28 debuginfo(build-id) = 50389f000df6a9a740af68271108f5c703e374c2 debuginfo(build-id) = 5325ed9aec8607f5e044a37a3f3f70ea7f100e8c debuginfo(build-id) = 5362e519561c801bb5bc27f66a91eaf71c7326e7 debuginfo(build-id) = 55739344381da9a2e184e7d0c054ce7b9114fb28 debuginfo(build-id) = 584ff8aaec5920e8751674a3843e9c53ca82d13a debuginfo(build-id) = 5a9591846967b24f8a11dccac6efebea7827d5e4 debuginfo(build-id) = 5ba34262ea9fbdd193aa6452f1c44f72679651be debuginfo(build-id) = 5c6f3ca5ba97b583f791f5a9be1ab4c701061429 debuginfo(build-id) = 5d65ef00567ecc74e370ef5baf6cd468682aa8fb debuginfo(build-id) = 5fd64aa75f4a4469c022f769e674aab618b2ac8b debuginfo(build-id) = 654dbd27e4477cef80a91e01c86d4ee1a42c1ffc debuginfo(build-id) = 66898f56b42c0a768e205e5d42858e5f15046d03 debuginfo(build-id) = 6689e95d829089dac4f78788cb5ee721c399ddfd debuginfo(build-id) = 66befbe61694b33d793eb122d2f1c25a8304705a debuginfo(build-id) = 6ca6bcce53e5c6736e33685afab72cd31a864077 debuginfo(build-id) = 6f0717bb7d65c7adfbda625ed3d03b662551c003 debuginfo(build-id) = 726a66df43cde4cb42bdbdc7c4bc414af68ed6eb debuginfo(build-id) = 73360eba3077933c40a301bf636478b54e076666 debuginfo(build-id) = 7543442d11257d16086a2e5506b050eb488246ae debuginfo(build-id) = 7c04990e3140dfb33d458e1bd172df93c3f1d804 debuginfo(build-id) = 7d3402d2b311ffc93290336786f1e42ce1243671 debuginfo(build-id) = 7ec50c186465d34e1b998f0713a0e75282c208e1 debuginfo(build-id) = 8360b77ab09bdc719aa267ee8e16e62a42c5d8be debuginfo(build-id) = 8375b446972f51d8cf1d93f1260c34b9e86617d3 debuginfo(build-id) = 844dd1e19d1278877b96b25100830d9aa3a5e050 debuginfo(build-id) = 87d22f98ac7686ce2beeec3b553a0d2af9507c96 debuginfo(build-id) = 88da28fb30a4d4625436aeca3e17b16197af3293 debuginfo(build-id) = 8a2696247a536bf989cb64c46586fd30fef66535 debuginfo(build-id) = 8ab66a3ecaef0875529ff7a83f523b3e74f52462 debuginfo(build-id) = 8c53f9918fe240c1b2cdfcefb19c4b1ac0578ee6 debuginfo(build-id) = 8efc0d3a0ab478855e528f122021f87dee943630 debuginfo(build-id) = 93e958b50a1db0daa8b259ad1027591281edb514 debuginfo(build-id) = 94c4cee10425f5e47c4b1f4694d6125fbe1ffe3c debuginfo(build-id) = 97ec7aee43ed15b1117916f2c1ffa5dd7f678562 debuginfo(build-id) = 9a7562382027b30499c062d4a28de7bb0f6788ca debuginfo(build-id) = 9c0fdb295ef7417278375be33d755f8d607846e5 debuginfo(build-id) = 9e89f8974b9d90f15a003db9605433e0945ac9a9 debuginfo(build-id) = 9f483eb2d5e17bd493b07381272e03a79afa8662 debuginfo(build-id) = a071e560e235c1d7e0e5698fe02c12e4a8f4b038 debuginfo(build-id) = a1f3ce669e23a6838734f500dcf81a93ce5636db debuginfo(build-id) = a3f070e3aeb595be761972c46b3705b4ba39ce2c debuginfo(build-id) = a419162f47d843e6461889529f8a9dc709b3a056 debuginfo(build-id) = a5f743ee81fca56d027f6d790c5b0f5da34d49b9 debuginfo(build-id) = a71d701401019a6d1411dd88b37fb3b6683bba6e debuginfo(build-id) = aa03ccb2569768466a6a1b698b00fb492a50c373 debuginfo(build-id) = abead8d05ac5e7d670418064f689615874fb1fec debuginfo(build-id) = ad16ef2584e648fe1944608d5e29ff9ff944e2f8 debuginfo(build-id) = aeb25dadd94ba9cefa63b77f03b14faac7b19523 debuginfo(build-id) = b0bea2123d10bc75cffd22879b0e504d593b0310 debuginfo(build-id) = b29000a2086d8e65bb6b18ecc7292ad58aab98ba debuginfo(build-id) = b5857f8d59c4fe1ff08bbf46908910a594ea514c debuginfo(build-id) = b9f8edf9b1285afb55cac0637e69b0d7dc78fb2d debuginfo(build-id) = bb2a0c4b3849a13d6d09ec1b41b3646cb0920e58 debuginfo(build-id) = c0227278fbb577691a8ebc556afdb96fa3350a2e debuginfo(build-id) = c5065b0e0bc5fecffd6835fcc9ed5628797ca9d1 debuginfo(build-id) = c584a431c3219c05d66674beb1968e7b64eb44d3 debuginfo(build-id) = c6b9d5df2b220846ff3109d900388b0bceadf684 debuginfo(build-id) = caa210a6c69b366b892713691c108f4b75d0bba8 debuginfo(build-id) = ccb1d8bba1d4e020ccdcea8b65fe549fa2ee9da9 debuginfo(build-id) = cf3f536f79ee59c9014b2d5ea18d519c52791462 debuginfo(build-id) = cfcf5c23f824393a1a918a4e1c157e8075b7d2db debuginfo(build-id) = d972dafb1cd7e4e61e70a7b51f080cc19a9ec136 debuginfo(build-id) = da401dcd5a95738dbe335136f621cc53d1e2abf8 debuginfo(build-id) = dd9e9609060ad090cd9b37f3e3131bfff77c7cb6 debuginfo(build-id) = e10c501d78260b2952ca931d85af05de9625e3cd debuginfo(build-id) = e352caf7b750ea915640b360ac72404de295dd6b debuginfo(build-id) = e4d6ee225d142d9f949ba0fc064ad5c4b923d540 debuginfo(build-id) = ea9dc88241efe8994f7608f38504756d058f245d debuginfo(build-id) = eb114d19039cb657210a3f937b8d0f1bab7bcc53 debuginfo(build-id) = ed0dd353c92aa8499840f9a3a7d486700ce75686 debuginfo(build-id) = f0c45d7ac1060305875a4ccdd88053d93c72fdd2 debuginfo(build-id) = f2f96cd73a3e2a58007e25bfe710a59220d6f445 debuginfo(build-id) = f41236b36d6d78de5cf105eee9dbec484b5b1056 debuginfo(build-id) = f79c91c514f39ed7ed146f13abf778289c9d8cda debuginfo(build-id) = f845b2898be2548824fabff2e191e37b078b93c6 debuginfo(build-id) = f91e676952e5afb298eacd1e31dfdb098124889a debuginfo(build-id) = fa3547482767c0501a5db0992f197d08e1781675 libmrtrix.so-3.0.8-8.fc44.x86_64.debug()(64bit) mrtrix3-debuginfo = 3.0.8-8.fc44 mrtrix3-debuginfo(x86-64) = 3.0.8-8.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(x86-64) = 3.0.8-8.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-8.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-8.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-8.fc44.x86_64.rpm RPM build warnings: bogus date in %changelog: Sat Oct 04 2026 Morgan Hough - 3.0.8-8 absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-8.fc44.src.rpm Finish: build phase for mrtrix3-3.0.8-8.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-44-x86_64-1791127685.745074/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-8.fc44.src.rpm) Config(child) 85 minutes 5 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "8.fc44", "arch": "x86_64" }, { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "8.fc44", "arch": "x86_64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "8.fc44", "arch": "src" }, { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "8.fc44", "arch": "x86_64" } ] } RPMResults finished